From 0a90dc9743ede628a480ed95392bb6bd6d16090a Mon Sep 17 00:00:00 2001
From: dvantwisk <dvantwisk@gmail.com>
Date: Thu, 7 Nov 2024 18:21:07 -0500
Subject: [PATCH] Dockerfile Updated

---
 src/jaffal_helper.sh | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/src/jaffal_helper.sh b/src/jaffal_helper.sh
index 0257ca1..dbe3a78 100644
--- a/src/jaffal_helper.sh
+++ b/src/jaffal_helper.sh
@@ -23,7 +23,7 @@ for i in $(seq 1 ${REPLICATES}); do
   cp ${DATADIR}/fusions-${1}-${5}-${6}-${i}.fq.gz ${DATADIR}/fusions-${1}-${JAFFAL_QUALITY_NAME}-${6}-${i}.fq.gz
 done
 
-/JAFFA/tools/bin/bpipe run /JAFFA/JAFFAL.groovy \
+/ref/tools/bin/bpipe run /ref/JAFFAL.groovy \
   ${DATADIR}/fusions-${1}-${JAFFAL_QUALITY_NAME}-${6}-${4}.fq.gz
 
 cd $CURRENT