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annotations.ofn
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annotations.ofn
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Prefix(:=<http://purl.org/phenoscape/demo/homology/annotations.ofn#>)
Prefix(owl:=<http://www.w3.org/2002/07/owl#>)
Prefix(rdf:=<http://www.w3.org/1999/02/22-rdf-syntax-ns#>)
Prefix(xml:=<http://www.w3.org/XML/1998/namespace>)
Prefix(xsd:=<http://www.w3.org/2001/XMLSchema#>)
Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)
Ontology(<http://purl.org/phenoscape/demo/homology/annotations.ofn>
Declaration(Class(<http://purl.obolibrary.org/obo/NCBITaxon_10090>))
Declaration(Class(<http://purl.obolibrary.org/obo/PATO_0000051>))
Declaration(Class(<http://purl.obolibrary.org/obo/PATO_0000122>))
Declaration(Class(<http://purl.obolibrary.org/obo/PATO_0000140>))
Declaration(Class(<http://purl.obolibrary.org/obo/PATO_0000141>))
Declaration(Class(<http://purl.obolibrary.org/obo/PATO_0000460>))
Declaration(Class(<http://purl.obolibrary.org/obo/PATO_0000467>))
Declaration(Class(<http://purl.obolibrary.org/obo/PATO_0000574>))
Declaration(Class(<http://purl.obolibrary.org/obo/PATO_0000587>))
Declaration(Class(<http://purl.obolibrary.org/obo/PATO_0000645>))
Declaration(Class(<http://purl.obolibrary.org/obo/PATO_0001483>))
Declaration(Class(<http://purl.obolibrary.org/obo/PATO_0001784>))
Declaration(Class(<http://purl.obolibrary.org/obo/PATO_0002002>))
Declaration(Class(<http://purl.obolibrary.org/obo/PATO_0002261>))
Declaration(Class(<http://purl.obolibrary.org/obo/PATO_0002445>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0000024>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0000151>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0000152>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0000154>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0000976>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0001463>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0002101>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0002102>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0002103>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0002398>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0002531>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0002534>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0003221>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0003631>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0003632>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0004347>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0004741>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0005417>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0005418>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0009749>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0010328>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0011677>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0012136>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_4000175>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_4200003>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_4300172>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_4300239>))
Declaration(Class(<http://purl.obolibrary.org/obo/VTO_0002590>))
Declaration(Class(<http://purl.obolibrary.org/obo/VTO_0008116>))
Declaration(Class(<http://purl.obolibrary.org/obo/VTO_0008902>))
Declaration(Class(<http://purl.obolibrary.org/obo/VTO_0009815>))
Declaration(Class(<http://purl.obolibrary.org/obo/VTO_0010481>))
Declaration(Class(<http://purl.obolibrary.org/obo/VTO_0011379>))
Declaration(Class(<http://purl.obolibrary.org/obo/VTO_0014661>))
Declaration(Class(<http://purl.obolibrary.org/obo/VTO_0037956>))
Declaration(Class(<http://purl.obolibrary.org/obo/VTO_0038614>))
Declaration(Class(<http://purl.obolibrary.org/obo/VTO_0039818>))
Declaration(Class(<http://purl.obolibrary.org/obo/VTO_0055067>))
Declaration(Class(<http://purl.obolibrary.org/obo/VTO_9001290>))
Declaration(Class(<http://purl.obolibrary.org/obo/VTO_9003126>))
Declaration(Class(<http://purl.obolibrary.org/obo/VTO_9007897>))
Declaration(Class(<http://purl.obolibrary.org/obo/VTO_9010171>))
Declaration(Class(<http://purl.obolibrary.org/obo/VTO_9011119>))
Declaration(Class(<http://purl.obolibrary.org/obo/VTO_9030624>))
Declaration(Class(<http://purl.obolibrary.org/obo/uberon/ext.owl/UBERON_4300172>))
Declaration(Class(:Question1))
Declaration(Class(:Question2))
Declaration(Class(:Question3))
Declaration(Class(:Question4))
Declaration(Class(:Question5))
Declaration(Class(:Question6))
Declaration(Class(:Question7))
Declaration(Class(:_CompetencyQuestion))
Declaration(Class(:forelimb_bud_mesenchyme))
Declaration(Class(:forelimb_wing_bud))
