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Convert all remote gene IDs to the same standard we use in PhenpoTips #25

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allasm opened this issue May 26, 2015 · 1 comment
Open

Convert all remote gene IDs to the same standard we use in PhenpoTips #25

allasm opened this issue May 26, 2015 · 1 comment
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@allasm
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allasm commented May 26, 2015

Internally (including when matching) we use "gene symbol" as gene IDs. MME supports { gene symbol | ensembl gene ID | entrez gene ID }, so to do proper matching need to convert "ensembl gene ID" and/or "entrez gene ID" to "gene symbol" first.
@allasm allasm added the bug label May 26, 2015
@allasm allasm self-assigned this May 26, 2015
veronikaslc added a commit to veronikaslc/remote-matching that referenced this issue Jul 28, 2015
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Issue phenotips#25: Convert all remote gene IDs to the same standard …
fdcc2af 
…we use in PhenpoTips. Using getTerms() from GeneNomenclature class
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buske commented Aug 15, 2015

Bump

allasm added a commit that referenced this issue Aug 25, 2015
@allasm
Issue #25: Convert all incoming gene IDs to the same naming scheme we…
2fc4117 
… use in PhenoTips internally.

Fixed.
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