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fluxomics-viz uses invalid galaxy data format JSON #320

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ilveroluca opened this issue Aug 2, 2018 · 3 comments
Open

fluxomics-viz uses invalid galaxy data format JSON #320

ilveroluca opened this issue Aug 2, 2018 · 3 comments
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@cfoguet

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@ilveroluca
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In this tool: tools/phenomenal/fluxomics/fluxomics-viz.xml

It generates this error:

galaxy.model WARNING 2018-08-02 17:36:47,581 [p:166,w:1,m:0] [uWSGIWorker1Core3] Datatype class not found for extension 'JSON'
@cfoguet
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cfoguet commented Aug 3, 2018

Could you provide detailed steps to reproduce the Warning? I tested the tool localy and got no warning.

@ilveroluca
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The warning shows up in the galaxy log when it's starting. That's when it loads the tool xml and sees the problem.

@cfoguet
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cfoguet commented Aug 3, 2018

It is possible that the issue is that format is defined as "JSON" whereas in registry is defined as Json?
Still I am unable to reproduce it in my local Galaxy instance.

I will tag @pcm32 who is the developer of the tool and far more proficient than me in Galaxy

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@ilveroluca @cfoguet