pom.xml

<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
         xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd;">
    <modelVersion>4.0.0</modelVersion>
    
    <parent>
        <groupId>edu.harvard.iq</groupId>
        <artifactId>dataverse-parent</artifactId>
        <version>${revision}</version>
        <relativePath>modules/dataverse-parent</relativePath>
    </parent>
    
    <!--
    If you are doing more than bumping the version number, please read
    doc/sphinx-guides/source/developers/dependencies.rst
    -->
    <artifactId>dataverse</artifactId>
    <packaging>${packaging.type}</packaging>
    <name>dataverse</name>
    <properties>
        <skipUnitTests>false</skipUnitTests>
        <skipIntegrationTests>false</skipIntegrationTests>
        <it.groups>integration</it.groups>
        
        <!-- By default, this module will produce a WAR file. -->
        <!-- This will be switched within the container profile! -->
        <packaging.type>war</packaging.type>
        
        <reload4j.version>1.2.18.4</reload4j.version>
        <flyway.version>9.22.1</flyway.version>
        <jhove.version>1.20.1</jhove.version>
        <poi.version>5.2.1</poi.version>
        <tika.version>2.4.1</tika.version>
        <netcdf.version>5.5.3</netcdf.version>
    </properties>
    
    <!-- Versions of dependencies used both directly and transitive are managed here.
         REMEMBER: only manage things here that are going to be used ONLY for this module.
                   Anything else should go into the parent POM!
    -->
    <dependencyManagement>
        <dependencies>
            <!-- Dependency of sword2-server and used in our codebase -->
            <dependency>
                <groupId>org.apache.abdera</groupId>
                <artifactId>abdera-core</artifactId>
                <version>1.1.3</version>
            </dependency>
            <dependency>
                <groupId>org.apache.abdera</groupId>
                <artifactId>abdera-i18n</artifactId>
                <version>1.1.3</version>
            </dependency>
            <dependency>
                <groupId>org.apache.abdera</groupId>
                <artifactId>abdera-parser</artifactId>
                <version>1.1.3</version>
                <exclusions>
                    <exclusion>
                        <groupId>org.apache.geronimo.specs</groupId>
                        <artifactId>geronimo-javamail_1.4_spec</artifactId>
                    </exclusion>
                </exclusions>
            </dependency>
        </dependencies>
    </dependencyManagement>
    <!-- Declare any DIRECT dependencies here.
         In case the dependency is both transitive and direct (e. g. some common lib for logging),
         manage the version above and add the direct dependency here WITHOUT version tag, too.
    -->
    <!-- TODO: Housekeeping is utterly needed! -->
    <dependencies>

        <!-- This dependency ensures the lib is on the classpath. That way, anything coming from
             SLF4J should flow through our usual ways of using java.util.logging.
             (Which makes it also configurable using those mechanisms.) No direct use intended. -->
        <dependency>
            <groupId>org.slf4j</groupId>
            <artifactId>slf4j-jdk14</artifactId>
            <scope>runtime</scope>
        </dependency>
        
        <dependency>
            <groupId>org.passay</groupId>
            <artifactId>passay</artifactId>
            <version>1.6.0</version>
        </dependency>
        
        <!-- TECHNICAL DEBT
             For a very long time, in a lots of places people used org.apache.commons.httpclient to access
             HTTP resources, wrap responses in exceptions etc.
             
             This library had been used via an transitive dependency of sword2-server. During its recent updates,
             the dependency was dropped, went missing, eventually breaking our code. Re-adding this 2007 goodie here
             as a direct dependency.
             
             There is a lot of technical debt in the codebase regarding HTTP client calls. Sometimes
             java.net.HttpUrlConnection is used, sometimes Apache, sometimes Unirest and what not.
             A big pile of historically grown mess. Some poor dev should take a Kleenex and call for "payback time". -->
        <dependency>
            <groupId>commons-httpclient</groupId>
            <artifactId>commons-httpclient</artifactId>
            <version>3.1</version>
        </dependency>
    
        <!-- BEGIN Data Deposit API v1 (SWORD v2) -->
        <dependency>
            <groupId>io.gdcc</groupId>
            <artifactId>sword2-server</artifactId>
            <version>2.0.0</version>
        </dependency>
        <!-- Dependency to use sword2-server in our codebase -->
        <dependency>
            <groupId>org.apache.abdera</groupId>
            <artifactId>abdera-core</artifactId>
            <!-- no version here as managed in <dependencyManagement> above for convergence! -->
        </dependency>
        <!-- Dependency to use sword2-server in our codebase -->
        <dependency>
            <groupId>org.apache.abdera</groupId>
            <artifactId>abdera-i18n</artifactId>
            <!-- no version here as managed in <dependencyManagement> above for convergence! -->
        </dependency>
        
