From a632adca90d23a229aa009dd5e9a0a528913cbdb Mon Sep 17 00:00:00 2001 From: AyGhal Date: Wed, 15 Nov 2023 14:14:29 +0100 Subject: [PATCH 1/5] Adding new package for Early Contact paper by Penske et al. 2023. --- .../2023_Penske_EarlyContact.bed | 3 + .../2023_Penske_EarlyContact.bib | 14 ++ .../2023_Penske_EarlyContact.bim | 3 + .../2023_Penske_EarlyContact.fam | 130 +++++++++++++++++ .../2023_Penske_EarlyContact.janno | 131 ++++++++++++++++++ 2023_Penske_EarlyContact/POSEIDON.yml | 23 +++ 6 files changed, 304 insertions(+) create mode 100644 2023_Penske_EarlyContact/2023_Penske_EarlyContact.bed create mode 100644 2023_Penske_EarlyContact/2023_Penske_EarlyContact.bib create mode 100644 2023_Penske_EarlyContact/2023_Penske_EarlyContact.bim create mode 100644 2023_Penske_EarlyContact/2023_Penske_EarlyContact.fam create mode 100644 2023_Penske_EarlyContact/2023_Penske_EarlyContact.janno create mode 100644 2023_Penske_EarlyContact/POSEIDON.yml diff --git a/2023_Penske_EarlyContact/2023_Penske_EarlyContact.bed b/2023_Penske_EarlyContact/2023_Penske_EarlyContact.bed new file mode 100644 index 00000000..e50ee6ef --- /dev/null +++ b/2023_Penske_EarlyContact/2023_Penske_EarlyContact.bed @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:a9d5869d9ee3afb5bd91b3884cb3be37fdd451ab6d402d2fbe42d03c289411ea +size 40689432 diff --git a/2023_Penske_EarlyContact/2023_Penske_EarlyContact.bib b/2023_Penske_EarlyContact/2023_Penske_EarlyContact.bib new file mode 100644 index 00000000..d19c8883 --- /dev/null +++ b/2023_Penske_EarlyContact/2023_Penske_EarlyContact.bib @@ -0,0 +1,14 @@ +@article{2023_Penske_EarlyContact, + title = {Early contact between late farming and pastoralist societies in southeastern Europe}, + author = {Penske, Sandra and Rohrlach, Adam B. and Childebayeva, Ainash and Gnecchi-Ruscone, Guido and Schmid, Clemens and Spyrou, Maria A. and Neumann, Gunnar U. and Atanassova, Nadezhda and Beutler, Katrin and Boyadzhiev, Kamen and Boyadzhiev, Yavor and Bruyako, Igor and Chohadzhiev, Alexander and Govedarica, Blagoje and Karaucak, Mehmet and Krauss, Raiko and Leppek, Maleen and Manzura, Igor and Privat, Karen + and Ross, Shawn and Slavchev, Vladimir and Sobotkova, Ad{\'e}la and Todera{\c{s}}, Meda and Valchev, Todor and Ringbauer, Harald and Stockhammer, Philipp W. and Hansen, Svend and Krause, Johannes and Haak, Wolfgang}, + year = {2023}, + month={Aug}, + journal = {Nature}, + volume = {620}, + number={7973}, + pages={358-365}, + issn={1476-4687}, + doi = {10.1038/s41586-023-06334-8}, + url = {https://doi.org/10.1038/s41586-023-06334-8}, +} diff --git a/2023_Penske_EarlyContact/2023_Penske_EarlyContact.bim b/2023_Penske_EarlyContact/2023_Penske_EarlyContact.bim new file mode 100644 index 00000000..384f3bce --- /dev/null +++ b/2023_Penske_EarlyContact/2023_Penske_EarlyContact.bim @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid 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Coverage_on_Target_SNPs Damage Contamination Contamination_Err Contamination_Meas Genetic_Source_Accession_IDs Primary_Contact Publication Note +BOY001 M BOY_EBA n/a n/a n/a n/a Mound 1(8007), Grave 2 Bulgaria Yambol Oblast Boyanovo 42.28186 26.62944 C14 MAMS-47224  4205 24 -2895 -2787 -2680 n/a R1a1a R1b1a1 Molar, Incisor 4 1240K mixed mixed haploid 0.352 397654 0.0433 0.3845 0.046484 0.020514 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Adéla Sobotkova, Todor Valchev 2023_Penske_EarlyContact n/a +BOY008 M BOY_EBA n/a n/a n/a n/a Mound 1(8007), Grave 9 Bulgaria Yambol Oblast Boyanovo 42.28186 26.62944 C14 MAMS-47227 4213 24 -2899 -2798 -2697 n/a H R1b1a1b Molar 7 1240K mixed mixed haploid 0.174 201203 0.0243 0.4259 -0.006927 0.006455 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Adéla Sobotkova, Todor Valchev 2023_Penske_EarlyContact n/a +BOY009 M