Declaration(Class(:pectoral_fin_ray))
Declaration(ObjectProperty(<http://purl.obolibrary.org/obo/RO_0000052>))
Declaration(ObjectProperty(<http://purl.obolibrary.org/obo/RO_0002162>))
Declaration(ObjectProperty(<http://purl.obolibrary.org/obo/RO_0002503>))
Declaration(ObjectProperty(<http://purl.obolibrary.org/obo/RO_HOM0000007>))
Declaration(ObjectProperty(<http://purl.obolibrary.org/obo/RO_HOM0000027>))
Declaration(NamedIndividual(:e10))
Declaration(NamedIndividual(:e11))
Declaration(NamedIndividual(:e12))
Declaration(NamedIndividual(:e13))
Declaration(NamedIndividual(:e14))
Declaration(NamedIndividual(:e15))
Declaration(NamedIndividual(:e16))
Declaration(NamedIndividual(:e17))
Declaration(NamedIndividual(:e18))
Declaration(NamedIndividual(:e19))
Declaration(NamedIndividual(:e2))
Declaration(NamedIndividual(:e20))
Declaration(NamedIndividual(:e21))
Declaration(NamedIndividual(:e22))
Declaration(NamedIndividual(:e23))
Declaration(NamedIndividual(:e24))
Declaration(NamedIndividual(:e3))
Declaration(NamedIndividual(:e4))
Declaration(NamedIndividual(:e5))
Declaration(NamedIndividual(:e6))
Declaration(NamedIndividual(:e7))
Declaration(NamedIndividual(:e8))
Declaration(NamedIndividual(:e9))
Declaration(NamedIndividual(:q10))
Declaration(NamedIndividual(:q11))
Declaration(NamedIndividual(:q12))
Declaration(NamedIndividual(:q13))
Declaration(NamedIndividual(:q14))
Declaration(NamedIndividual(:q15))
Declaration(NamedIndividual(:q16))
Declaration(NamedIndividual(:q17))
Declaration(NamedIndividual(:q18))
Declaration(NamedIndividual(:q19))
Declaration(NamedIndividual(:q2))
Declaration(NamedIndividual(:q20))
Declaration(NamedIndividual(:q21))
Declaration(NamedIndividual(:q22))
Declaration(NamedIndividual(:q23))
Declaration(NamedIndividual(:q24))
Declaration(NamedIndividual(:q3))
Declaration(NamedIndividual(:q4))
Declaration(NamedIndividual(:q5))
Declaration(NamedIndividual(:q6))
Declaration(NamedIndividual(:q7))
Declaration(NamedIndividual(:q8))
Declaration(NamedIndividual(:q9))
Declaration(NamedIndividual(:re10))
Declaration(NamedIndividual(:re12))
Declaration(NamedIndividual(:re2))
Declaration(NamedIndividual(:re3))
Declaration(NamedIndividual(:re5))
Declaration(NamedIndividual(:re9))
Declaration(NamedIndividual(:t10))
Declaration(NamedIndividual(:t11))
Declaration(NamedIndividual(:t12))
Declaration(NamedIndividual(:t13))
Declaration(NamedIndividual(:t14))
Declaration(NamedIndividual(:t15))
Declaration(NamedIndividual(:t16))
Declaration(NamedIndividual(:t17))
Declaration(NamedIndividual(:t18))
Declaration(NamedIndividual(:t19))
Declaration(NamedIndividual(:t2))
Declaration(NamedIndividual(:t20))
Declaration(NamedIndividual(:t21))
Declaration(NamedIndividual(:t22))
Declaration(NamedIndividual(:t23))
Declaration(NamedIndividual(:t24))
Declaration(NamedIndividual(:t3))
Declaration(NamedIndividual(:t4))
Declaration(NamedIndividual(:t5))
Declaration(NamedIndividual(:t6))
Declaration(NamedIndividual(:t7))
Declaration(NamedIndividual(:t8))
Declaration(NamedIndividual(:t9))
Declaration(AnnotationProperty(<http://purl.org/dc/terms/source>))
############################
# Classes
############################
# Class: <http://purl.obolibrary.org/obo/UBERON_4300172> (<http://purl.obolibrary.org/obo/UBERON_4300172>)
EquivalentClasses(<http://purl.obolibrary.org/obo/UBERON_4300172> <http://purl.obolibrary.org/obo/uberon/ext.owl/UBERON_4300172>)
# Class: :Question1 (:Question1)
AnnotationAssertion(rdfs:comment :Question1 "The user expects a phenotype query for historical homologues of ‘pectoral fin’ to return phenotypes for its homologue ‘forelimb’ and its homologue’s subtype ‘forelimb wing’, as illustrated in Figure 2. The user does not expect the query to return phenotypes for parts of the homologue, such as ‘humerus’, nor phenotypes for the serial homologue of the homologue (‘hindlimb’). Further, they do not expect it to return phenotypes for the homologue’s developmental precursor ‘forelimb bud’.
Expect: 3, 4
Not: 10, 11, 12, 13"^^xsd:string)
EquivalentClasses(:Question1 ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_HOM0000007> <http://purl.obolibrary.org/obo/UBERON_0000151>)))
SubClassOf(:Question1 :_CompetencyQuestion)
# Class: :Question2 (:Question2)
AnnotationAssertion(rdfs:comment :Question2 "The user expects a phenotype query for historical homologues of ‘forelimb wing’ to return phenotypes for ‘forelimb’, ‘pectoral fin’, and subclasses of ‘pectoral fin’ such as ‘archipterygial fin’ (Figure 2). They do not expect to be returned structures including parts (e.g., ‘humerus’ or ‘pectoral fin ray’) of the homologues, serial homologues (‘hindlimb’ or ‘pelvic fin’) of the homologues, and developmental precursors (‘forelimb bud’ or ‘pectoral fin bud’) of the homologues.