        <dependency>
            <groupId>com.amazonaws</groupId>
            <artifactId>aws-java-sdk-s3</artifactId>
            <!-- no version here as managed by BOM above! -->
        </dependency>
        <dependency>
          <groupId>com.apicatalog</groupId>
          <artifactId>titanium-json-ld</artifactId>
          <version>1.3.2</version>
        </dependency>
        <dependency>
            <groupId>com.google.code.gson</groupId>
            <artifactId>gson</artifactId>
            <version>2.8.9</version>
            <scope>compile</scope>
        </dependency>
        <!-- Should be refactored and moved to transitive section above once on Java EE 8 (makes WAR smaller) -->
        <dependency>
            <groupId>com.fasterxml.jackson.core</groupId>
            <artifactId>jackson-core</artifactId>
            <scope>provided</scope>
        </dependency>
        <!-- Should be refactored and moved to transitive section above once on Java EE 8 (makes WAR smaller) -->
        <dependency>
            <groupId>com.fasterxml.jackson.core</groupId>
            <artifactId>jackson-databind</artifactId>
            <scope>provided</scope>
        </dependency>
        <dependency>
            <!-- There are later versions of this lib available at jitpack.io,
                 but it seemed better to not add another repo. -->
            <groupId>org.everit.json</groupId>
            <artifactId>org.everit.json.schema</artifactId>
            <version>1.5.1</version>
        </dependency>
        <dependency>
            <groupId>org.mindrot</groupId>
            <artifactId>jbcrypt</artifactId>
            <version>0.4</version>
        </dependency>
        <dependency>
            <groupId>org.postgresql</groupId>
            <artifactId>postgresql</artifactId>
        </dependency>
        <dependency>
            <groupId>org.flywaydb</groupId>
            <artifactId>flyway-core</artifactId>
            <version>${flyway.version}</version>
        </dependency>
        <!-- Enable resolution of the JPA provider in persistence.xml -->
        <dependency>
            <groupId>org.eclipse.persistence</groupId>
            <artifactId>org.eclipse.persistence.jpa</artifactId>
            <scope>provided</scope>
        </dependency>
        <dependency>
            <groupId>com.google.guava</groupId>
            <artifactId>guava</artifactId>
            <version>32.1.2-jre</version>
            <type>jar</type>
        </dependency>
        
        <!-- Jakarta EE & Eclipse MicroProfile base dependencies -->
        <dependency>
            <groupId>org.eclipse.microprofile.config</groupId>
            <artifactId>microprofile-config-api</artifactId>
            <scope>provided</scope>
        </dependency>
        <dependency>
            <groupId>org.eclipse.microprofile.metrics</groupId>
            <artifactId>microprofile-metrics-api</artifactId>
            <scope>provided</scope>
        </dependency>
        <dependency>
            <groupId>jakarta.platform</groupId>
            <artifactId>jakarta.jakartaee-api</artifactId>
            <scope>provided</scope>
        </dependency>
        
        <!-- Jakarta Activation, MIME support etc -->
        <!-- Runtime implementation here only, as necessary for testing. -->
        <dependency>
            <groupId>org.eclipse.angus</groupId>
            <artifactId>angus-activation</artifactId>
            <scope>provided</scope>
            <!-- no version here as managed by Payara BOM above! -->
        </dependency>
        <dependency>
            <groupId>fish.payara.api</groupId>
            <artifactId>payara-api</artifactId>
            <scope>provided</scope>
            <!-- Note: The version was provided by Payara BOM till 6.2023.7, when they removed the Core BOM from it as
                       meant for internal use only. Simply referencing the version property here solves the problem. -->
            <version>${payara.version}</version>
        </dependency>
        
        <!-- JSON-P -->
        <!-- Runtime implementation here only, as necessary for testing. -->
        <dependency>
            <groupId>org.eclipse.parsson</groupId>
            <artifactId>jakarta.json</artifactId>
            <scope>provided</scope>
        </dependency>
        
        <!-- JSON-B -->
        <dependency>
            <groupId>jakarta.json.bind</groupId>
            <artifactId>jakarta.json.bind-api</artifactId>
        </dependency>
        <!-- Rope in an implementation for unit tests - is provided at runtime by appserver -->
        <dependency>
            <groupId>org.eclipse</groupId>
            <artifactId>yasson</artifactId>
            <scope>test</scope>
        </dependency>
        
        <!-- Jakarta Faces & related -->
        <dependency>
            <groupId>org.glassfish</groupId>
            <artifactId>jakarta.faces</artifactId>
            <scope>provided</scope>
        </dependency>
        <dependency>
            <groupId>org.primefaces</groupId>
            <artifactId>primefaces</artifactId>
            <version>11.0.0</version>
            <classifier>jakarta</classifier>
        </dependency>
        <dependency>
            <groupId>org.primefaces.themes</groupId>
            <artifactId>all-themes</artifactId>
            <version>1.0.10</version>
        </dependency>
        <dependency>
            <groupId>org.omnifaces</groupId>
            <artifactId>omnifaces</artifactId>
            <version>4.0-M13</version>
        </dependency>
        
