Integration Tests

Integration Tests #6217

Triggered via schedule December 28, 2023 01:52

JeffreyThiessen

⁠ 6bc942e

development

Status Success

Total duration 45m 36s

Artifacts –

This run and associated checks have been archived and are scheduled for deletion. Learn more about checks retention

ci-test.yml

on: schedule

docs-build

5m 46s

Matrix: gradle-build

Annotations

22 errors and 16 warnings

ProjectIT.testCreateProject(): src/test/java/ca/corefacility/bioinformatics/irida/web/controller/test/integration/project/ProjectIT.java#L82

org.opentest4j.AssertionFailedError: Result of POST must equal result of GET ==> expected: <true> but was: <false>

ProjectIT.testCreateProject(): src/test/java/ca/corefacility/bioinformatics/irida/web/controller/test/integration/project/ProjectIT.java#L82

org.opentest4j.AssertionFailedError: Result of POST must equal result of GET ==> expected: <true> but was: <false>

ProjectIT.testCreateProject(): src/test/java/ca/corefacility/bioinformatics/irida/web/controller/test/integration/project/ProjectIT.java#L82

org.opentest4j.AssertionFailedError: Result of POST must equal result of GET ==> expected: <true> but was: <false>

ProjectIT.testCreateProject(): src/test/java/ca/corefacility/bioinformatics/irida/web/controller/test/integration/project/ProjectIT.java#L82

org.opentest4j.AssertionFailedError: Result of POST must equal result of GET ==> expected: <true> but was: <false>

SequencingRunServiceImplIT.testAddSequenceFileToMiseqRunAsAdmin(): src/test/java/ca/corefacility/bioinformatics/irida/service/impl/integration/SequencingRunServiceImplIT.java#L71

org.opentest4j.AssertionFailedError: Saved miseq run should have seqence file ==> expected: <true> but was: <false>

AnalysisExecutionServiceGalaxyIT.testTransferAnalysisResultsSuccessTestAnalysis(): src/test/java/ca/corefacility/bioinformatics/irida/service/analysis/execution/galaxy/impl/integration/AnalysisExecutionServiceGalaxyIT.java#L1267

java.util.concurrent.ExecutionException: java.lang.IllegalStateException: path 12/1/testReference18209553433271350738.fasta does not exist

AnalysisExecutionServiceGalaxyIT.testTransferAnalysisResultsFailInvalidRemoteAnalysisId(): src/test/java/ca/corefacility/bioinformatics/irida/service/analysis/execution/galaxy/impl/integration/AnalysisExecutionServiceGalaxyIT.java#L1414

java.util.concurrent.ExecutionException: java.lang.IllegalStateException: path 19/1/testReference16648481356730669102.fasta does not exist

AnalysisExecutionServiceGalaxyIT.testTransferAnalysisResultsSuccessAssemblyAnnotation(): src/test/java/ca/corefacility/bioinformatics/irida/service/analysis/execution/galaxy/impl/integration/AnalysisExecutionServiceGalaxyIT.java#L1244

org.opentest4j.AssertionFailedError: annotations log should be correct ==> expected: <true> but was: <false>

AnalysisExecutionServiceGalaxyIT.testCleanupCompletedAnalysisFailGalaxy(): src/test/java/ca/corefacility/bioinformatics/irida/service/analysis/execution/galaxy/impl/integration/AnalysisExecutionServiceGalaxyIT.java#L1558

java.util.concurrent.ExecutionException: java.lang.IllegalStateException: path 25/1/testReference17933664680824362593.fasta does not exist

AnalysisExecutionScheduledTaskImplIT.testFullAnalysisRunCleanupFailInvalidRemoteAnalysisId(): src/test/java/ca/corefacility/bioinformatics/irida/service/impl/integration/AnalysisExecutionScheduledTaskImplIT.java#L348

java.util.concurrent.ExecutionException: java.lang.IllegalStateException: path 29/1/testReference14095464693915971429.fasta does not exist

AnalysisExecutionScheduledTaskImplIT.testFullAnalysisRunFailInvalidWorkflowStatus(): src/test/java/ca/corefacility/bioinformatics/irida/service/impl/integration/AnalysisExecutionScheduledTaskImplIT.java#L306

java.util.concurrent.ExecutionException: java.lang.IllegalStateException: path 38/1/testReference2855592689704150685.fasta does not exist