BOY_EBA n/a n/a n/a n/a Mound 1(8007), Grave 12 Bulgaria Yambol Oblast Boyanovo 42.28186 26.62944 C14 MAMS-47228  4218 25 -2901 -2799 -2697 n/a H13a1a1 R1b1a1b1b3a Molar 2 1240K mixed mixed haploid 0.307 296112 0.0534 0.4106 0.05008 0.024389 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Adéla Sobotkova, Todor Valchev 2023_Penske_EarlyContact n/a +BOY014 F BOY_EBA n/a n/a n/a n/a Mound 1(8007), Grave 18 Bulgaria Yambol Oblast Boyanovo 42.28186 26.62944 C14 MAMS-47229 4421 25 -3316 -3119 -2923 n/a U5a1b n/a Incisor 2 1240K mixed mixed haploid 0.687 261580 0.0502 0.3545 n/a n/a n/a PRJEB62503 Adéla Sobotkova, Todor Valchev 2023_Penske_EarlyContact n/a +BOY019 M BOY019 n/a n/a n/a n/a Mound 3(6009), Grave 4 Bulgaria Yambol Oblast Boyanovo 42.28186 26.62944 C14 MAMS-47230  4212 24 -2898 -2797 -2697 n/a U5a2b R1b1a1b1b3a Molar 3 1240K mixed mixed haploid 0.063 100453 0.0145 0.3609 -0.011108 0.011633 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Adéla Sobotkova, Todor Valchev 2023_Penske_EarlyContact n/a +VAR002 F VAR_CA n/a n/a n/a n/a VAR_121_I Bulgaria Varna Varna 43.21877 27.91406 C14 OxA-13252 5672 34 -4608 -4503 -4399 n/a X2 n/a Bone (Pars petrosa) 2 1240K half ds haploid 2.936 85341 0.1061 0.1976 n/a n/a n/a PRJEB62503 Raiko Krauss 2023_Penske_EarlyContact n/a +VAR003 F VAR_CA n/a n/a n/a n/a VAR_121_II Bulgaria Varna Varna 43.21877 27.91406 n/a n/a n/a n/a n/a n/a n/a n/a H n/a Bone (Pars petrosa), tooth 23 1 1240K half ds haploid 15.479 367030 0.6247 0.1398 n/a n/a n/a PRJEB62503 Raiko Krauss 2023_Penske_EarlyContact n/a +VAR004 M VAR_CA n/a n/a n/a n/a VAR_255 Bulgaria Varna Varna 43.21877 27.91406 C14 OxA-13254 5732 33 -4686 -4591 -4496 n/a J2b1 G2a2a1 Bone (Pars petrosa) 1 1240K half ds haploid 21.764 502551 0.9613 0.1233 0.003397 0.00263 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Raiko Krauss 2023_Penske_EarlyContact n/a +VAR006 M VAR_CA n/a n/a n/a n/a VAR_92 Bulgaria Varna Varna 43.21877 27.91406 C14 MAMS-51329 5600 23 -4491 -4424 -4358 n/a J1c I2a2 Bone (Pars petrosa) 1 1240K half ds haploid 1.567 347320 0.3732 0.1484 0.016819 0.0135 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Raiko Krauss 2023_Penske_EarlyContact n/a +VAR008 M VAR_CA n/a n/a n/a n/a VAR_173 Bulgaria Varna Varna 43.21877 27.91406 C14 MAMS-51330 5765 27 -4703 -4622 -4541 n/a T2b R1b1b Bone (Pars petrosa), tooth 16 1 1240K half ds haploid 14.542 297798 0.4595 0.1344 -0.001287 0.00098 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Raiko Krauss 2023_Penske_EarlyContact n/a +VAR009 M VAR_CA n/a n/a n/a n/a VAR_182 Bulgaria Varna Varna 43.21877 27.91406 C14 OxA-23622 5659 31 -4581 -4474 -4368 n/a K1a1 E1b1b1a1b1 Bone (Pars petrosa) 1 1240K half ds haploid 3.364 728802 1.2209 0.1031 0.01036 0.00428 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Raiko Krauss 2023_Penske_EarlyContact n/a +VAR010 M VAR_CA n/a n/a n/a n/a VAR_37 Bulgaria Varna Varna 43.21877 27.91406 C14 MAMS-51323 5749 27 -4688 -4595 -4503 n/a U5b1 T1a2 Bone (Pars petrosa), tooth 18 1 1240K half ds haploid 24.524 783665 2.7678 0.1138 0.002108 0.00154 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Raiko Krauss 2023_Penske_EarlyContact n/a +VAR011 M VAR_CA n/a n/a n/a n/a VAR_28 Bulgaria Varna Varna 43.21877 27.91406 C14 OxA-23611 5574 31 -4485 -4416 -4347 n/a H G2a2a1 Bone (Pars petrosa) 1 1240K half ds haploid 4.285 703418 3.4091 0.0967 -0.000634 0.000908 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Raiko Krauss 2023_Penske_EarlyContact n/a +VAR012 F VAR_CA n/a n/a n/a n/a VAR_197 Bulgaria Varna Varna 43.21877 27.91406 C14 OxA-19925 5689 38 -4619 -4534 -4450 n/a T2b28 n/a Bone (Pars petrosa) 1 1240K half ds haploid 9.16 888037 1.8808 n/a n/a n/a n/a PRJEB62503 Raiko Krauss 2023_Penske_EarlyContact n/a +VAR016 M VAR_CA n/a n/a n/a n/a VAR_32 Bulgaria Varna