From 0c83d36498522c2a6e78c98ea3b192c215761071 Mon Sep 17 00:00:00 2001
From: david <david.holmberg@farmbio.uu.se>
Date: Fri, 11 Oct 2024 13:07:03 +0200
Subject: [PATCH] working version, I hope

---
 .inputrc                   |  1 +
 build-local-docker.sh      |  2 +-
 docker/env.cuda.Dockerfile | 20 +++++++++-----------
 3 files changed, 11 insertions(+), 12 deletions(-)

diff --git a/.inputrc b/.inputrc
index 7b371c1..f1aab0a 100644
--- a/.inputrc
+++ b/.inputrc
@@ -103,3 +103,4 @@ set enable-bracketed-paste
 set enable-bracketed-paste
 set enable-bracketed-paste
 set enable-bracketed-paste
+set enable-bracketed-paste
diff --git a/build-local-docker.sh b/build-local-docker.sh
index 8001c6a..f5dd312 100755
--- a/build-local-docker.sh
+++ b/build-local-docker.sh
@@ -14,7 +14,7 @@ echo "image=$image"
 # docker buildx build --no-cache -t ghcr.io/pharmbio/$image:$tag \
 #              --build-arg BASE_IMAGE=tensorflow/tensorflow:${tensorflow_version}-jupyter \
 #              -f ./docker/env.cpu.Dockerfile . || exit 1
-DOCKER_BUILDKIT=1 docker buildx build --no-cache -t ghcr.io/pharmbio/$image:${tag}-gpu \
+docker buildx build --no-cache -t ghcr.io/pharmbio/$image:${tag}-gpu \
              --build-arg BASE_IMAGE=tensorflow/tensorflow:${tensorflow_version}-gpu-jupyter \
              -f docker/env.cuda.Dockerfile . || exit 1
 
diff --git a/docker/env.cuda.Dockerfile b/docker/env.cuda.Dockerfile
index 99cb734..96e24f9 100644
--- a/docker/env.cuda.Dockerfile
+++ b/docker/env.cuda.Dockerfile
@@ -17,8 +17,8 @@ RUN ln -snf /usr/share/zoneinfo/$TZ /etc/localtime && echo $TZ > /etc/timezone
 ENV DEBIAN_FRONTEND=noninteractive
 # >apt_installs.txt to save instead of executing
 RUN <<EOF
- apt-get update
- apt-get install -y --no-install-recommends \
+apt-get update
+apt-get install -y --no-install-recommends \
     apt-transport-https \
     ca-certificates \
     software-properties-common \
@@ -61,18 +61,16 @@ RUN python3 -m pip install --no-cache-dir --upgrade pip && \
 
 
 # Breakpoint - temporary shell for debugging
-RUN --mount=type=cache,target=/tmp \
-    echo "Entering breakpoint shell"; \
-    sleep infinity
+# RUN --mount=type=cache,target=/tmp \
+#     echo "Entering breakpoint shell"; \
+#     sleep infinity
 
-RUN echo "Step 2: Continuing after breakpoint"
+# RUN echo "Step 2: Continuing after breakpoint"
 
 RUN <<EOF 
-        echo "Installing for CUDA framework" 
-        python3 -m pip install --no-cache-dir --index-url https://download.pytorch.org/whl/cu121 \ 
-                torch==2.4.1 \
-                torchvision \
-                torchaudio;
+python3 -m pip install --no-cache-dir --index-url https://download.pytorch.org/whl/cu121 torch==2.4.1 \
+        torchvision \
+        torchaudio;
 EOF
 
 # RUN python3 -m pip install --no-cache-dir --index-url https://download.pytorch.org/whl/cu121 \