AnalysisExecutionScheduledTaskImplIT.testFullAnalysisRunSuccess(): src/test/java/ca/corefacility/bioinformatics/irida/service/impl/integration/AnalysisExecutionScheduledTaskImplIT.java#L157

java.util.concurrent.ExecutionException: java.lang.IllegalStateException: path 39/1/testReference14340214524080321936.fasta does not exist

CartPageIT.testCartPageAsAdmin(): src/test/java/ca/corefacility/bioinformatics/irida/ria/integration/CartPageIT.java#L241

org.opentest4j.AssertionFailedError: The add cart to sample button should be displayed ==> expected: <true> but was: <false>

LoginPageLdapNoServerIT.testLoginNoLdapServer(): src/test/java/ca/corefacility/bioinformatics/irida/ria/integration/LoginPageLdapNoServerIT.java#L41

org.opentest4j.AssertionFailedError: expected: <http://127.0.0.1:40375/irida/login?ldap-error=6> but was: <http://127.0.0.1:40375/irida/login?error=true>

AnalysisDetailsPageIT.testUnknownPipelineOutput(): src/test/java/ca/corefacility/bioinformatics/irida/ria/integration/analysis/AnalysisDetailsPageIT.java#L450

org.opentest4j.AssertionFailedError: There should be one output file ==> expected: <1> but was: <0>

AnalysisDetailsPageIT.testOutputFiles(): src/test/java/ca/corefacility/bioinformatics/irida/ria/integration/analysis/AnalysisDetailsPageIT.java#L139

org.openqa.selenium.TimeoutException: Expected condition failed: waiting for visibility of element located by By.cssSelector: span[title='Output File Preview'] (tried for 10 second(s) with 500 milliseconds interval) Build info: version: '4.1.4', revision: '535d840ee2' System info: host: 'fv-az1392-739', ip: '10.1.0.11', os.name: 'Linux', os.arch: 'amd64', os.version: '5.15.0-1053-azure', java.version: '11.0.21' Driver info: org.openqa.selenium.chrome.ChromeDriver Capabilities {acceptInsecureCerts: false, browserName: chrome-headless-shell, browserVersion: 120.0.6099.109, chrome: {chromedriverVersion: 120.0.6099.71 (9729082fe617..., userDataDir: /tmp/.org.chromium.Chromium...}, fedcm:accounts: true, goog:chromeOptions: {debuggerAddress: localhost:34053}, javascriptEnabled: true, networkConnectionEnabled: false, pageLoadStrategy: normal, platform: LINUX, platformName: LINUX, proxy: Proxy(), se:cdp: ws://localhost:34053/devtoo..., se:cdpVersion: 120.0.6099.109, setWindowRect: true, strictFileInteractability: false, timeouts: {implicit: 0, pageLoad: 300000, script: 30000}, unhandledPromptBehavior: dismiss and notify, webauthn:extension:credBlob: true, webauthn:extension:largeBlob: true, webauthn:extension:minPinLength: true, webauthn:extension:prf: true, webauthn:virtualAuthenticators: true} Session ID: 80b94523576e57a4b61ef51e69d98964

AnalysisDetailsPageIT.testSistrOutput(): src/test/java/ca/corefacility/bioinformatics/irida/ria/integration/analysis/AnalysisDetailsPageIT.java#L285

org.openqa.selenium.TimeoutException: Expected condition failed: waiting for number of elements found by By.className: ant-page-header-heading-title to be "2". Current number: "1" (tried for 2 second(s) with 500 milliseconds interval) Build info: version: '4.1.4', revision: '535d840ee2' System info: host: 'fv-az1392-739', ip: '10.1.0.11', os.name: 'Linux', os.arch: 'amd64', os.version: '5.15.0-1053-azure', java.version: '11.0.21' Driver info: org.openqa.selenium.chrome.ChromeDriver Capabilities {acceptInsecureCerts: false, browserName: chrome-headless-shell, browserVersion: 120.0.6099.109, chrome: {chromedriverVersion: 120.0.6099.71 (9729082fe617..., userDataDir: /tmp/.org.chromium.Chromium...}, fedcm:accounts: true, goog:chromeOptions: {debuggerAddress: localhost:34053}, javascriptEnabled: true, networkConnectionEnabled: false, pageLoadStrategy: normal, platform: LINUX, platformName: LINUX, proxy: Proxy(), se:cdp: ws://localhost:34053/devtoo..., se:cdpVersion: 120.0.6099.109, setWindowRect: true, strictFileInteractability: false, timeouts: {implicit: 0, pageLoad: 300000, script: 30000}, unhandledPromptBehavior: dismiss and notify, webauthn:extension:credBlob: true, webauthn:extension:largeBlob: true, webauthn:extension:minPinLength: true, webauthn:extension:prf: true, webauthn:virtualAuthenticators: true} Session ID: 80b94523576e57a4b61ef51e69d98964

