ftp: Protein data files (features and aa composition)

[ValWood]

https://www.pombase.org/data/Protein_data/

Need to decide what is required

PeptideStats.tsv	2017-11-23 21:10	190K
Protein_Features.tsv	2017-10-20 21:35	2.8M
aa_composition.tsv	2017-10-20 21:35	333K

make sure these are copied and updated with the other files

[ValWood]

I think we should write out the updated versions of amino acid composition. I think we have been asked for this in the past.
I'm not sure about the protein features. I don't think we need to make this available.

Note that we link to both of these files here:
https://www.pombase.org/downloads/protein-datasets

If we do decide the protein features file is worth keeping, we should
i) remove tmhmms from it because they are in their own file
ii) Rename it as protein domains and families

make sure all currently linked files are up to date

[kimrutherford]

make sure all currently linked files are up to date

They'll be updated nightly from Wednesday night. (I'll check on Thursday)

For now I haven't made any other changes.

[kimrutherford]

If we do decide the protein features file is worth keeping, we should
i) remove tmhmms from it because they are in their own file

The TM domains aren't in that file anymore.

ii) Rename it as protein domains and families

We renamed the gene page section to "Protein domains and features" so how about "protein_domains_and_features.tsv" as the file name?

[ValWood]

so how about "protein_domains_and_features.tsv" as the file name?

definitely!