diff --git a/2023_Wang_NevaliCori-Baja/2023_Wang_NevaliCori-Baja.bed b/2023_Wang_NevaliCori-Baja/2023_Wang_NevaliCori-Baja.bed new file mode 100644 index 00000000..15145784 --- /dev/null +++ b/2023_Wang_NevaliCori-Baja/2023_Wang_NevaliCori-Baja.bed @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:46f8813a3f5e611e1bbc945d05e990da0e234dfd31e2ac3860fec7b504c710a9 +size 2466029 diff --git a/2023_Wang_NevaliCori-Baja/2023_Wang_NevaliCori-Baja.bib b/2023_Wang_NevaliCori-Baja/2023_Wang_NevaliCori-Baja.bib new file mode 100644 index 00000000..29330d47 --- /dev/null +++ b/2023_Wang_NevaliCori-Baja/2023_Wang_NevaliCori-Baja.bib @@ -0,0 +1,11 @@ +@article{2023_Wang_NevaliCori-Baja, + title = {Isotopic and DNA analyses reveal multiscale PPNB mobility and migration across Southeastern Anatolia and the Southern Levant}, + author = {Wang, Xiaoran; Skourtanioti, Eirini; Benz, Marion; Gresky, Julia; Ilgner, Jana; Lucas, Mary; Morsch, Michael; Peters, Joris; Pöllath, Nadja; Ringbauer, Harald; le Roux, Petrus; Schultz, Michael; Krause, Johannes; Roberts, Patrick; Stockhammer, Philipp W.}, + year = {2023}, + journal = {Proceedings of the National Academy of Sciences}, + volume = {120}, + issue = {4}, + doi = {10.1073/pnas.2210611120}, + url = {https://doi.org/10.1073/pnas.2210611120}, +} + diff --git a/2023_Wang_NevaliCori-Baja/2023_Wang_NevaliCori-Baja.bim b/2023_Wang_NevaliCori-Baja/2023_Wang_NevaliCori-Baja.bim new file mode 100644 index 00000000..384f3bce --- /dev/null +++ b/2023_Wang_NevaliCori-Baja/2023_Wang_NevaliCori-Baja.bim @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:f3d3c4aaa95fc68acd08d9695f14fc8e777d6078d59a2ca64bdaeb770d135d4e +size 43313767 diff --git a/2023_Wang_NevaliCori-Baja/2023_Wang_NevaliCori-Baja.fam b/2023_Wang_NevaliCori-Baja/2023_Wang_NevaliCori-Baja.fam new file mode 100644 index 00000000..66368c7e --- /dev/null +++ b/2023_Wang_NevaliCori-Baja/2023_Wang_NevaliCori-Baja.fam @@ -0,0 +1,7 @@ +Jordan_Baja_PPNB BAJ020 0 0 2 0 +Jordan_Baja_PPNB BAJ022 0 0 1 0 +Turkey_NevaliCori_PPNB NEV009 0 0 2 0 +Turkey_NevaliCori_PPNB_lc NEV014 0 0 2 0 +Turkey_NevaliCori_Roman NEV020 0 0 2 0 +Turkey_NevaliCori_Roman NEV021 0 0 2 0 +Turkey_NevaliCori_IronAge NEV030 0 0 1 0 diff --git a/2023_Wang_NevaliCori-Baja/2023_Wang_NevaliCori-Baja.janno b/2023_Wang_NevaliCori-Baja/2023_Wang_NevaliCori-Baja.janno new file mode 100644 index 00000000..9211f425 --- /dev/null +++ b/2023_Wang_NevaliCori-Baja/2023_Wang_NevaliCori-Baja.janno @@ -0,0 +1,8 @@ +Poseidon_ID Genetic_Sex Group_Name Alternative_IDs Collection_ID Country Location Site Latitude Longitude Date_Type Date_C14_Labnr Date_C14_Uncal_BP Date_C14_Uncal_BP_Err Date_BC_AD_Start Date_BC_AD_Median Date_BC_AD_Stop Date_Note MT_Haplogroup Y_Haplogroup Source_Tissue Nr_Libraries Capture_Type UDG Library_Built Genotype_Ploidy Endogenous Nr_SNPs Damage Contamination Contamination_Err Contamination_Meas Contamination_Note Primary_Contact Publication Note Library_Names +BAJ020 F Jordan_Baja_PPNB "Loc. CR 17:127, No 13" Jordan "Ma'an Governorate, Southern Jordan" Ba`ja 35.4625 30.415278 contextual -7200 -7025 -6850 Late PPNB bone_petrous 1 1240K minus ss haploid 0.628 47393 0.47 0.02 0.02 Schmutzi "Eirini Skourtanioti, eirini_skourtanioti@eva.mpg.de" 