Varna 43.21877 27.91406 C14 OxA-19870 5631 35 -4535 -4451 -4368 n/a T1a T1a Bone (Pars petrosa) 1 1240K half ds haploid 20.368 433478 0.7433 0.1046 -0.001961 0.000796 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3.159 336732 0.3718 0.1294 n/a n/a n/a PRJEB62503 Raiko Krauss 2023_Penske_EarlyContact n/a +YUN001 F YUN_CA n/a n/a n/a n/a Grave 110 Bulgaria Pazardzhik Yunatsite 42.23 24.26 C14 MAMS-45476 5614 31 -4504 -4432 -4360 n/a K2a n/a Bone (Pars petrosa) 2 1240K half ds haploid 10.653 92836 1.2447 0.1035 n/a n/a n/a PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a +YUN003 F YUN_CA n/a YUN049 identical n/a Grave 69 Bulgaria Pazardzhik Yunatsite 42.23 24.26 n/a n/a n/a n/a n/a n/a n/a n/a U2+152 n/a Bone (Pars petrosa), tooth 47 3 1240K half ds haploid 13.802 931532 1.5303 0.1218 n/a n/a n/a PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a +YUN005 F YUN_CA n/a n/a n/a n/a Grave 104 Bulgaria Pazardzhik Yunatsite 42.23 24.26 C14 MAMS-45478 5570 24 -4453 -4404 -4356 n/a U4a2 n/a Bone (Pars petrosa), tooth 47 2 1240K half ds haploid 6.447 421904 0.5265 0.1255 n/a n/a n/a PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a +YUN006 F YUN_CA n/a YUN031 identical n/a Skeleton 127 Bulgaria Pazardzhik Yunatsite 42.23 24.26 C14 MAMS-45479 5589 26 -4462 -4409 -4356 n/a K1a n/a Bone (Pars petrosa) 2 1240K half ds haploid 16.388 654756 1.8984 0.1197 n/a n/a n/a PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a +YUN007 M YUN_CA n/a n/a n/a n/a Grave 87 Bulgaria Pazardzhik Yunatsite 42.23 24.26 C14 MAMS-45480 5551 27 -4451 -4398 -4346 n/a H J2a1a2b2a2~ Bone (Pars pertosa), tooh 46 2 1240K half ds haploid 10.289 714271 1.2191 0.1022 0.002557 0.00282 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a +YUN009 M YUN_CA n/a n/a n/a n/a Grave 102 Bulgaria Pazardzhik Yunatsite 42.23 24.26 C14 MAMS-45482 5548 28 -4450 -4398 -4346 n/a H62 G2a2b2b1a2 Bone (Pars petrosa) 1 1240K half ds haploid 7.323 593481 0.8752 0.0801 0.004825 0.00494 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a +YUN012 F YUN_CA n/a YUN015 first Dauther of YUN015 Grave 23 Bulgaria Pazardzhik Yunatsite 42.23 24.26 n/a n/a n/a n/a n/a n/a n/a n/a X2b n/a Bone (Pars petrosa) 1 1240K half ds haploid 13.153 751668 1.4107 0.0989 n/a n/a n/a PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a +YUN013 M YUN_CA n/a n/a n/a n/a Grave 77/81 Bulgaria Pazardzhik Yunatsite 42.23 24.26 C14 MAMS-45483 5624 26 -4517 -4442 -4367 n/a H7 C1a2b Bone (Pars petrosa) 1 1240K half ds haploid 8.63 533002 0.7021 0.1358 0.009945 0.00771 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a +YUN014 F YUN_CA n/a n/a n/a n/a Grave 67 Bulgaria Pazardzhik Yunatsite 42.23 24.26 C14 MAMS-45484 5577 29 -4459 -4406 -4354 n/a T2b23 n/a Bone (Pars petrosa) 1 1240K half ds haploid 7.722 474178 0.5581 0.1208 n/a n/a n/a PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a +YUN015 M YUN_CA n/a YUN012 first Father of YUN012 Grave 24 Bulgaria Pazardzhik Yunatsite 42.23 24.26 C14 MAMS-45485 5541 28 -4450 -4396 -4342 n/a HV+16311 G2a2b Bone (Pars petrosa), tooth 33 2 1240K half ds haploid 1.318 178276 0.174 0.1301 n/a n/a n/a PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a +YUN019 F YUN_CA n/a n/a n/a n/a Grave 69A/80 Bulgaria Pazardzhik Yunatsite 42.23 24.26 n/a n/a n/a n/a n/a n/a n/a n/a U8b1a2b n/a Bone (Pars petrosa) 1 1240K half ds haploid 8.697 690134 1.1626 0.0964 n/a n/a n/a PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a +YUN021 F YUN_CA n/a n/a n/a n/a Grave 92 Bulgaria Pazardzhik Yunatsite 42.23 24.26 C14 MAMS-45486 5431 25 -4341 -4294 -4247 n/a K1a2 n/a Bone (Pars petrosa) 1 1240K half ds haploid 8.002 589505 0.8237 0.1009 n/a n/a n/a PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a +YUN025 F YUN_CA n/a n/a n/a n/a Grave 56 A Bulgaria Pazardzhik Yunatsite 