AnalysisDetailsPageIT.testProvenance(): src/test/java/ca/corefacility/bioinformatics/irida/ria/integration/analysis/AnalysisDetailsPageIT.java#L206

org.openqa.selenium.TimeoutException: Expected condition failed: waiting for visibility of element located by By.cssSelector: span[title='Provenance'] (tried for 10 second(s) with 500 milliseconds interval) Build info: version: '4.1.4', revision: '535d840ee2' System info: host: 'fv-az1392-739', ip: '10.1.0.11', os.name: 'Linux', os.arch: 'amd64', os.version: '5.15.0-1053-azure', java.version: '11.0.21' Driver info: org.openqa.selenium.chrome.ChromeDriver Capabilities {acceptInsecureCerts: false, browserName: chrome-headless-shell, browserVersion: 120.0.6099.109, chrome: {chromedriverVersion: 120.0.6099.71 (9729082fe617..., userDataDir: /tmp/.org.chromium.Chromium...}, fedcm:accounts: true, goog:chromeOptions: {debuggerAddress: localhost:34053}, javascriptEnabled: true, networkConnectionEnabled: false, pageLoadStrategy: normal, platform: LINUX, platformName: LINUX, proxy: Proxy(), se:cdp: ws://localhost:34053/devtoo..., se:cdpVersion: 120.0.6099.109, setWindowRect: true, strictFileInteractability: false, timeouts: {implicit: 0, pageLoad: 300000, script: 30000}, unhandledPromptBehavior: dismiss and notify, webauthn:extension:credBlob: true, webauthn:extension:largeBlob: true, webauthn:extension:minPinLength: true, webauthn:extension:prf: true, webauthn:virtualAuthenticators: true} Session ID: 80b94523576e57a4b61ef51e69d98964

AnalysisDetailsPageIT.testSamplesPage(): src/test/java/ca/corefacility/bioinformatics/irida/ria/integration/analysis/AnalysisDetailsPageIT.java#L236

org.openqa.selenium.StaleElementReferenceException: stale element reference: stale element not found (Session info: chrome-headless-shell=120.0.6099.109) For documentation on this error, please visit: https://selenium.dev/exceptions/#stale_element_reference Build info: version: '4.1.4', revision: '535d840ee2' System info: host: 'fv-az1392-739', ip: '10.1.0.11', os.name: 'Linux', os.arch: 'amd64', os.version: '5.15.0-1053-azure', java.version: '11.0.21' Driver info: org.openqa.selenium.chrome.ChromeDriver Command: [80b94523576e57a4b61ef51e69d98964, isElementDisplayed {id=52A21137CF6BC64630620C6972210932_element_2157}] Capabilities {acceptInsecureCerts: false, browserName: chrome-headless-shell, browserVersion: 120.0.6099.109, chrome: {chromedriverVersion: 120.0.6099.71 (9729082fe617..., userDataDir: /tmp/.org.chromium.Chromium...}, fedcm:accounts: true, goog:chromeOptions: {debuggerAddress: localhost:34053}, javascriptEnabled: true, networkConnectionEnabled: false, pageLoadStrategy: normal, platform: LINUX, platformName: LINUX, proxy: Proxy(), se:cdp: ws://localhost:34053/devtoo..., se:cdpVersion: 120.0.6099.109, setWindowRect: true, strictFileInteractability: false, timeouts: {implicit: 0, pageLoad: 300000, script: 30000}, unhandledPromptBehavior: dismiss and notify, webauthn:extension:credBlob: true, webauthn:extension:largeBlob: true, webauthn:extension:minPinLength: true, webauthn:extension:prf: true, webauthn:virtualAuthenticators: true} Element: [[[[ChromeDriver: chrome-headless-shell on LINUX (80b94523576e57a4b61ef51e69d98964)] -> id: root]] -> css selector: span[title='Samples']] Session ID: 80b94523576e57a4b61ef51e69d98964