        <!-- Jakarta Validation API & runtime -->
        <dependency>
            <groupId>jakarta.validation</groupId>
            <artifactId>jakarta.validation-api</artifactId>
            <scope>provided</scope>
        </dependency>
        <dependency>
            <groupId>org.hibernate.validator</groupId>
            <artifactId>hibernate-validator</artifactId>
            <scope>provided</scope>
        </dependency>
    
        <!-- Jakarta Expression Language -->
        <!-- Runtime implementation here only, as necessary for testing. -->
        <dependency>
            <groupId>org.glassfish.expressly</groupId>
            <artifactId>expressly</artifactId>
            <scope>provided</scope>
        </dependency>
        
        <dependency>
            <groupId>commons-io</groupId>
            <artifactId>commons-io</artifactId>
            <!-- no version here as managed in <dependencyManagement> of parent for convergence! -->
        </dependency>
        <dependency>
            <groupId>org.apache.commons</groupId>
            <artifactId>commons-lang3</artifactId>
            <!-- no version here as managed in <dependencyManagement> of parent for convergence! -->
        </dependency>
        <!-- Some utils from commons.lang have been moved to commons-text (especially escapeHtml()) -->
        <dependency>
            <groupId>org.apache.commons</groupId>
            <artifactId>commons-text</artifactId>
            <version>1.10.0</version>
        </dependency>
        <dependency>
            <groupId>org.apache.commons</groupId>
            <artifactId>commons-math</artifactId>
            <version>2.2</version>
        </dependency>
        <dependency>
            <groupId>commons-validator</groupId>
            <artifactId>commons-validator</artifactId>
            <version>1.7</version>
        </dependency>
        
        <dependency>
            <groupId>org.apache.solr</groupId>
            <artifactId>solr-solrj</artifactId>
            <version>9.4.1</version>
        </dependency>
        <dependency>
            <groupId>colt</groupId>
            <artifactId>colt</artifactId>
            <version>1.2.0</version>
        </dependency>
        <!-- FITS -->
        <dependency>
            <groupId>gov.nasa.gsfc.heasarc</groupId>
            <artifactId>nom-tam-fits</artifactId>
            <version>1.12.0</version>
        </dependency>
        <dependency>
            <groupId>net.handle</groupId>
            <artifactId>handle-client</artifactId>
            <version>9.3.1</version>
        </dependency>
        <!-- (new) UNF v6: -->
        <dependency>
            <groupId>org.dataverse</groupId>
            <artifactId>unf</artifactId>
            <version>6.0</version>
        </dependency>
        <!-- Rosuda Rengine and Rserve, packaged by org.nuiton.thirdparty -->
        <!-- TODO: see if there's another, better maintained maven repository for Rosuda libraries? - L.A. -->
        <dependency>
            <groupId>org.nuiton.thirdparty</groupId>
            <artifactId>REngine</artifactId>
            <version>0.6-1</version>
        </dependency>
        <dependency>
            <groupId>org.nuiton.thirdparty</groupId>
            <artifactId>Rserve</artifactId>
            <version>0.6-1</version>
        </dependency>
        <!-- Apache POI - used by ingest to parse MS Excel xslx files -->
        <dependency>
            <groupId>org.apache.poi</groupId>
            <artifactId>poi</artifactId>
            <version>${poi.version}</version>
        </dependency>
        <dependency>
            <groupId>org.apache.poi</groupId>
            <artifactId>poi-ooxml</artifactId>
            <version>${poi.version}</version>
        </dependency>
        <dependency>
            <groupId>org.apache.poi</groupId>
            <artifactId>poi-scratchpad</artifactId>
            <version>${poi.version}</version>
        </dependency>
        <dependency>
            <groupId>org.openpreservation.jhove</groupId>
            <artifactId>jhove-core</artifactId>
            <version>${jhove.version}</version>
        </dependency>
        <dependency>
            <groupId>org.openpreservation.jhove</groupId>
            <artifactId>jhove-modules</artifactId>
            <version>${jhove.version}</version>
        </dependency>
        <dependency>
            <groupId>org.openpreservation.jhove</groupId>
            <artifactId>jhove-ext-modules</artifactId>
            <version>${jhove.version}</version>
        </dependency>
        <!-- JAI (Java Advanced Imaging) jars: -->
        <dependency>
            <groupId>com.github.jai-imageio</groupId>
            <artifactId>jai-imageio-core</artifactId>
            <version>1.3.1</version>
        </dependency>
        <dependency>
            <groupId>org.ocpsoft.rewrite</groupId>
            <artifactId>rewrite-servlet</artifactId>
            <version>10.0.0.Final</version>
        </dependency>
        <dependency>
            <groupId>org.ocpsoft.rewrite</groupId>
            <artifactId>rewrite-config-prettyfaces</artifactId>
            <version>10.0.0.Final</version>
        </dependency>
        <dependency>
            <groupId>edu.ucsb.nceas</groupId>
            <artifactId>ezid</artifactId>
            <version>1.0.0</version>
            <type>jar</type>
            <exclusions>
                <exclusion>
                    <groupId>junit</groupId>
                    <artifactId>junit</artifactId>
                </exclusion>
            </exclusions>
        </dependency>
        <dependency>
            <groupId>org.jsoup</groupId>
            <artifactId>jsoup</artifactId>
            <version>1.15.3</version>
        </dependency>
        <dependency>
            <groupId>io.searchbox</groupId>
            <artifactId>jest</artifactId>
            <version>0.1.7</version>
        </dependency>
        <dependency>
            <groupId>commons-codec</groupId>
            <artifactId>commons-codec</artifactId>
            <version>1.15</version>
        </dependency>
        <!-- JavaSwift/JOSS: for accessing OpenStack cloud storage -->
        <dependency>
            <groupId>org.javaswift</groupId>
            <artifactId>joss</artifactId>
            <version>0.10.0</version>
        </dependency>
        <dependency>
            <groupId>org.apache.commons</groupId>
            <artifactId>commons-csv</artifactId>
            <version>1.2</version>
        </dependency>
        <!-- OAuth2 authentication. -->
        <dependency>
            <groupId>com.github.scribejava</groupId>
            <artifactId>scribejava-apis</artifactId>
            <version>6.9.0</version>
        </dependency>
        <!-- OpenID Connect authentication -->
        <dependency>
            <groupId>com.nimbusds</groupId>
            <artifactId>oauth2-oidc-sdk</artifactId>
            <version>10.13.2</version>
        </dependency>
        <!-- Caching library, current main use case is for OIDC authentication -->
        <dependency>
            <groupId>com.github.ben-manes.caffeine</groupId>
            <artifactId>caffeine</artifactId>
            <version>3.1.8</version>
        </dependency>
        
