.wordlist.txt

ECTyper
IRIDA
SISTR
StarAMR
JSON
UI
Bakta
Nextflow
fastp
pointfinder
mikrokondo
subtyping
phac
nml
metagenomic
mikrokondo
StarAMR
readme
nf
iridanext
contig
contigs
Quast
AMR
kat
genomic
bakta
SeqtkBaseCount
locidex
Kraken
params
param
minimap
irida
config
StackOverflow
maxRetries
samtools
QCSummary
QCMessage
Changelog
Biotechnol
doi
Shigella
Vibrio
Alneberg
Andreas
Ewels
Fillinger
Harshil
Maxime
Nahnsen
Paolo
Peltzer
Tommaso
Ulysse
Wilm
bioinformatics
https
oschwengers
Flye
pacbio
Nanopore
Illumina
FinalReads
FinalReports
PostProcessing
FinalAssembly
Subworkflow
outdir
useage
FOFN
fasta
fastq
gzip
speciation
GTDB
Apptainer
arounds
Apptainer
apptainer
charliecloud
gitpod
podman
shifter
aspc
gc
https
genotypic
bioinformatic
pre
AminoAcid
Archae
CPUs
CheckM
Eukaryotic
Gloval
Kmer
MLST
Miniumum
PathCheck
Seemann's
Torsten
Za
abricate
allOf
ambig
autodetection
cgMLST
cgmlst
checkm
coli
configs
copyNoFollow
cov
cpus
csv
dedup
deduplication
dehosting
enum
evalue
fas
fp
githubusercontent
hifi
hpcov
hpid
ident
identiy
idx
kitome
kmer
longread
lx
mh
mimetype
mlst
mobrecon
nNote
nTypically
opcov
opid
phred
plaintext
plasmid
polyG
polyX
polyg
polyx
rellink
repo
runtime
seqs
serotyping
slurm
snps
symlink
tracedir
unicycler
validationFailUnrecognisedParams
validationShowHiddenParams
zA
kondo
gz
fq
ast
dependentRequired
errorMessage
Samplesheet
TSeemann's
RASUSA
downsampling
Christy
Marinier
Petkau
gzipped
monocytogenes