AnalysisDetailsPageIT.testPipelineResultsWithoutSpecialTab(): src/test/java/ca/corefacility/bioinformatics/irida/ria/integration/analysis/AnalysisDetailsPageIT.java#L193

org.opentest4j.AssertionFailedError: There should be one output file ==> expected: <1> but was: <0>

AnalysisDetailsPageIT.testTabRoutingAnalysisCompleted(): src/test/java/ca/corefacility/bioinformatics/irida/ria/integration/analysis/AnalysisDetailsPageIT.java#L316

org.openqa.selenium.TimeoutException: Expected condition failed: waiting for number of elements found by By.className: ant-page-header-heading-title to be "2". Current number: "0" (tried for 2 second(s) with 500 milliseconds interval) Build info: version: '4.1.4', revision: '535d840ee2' System info: host: 'fv-az1392-739', ip: '10.1.0.11', os.name: 'Linux', os.arch: 'amd64', os.version: '5.15.0-1053-azure', java.version: '11.0.21' Driver info: org.openqa.selenium.chrome.ChromeDriver Capabilities {acceptInsecureCerts: false, browserName: chrome-headless-shell, browserVersion: 120.0.6099.109, chrome: {chromedriverVersion: 120.0.6099.71 (9729082fe617..., userDataDir: /tmp/.org.chromium.Chromium...}, fedcm:accounts: true, goog:chromeOptions: {debuggerAddress: localhost:34053}, javascriptEnabled: true, networkConnectionEnabled: false, pageLoadStrategy: normal, platform: LINUX, platformName: LINUX, proxy: Proxy(), se:cdp: ws://localhost:34053/devtoo..., se:cdpVersion: 120.0.6099.109, setWindowRect: true, strictFileInteractability: false, timeouts: {implicit: 0, pageLoad: 300000, script: 30000}, unhandledPromptBehavior: dismiss and notify, webauthn:extension:credBlob: true, webauthn:extension:largeBlob: true, webauthn:extension:minPinLength: true, webauthn:extension:prf: true, webauthn:virtualAuthenticators: true} Session ID: 80b94523576e57a4b61ef51e69d98964

AnalysisDetailsPageIT.testTreeOutput(): src/test/java/ca/corefacility/bioinformatics/irida/ria/integration/analysis/AnalysisDetailsPageIT.java#L379

org.openqa.selenium.TimeoutException: Expected condition failed: waiting for number of elements found by By.className: ant-page-header-heading-title to be "2". Current number: "0" (tried for 2 second(s) with 500 milliseconds interval) Build info: version: '4.1.4', revision: '535d840ee2' System info: host: 'fv-az1392-739', ip: '10.1.0.11', os.name: 'Linux', os.arch: 'amd64', os.version: '5.15.0-1053-azure', java.version: '11.0.21' Driver info: org.openqa.selenium.chrome.ChromeDriver Capabilities {acceptInsecureCerts: false, browserName: chrome-headless-shell, browserVersion: 120.0.6099.109, chrome: {chromedriverVersion: 120.0.6099.71 (9729082fe617..., userDataDir: /tmp/.org.chromium.Chromium...}, fedcm:accounts: true, goog:chromeOptions: {debuggerAddress: localhost:34053}, javascriptEnabled: true, networkConnectionEnabled: false, pageLoadStrategy: normal, platform: LINUX, platformName: LINUX, proxy: Proxy(), se:cdp: ws://localhost:34053/devtoo..., se:cdpVersion: 120.0.6099.109, setWindowRect: true, strictFileInteractability: false, timeouts: {implicit: 0, pageLoad: 300000, script: 30000}, unhandledPromptBehavior: dismiss and notify, webauthn:extension:credBlob: true, webauthn:extension:largeBlob: true, webauthn:extension:minPinLength: true, webauthn:extension:prf: true, webauthn:virtualAuthenticators: true} Session ID: 80b94523576e57a4b61ef51e69d98964

gradle-build (open_api_testing)

The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-java@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

gradle-build (open_api_testing)

The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/

gradle-build (file_system_testing)