42.23 24.26 n/a n/a n/a n/a n/a n/a n/a n/a X2b6 n/a Bone (Pars petrosa) 1 1240K half ds haploid 9.063 603588 0.901 0.1304 n/a n/a n/a PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a +YUN026 M YUN_CA n/a n/a n/a n/a Grave 78 Bulgaria Pazardzhik Yunatsite 42.23 24.26 C14 MAMS-45489 5637 26 -4537 -4455 -4373 n/a T2e J2a1a2b2~ Bone (Pars petrosa), tooth 36 2 1240K half ds haploid 5.635 478939 0.578 0.1205 0.008432 0.00817 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a +YUN027 F YUN_CA I0781 n/a n/a n/a Skeleton 78/Grave 83 Bulgaria Pazardzhik Yunatsite 42.23 24.26 n/a n/a n/a n/a n/a n/a n/a n/a K1a+195 n/a Bone (Pars petrosa), tooth 43 2 1240K half ds haploid 7.795 780149 0.7891 0.1105 n/a n/a n/a PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a +YUN028 F YUN_CA n/a n/a n/a n/a Grave 98 Bulgaria Pazardzhik Yunatsite 42.23 24.26 C14 MAMS-45490 5625 26 -4517 -4442 -4368 n/a H n/a Bone (Pars petrosa) 1 1240K half ds haploid 5.893 400904 0.473 0.1617 n/a n/a n/a PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a +YUN048 M YUN_CA n/a n/a n/a n/a Grave square 9 Bulgaria Pazardzhik Yunatsite 42.23 24.26 C14 MAMS-45503 5657 24 -4545 -4497 -4449 n/a K1a1 H2 Bone (Pars petrosa) 1 1240K half ds haploid 17.693 338131 0.3659 0.1152 0.013745 0.0146 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a +YUN033 F YUN_EBA n/a n/a n/a n/a Burial 45 Bulgaria Pazardzhik Yunatsite 42.23 24.26 C14 MAMS-45491 4428 27 -3323 -3124 -2926 n/a T2e2a n/a Bone (Pars petrosa) 1 1240K half ds haploid 4.545 356498 0.3979 0.1386 n/a n/a n/a PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a +YUN034 F YUN_EBA n/a n/a n/a n/a Burial 11 Bulgaria Pazardzhik Yunatsite 42.23 24.26 C14 MAMS-45492 4239 26 -2908 -2833 -2759 n/a N1a1a1a n/a Bone (Pars petrosa) 1 1240K half ds haploid 11.624 163524 0.1587 0.1183 n/a n/a n/a PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a +YUN035 F YUN_EBA n/a YUN036 first siblings Burial 4 Ind 1 Bulgaria Pazardzhik Yunatsite 42.23 24.26 n/a n/a n/a n/a n/a n/a n/a n/a T2b n/a Bone (Pars petrosa) 1 1240K half ds haploid 9.875 335705 0.3608 0.1014 n/a n/a n/a PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a +YUN036 F YUN_EBA n/a YUN035 first siblings Burial 4 Ind 2 Bulgaria Pazardzhik Yunatsite 42.23 24.26 C14 MAMS-45493 4167 25 -2880 -2760 -2640 n/a T2b n/a Bone (Pars petrosa) 1 1240K half ds haploid 6.034 436824 0.5182 0.1015 n/a n/a n/a PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a +YUN037 M YUN_EBA n/a YUN038 first siblings Burial 8 Ind 1 Bulgaria Pazardzhik Yunatsite 42.23 24.26 n/a n/a n/a n/a n/a n/a n/a n/a W1h I2a1a2b1a Bone (Pars petrosa) 1 1240K half ds haploid 5.994 461963 0.5714 0.1135 0.008509 0.00866 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a +YUN038 M YUN_EBA n/a YUN037 first siblings Burial 8 Ind 2 Bulgaria Pazardzhik Yunatsite 42.23 24.26 C14 MAMS-45494 4248 24 -2911 -2838 -2765 n/a W1h I2a1a2b1 Bone (Pars petrosa) 1 1240K half ds haploid 8.215 580796 0.7736 0.0909 0.008647 0.00581 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a +YUN039 F YUN_EBA n/a n/a n/a n/a Burial 3 Bulgaria Pazardzhik Yunatsite 42.23 24.26 C14 MAMS-45495 4213 24 -2898 -2799 -2700 n/a H11a n/a Bone (Pars petrosa) 1 1240K half ds haploid 6.445 398703 0.4618 0.1307 n/a n/a n/a PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a +YUN041 F YUN041 n/a n/a n/a n/a Burial 10 Bulgaria Pazardzhik Yunatsite 42.23 24.26 C14 MAMS-45496 4161 24 -2878 -2758 -2638 n/a K1c1 n/a Bone (Pars petrosa) 1 1240K half ds haploid 12.146 785655 1.5206 0.1119 n/a n/a n/a PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a +YUN042 F YUN_EBA n/a n/a n/a n/a Burial 45C Bulgaria Pazardzhik Yunatsite 42.23 24.26 C14 MAMS-45497 4181 25 -2885 -2780 -2675 n/a H n/a Bone (Pars petrosa) 1 1240K half ds haploid 10.236 