From 22d156d5cb2c672774ff7dc986569dea0a6e8a49 Mon Sep 17 00:00:00 2001
From: Patrick Breheny <patrick-breheny@uiowa.edu>
Date: Wed, 5 Mar 2025 15:49:54 -0600
Subject: [PATCH] modifying test coverage workflow

---
 .github/workflows/test-coverage.yaml | 17 ++---------------
 1 file changed, 2 insertions(+), 15 deletions(-)

diff --git a/.github/workflows/test-coverage.yaml b/.github/workflows/test-coverage.yaml
index e53fbe4a..8082e48a 100644
--- a/.github/workflows/test-coverage.yaml
+++ b/.github/workflows/test-coverage.yaml
@@ -32,6 +32,7 @@ jobs:
       - name: Test coverage
         run: |
           cov <- covr::package_coverage(
+            type  = 'all',
             quiet = FALSE,
             clean = FALSE,
             install_path = file.path(normalizePath(Sys.getenv("RUNNER_TEMP"), winslash = "/"), "package")
@@ -40,7 +41,7 @@ jobs:
           covr::to_cobertura(cov)
         shell: Rscript {0}
 
-      - uses: codecov/codecov-action@v4
+      - uses: codecov/codecov-action@v5
         with:
           # Fail if error if not on PR, or if on PR and token is given
           fail_ci_if_error: ${{ github.event_name != 'pull_request' || secrets.CODECOV_TOKEN }}
@@ -48,17 +49,3 @@ jobs:
           plugin: noop
           disable_search: true
           token: ${{ secrets.CODECOV_TOKEN }}
-
-      - name: Show testthat output
-        if: always()
-        run: |
-          ## --------------------------------------------------------------------
-          find '${{ runner.temp }}/package' -name 'testthat.Rout*' -exec cat '{}' \; || true
-        shell: bash
-
-      - name: Upload test results
-        if: failure()
-        uses: actions/upload-artifact@v4
-        with:
-          name: coverage-test-failures
-          path: ${{ runner.temp }}/package