References for mock communities

[peterjc]

Some of these may make good worked examples..

Waeyenberge et al. (2019) New Insights Into Nematode DNA-metabarcoding as Revealed by the Characterization of Artificial and Spiked Nematode Communities
https://doi.org/10.3390/d11040052
https://www.ebi.ac.uk/ena/data/view/PRJNA497979

Two markers: V4-V5 region and V6-V8 region from 18S rRNA gene

Marshall and Stepien (2019) Invasion genetics from eDNA and thousands of larvae: A targeted metabarcoding assay that distinguishes species and population variation of zebra and quagga mussels
https://doi.org/10.1002/ece3.4985
https://www.ebi.ac.uk/ena/browser/view/PRJNA513276
https://github.com/ntmarshall406/HTS-Metabarcoding-Primer-Trimming-Scripts

Single marker: COI

Snyder and Stepien (2020) Increasing confidence for discerning species and population compositions from metabarcoding assays of environmental samples: case studies of fishes in the Laurentian Great Lakes and Wabash River
https://doi.org/10.3897/mbmg.4.53455
https://www.ebi.ac.uk/ena/browser/view/PRJNA625378

Four markers: FishCytb, CarpCytb, GobyCytb, MiFish

Batovska et a. (2021) Developing a non-destructive metabarcoding protocol for detection of pest insects in bulk trap catches
https://doi.org/10.1038/s41598-021-85855-6
https://www.ebi.ac.uk/ena/data/view/PRJNA716058
https://zenodo.org/record/3557020
https://github.com/alexpiper/HemipteraMetabarcodingMS

Three markers: 18S, 12S, COI