Expect: 2, 3, 8"^^xsd:string)
EquivalentClasses(:Question2 ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_HOM0000007> <http://purl.obolibrary.org/obo/UBERON_0000024>)))
SubClassOf(:Question2 :_CompetencyQuestion)
# Class: :Question3 (:Question3)
AnnotationAssertion(rdfs:comment :Question3 "The user expects a query for historical homologues of ‘pectoral fin bud’ to return phenotypes for ‘forelimb bud’ and its subtype ‘forelimb wing bud’ (Figure 2). They do not expect it to return phenotypes to parts (‘forelimb bud mesenchyme’), structures that form later in the course of development (‘forelimb’), or serial homologues (‘hindlimb bud’) of the historical homologues.
Expect: 21, 22
Not: 3, 17, 23"^^xsd:string)
EquivalentClasses(:Question3 ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_HOM0000007> <http://purl.obolibrary.org/obo/uberon/ext.owl/UBERON_4300172>)))
SubClassOf(:Question3 :_CompetencyQuestion)
# Class: :Question4 (:Question4)
AnnotationAssertion(rdfs:comment :Question4 "In cases where the homology statement selectively applies to a subset of taxa that possess the anatomical structure, though other taxa may ostensibly possess it as well, the user expects results for only a restricted set of taxa. The user expects a query for the historical homologues of ‘pedal digit 1’ to return ‘prehallux’ phenotypes for only anurans (frogs) and not ‘prehallux’ phenotypes for mammals (bats in our example) (Figure 2). This is because the homology relationship is specific to Anura and pedal digit 1.
Expect: 7
Not: 6"^^xsd:string)
EquivalentClasses(:Question4 ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_HOM0000007> <http://purl.obolibrary.org/obo/UBERON_0003631>)))
SubClassOf(:Question4 :_CompetencyQuestion)
# Class: :Question5 (:Question5)
AnnotationAssertion(rdfs:comment :Question5 "From a query on serial homologues of ‘hindlimb’, the user expects to find phenotypes for ‘forelimb’ and its subtype ‘forelimb wing’ (Figure 3). They do not expect the subtype of the search term (‘hind flipper’) to be returned, or the historical homologues of the serial homologue (‘pectoral fin’) to be returned. Further, they do not expect phenotypes to parts of the homologue’s serial homologue (e.g., ‘humerus’ of the ‘forelimb’), or their developmental precursor (‘forelimb bud’ and ‘forelimb wing bud’).
Expect: 3, 4
Not: 2, 9, 20, 21, 22"^^xsd:string)
EquivalentClasses(:Question5 ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_HOM0000027> <http://purl.obolibrary.org/obo/UBERON_0002103>)))
SubClassOf(:Question5 :_CompetencyQuestion)
# Class: :Question6 (:Question6)
AnnotationAssertion(rdfs:comment :Question6 "The user expects that a query for serial homologues of 'hindlimb bud' would return phenotypes for ‘forelimb bud’ and its subtype 'forelimb wing bud' (Figure 3), but not its developmental product 'forelimb', nor its parts (‘forelimb bud mesenchyme’), or its serial homologue ('pectoral fin bud’).
Expect: 21, 22
Not: 3, 15, 23"^^xsd:string)
EquivalentClasses(:Question6 ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_HOM0000027> <http://purl.obolibrary.org/obo/UBERON_0005418>)))
SubClassOf(:Question6 :_CompetencyQuestion)
# Class: :Question7 (:Question7)
AnnotationAssertion(rdfs:comment :Question7 "The user expects a phenotype query for serial homologues of ‘hind flipper’ to return phenotypes for its serial homologue ‘forelimb’, and subclasses of ‘forelimb’ such as ‘forelimb wing’, as illustrated in Figure 3. The user does not expect the query to return return the superclass of the search term (‘hindlimb’), structures for parts (e.g., ‘humerus’, ‘femur’) of the serial homologues, historical homologues (e.g., ‘pectoral fin’) of the serial homologues, or developmental precursors (e.g., ‘hindlimb bud’, ‘forelimb bud’) of the serial homologues.