        <!-- New and Improved GDCC XOAI library! -->
        <dependency>
            <groupId>io.gdcc</groupId>
            <artifactId>xoai-data-provider</artifactId>
            <version>${gdcc.xoai.version}</version>
        </dependency>
        <dependency>
            <groupId>io.gdcc</groupId>
            <artifactId>xoai-service-provider</artifactId>
            <version>${gdcc.xoai.version}</version>
        </dependency>
        <!-- Added for AutoService -->
        <dependency>
            <groupId>com.google.auto.service</groupId>
            <artifactId>auto-service</artifactId>
            <version>1.0-rc2</version>
            <optional>true</optional>
            <type>jar</type>
        </dependency>
        <!-- For API File Upload: 1 of 2 -->
        <dependency>
            <groupId>org.glassfish.jersey.core</groupId>
            <artifactId>jersey-server</artifactId>
        </dependency>
        <!-- For API File Upload: 2 of 2 -->
        <dependency>
            <groupId>org.glassfish.jersey.media</groupId>
            <artifactId>jersey-media-multipart</artifactId>
        </dependency>
        <dependency>
            <groupId>com.mashape.unirest</groupId>
            <artifactId>unirest-java</artifactId>
            <version>1.4.9</version>
        </dependency>
        <!-- BagIt export -->
        <dependency>
            <groupId>org.apache.commons</groupId>
            <artifactId>commons-compress</artifactId>
            <!-- no version here as managed by <dependencyManagement> above! -->
        </dependency>
        <dependency>
            <groupId>org.duracloud</groupId>
            <artifactId>common</artifactId>
            <version>8.0.0</version>
            <exclusions>
                <exclusion>
                    <groupId>org.slf4j</groupId>
                    <artifactId>log4j-over-slf4j</artifactId>
                </exclusion>
                <exclusion>
                    <groupId>ch.qos.logback</groupId>
                    <artifactId>logback-classic</artifactId>
                </exclusion>
            </exclusions>
        </dependency>
        <dependency>
            <groupId>org.duracloud</groupId>
            <artifactId>storeclient</artifactId>
            <version>8.0.0</version>
            <exclusions>
                <exclusion>
                    <groupId>org.slf4j</groupId>
                    <artifactId>log4j-over-slf4j</artifactId>
                </exclusion>
                <exclusion>
                    <groupId>com.amazonaws</groupId>
                    <artifactId>aws-java-sdk-sqs</artifactId>
                </exclusion>
                <exclusion>
                    <groupId>ch.qos.logback</groupId>
                    <artifactId>logback-classic</artifactId>
                </exclusion>
            </exclusions>
        </dependency>
        <!--  Full text indexing -->
        <dependency>
            <groupId>org.apache.tika</groupId>
            <artifactId>tika-core</artifactId>
            <version>${tika.version}</version>
        </dependency>
        <dependency>
            <groupId>org.apache.tika</groupId>
            <artifactId>tika-parsers-standard-package</artifactId>
            <version>${tika.version}</version>
        </dependency>
        <!-- Named Entity Recognition -->
        <dependency>
            <groupId>org.apache.opennlp</groupId>
            <artifactId>opennlp-tools</artifactId>
            <version>1.9.1</version>
        </dependency>
        <dependency>
          <groupId>com.google.cloud</groupId>
          <artifactId>google-cloud-storage</artifactId>
          <!-- no version here as managed in <dependencyManagement> of parent for convergence! -->
        </dependency>
        <!-- JWT support, currently in DRSSubmitToArchiveCommand-->
        <!-- https://mvnrepository.com/artifact/com.auth0/java-jwt -->
        <dependency>
          <groupId>com.auth0</groupId>
          <artifactId>java-jwt</artifactId>
          <version>3.19.1</version>
        </dependency>
