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Printing the initial array loaded using cmlreaders throws an error
The following reproducible example:
import cmlreaders as cml exp = 'FR1' ix = cml.CMLReader.get_data_index() exp_ix = ix.query('experiment == @exp') df_sess = exp_ix.iloc[0] buf = 1500 rel_start = -500 rel_stop = 2100 event_type = 'WORD' reader = cml.CMLReader(subject=df_sess['subject'], experiment=df_sess['experiment'], session=df_sess['session'], localization=df_sess['localization'], montage=df_sess['montage']) events = reader.load('task_events') events = events.query('type == @event_type and eegoffset != -1') events = events[events['list'] > 0] if 'stim_params' in events.columns: events.drop(columns='stim_params', inplace=True) if 'distractor' in events.columns: events.drop(columns='distractor', inplace=True) scheme = reader.load("pairs") dat = reader.load_eeg(events=events.iloc[0:12], rel_start=-buf+rel_start, rel_stop=buf+rel_stop, scheme=scheme).to_ptsa()
Returns
TypeError Traceback (most recent call last) File /usr/global/miniconda/py310_23.1.0-1/envs/workshop_311/lib/python3.11/site-packages/IPython/core/formatters.py:344, in BaseFormatter.__call__(self, obj) 342 method = get_real_method(obj, self.print_method) 343 if method is not None: --> 344 return method() 345 return None 346 else: File /usr/global/miniconda/py310_23.1.0-1/envs/workshop_311/lib/python3.11/site-packages/xarray/core/common.py:173, in AbstractArray._repr_html_(self) 171 if OPTIONS["display_style"] == "text": 172 return f"<pre>{escape(repr(self))}</pre>" --> 173 return formatting_html.array_repr(self) File /usr/global/miniconda/py310_23.1.0-1/envs/workshop_311/lib/python3.11/site-packages/xarray/core/formatting_html.py:322, in array_repr(arr) 320 if hasattr(arr, "xindexes"): 321 indexes = _get_indexes_dict(arr.xindexes) --> 322 sections.append(index_section(indexes)) 324 sections.append(attr_section(arr.attrs)) 326 return _obj_repr(arr, header_components, sections) File /usr/global/miniconda/py310_23.1.0-1/envs/workshop_311/lib/python3.11/site-packages/xarray/core/formatting_html.py:199, in _mapping_section(mapping, name, details_func, max_items_collapse, expand_option_name, enabled) 192 expanded = _get_boolean_with_default( 193 expand_option_name, n_items < max_items_collapse 194 ) 195 collapsed = not expanded 197 return collapsible_section( 198 name, --> 199 details=details_func(mapping), 200 n_items=n_items, 201 enabled=enabled, 202 collapsed=collapsed, 203 ) File /usr/global/miniconda/py310_23.1.0-1/envs/workshop_311/lib/python3.11/site-packages/xarray/core/formatting_html.py:159, in summarize_indexes(indexes) 158 def summarize_indexes(indexes): --> 159 indexes_li = "".join( 160 f"<li class='xr-var-item'>{summarize_index(v, i)}</li>" 161 for v, i in indexes.items() 162 ) 163 return f"<ul class='xr-var-list'>{indexes_li}</ul>" File /usr/global/miniconda/py310_23.1.0-1/envs/workshop_311/lib/python3.11/site-packages/xarray/core/formatting_html.py:160, in <genexpr>(.0) 158 def summarize_indexes(indexes): 159 indexes_li = "".join( --> 160 f"<li class='xr-var-item'>{summarize_index(v, i)}</li>" 161 for v, i in indexes.items() 162 ) 163 return f"<ul class='xr-var-list'>{indexes_li}</ul>" File /usr/global/miniconda/py310_23.1.0-1/envs/workshop_311/lib/python3.11/site-packages/xarray/core/formatting_html.py:144, in summarize_index(coord_names, index) 142 index_id = f"index-{uuid.uuid4()}" 143 preview = escape(inline_index_repr(index)) --> 144 details = short_index_repr_html(index) 146 data_icon = _icon("icon-database") 148 return ( 149 f"<div class='xr-index-name'><div>{name}</div></div>" 150 f"<div class='xr-index-preview'>{preview}</div>" (...) 154 f"<div class='xr-index-data'>{details}</div>" 155 ) File /usr/global/miniconda/py310_23.1.0-1/envs/workshop_311/lib/python3.11/site-packages/xarray/core/formatting_html.py:136, in short_index_repr_html(index) 133 if hasattr(index, "_repr_html_"): 134 return index._repr_html_() --> 136 return f"<pre>{escape(repr(index))}</pre>" File /usr/global/miniconda/py310_23.1.0-1/envs/workshop_311/lib/python3.11/site-packages/xarray/core/indexes.py:568, in PandasIndex.__repr__(self) 567 def __repr__(self): --> 568 return f"PandasIndex({repr(self.index)})" File /usr/global/miniconda/py310_23.1.0-1/envs/workshop_311/lib/python3.11/site-packages/pandas/core/indexes/base.py:1233, in Index.__repr__(self) 1229 """ 1230 Return a string representation for this object. 1231 """ 1232 klass_name = type(self).__name__ -> 1233 data = self._format_data() 1234 attrs = self._format_attrs() 1235 space = self._format_space() File /usr/global/miniconda/py310_23.1.0-1/envs/workshop_311/lib/python3.11/site-packages/pandas/core/indexes/base.py:1275, in Index._format_data(self, name) 1272 if is_object_dtype(self.categories): 1273 is_justify = False -> 1275 return format_object_summary( 1276 self, 1277 self._formatter_func, 1278 is_justify=is_justify, 1279 name=name, 1280 line_break_each_value=self._is_multi, 1281 ) File /usr/global/miniconda/py310_23.1.0-1/envs/workshop_311/lib/python3.11/site-packages/pandas/io/formats/printing.py:436, in format_object_summary(obj, formatter, is_justify, name, indent_for_name, line_break_each_value) 433 line = space2 435 for tail_item in tail[:-1]: --> 436 word = tail_item + sep + " " 437 summary, line = _extend_line(summary, line, word, display_width, space2) 439 # last value: no sep added + 1 space of width used for trailing ',' TypeError: can only concatenate tuple (not "str") to tuple
The text was updated successfully, but these errors were encountered:
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Printing the initial array loaded using cmlreaders throws an error
The following reproducible example:
Returns
The text was updated successfully, but these errors were encountered: