diff --git a/Dockerfile b/Dockerfile index 9a4bc66..cd15409 100644 --- a/Dockerfile +++ b/Dockerfile @@ -40,8 +40,9 @@ RUN wget https://www.niehs.nih.gov/sites/default/files/2024-02/artbinmountrainie FROM rocker/r-ver:4.4.0 +RUN R -q -e 'install.packages("curl")' RUN Rscript -e "install.packages('BiocManager', dependencies=TRUE, repos='http://cran.rstudio.com/')" && \ - Rscript -e "BiocManager::install('GenomicFeatures')" + Rscript -e "BiocManager::install('GenomicFeatures', 'Biostrings', biomaRt', 'rtracklayer', 'stringr', 'ggplot2', 'patchwork', 'cowplot')" # Rscript -e "BiocManager::install(c('GenomicFeatures', 'Biostrings', 'biomaRt', 'rtracklayer', 'stringr', 'ggplot2', 'patchwork', 'cowplot'),dependencies=TRUE')" #FROM mambaorg/micromamba:2.0.2 AS Micromamba