        <!-- https://mvnrepository.com/artifact/io.github.erdtman/java-json-canonicalization -->
        <dependency>
          <groupId>io.github.erdtman</groupId>
          <artifactId>java-json-canonicalization</artifactId>
          <version>1.1</version>
        </dependency>
        <!-- Sitemap generation -->
        <dependency>
            <groupId>io.gdcc</groupId>
            <artifactId>sitemapgen4j</artifactId>
            <version>2.1.2</version>
        </dependency>
        <dependency>
            <groupId>edu.ucar</groupId>
            <artifactId>cdm-core</artifactId>
            <version>${netcdf.version}</version>
        </dependency>
        <dependency>
            <groupId>io.gdcc</groupId>
            <artifactId>dataverse-spi</artifactId>
            <version>2.0.0</version>
        </dependency>
        <dependency>
            <groupId>javax.cache</groupId>
            <artifactId>cache-api</artifactId>
        </dependency>
        <!-- TESTING DEPENDENCIES -->
        <dependency>
            <groupId>org.junit.jupiter</groupId>
            <artifactId>junit-jupiter</artifactId>
            <version>${junit.jupiter.version}</version>
            <scope>test</scope>
        </dependency>
        <dependency>
            <groupId>org.hamcrest</groupId>
            <artifactId>hamcrest-library</artifactId>
            <version>2.2</version>
            <scope>test</scope>
        </dependency>
        <dependency>
            <groupId>org.assertj</groupId>
            <artifactId>assertj-core</artifactId>
            <version>3.20.2</version>
            <scope>test</scope>
        </dependency>
        <dependency>
            <groupId>org.xmlunit</groupId>
            <artifactId>xmlunit-assertj3</artifactId>
            <version>2.8.2</version>
            <scope>test</scope>
        </dependency>
        <dependency>
            <groupId>io.rest-assured</groupId>
            <artifactId>rest-assured</artifactId>
            <version>5.3.1</version>
            <scope>test</scope>
        </dependency>
        <dependency>
            <groupId>org.skyscreamer</groupId>
            <artifactId>jsonassert</artifactId>
            <version>1.5.0</version>
            <scope>test</scope>
            <exclusions>
                <exclusion>
                    <groupId>com.vaadin.external.google</groupId>
                    <artifactId>android-json</artifactId>
                </exclusion>
            </exclusions>
        </dependency>
        <dependency>
            <groupId>org.testcontainers</groupId>
            <artifactId>testcontainers</artifactId>
            <scope>test</scope>
            <exclusions>
                <exclusion>
                    <groupId>junit</groupId>
                    <artifactId>junit</artifactId>
                </exclusion>
            </exclusions>
        </dependency>
        <dependency>
            <groupId>org.testcontainers</groupId>
            <artifactId>junit-jupiter</artifactId>
            <scope>test</scope>
        </dependency>
        <dependency>
            <groupId>org.testcontainers</groupId>
            <artifactId>postgresql</artifactId>
            <scope>test</scope>
        </dependency>
        <dependency>
            <groupId>com.github.dasniko</groupId>
            <artifactId>testcontainers-keycloak</artifactId>
            <version>3.0.0</version>
            <scope>test</scope>
        </dependency>
        <dependency>
            <groupId>org.testcontainers</groupId>
            <artifactId>localstack</artifactId>
            <scope>test</scope>
        </dependency>
        <!--
            Brute force solution until we are on Jakarta EE 10.
            Otherwise, we get very cryptic errors about missing bundle files on test runs.
            See also https://github.com/jakartaee/jakartaee-api/issues/61
        -->
        <dependency>
            <groupId>jakarta.servlet</groupId>
            <artifactId>jakarta.servlet-api</artifactId>
            <version>4.0.4</version>
            <scope>test</scope>
        </dependency>
        