Expect: 3, 4
Not: 2, 9, 11, 17, 21"^^xsd:string)
EquivalentClasses(:Question7 ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_HOM0000027> <http://purl.obolibrary.org/obo/UBERON_4300239>)))
SubClassOf(:Question7 :_CompetencyQuestion)
# Class: :forelimb_bud_mesenchyme (:forelimb_bud_mesenchyme)
SubClassOf(:forelimb_bud_mesenchyme <http://purl.obolibrary.org/obo/UBERON_0010328>)
# Class: :forelimb_wing_bud (:forelimb_wing_bud)
AnnotationAssertion(rdfs:comment :forelimb_wing_bud "forelimb wing bud"^^xsd:string)
SubClassOf(:forelimb_wing_bud <http://purl.obolibrary.org/obo/UBERON_0005417>)
# Class: :pectoral_fin_ray (:pectoral_fin_ray)
SubClassOf(:pectoral_fin_ray <http://purl.obolibrary.org/obo/UBERON_4000175>)
############################
# Named Individuals
############################
# Individual: :e10 (pelvic fin#e10)
AnnotationAssertion(rdfs:label :e10 "pelvic fin#e10"^^xsd:string)
ClassAssertion(<http://purl.obolibrary.org/obo/UBERON_0000152> :e10)
ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/RO_0002162> :e10 :t10)
# Individual: :e11 (hindlimb#e11)
AnnotationAssertion(rdfs:label :e11 "hindlimb#e11"^^xsd:string)
ClassAssertion(<http://purl.obolibrary.org/obo/UBERON_0002103> :e11)
ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/RO_0002162> :e11 :t11)
# Individual: :e12 (manus#e12)
AnnotationAssertion(rdfs:label :e12 "manus#e12"^^xsd:string)
ClassAssertion(<http://purl.obolibrary.org/obo/UBERON_0002398> :e12)
ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/RO_0002162> :e12 :t12)
# Individual: :e13 (manual digit 1#e13)
AnnotationAssertion(rdfs:label :e13 "manual digit 1#e13"^^xsd:string)
ClassAssertion(<http://purl.obolibrary.org/obo/UBERON_0001463> :e13)
ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/RO_0002162> :e13 :t13)
# Individual: :e14 (limb bud#e14)
AnnotationAssertion(rdfs:label :e14 "limb bud#e14"^^xsd:string)
ClassAssertion(<http://purl.obolibrary.org/obo/UBERON_0004347> :e14)
ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/RO_0002162> :e14 :t14)
# Individual: :e15 (pectoral fin bud#e15)
AnnotationAssertion(rdfs:label :e15 "pectoral fin bud#e15"^^xsd:string)
ClassAssertion(<http://purl.obolibrary.org/obo/uberon/ext.owl/UBERON_4300172> :e15)
ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/RO_0002162> :e15 :t15)
# Individual: :e16 (paired fin bud#e16)
AnnotationAssertion(rdfs:label :e16 "paired fin bud#e16"^^xsd:string)
ClassAssertion(<http://purl.obolibrary.org/obo/UBERON_0002531> :e16)
ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/RO_0002162> :e16 :t16)
# Individual: :e17 (hindlimb bud#e17)
AnnotationAssertion(rdfs:label :e17 "hindlimb bud#e17"^^xsd:string)
ClassAssertion(<http://purl.obolibrary.org/obo/UBERON_0005418> :e17)
ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/RO_0002162> :e17 :t17)
# Individual: :e18 (limb mesenchyme#e18)
AnnotationAssertion(rdfs:label :e18 "limb mesenchyme#e18"^^xsd:string)
ClassAssertion(<http://purl.obolibrary.org/obo/UBERON_0009749> :e18)
ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/RO_0002162> :e18 :t18)
# Individual: :e19 (limb#e19)
AnnotationAssertion(rdfs:label :e19 "limb#e19"^^xsd:string)
ClassAssertion(<http://purl.obolibrary.org/obo/UBERON_0002101> :e19)
ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/RO_0002162> :e19 :t19)
# Individual: :e2 (pectoral fin#e2)
AnnotationAssertion(rdfs:label :e2 "pectoral fin#e2"^^xsd:string)
ClassAssertion(<http://purl.obolibrary.org/obo/UBERON_0000151> :e2)
ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/RO_0002162> :e2 :t2)
# Individual: :e20 (hind flipper#e20)
AnnotationAssertion(rdfs:label :e20 "hind flipper#e20"^^xsd:string)
ClassAssertion(<http://purl.obolibrary.org/obo/UBERON_4300239> :e20)
ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/RO_0002162> :e20 :t20)
# Individual: :e21 (forelimb bud#e21)
AnnotationAssertion(rdfs:label :e21 "forelimb bud#e21"^^xsd:string)
ClassAssertion(<http://purl.obolibrary.org/obo/UBERON_0005417> :e21)
ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/RO_0002162> :e21 :t21)
# Individual: :e22 (forelimb wing bud#e22)
AnnotationAssertion(rdfs:label :e22 "forelimb wing bud#e22"^^xsd:string)
ClassAssertion(:forelimb_wing_bud :e22)
ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/RO_0002162> :e22 :t22)
# Individual: :e23 (forelimb bud mesenchyme#e23)
AnnotationAssertion(rdfs:label :e23 "forelimb bud mesenchyme#e23"^^xsd:string)
ClassAssertion(:forelimb_bud_mesenchyme :e23)
ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/RO_0002162> :e23 :t23)
# Individual: :e24 (pectoral fin ray#e24)
AnnotationAssertion(rdfs:label :e24 "pectoral fin ray#e24"^^xsd:string)
ClassAssertion(:pectoral_fin_ray :e24)
ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/RO_0002162> :e24 :t24)
# Individual: :e3 (forelimb#e3)
AnnotationAssertion(rdfs:label :e3 "forelimb#e3"^^xsd:string)
ClassAssertion(<http://purl.obolibrary.org/obo/UBERON_0002102> :e3)
ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/RO_0002162> :e3 :t3)
# Individual: :e4 (forelimb wing#e4)
AnnotationAssertion(rdfs:label :e4 "forelimb wing#e4"^^xsd:string)
ClassAssertion(<http://purl.obolibrary.org/obo/UBERON_0000024> :e4)
ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/RO_0002162> :e4 :t4)
# Individual: :e5 (pedal digit 1#e5)
AnnotationAssertion(rdfs:label :e5 "pedal digit 1#e5"^^xsd:string)
ClassAssertion(<http://purl.obolibrary.org/obo/UBERON_0003631> :e5)
ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/RO_0002162> :e5 :t5)
# Individual: :e6 (prehallux#e6)
AnnotationAssertion(rdfs:label :e6 "prehallux#e6"^^xsd:string)
ClassAssertion(<http://purl.obolibrary.org/obo/UBERON_0012136> :e6)
ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/RO_0002162> :e6 :t6)
# Individual: :e7 (prehallux#e7)
AnnotationAssertion(rdfs:label :e7 "prehallux#e7"^^xsd:string)
ClassAssertion(<http://purl.obolibrary.org/obo/UBERON_0012136> :e7)
ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/RO_0002162> :e7 :t7)
# Individual: :e8 (archipterygial fin#e8)
AnnotationAssertion(rdfs:label :e8 "archipterygial fin#e8"^^xsd:string)
ClassAssertion(<http://purl.obolibrary.org/obo/UBERON_4200003> :e8)
ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/RO_0002162> :e8 :t8)
# Individual: :e9 (humerus#e9)
AnnotationAssertion(rdfs:label :e9 "humerus#e9"^^xsd:string)
ClassAssertion(<http://purl.obolibrary.org/obo/UBERON_0000976> :e9)
ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/RO_0002162> :e9 :t9)
# Individual: :q10 (located in#q10)
AnnotationAssertion(<http://purl.org/dc/terms/source> :q10 "Parenti 2008"^^xsd:string)
AnnotationAssertion(rdfs:comment :q10 "Pelvic-fin position: pelvic fins posterior, in line with pleural rib of vertebra eight or higher"^^xsd:string)
AnnotationAssertion(rdfs:label :q10 "located in#q10"^^xsd:string)
ClassAssertion(<http://purl.obolibrary.org/obo/PATO_0002261> :q10)
ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/RO_0000052> :q10 :e10)
ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/RO_0002503> :q10 :re10)
# Individual: :q11 (decreased length#q11)
AnnotationAssertion(<http://purl.org/dc/terms/source> :q11 "Gao and Wang 2001"^^xsd:string)
AnnotationAssertion(rdfs:comment :q11 "Hind limb proportions: normal length"^^xsd:string)
AnnotationAssertion(rdfs:label :q11 "decreased length#q11"^^xsd:string)
ClassAssertion(<http://purl.obolibrary.org/obo/PATO_0000574> :q11)
ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/RO_0000052> :q11 :e11)
# Individual: :q12 (has extra parts of type#q12)
AnnotationAssertion(<http://purl.org/dc/terms/source> :q12 "O'Leary et al. 2013"^^xsd:string)
AnnotationAssertion(rdfs:comment :q12 "Manual phalanges, Hyperphalangy on manus, presence: absent"^^xsd:string)
AnnotationAssertion(rdfs:label :q12 "has extra parts of type#q12"^^xsd:string)
ClassAssertion(<http://purl.obolibrary.org/obo/PATO_0002002> :q12)
ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/RO_0000052> :q12 :e12)
ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/RO_0002503> :q12 :re12)
# Individual: :q13 (torsioned#q13)
AnnotationAssertion(<http://purl.org/dc/terms/source> :q13 "Lathrop 1997"^^xsd:string)
AnnotationAssertion(rdfs:comment :q13 "Torsion of the first finger (TORSION): present"^^xsd:string)
AnnotationAssertion(rdfs:label :q13 "torsioned#q13"^^xsd:string)
ClassAssertion(<http://purl.obolibrary.org/obo/PATO_0002445> :q13)
ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/RO_0000052> :q13 :e13)
