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Update samplesheet paths to mlst.json reports
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kylacochrane committed Jun 14, 2024
1 parent 11167bd commit 327e46b
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Showing 5 changed files with 5 additions and 5 deletions.
2 changes: 1 addition & 1 deletion tests/data/samplesheets/samplesheet-multiple_keys.csv
Original file line number Diff line number Diff line change
Expand Up @@ -2,4 +2,4 @@ sample,mlst_alleles,address
sampleQ,https://raw.githubusercontent.com/phac-nml/gasnomenclature/dev/tests/data/reports/sampleQ.mlst.json,
sample1,https://raw.githubusercontent.com/phac-nml/gasnomenclature/dev/tests/data/reports/sample1.mlst.json,1.1.1
sample2,https://raw.githubusercontent.com/phac-nml/gasnomenclature/dev/tests/data/reports/sample2.mlst.json,1.1.1
sample3,https://raw.githubusercontent.com/phac-nml/gasnomenclature/input_assure/tests/data/reports/sample3_multiplekeys.mlst.json,1.1.2
sample3,https://raw.githubusercontent.com/phac-nml/gasnomenclature/dev/tests/data/reports/sample3_multiplekeys.mlst.json,1.1.2
2 changes: 1 addition & 1 deletion tests/data/samplesheets/samplesheet-multiple_queries.csv
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@@ -1,6 +1,6 @@
sample,mlst_alleles,address
sampleQ,https://raw.githubusercontent.com/phac-nml/gasnomenclature/dev/tests/data/reports/sampleQ.mlst.json,
sampleN,https://raw.githubusercontent.com/phac-nml/gasnomenclature/update-filter_query/tests/data/reports/sampleN.mlst.json,
sampleN,https://raw.githubusercontent.com/phac-nml/gasnomenclature/dev/tests/data/reports/sampleN.mlst.json,
sample1,https://raw.githubusercontent.com/phac-nml/gasnomenclature/dev/tests/data/reports/sample1.mlst.json,1.1.1
sample2,https://raw.githubusercontent.com/phac-nml/gasnomenclature/dev/tests/data/reports/sample2.mlst.json,1.1.1
sample3,https://raw.githubusercontent.com/phac-nml/gasnomenclature/dev/tests/data/reports/sample3.mlst.json,1.1.2
Original file line number Diff line number Diff line change
Expand Up @@ -2,4 +2,4 @@ sample,mlst_alleles,address
sampleQ,https://raw.githubusercontent.com/phac-nml/gasnomenclature/dev/tests/data/reports/sampleQ.mlst.json,
sample1,https://raw.githubusercontent.com/phac-nml/gasnomenclature/dev/tests/data/reports/sample1.mlst.json,1.1.1
sample2,https://raw.githubusercontent.com/phac-nml/gasnomenclature/dev/tests/data/reports/sample2.mlst.json,1.1.1
sample3,https://raw.githubusercontent.com/phac-nml/gasnomenclature/input_assure/tests/data/reports/sample3_multiplekeys_nomatch.mlst.json,1.1.2
sample3,https://raw.githubusercontent.com/phac-nml/gasnomenclature/dev/tests/data/reports/sample3_multiplekeys_nomatch.mlst.json,1.1.2
2 changes: 1 addition & 1 deletion tests/data/samplesheets/samplesheet_emptyJSON.csv
Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
sample,mlst_alleles,address
sampleQ,https://raw.githubusercontent.com/phac-nml/gasnomenclature/dev/tests/data/reports/sampleQ.mlst.json,
sample1,https://raw.githubusercontent.com/phac-nml/gasnomenclature/dev/tests/data/reports/sample1.mlst.json,1.1.1
sample2,https://raw.githubusercontent.com/phac-nml/gasnomenclature/input_assure/tests/data/reports/sample2_empty.mlst.json,1.1.1
sample2,https://raw.githubusercontent.com/phac-nml/gasnomenclature/dev/tests/data/reports/sample2_empty.mlst.json,1.1.1
sample3,https://raw.githubusercontent.com/phac-nml/gasnomenclature/dev/tests/data/reports/sample3.mlst.json,1.1.2

2 changes: 1 addition & 1 deletion tests/data/samplesheets/samplesheet_gzip.csv
Original file line number Diff line number Diff line change
@@ -1,5 +1,5 @@
sample,mlst_alleles,address
sampleQ,https://raw.githubusercontent.com/phac-nml/gasnomenclature/dev/tests/data/reports/sampleQ.mlst.json,
sample1,https://raw.githubusercontent.com/phac-nml/gasnomenclature/input_assure/tests/data/reports/sample1.mlst.json.gz,1.1.1
sample1,https://raw.githubusercontent.com/phac-nml/gasnomenclature/dev/tests/data/reports/sample1.mlst.json.gz,1.1.1
sample2,https://raw.githubusercontent.com/phac-nml/gasnomenclature/dev/tests/data/reports/sample2.mlst.json,1.1.1
sample3,https://raw.githubusercontent.com/phac-nml/gasnomenclature/dev/tests/data/reports/sample3.mlst.json,1.1.2

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