2023_Wang_NevaliCori-Baja BAJ020.B0101 +BAJ022 M Jordan_Baja_PPNB "Loc. CR 17:130, skull beneath E-wall" Jordan "Ma'an Governorate, Southern Jordan" Ba`ja 35.4625 30.415278 contextual -7200 -7025 -6850 Late PPNB N1a1a E1b1b1b2a1 bone_petrous 1 1240K minus ss haploid 4.345 333935 0.47 0.02;0.0117 0.01;0.009 Schmutzi;ANGSD 249 SNPs on chrX "Eirini Skourtanioti, eirini_skourtanioti@eva.mpg.de" 2023_Wang_NevaliCori-Baja BAJ022.A0101 +NEV009 F Turkey_NevaliCori_PPNB "NC91, G5, HS21, R4, B2, Burial 81" Turkey Şanlıurfa Nevalı Çori 37.519218 38.606972 contextual -8300 -8100 -7900 PPNB II T2c bone_petrous 1 1240K minus ss haploid 7.355 503444 0.482 0.01 0.01 Schmutzi "Eirini Skourtanioti, eirini_skourtanioti@eva.mpg.de" 2023_Wang_NevaliCori-Baja NEV009.A0201 +NEV014 F Turkey_NevaliCori_PPNB_lc "NC90, F7, Planum 25, Burial 91" Turkey Şanlıurfa Nevalı Çori 37.519218 38.606972 C14 MAMS-50452 9134 34 -8527 -8277 bone_petrous 2 1240K minus ss haploid 0.272 27445 0.48 n/a n/a n/a not enough coverage for Schmutzi "Eirini Skourtanioti, eirini_skourtanioti@eva.mpg.de" 2023_Wang_NevaliCori-Baja Low coverage sample - not included in most analyses NEV014.A0101;NEV014.A0301 +NEV020 F Turkey_NevaliCori_Roman Turkey Şanlıurfa Nevalı Çori 37.519218 38.606972 C14 MAMS-50455 1889 25 81 227 L2a2'3'4 bone_petrous 2 1240K minus ss haploid 10.821 884749 0.41 0.01 0.01 Schmutzi "Eirini Skourtanioti, eirini_skourtanioti@eva.mpg.de" 2023_Wang_NevaliCori-Baja NEV020.A0101;NEV020.A0201 +NEV021 F Turkey_NevaliCori_Roman Turkey Şanlıurfa Nevalı Çori 37.519218 38.606972 C14 OxA-8246 1850 50 66 332 J2b2 bone_petrous 2 1240K minus ss haploid 19.266 748879 0.4 0.01 0.01 Schmutzi "Eirini Skourtanioti, eirini_skourtanioti@eva.mpg.de" 2023_Wang_NevaliCori-Baja NEV021.A0101;NEV021.A0301 +NEV030 M Turkey_NevaliCori_IronAge "NC87, J4N, B1, Burial 13" Turkey Şanlıurfa Nevalı Çori 37.519218 38.606972 C14 MAMS-50457 2477 24 -769 -483 J2a1a2a E1b1b1b2a1 bone_petrous 2 1240K minus ss haploid 5.149 559448 0.41 0.01;0.021 0.01;0.007 Schmutzi;ANGSD 983 SNPs on chrX "Eirini Skourtanioti, eirini_skourtanioti@eva.mpg.de" 2023_Wang_NevaliCori-Baja NEV030.A0101;NEV030.A0301 \ No newline at end of file diff --git a/2023_Wang_NevaliCori-Baja/POSEIDON.yml b/2023_Wang_NevaliCori-Baja/POSEIDON.yml new file mode 100644 index 00000000..c69d73e6 --- /dev/null +++ b/2023_Wang_NevaliCori-Baja/POSEIDON.yml @@ -0,0 +1,22 @@ +poseidonVersion: 2.7.1 +title: 2023_Wang_NevaliCori-Baja +description: Isotopic and DNA analyses reveal multiscale PPNB mobility and migration + across Southeastern Anatolia and the Southern Levant +contributor: +- name: Eirini Skourtanioti + email: eirini_skourtanioti@@eva.mpg.de +packageVersion: 0.1.0 +lastModified: 2024-08-16 +genotypeData: + format: PLINK + genoFile: 2023_Wang_NevaliCori-Baja.bed + genoFileChkSum: a4ac49fcad86925113b4714e94c2f3ac + snpFile: 2023_Wang_NevaliCori-Baja.bim + snpFileChkSum: 433fa85a23f3123bade02348e4628b75 + indFile: 2023_Wang_NevaliCori-Baja.fam + indFileChkSum: 11cb3e8ed44053eeb998ed19925d4293 + snpSet: 1240K +jannoFile: 2023_Wang_NevaliCori-Baja.janno +jannoFileChkSum: d75ef4667cb36ac8bfb1eaba456109d0 +bibFile: 2023_Wang_NevaliCori-Baja.bib +bibFileChkSum: dd06d640e4a2f69c574db2b073abc338