        <dependency>
            <groupId>org.mockito</groupId>
            <artifactId>mockito-core</artifactId>
            <version>${mockito.version}</version>
            <scope>test</scope>
        </dependency>
        <dependency>
            <groupId>org.mockito</groupId>
            <artifactId>mockito-junit-jupiter</artifactId>
            <version>${mockito.version}</version>
            <scope>test</scope>
        </dependency>
        <dependency>
            <groupId>io.smallrye.config</groupId>
            <artifactId>smallrye-config</artifactId>
            <version>${smallrye-mpconfig.version}</version>
            <scope>test</scope>
        </dependency>
        <dependency>
            <groupId>org.htmlunit</groupId>
            <artifactId>htmlunit</artifactId>
            <version>3.9.0</version>
            <scope>test</scope>
        </dependency>
        <dependency>
            <groupId>com.hazelcast</groupId>
            <artifactId>hazelcast</artifactId>
            <scope>test</scope>
        </dependency>
    </dependencies>
    <build>
        <testResources>
            <testResource>
                <directory>${project.basedir}/src/test/resources</directory>
            </testResource>
            <testResource>
                <directory>${project.basedir}/conf/keycloak</directory>
                <targetPath>keycloak</targetPath>
            </testResource>
        </testResources>
        <resources>
            <resource>
                <directory>src/main/java</directory>
                <includes>
                    <include>*.properties</include>
                    <include>**/*.properties</include>
                    <include>**/mime.types</include>
                    <include>**/*.R</include>
                </includes>
            </resource>
            <resource>
                <directory>src/main/resources</directory>
                <includes>
                    <include>**/*.sql</include>
                    <include>**/*.xml</include>
                    <include>**/firstNames/*.*</include>
                    <include>**/*.xsl</include>
                    <include>**/services/*</include>
                    <include>**/*.map</include>
                </includes>
            </resource>
            <resource>
                <directory>src/main/resources</directory>
                <!-- Filter files matching here for Maven properties and replace -->
                <filtering>true</filtering>
                <includes>
                    <include>**/*.properties</include>
                </includes>
            </resource>
        </resources>
        <plugins>
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-compiler-plugin</artifactId>
                <configuration>
                    <release>${target.java.version}</release>
                    <!-- for use with `mvn -DcompilerArgument=-Xlint:unchecked compile` -->
                    <compilerArgument>${compilerArgument}</compilerArgument>
                </configuration>
            </plugin>
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-jar-plugin</artifactId>
                <configuration>
                    <archive>
                        <manifest>
                            <addDefaultImplementationEntries>true</addDefaultImplementationEntries>
                            <addDefaultSpecificationEntries>true</addDefaultSpecificationEntries>
                        </manifest>
                    </archive>
                </configuration>
            </plugin>
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-war-plugin</artifactId>
                <configuration>
                    <attachClasses>true</attachClasses>
                    <failOnMissingWebXml>false</failOnMissingWebXml>
                    <webappDirectory>${project.build.directory}/${project.artifactId}</webappDirectory>
                    <archive>
                        <manifest>
                            <addDefaultImplementationEntries>true</addDefaultImplementationEntries>
                            <addDefaultSpecificationEntries>true</addDefaultSpecificationEntries>
                        </manifest>
                    </archive>
                </configuration>
            </plugin>
            <plugin>
                <groupId>de.qaware.maven</groupId>
                <artifactId>go-offline-maven-plugin</artifactId>
                <version>1.2.1</version>
                <configuration>
                    <dynamicDependencies>
                    </dynamicDependencies>
                </configuration>
            </plugin>
            <plugin>
                <groupId>org.jacoco</groupId>
                <artifactId>jacoco-maven-plugin</artifactId>
                <executions>
                    <execution>
                        <id>jacoco-initialize</id>
                        <goals>
                            <goal>prepare-agent</goal>
                        </goals>
                        <configuration>
                            <destFile>${project.build.directory}/coverage-reports/jacoco-unit.exec</destFile>
                            <propertyName>surefire.jacoco.args</propertyName>
                            <skip>${skipUnitTests}</skip>
                            <includes>
                                <include>edu/harvard/iq/dataverse/*</include>
                                <include>io/gdcc/*</include>
                                <include>org/dataverse/*</include>
                            </includes>
                        </configuration>
                    </execution>
                    <execution>
                        <id>jacoco-after-unit</id>
                        <phase>test</phase>
                        <goals>
                            <goal>report</goal>
                        </goals>
                        <configuration>
                            <dataFile>${project.build.directory}/coverage-reports/jacoco-unit.exec</dataFile>
                            <outputDirectory>${project.reporting.outputDirectory}/jacoco-unit-test-coverage-report</outputDirectory>
                            <skip>${skipUnitTests}</skip>
                        </configuration>
                    </execution>
                    <execution>
                        <id>jacoco-initialize-it</id>
                        <phase>pre-integration-test</phase>
                        <goals>
                            <goal>prepare-agent</goal>
                        </goals>
                        <configuration>