# Individual: :q14 (decreased size#q14)
AnnotationAssertion(<http://purl.org/dc/terms/source> :q14 "MGI:J:185330"^^xsd:string)
AnnotationAssertion(rdfs:label :q14 "decreased size#q14"^^xsd:string)
ClassAssertion(<http://purl.obolibrary.org/obo/PATO_0000587> :q14)
ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/RO_0000052> :q14 :e14)
# Individual: :q15 (aplastic#q15)
AnnotationAssertion(<http://purl.org/dc/terms/source> :q15 "ZFIN:ZDB-FIG-100519-3"^^xsd:string)
AnnotationAssertion(rdfs:label :q15 "aplastic#q15"^^xsd:string)
ClassAssertion(<http://purl.obolibrary.org/obo/PATO_0001483> :q15)
ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/RO_0000052> :q15 :e15)
# Individual: :q16 (hypoplastic#q16)
AnnotationAssertion(<http://purl.org/dc/terms/source> :q16 "ZFIN:ZDB-FIG-140516-12"^^xsd:string)
AnnotationAssertion(rdfs:label :q16 "hypoplastic#q16"^^xsd:string)
ClassAssertion(<http://purl.obolibrary.org/obo/PATO_0000645> :q16)
ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/RO_0000052> :q16 :e16)
# Individual: :q17 (decreased size#q17)
AnnotationAssertion(<http://purl.org/dc/terms/source> :q17 "MGI:0013169"^^xsd:string)
AnnotationAssertion(rdfs:label :q17 "decreased size#q17"^^xsd:string)
ClassAssertion(<http://purl.obolibrary.org/obo/PATO_0000587> :q17)
ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/RO_0000052> :q17 :e17)
# Individual: :q18 (abnormal morphology#q18)
AnnotationAssertion(<http://purl.org/dc/terms/source> :q18 "MGI:J:168038"^^xsd:string)
AnnotationAssertion(rdfs:label :q18 "abnormal morphology#q18"^^xsd:string)
ClassAssertion(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0000051> <http://purl.obolibrary.org/obo/PATO_0000460>) :q18)
ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/RO_0000052> :q18 :e18)
# Individual: :q19 (decreased length#q19)
AnnotationAssertion(<http://purl.org/dc/terms/source> :q19 "Gauthier et al. 1988"^^xsd:string)
AnnotationAssertion(rdfs:comment :q19 "Limbs: short and stout"^^xsd:string)
AnnotationAssertion(rdfs:label :q19 "decreased length#q19"^^xsd:string)
ClassAssertion(<http://purl.obolibrary.org/obo/PATO_0000574> :q19)
ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/RO_0000052> :q19 :e19)
# Individual: :q2 (position#q2)
AnnotationAssertion(<http://purl.org/dc/terms/source> :q2 "Lucena-Menezes 1998"^^xsd:string)
AnnotationAssertion(rdfs:comment :q2 "Origin of pectoral fin: anterior to vertical line tangential to posteriorrnost border of cleithrum"^^xsd:string)
AnnotationAssertion(rdfs:label :q2 "position#q2"^^xsd:string)
ClassAssertion(<http://purl.obolibrary.org/obo/PATO_0000140> :q2)
ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/RO_0000052> :q2 :e2)
ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/RO_0002503> :q2 :re2)
# Individual: :q20 (present#q20)
AnnotationAssertion(<http://purl.org/dc/terms/source> :q20 "Tarasof and Fisher 1970"^^xsd:string)
AnnotationAssertion(rdfs:comment :q20 "hind flipper present"^^xsd:string)
AnnotationAssertion(rdfs:label :q20 "present#q20"^^xsd:string)
ClassAssertion(<http://purl.obolibrary.org/obo/PATO_0000467> :q20)
ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/RO_0000052> :q20 :e20)
# Individual: :q21 (present#q21)
AnnotationAssertion(rdfs:label :q21 "present#q21"^^xsd:string)
ClassAssertion(<http://purl.obolibrary.org/obo/PATO_0000467> :q21)
ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/RO_0000052> :q21 :e21)
# Individual: :q22 (present#q22)
AnnotationAssertion(rdfs:label :q22 "present#q22"^^xsd:string)
ClassAssertion(<http://purl.obolibrary.org/obo/PATO_0000467> :q22)
ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/RO_0000052> :q22 :e22)
# Individual: :q23 (present#q23)
AnnotationAssertion(rdfs:label :q23 "present#q23"^^xsd:string)
ClassAssertion(<http://purl.obolibrary.org/obo/PATO_0000467> :q23)
ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/RO_0000052> :q23 :e23)
# Individual: :q24 (bifurcated#q24)
AnnotationAssertion(rdfs:label :q24 "bifurcated#q24"^^xsd:string)
ClassAssertion(<http://purl.obolibrary.org/obo/PATO_0001784> :q24)
ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/RO_0000052> :q24 :e24)
