phac-nml/snvphylnfc: Changelog

The format is based on Keep a Changelog and this project adheres to Semantic Versioning.

2.2.0 - 2024/10/21

Modified the template for input csv file to include a sample_name column in addition to sample in-line with changes to IRIDA-Next update as seen with the speciesabundance pipeline
- sample_name special characters will be replaced with "_"
- If no sample_name is supplied in the column sample will be used
- To avoid repeat values for sample_name all sample_name values will be suffixed with the unique sample value from the input file
Fixed linting issues in CI caused by nf-core 3.0.1

2.1.1 - 2024/08/21

`Changed`

Container registry for aborview switched from docker.io to quay.io/biocontainers (python:3.11.6 to python:3.12)

2.1.0 - 2024/07/09

`Added`

Support for including contextual metadata in the input samplesheet: See PR 22
ArborView HTML app functionality for viewing dendograms with contextual metadata: See PR 22

2.0.2 - 2024/05/21

`Added`

Support for compressed (GZIP-formatted) reference files.

2.0.1 - 2024/02/23

`Changed`

Pinned Nextflow plugins to specific versions ([email protected] and [email protected])

2.0.0 - 2024/02/14

`Added`

The initial release of phac-nml/snvphylnfc as a Nextflow pipeline follwing nf-core pipeline standards.

`Changed`

Migrated SNVPhyl to a Nextflow pipeline.
Updated the major SNVPhyl release version from 1 to 2 in order to reflect the migration from a Galaxy-based pipeline to a Nextflow-based pipeline.

`Deprecated`

`Fixed`

`Dependencies`