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[pipeline in progress] Perfusion DSC pipeline #80

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servoz opened this issue May 23, 2024 · 0 comments
Open

[pipeline in progress] Perfusion DSC pipeline #80

servoz opened this issue May 23, 2024 · 0 comments
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servoz commented May 23, 2024 •
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  • The dynamic series of images is processed to create time-intensity curves for each voxel (3D pixel) in the brain.

  • Key perfusion parameters are derived from these curves, including:

    • Cerebral Blood Volume (CBV): The volume of blood in a given amount of brain tissue.
    • Cerebral Blood Flow (CBF): The rate of blood flow through the brain tissue.
    • Mean Transit Time (MTT): The average time it takes for blood to pass through a given region of the brain.
    • Time to Peak (TTP): The time it takes for the contrast agent to reach its maximum concentration in the brain tissue.

  • The pipeline will include a brick for automatically generating a report like the one obtained with Amigo:
    report-High-resolution_manm191119_perf_2024-05-23_18h20min15s.pdf
@servoz servoz self-assigned this May 23, 2024
servoz added a commit that referenced this issue May 27, 2024
@servoz
#80, Perfdsc creation, add Bold_spatial_preprocessing1 and Spatial_mask
1c158da
servoz added a commit that referenced this issue Jun 12, 2024
@servoz
#80, Make_AIF creation
3b8467b
servoz added a commit that referenced this issue Jun 27, 2024
@servoz
Work on Perdsc pipeline #80
82f52ee 
	- Validate the 2 first pipelines (1_spatial_preprocessing and 2_spatial_mask)
	- work on Make_AIF brick
servoz added a commit that referenced this issue Jul 5, 2024
@servoz
work on Make_AIF brick (#80)
3bbe695
servoz added a commit that referenced this issue Jul 8, 2024
@servoz
work on Make_AIF brick (#80)
eca9958
servoz added a commit that referenced this issue Jul 11, 2024
@servoz
work on Make_AIF brick (#80)
2915158
servoz added a commit that referenced this issue Aug 5, 2024
@servoz
add Deconv_from_aif brick (#80)
6400c7b
servoz added a commit that referenced this issue Aug 8, 2024
@servoz
work on Deconv_from_aif brick (#80)
c098e86
servoz added a commit that referenced this issue Aug 12, 2024
@servoz
work on Deconv_from_aif brick (#80)
0a56160
servoz added a commit that referenced this issue Aug 14, 2024
@servoz
work on Deconv_from_aif brick (#80)
e0a457a
servoz added a commit that referenced this issue Aug 27, 2024
@servoz
work on Deconv_from_aif brick (#80)
d39a368
servoz added a commit that referenced this issue Aug 28, 2024
@servoz
work on Deconv_from_aif brick (#80)
9f707d4
servoz added a commit that referenced this issue Aug 29, 2024
@servoz
work on Deconv_from_aif brick (#80)
f32ead7
servoz added a commit that referenced this issue Sep 4, 2024
@servoz
work on Deconv_from_aif brick (#80)
3d6f301
servoz added a commit that referenced this issue Sep 10, 2024
@servoz
work on Deconv_from_aif brick (#80)
8d2d970
servoz added a commit that referenced this issue Sep 11, 2024
@servoz
work on Deconv_from_aif brick (#80)
6a2a18d
servoz added a commit that referenced this issue Sep 12, 2024
@servoz
work on Deconv_from_aif brick (#80)
72981bb
servoz added a commit that referenced this issue Sep 12, 2024
@servoz
work on Make_AIF brick (#80)
99cb483
servoz added a commit that referenced this issue Sep 12, 2024
@servoz
Work on Perdsc pipeline (#80)
0e0b0eb
servoz added a commit that referenced this issue Sep 18, 2024
@servoz
code clean-up in the Deconv_from_aif and Make_AIF classes (#80)
c2042f5
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