729961 1.308 0.1166 n/a n/a n/a PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a +YUN043 F YUN_EBA n/a n/a n/a n/a Burial 6 Bulgaria Pazardzhik Yunatsite 42.23 24.26 C14 MAMS-45498 4162 26 -2879 -2757 -2636 n/a K1a3a n/a Bone (Pars petrosa) 1 1240K half ds haploid 12.561 808840 1.589 0.0814 n/a n/a n/a PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a +YUN044 F YUN_EBA n/a n/a n/a n/a Grave 1 Bulgaria Pazardzhik Yunatsite 42.23 24.26 C14 MAMS-45499 n/a n/a n/a n/a n/a no collagen H1 n/a Bone (Pars petrosa) 1 1240K half ds haploid 9.275 92391 0.0866 0.1198 n/a n/a n/a PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a +YUN045 F YUN_EBA n/a n/a n/a n/a Burial 22 Bulgaria Pazardzhik Yunatsite 42.23 24.26 C14 MAMS-45500 4270 24 -2913 -2896 -2879 n/a T2b n/a Bone (Pars petrosa) 1 1240K half ds haploid 3.62 365020 0.4131 0.1195 n/a n/a n/a PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a +PTK003 M PTK_CA n/a n/a n/a n/a Area E; sq. 77, feature E11/ individual C Bulgaria Polski Tyrambesh Municipality Petko Karavelovo 43.30139 25.64299 C14 MAMS-51580 5721 24 -4674 -4567 -4461 n/a H3aq R1b1b Bone (Pars petrosa), tooth 38 2 1240K minus ss haploid 0.492 58805 0.0757 0.4105 n/a n/a n/a PRJEB62503 Alexander Chohadziev 2023_Penske_EarlyContact n/a +PTK004 M PTK_CA n/a n/a n/a n/a Area E; sq. 77, feature E11/ individual D Bulgaria Polski Tyrambesh Municipality Petko Karavelovo 43.30139 25.64299 C14 MAMS-38611 5708 28 -4656 -4555 -4455 n/a H3aq I2a1b Bone (Pars petrosa), tooth 18 2 1240K minus ss haploid 3.543 180795 0.2891 0.4218 0.003711 0.0471 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Alexander Chohadziev 2023_Penske_EarlyContact n/a +PTK005 M PTK_CA n/a n/a n/a n/a Area E; sq. 77, feature E11/ individual E Bulgaria Polski Tyrambesh Municipality Petko Karavelovo 43.30139 25.64299 n/a n/a n/a n/a n/a n/a n/a n/a U2+152 G2a2b2a1a1c1a1 Bone (Pars petrosa) tooth 18 2 1240K minus ss haploid 9.123 478729 1.0077 0.3905 0.018998 0.0115 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Alexander Chohadziev 2023_Penske_EarlyContact n/a +PIE003 F PIE_CA n/a n/a n/a n/a P104 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47794 5586 25 -4486 -4419 -4353 n/a K1a24 n/a Bone (Pars petrosa), tooth 23 2 1240K half ds haploid 12.118 467662 0.5836 0.1636 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE004 M PIE_CA n/a n/a n/a n/a L-complex 2/2 Tuete 54 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47795 5770 26 -4701 -4622 -4544 n/a H R1b1b Bone (Pars petrosa) 1 1240K half ds haploid 37.704 728137 1.1985 0.197 0.036964 0.0085 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE005 M PIE_CA n/a n/a n/a n/a P13 T210-1 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47796 5699 26 -4608 -4531 -4455 n/a K1a+195 C1a2b Bone (Pars petrosa) 1 1240K half ds haploid 32.84 589468 0.8159 0.1136 0.008914 0.00626 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE006 F PIE_CA n/a n/a n/a n/a P13 B483 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47797 5666 26 -4581 -4492 -4403 n/a T2+16189 n/a Molar 1 1240K half ds haploid 44.127 343022 0.3754 0.1859 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE008 F PIE_CA n/a n/a n/a n/a P14 T615 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47799 5593 26 -4489 -4422 -4355 n/a T2b n/a Bone (Pars petrosa), tooth 26 2 1240K half ds haploid 26.51 654477 1.0184 0.1435 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE010 F PIE_CA n/a PIE009 second n/a P10 M644 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47801 5485 28 -4441 -4348 -4256 n/a K1a n/a Bone (Pars petrosa) 1 1240K half ds haploid 1.065 63989 0.0584 0.1841 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE012 F PIE_CA n/a n/a n/a n/a P11 L273-2 (?) Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47802 5705 26 -4648 -4551 -4455 n/a H7 n/a Bone (Pars petrosa) 1 1240K half ds haploid 8.948 440103 0.5331 0.268 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE013 M PIE_CA n/a n/a n/a n/a P11 B023 (?) Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47803 5623 26 -4536 -4449 -4362 n/a H R1b1b Bone (Pars petrosa) 1 1240K half ds haploid 9.721 400783 0.4588 0.1717 0.010846 0.0115 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE014 F PIE_CA n/a n/a n/a n/a P10 J402b Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47804 5641 27 -4541 -4455 -4369 n/a H7 n/a Bone (Pars petrosa), molar 2 1240K half ds haploid 17.676 421183 0.4902 0.209 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE015 M PIE_CA n/a n/a n/a n/a L-Komplex 1/2 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47805 5704 26 -4612 -4533 -4455 n/a V1a G2a2b2a1a1c2 Bone (Pars petrosa) 1 1240K half ds haploid 32.72 623559 0.9794 0.2336 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE017 M PIE_CA n/a n/a n/a n/a P12 B208 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47806 5761 29 -4708 -4622 -4537 n/a J1 R1b1b Bone (Pars petrosa) 1 1240K half ds haploid 57.52 650841 1.0442 0.1675 0.018341 0.00761 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE018 F PIE_CA n/a n/a n/a n/a P13 T213a Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47807 5602 26 -4494 -4425 -4357 n/a - n/a Bone (Pars petrosa) 1 1240K half ds haploid 1.842 108635 0.1006 0.1418 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE019 M PIE_CA n/a n/a n/a n/a P10 M647 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47808 n/a n/a n/a n/a n/a no collagen T2b R1b1b Bone (Pars petrosa) 1 1240K half ds haploid 11.546 418031 0.5197 0.1317 0.006744 0.00978 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE022 M PIE_CA n/a n/a n/a n/a P11 N707 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47809 5531 25 -4445 -4391 -4338 n/a W3b G2a2a Bone (Pars petrosa), tooth 2 1240K half ds haploid 3.93 97953 0.0911 0.1852 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE023 M PIE_CA n/a n/a n/a n/a P13 T210-2 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47810 5676 29 -4603 -4525 -4447 n/a J2b1 R1b1b Bone (Pars petrosa), tooth 2 1240K half ds haploid 38.607 747469 1.2931 0.1116 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE025 M PIE_CA n/a n/a n/a n/a P09 F102 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47812 5678 24 -4586 -4517 -4448 n/a H5 T1 Bone (Pars petrosa) 1 1240K half ds haploid 16.099 264144 0.2724 0.1683 -0.005324 0.00528 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE026 M PIE_CA n/a n/a n/a n/a P05 B123a Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47813 5651 28 -4546 -4458 -4370 n/a U3a1 R1b1 Bone (Pars petrosa) 1 1240K half ds haploid 3.162 116600 0.1099 0.1978 0.419199 0.29 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE028 M PIE_CA n/a n/a n/a n/a P11 L280 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47814 5600 27 -4494 -4425 -4356 n/a K1a J2a1 Bone (Pars petrosa) 1 1240K half ds haploid 30.031 630850 0.9248 0.2038 0.011423 0.00605 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE029 M PIE_CA n/a n/a n/a n/a P11 F881 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47815 5696 26 -4605 -4530 -4455 n/a K1a+195 G2a2b2b tooth 13 1 1240K half ds haploid 8.339 338277 0.3891 0.2335 0.011625 0.0142 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE030 F PIE_CA n/a n/a n/a n/a P09 J376b Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47816 5419 27 -4341 -4259 -4177 n/a T2c1d1 n/a tooth 84 2 1240K half ds haploid 1.552 63616 0.0383 0.2275 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE032 M PIE_CA n/a n/a n/a n/a P10 J390 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47817 5574 28 -4453 -4402 -4351 n/a T2b G2a tooth 1 1240K half ds haploid 2.196 89763 0.0847 0.2416 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE033 M PIE_CA n/a n/a n/a n/a P08 B114 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47818 5734 28 -4681 -4588 -4496 n/a X2i+@225 G2a2a1a2a Bone (Pars petrosa), tooth 27 2 1240K half ds haploid 47.304 693600 1.1553 0.1245 0.008693 0.00495 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE034 F PIE_CA n/a n/a n/a n/a P08 B 108a)1 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47819 5741 22 -4681 -4591 -4502 n/a H5 n/a Bone (Pars petrosa), tooh 47 3 1240K half ds haploid 61.672 638978 0.9149 0.1321 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE035 F PIE_CA n/a n/a n/a n/a P11 L293b Individuum B Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47820 5700 23 -4607 -4532 -4457 n/a K1 n/a Bone (Pars petrosa), tooth 2 1240K half ds haploid 6.388 300851 0.3276 0.2172 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE037 M PIE_CA n/a n/a n/a n/a P13 L121 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47821 5439 26 -4346 -4297 -4249 n/a N1a1a1a3 H2 Bone (Pars petrosa), tooth 1 1240K half ds haploid 27.351 606612 0.828 0.1349 0.006182 0.00569 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE038 F PIE_CA n/a n/a n/a n/a P12 L057 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47822 5722 26 -4676 -4568 -4461 n/a K1a n/a Bone (Pars petrosa), tooth 36 2 1240K half ds haploid 46.639 776308 1.4672 0.1488 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE039 F PIE039 n/a n/a n/a n/a P11 N743 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47823 6274 28 -5319 -5225 -5132 n/a T2c1d1 n/a Bone (Pars petrosa) 1 1240K half ds haploid 10.811 303265 0.3228 0.1445 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE041 F PIE_CA n/a n/a n/a n/a P10 L234 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47824 5706 22 -4611 -4534 -4457 n/a K1a+195 n/a Bone (Pars petrosa), tooth 26 2 1240K half ds haploid 57.234 712188 1.1898 0.1069 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE042 M PIE_CA n/a n/a n/a n/a P13-T222-2 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47825 5638 22 -4539 -4454 -4370 n/a T2 R1b1b Bone (Pars petrosa), tooth 36 2 1240K half ds haploid 1.116 61089 0.0555 0.1569 0.276243 0.277 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE043 F PIE_CA n/a n/a n/a n/a P10 M640 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47826 5996 28 -4986 -4890 -4795 n/a J1c15 n/a tooth 26 1 1240K half ds haploid 5.197 226726 0.2328 0.1536 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE044 M PIE_CA n/a n/a n/a n/a P10 M645b Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47827 5614 32 -4533 -4445 -4357 n/a - J2a1 Bone (Pars petrosa) 1 1240K half ds haploid 1.431 72702 0.0656 0.1521 0.351775 0.421 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE048 F PIE_CA n/a n/a n/a n/a L-Komplex 1/2 101 Individuum D Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47828 5728 26 -4678 -4585 -4493 n/a H4a1 n/a tooth 46 1 1240K half ds haploid 5.007 237934 0.2575 0.2345 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE050 M PIE_CA n/a n/a n/a n/a P12 L006 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47829 5664 26 -4581 -4490 -4400 n/a H11 C1a2b Bone (Pars petrosa) 1 1240K half ds haploid 58.393 810421 1.5719 0.097 0.00793 0.00363 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE053 F PIE_CA n/a n/a n/a n/a P13 T214-1 (A) Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47830 5599 26 -4492 -4424 -4356 n/a H11b n/a Bone (Pars petrosa), tooth 1 1240K half ds haploid 24.877 619026 0.9071 0.1214 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE054 M PIE_CA n/a PIE058 second n/a P18 W650 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47831 