# Individual: :q3 (length#q3)
AnnotationAssertion(<http://purl.org/dc/terms/source> :q3 "Nesbitt 2011"^^xsd:string)
AnnotationAssertion(rdfs:comment :q3 "Forelimb-hindlimb length ratio: less than 0.55"^^xsd:string)
AnnotationAssertion(rdfs:label :q3 "length#q3"^^xsd:string)
ClassAssertion(<http://purl.obolibrary.org/obo/PATO_0000122> :q3)
ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/RO_0000052> :q3 :e3)
ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/RO_0002503> :q3 :re3)
# Individual: :q4 (structure#q4)
AnnotationAssertion(<http://purl.org/dc/terms/source> :q4 "O'Leary et al. 2013"^^xsd:string)
AnnotationAssertion(rdfs:comment :q4 "Patagia: Pattern of wing folding: wings folded by flexing all phalanges in digits III, IV, and V anteriorly toward the underside of the wing"^^xsd:string)
AnnotationAssertion(rdfs:label :q4 "structure#q4"^^xsd:string)
ClassAssertion(<http://purl.obolibrary.org/obo/PATO_0000141> :q4)
ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/RO_0000052> :q4 :e4)
# Individual: :q5 (decreased length#q5)
AnnotationAssertion(<http://purl.org/dc/terms/source> :q5 "O'Leary et al. 2013"^^xsd:string)
AnnotationAssertion(rdfs:comment :q5 "Pes, Digit I, length relative to digit II: Digit I shorter than digit II"^^xsd:string)
AnnotationAssertion(rdfs:label :q5 "decreased length#q5"^^xsd:string)
ClassAssertion(<http://purl.obolibrary.org/obo/PATO_0000574> :q5)
ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/RO_0000052> :q5 :e5)
ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/RO_0002503> :q5 :re5)
# Individual: :q6 (present#q6)
AnnotationAssertion(<http://purl.org/dc/terms/source> :q6 "O'Leary et al. 2013"^^xsd:string)
AnnotationAssertion(rdfs:comment :q6 "Prehallux, presence: present"^^xsd:string)
AnnotationAssertion(rdfs:label :q6 "present#q6"^^xsd:string)
ClassAssertion(<http://purl.obolibrary.org/obo/PATO_0000467> :q6)
ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/RO_0000052> :q6 :e6)
# Individual: :q7 (present#q7)
AnnotationAssertion(<http://purl.org/dc/terms/source> :q7 "Gao and Chen 2004"^^xsd:string)
AnnotationAssertion(rdfs:comment :q7 "Prehallux: present as small hindfoot element"^^xsd:string)
AnnotationAssertion(rdfs:label :q7 "present#q7"^^xsd:string)
ClassAssertion(<http://purl.obolibrary.org/obo/PATO_0000467> :q7)
ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/RO_0000052> :q7 :e7)
# Individual: :q8 (present#q8)
AnnotationAssertion(<http://purl.org/dc/terms/source> :q8 "Swartz 2012"^^xsd:string)
AnnotationAssertion(rdfs:comment :q8 "Archipterygial pectoral fin: yes"^^xsd:string)
AnnotationAssertion(rdfs:label :q8 "present#q8"^^xsd:string)
ClassAssertion(<http://purl.obolibrary.org/obo/PATO_0000467> :q8)
ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/RO_0000052> :q8 :e8)
# Individual: :q9 (decreased length#q9)
AnnotationAssertion(<http://purl.org/dc/terms/source> :q9 "Ruta 2011"^^xsd:string)
AnnotationAssertion(rdfs:comment :q9 "Humerus length: or smaller than combined length of two and a half mid-trunk vertebrae"^^xsd:string)
AnnotationAssertion(rdfs:label :q9 "decreased length#q9"^^xsd:string)
ClassAssertion(<http://purl.obolibrary.org/obo/PATO_0000574> :q9)
ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/RO_0000052> :q9 :e9)
ObjectPropertyAssertion(<http://purl.obolibrary.org/obo/RO_0002503> :q9 :re9)
# Individual: :re10 (posterior region of body#re10)
AnnotationAssertion(rdfs:label :re10 "posterior region of body#re10"^^xsd:string)
ClassAssertion(<http://purl.obolibrary.org/obo/UBERON_0000154> :re10)
# Individual: :re12 (phalanx#re12)
AnnotationAssertion(rdfs:label :re12 "phalanx#re12"^^xsd:string)
ClassAssertion(<http://purl.obolibrary.org/obo/UBERON_0003221> :re12)
# Individual: :re2 (cleithrum#re2)
AnnotationAssertion(rdfs:label :re2 "cleithrum#re2"^^xsd:string)
ClassAssertion(<http://purl.obolibrary.org/obo/UBERON_0004741> :re2)
# Individual: :re3 (hindlimb#re3)
AnnotationAssertion(rdfs:label :re3 "hindlimb#re3"^^xsd:string)
ClassAssertion(<http://purl.obolibrary.org/obo/UBERON_0002103> :re3)
# Individual: :re5 (pedal digit 2#re5)
AnnotationAssertion(rdfs:label :re5 "pedal digit 2#re5"^^xsd:string)
ClassAssertion(<http://purl.obolibrary.org/obo/UBERON_0003632> :re5)