                            <destFile>${project.build.directory}/coverage-reports/jacoco-integration.exec</destFile>
                            <propertyName>failsafe.jacoco.args</propertyName>
                            <skip>${skipIntegrationTests}</skip>
                            <includes>
                                <include>edu/harvard/iq/dataverse/*</include>
                                <include>io/gdcc/*</include>
                                <include>org/dataverse/*</include>
                            </includes>
                        </configuration>
                    </execution>
                    <execution>
                        <id>jacoco-after-it</id>
                        <phase>post-integration-test</phase>
                        <goals>
                            <goal>report</goal>
                        </goals>
                        <configuration>
                            <dataFile>${project.build.directory}/coverage-reports/jacoco-integration.exec</dataFile>
                            <outputDirectory>${project.reporting.outputDirectory}/jacoco-integration-test-coverage-report</outputDirectory>
                            <skip>${skipIntegrationTests}</skip>
                        </configuration>
                    </execution>
                    <execution>
                        <id>jacoco-merge-unit-and-it</id>
                        <phase>post-integration-test</phase>
                        <goals>
                            <goal>merge</goal>
                        </goals>
                        <configuration>
                            <fileSets>
                                <fileSet>
                                    <directory>${project.build.directory}/coverage-reports/</directory>
                                    <includes>
                                        <include>*.exec</include>
                                    </includes>
                                </fileSet>
                            </fileSets>
                            <destFile>${project.build.directory}/coverage-reports/merged.exec</destFile>
                            <skip>${skipIntegrationTests}</skip>
                        </configuration>
                    </execution>
                    <execution>
                        <id>jacoco-report</id>
                        <phase>post-integration-test</phase>
                        <goals>
                            <goal>report</goal>
                        </goals>
                        <configuration>
                            <dataFile>${project.build.directory}/coverage-reports/merged.exec</dataFile>
                            <outputDirectory>${project.reporting.outputDirectory}/jacoco-merged-test-coverage-report</outputDirectory>
                            <skip>${skipIntegrationTests}</skip>
                        </configuration>
                    </execution>
                </executions>
            </plugin>
            <plugin>
                <groupId>org.eluder.coveralls</groupId>
                <artifactId>coveralls-maven-plugin</artifactId>
                <version>4.3.0</version>
                <dependencies>
                    <dependency>
                        <groupId>javax.xml.bind</groupId>
                        <artifactId>jaxb-api</artifactId>
                        <version>2.3.1</version>
                    </dependency>
                </dependencies>
                <configuration>
                    <jacocoReports>${project.reporting.outputDirectory}/jacoco-merged-test-coverage-report/jacoco.xml</jacocoReports>
                </configuration>
            </plugin>
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-surefire-plugin</artifactId>
                <configuration>
                    <!-- https://stackoverflow.com/questions/46177921/how-to-run-unit-tests-in-excludedgroups-in-maven -->
                    <!-- testsToExclude come from the profile-->
                    <excludedGroups>${testsToExclude}</excludedGroups>
                    <skip>${skipUnitTests}</skip>
                    <argLine>${surefire.jacoco.args} ${argLine}</argLine>
                </configuration>
            </plugin>
            <!-- Run mvn verify to execute these Testcontainers based integration tests. Needs Docker! -->
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-failsafe-plugin</artifactId>
                <configuration>
                    <groups>${it.groups}</groups>
                    <argLine>${failsafe.jacoco.args} ${argLine}</argLine>
                    <skip>${skipIntegrationTests}</skip>
                </configuration>
                <executions>
                    <execution>
                        <goals>
                            <goal>integration-test</goal>
                            <goal>verify</goal>
                        </goals>
                    </execution>
                </executions>
            </plugin>
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-checkstyle-plugin</artifactId>
                <configuration>
                    <configLocation>checkstyle.xml</configLocation>
                    <encoding>UTF-8</encoding>
                    <consoleOutput>true</consoleOutput>
                </configuration>
            </plugin>
        </plugins>
    </build>
    <profiles>
        <profile>
            <id>dev</id>
            <activation>
                <!-- https://stackoverflow.com/questions/11824328/default-build-profile-for-maven -->
                <!-- We set dev to true to developers don't have to run non-essential tests over and over. -->
                <activeByDefault>true</activeByDefault>
            </activation>
            <properties>
                <testsToExclude>not-essential-unittests</testsToExclude>
            </properties>
        </profile>
        <profile>
            <id>all-unit-tests</id>
        </profile>
        <!-- TODO: Add a profile to run API tests (integration tests that end in IT.java. See conf/docker-aio/run-test-suite.sh -->
        <profile>
            <id>ct</id>
            <properties>
                <!-- Let's go FAST here - building the image should be quick to do by default. -->
                <skipUnitTests>true</skipUnitTests>
                <skipIntegrationTests>true</skipIntegrationTests>
                <!-- Once we truly run tests with Testcontainers, this should be switch to "docker", activating ITs -->
                <packaging.type>docker-build</packaging.type>
                <postgresql.server.version>16</postgresql.server.version>
            
