diff --git a/README.md b/README.md index 81b2706..23ce5c2 100644 --- a/README.md +++ b/README.md @@ -8,7 +8,7 @@ # hAMRonization This repo contains the hAMRonization module and CLI parser tools combine the outputs of -18 (as of 2022-09-25) disparate antimicrobial resistance gene detection tools into a single unified format. +18 disparate antimicrobial resistance gene detection tools into a single unified format. This is an implementation of the [hAMRonization AMR detection specification scheme](docs/hAMRonization_specification_details.csv) which supports gene presence/absence resistance and mutational resistance (if supported by the underlying tool). @@ -193,7 +193,7 @@ If you want to write multiple reports to one file, this `.write` method can acce Currently implemented parsers and the last tool version for which they have been validated: 1. [abricate](hAMRonization/AbricateIO.py): last updated for v1.0.0 -2. [amrfinderplus](hAMRonization/AmrFinderPlusIO.py): last updated for v3.10.40 +2. [amrfinderplus](hAMRonization/AmrFinderPlusIO.py): last updated for v3.12.18 3. [amrplusplus](hAMRonization/AmrPlusPlusIO.py): last updated for c6b097a 4. [ariba](hAMRonization/AribaIO.py): last updated for v2.14.6 5. [csstar](hAMRonization/CSStarIO.py): last updated for v2.1.0