# Individual: :re9 (trunk vertebra#re9)
AnnotationAssertion(rdfs:label :re9 "trunk vertebra#re9"^^xsd:string)
ClassAssertion(<http://purl.obolibrary.org/obo/UBERON_0011677> :re9)
# Individual: :t10 (Adrianichthys oophorus#t10)
AnnotationAssertion(rdfs:label :t10 "Adrianichthys oophorus#t10"^^xsd:string)
ClassAssertion(<http://purl.obolibrary.org/obo/VTO_0055067> :t10)
# Individual: :t11 (Triadobatrachus massinoti#t11)
AnnotationAssertion(rdfs:label :t11 "Triadobatrachus massinoti#t11"^^xsd:string)
ClassAssertion(<http://purl.obolibrary.org/obo/VTO_9030624> :t11)
# Individual: :t12 (Hippopotamus amphibius#t12)
AnnotationAssertion(rdfs:label :t12 "Hippopotamus amphibius#t12"^^xsd:string)
ClassAssertion(<http://purl.obolibrary.org/obo/VTO_0011379> :t12)
# Individual: :t13 (Xenophrys aceras#t13)
AnnotationAssertion(rdfs:label :t13 "Xenophrys aceras#t13"^^xsd:string)
ClassAssertion(<http://purl.obolibrary.org/obo/VTO_0002590> :t13)
# Individual: :t14 (mouse#t14)
AnnotationAssertion(rdfs:label :t14 "mouse#t14"^^xsd:string)
ClassAssertion(<http://purl.obolibrary.org/obo/VTO_0014661> :t14)
# Individual: :t15 (zebrafish#t15)
AnnotationAssertion(rdfs:label :t15 "zebrafish#t15"^^xsd:string)
ClassAssertion(<http://purl.obolibrary.org/obo/VTO_0039818> :t15)
# Individual: :t16 (zebrafish#t16)
AnnotationAssertion(rdfs:label :t16 "zebrafish#t16"^^xsd:string)
ClassAssertion(<http://purl.obolibrary.org/obo/VTO_0039818> :t16)
# Individual: :t17 (mouse#t17)
AnnotationAssertion(rdfs:label :t17 "mouse#t17"^^xsd:string)
ClassAssertion(<http://purl.obolibrary.org/obo/VTO_0014661> :t17)
# Individual: :t18 (mouse#t18)
AnnotationAssertion(rdfs:label :t18 "mouse#t18"^^xsd:string)
ClassAssertion(<http://purl.obolibrary.org/obo/VTO_0014661> :t18)
# Individual: :t19 (Dicynodontia#t19)
AnnotationAssertion(rdfs:label :t19 "Dicynodontia#t19"^^xsd:string)
ClassAssertion(<http://purl.obolibrary.org/obo/VTO_9010171> :t19)
# Individual: :t2 (Acestrorhynchus pantaneiro#t2)
AnnotationAssertion(rdfs:label :t2 "Acestrorhynchus pantaneiro#t2"^^xsd:string)
ClassAssertion(<http://purl.obolibrary.org/obo/VTO_0038614> :t2)
# Individual: :t20 (Callorhinus ursinus#t20)
AnnotationAssertion(rdfs:label :t20 "Callorhinus ursinus#t20"^^xsd:string)
ClassAssertion(<http://purl.obolibrary.org/obo/VTO_0010481> :t20)
# Individual: :t21 (mouse#t21)
AnnotationAssertion(rdfs:label :t21 "mouse#t21"^^xsd:string)
ClassAssertion(<http://purl.obolibrary.org/obo/NCBITaxon_10090> :t21)
# Individual: :t22 (mouse#t22)
AnnotationAssertion(rdfs:label :t22 "mouse#t22"^^xsd:string)
ClassAssertion(<http://purl.obolibrary.org/obo/NCBITaxon_10090> :t22)
# Individual: :t23 (mouse#t23)
AnnotationAssertion(rdfs:label :t23 "mouse#t23"^^xsd:string)
ClassAssertion(<http://purl.obolibrary.org/obo/NCBITaxon_10090> :t23)
# Individual: :t24 (Colossoma macropomum#t24)
AnnotationAssertion(rdfs:label :t24 "Colossoma macropomum#t24"^^xsd:string)
ClassAssertion(<http://purl.obolibrary.org/obo/VTO_0037956> :t24)
# Individual: :t3 (Eoraptor lunensis#t3)
AnnotationAssertion(rdfs:label :t3 "Eoraptor lunensis#t3"^^xsd:string)
ClassAssertion(<http://purl.obolibrary.org/obo/VTO_9007897> :t3)
# Individual: :t4 (Pteropus giganteus#t4)
AnnotationAssertion(rdfs:label :t4 "Pteropus giganteus#t4"^^xsd:string)
ClassAssertion(<http://purl.obolibrary.org/obo/VTO_0008902> :t4)
# Individual: :t5 (Dasypus novemcinctus#t5)
AnnotationAssertion(rdfs:label :t5 "Dasypus novemcinctus#t5"^^xsd:string)
ClassAssertion(<http://purl.obolibrary.org/obo/VTO_0008116> :t5)
# Individual: :t6 (Myotis lucifugus#t6)
AnnotationAssertion(rdfs:label :t6 "Myotis lucifugus#t6"^^xsd:string)
ClassAssertion(<http://purl.obolibrary.org/obo/VTO_0009815> :t6)
# Individual: :t7 (Callobatrachus sanyanensis#t7)
AnnotationAssertion(rdfs:label :t7 "Callobatrachus sanyanensis#t7"^^xsd:string)
ClassAssertion(<http://purl.obolibrary.org/obo/VTO_9003126> :t7)
# Individual: :t8 (Glyptolepis#t8)
AnnotationAssertion(rdfs:label :t8 "Glyptolepis#t8"^^xsd:string)
ClassAssertion(<http://purl.obolibrary.org/obo/VTO_9011119> :t8)
# Individual: :t9 (Acanthostega gunnari#t9)
AnnotationAssertion(rdfs:label :t9 "Acanthostega gunnari#t9"^^xsd:string)
ClassAssertion(<http://purl.obolibrary.org/obo/VTO_9001290> :t9)
)