                <app.image>gdcc/dataverse:${app.image.tag}</app.image>
                <app.image.tag>unstable</app.image.tag>
                <app.skipDeploy>false</app.skipDeploy>
                <base.image>gdcc/base:${base.image.tag}</base.image>
                <base.image.tag>unstable</base.image.tag>
                <conf.image>gdcc/configbaker:${conf.image.tag}</conf.image>
                <conf.image.tag>${app.image.tag}</conf.image.tag>
    
                <docker.platforms></docker.platforms>
            
                <!-- Variables as used in docker-compose.yml -->
                <APP_IMAGE>${app.image}</APP_IMAGE>
                <POSTGRES_VERSION>${postgresql.server.version}</POSTGRES_VERSION>
                <SOLR_VERSION>${solr.version}</SOLR_VERSION>
                <DATAVERSE_DB_USER>dataverse</DATAVERSE_DB_USER>
                <SKIP_DEPLOY>${app.skipDeploy}</SKIP_DEPLOY>
            </properties>
        
            <build>
                <plugins>
                    <!-- Build the exploded WAR target directory -->
                    <plugin>
                        <groupId>org.apache.maven.plugins</groupId>
                        <artifactId>maven-war-plugin</artifactId>
                        <executions>
                            <execution>
                                <phase>prepare-package</phase>
                                <goals>
                                    <goal>exploded</goal>
                                </goals>
                            </execution>
                        </executions>
                        <configuration>
                        </configuration>
                    </plugin>
                
                    <!-- Build image via Docker Maven Plugin -->
                    <plugin>
                        <groupId>io.fabric8</groupId>
                        <artifactId>docker-maven-plugin</artifactId>
                        <extensions>true</extensions>
                        <configuration>
                            <images>
                                <!-- Dataverse Application image -->
                                <image>
                                    <alias>dev_dataverse</alias>
                                    <name>${app.image}</name>
                                    <build>
                                        <buildx>
                                            <platforms>
                                                <platform>${docker.platforms}</platform>
                                            </platforms>
                                        </buildx>
                                        <dockerFile>Dockerfile</dockerFile>
                                        <args>
                                            <BASE_IMAGE>${base.image}</BASE_IMAGE>
                                        </args>
                                        <filter>@</filter>
                                        <assembly>
                                            <descriptor>assembly.xml</descriptor>
                                        </assembly>
                                    </build>
                                    
                                    <run>
                                    </run>
                                    
                                    <external>
                                        <type>compose</type>
                                        <basedir>${project.basedir}</basedir>
                                        <composeFile>docker-compose-dev.yml</composeFile>
                                    </external>
                                </image>
                                
                                <image>
                                    <alias>dev_bootstrap</alias>
                                    <name>${conf.image}</name>
                                    <build>
                                        <buildx>
                                            <platforms>
                                                <platform>${docker.platforms}</platform>
                                            </platforms>
                                        </buildx>
                                        <dockerFile>${project.basedir}/modules/container-configbaker/Dockerfile</dockerFile>
                                        <args>
                                            <SOLR_VERSION>${SOLR_VERSION}</SOLR_VERSION>
                                        </args>
                                        <filter>@</filter>
                                        <assembly>
                                            <descriptor>${project.basedir}/modules/container-configbaker/assembly.xml</descriptor>
                                        </assembly>
                                    </build>
                                    
                                    <!--
                                        We skip the run here as it is already included in the external run config
                                        above for the main image via the docker-compose file. Even if using
                                        -Ddocker.filter=dev_bootstrap, the run config from above is still enforced.
                                    -->
                                    <run>
                                        <skip>true</skip>
                                    </run>
                                </image>
                            </images>
                            <autoCreateCustomNetworks>true</autoCreateCustomNetworks>
                        </configuration>
                    </plugin>
                    <plugin>
                        <groupId>org.apache.maven.plugins</groupId>
                        <artifactId>maven-failsafe-plugin</artifactId>
                        <version>${maven-failsafe-plugin.version}</version>
                        <configuration>
                            <groups>end2end</groups>
                            <systemPropertyVariables>
                                <postgresql.server.version>${postgresql.server.version}</postgresql.server.version>
                            </systemPropertyVariables>
                            <skip>${skipIntegrationTests}</skip>
                        </configuration>
                        <executions>
                            <execution>
                                <goals>
                                    <goal>integration-test</goal>
                                    <goal>verify</goal>
                                </goals>
                            </execution>
                        </executions>
                    </plugin>
                </plugins>
            </build>
        </profile>
    </profiles>
</project>