5424 27 -4343 -4292 -4242 n/a I5 G2a2b2a Bone (Pars petrosa), tooth 47 2 1240K half ds haploid 33.216 706997 1.1628 0.1289 0.006114 0.00399 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE057 M PIE_CA n/a n/a n/a n/a P18 W629 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47832 5589 26 -4486 -4420 -4355 n/a HV+16311 C1a2b Bone (Pars petrosa) 1 1240K half ds haploid 66.356 850492 1.7612 0.1061 0.009644 0.0037 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE058 M PIE_CA n/a PIE054 second n/a P18 W642 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47833 5421 26 -4341 -4291 -4242 n/a I5 G2a2b2a1 Bone (Pars petrosa), tooth 2 1240K half ds haploid 29.208 642462 0.9433 0.128 0.006893 0.00555 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE06061 M PIE060 n/a PIE061 identical n/a P18 F708;P18 F738 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47834 5813 25 -4776 -4613 -4551 n/a H+152 I2a1b1a2a tooth 33 1 1240K half ds haploid 40.173 840031 0.958 0.1859 -0.003993 0.00135 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Svend Hansen 2023_Penske_EarlyContact merged with PIE061 +PIE062 M PIE_CA n/a n/a n/a n/a P16 H205 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47836 5441 26 -4346 -4298 -4250 n/a H G2a tooth 16 1 1240K half ds haploid 3.364 156496 0.1565 0.1826 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE063 M PIE_CA n/a n/a n/a n/a P15 T508 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47837 5657 26 -4549 -4460 -4371 n/a I5a C1a2b Bone (Pars petrosa), tooth 37 2 1240K half ds haploid 27.816 575587 0.7974 0.1549 0.0097 0.00678 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE064 F PIE_CA n/a n/a n/a n/a P15 B730 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47838 5672 26 -4589 -4499 -4409 n/a K1a1b n/a tooth 16 1 1240K half ds haploid 39.252 251024 0.259 0.1759 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE065 F PIE_CA n/a n/a n/a n/a P12L006 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47839 5721 27 -4676 -4568 -4460 n/a K1a4 n/a Bone (Pars petrosa) 1 1240K half ds haploid 29.091 569545 0.785 0.0992 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE069 F PIE_CA n/a n/a n/a n/a P16 B068 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47840 5683 23 -4588 -4519 -4451 n/a H n/a Bone (Pars petrosa) 1 1240K half ds haploid 12.215 267964 0.2735 0.1145 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE071631 M PIE_CA n/a PIE016, PIE031 identical n/a P11 N704;P11 N708;P11 N700 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47798 4933 25 -3770 -3708 -3646 n/a K1a2 J2a tooth 16 2 1240K half ds haploid 12.246 563823 0.0493 0.2325 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE074 F PIE_CA n/a n/a n/a n/a P17 H907 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47842 5475 25 -4360 -4308 -4256 n/a T2c1d+152 n/a Bone (Pars petrosa), tooth 2 1240K half ds haploid 47.926 643577 0.9785 0.1476 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE075 F PIE_CA n/a n/a n/a n/a P17 H923 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47843 5508 26 -4444 -4357 -4270 n/a H n/a Bone (Pars petrosa) 1 1240K half ds haploid 10.029 215398 0.2135 0.1945 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE076 M PIE_CA n/a n/a n/a n/a P16 H203 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47844 5437 26 -4345 -4297 -4249 n/a H2 C1a2b Bone (Pars petrosa) 1 1240K half ds haploid 43.167 639198 0.8851 0.1035 -0.002656 0.000837 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE077 F PIE_CA n/a n/a n/a n/a P16 H214 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47845 5411 26 -4339 -4257 -4176 n/a T2b+152 n/a Bone (Pars petrosa) 1 1240K half ds haploid 52.614 714491 1.2985 0.1727 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE078 M PIE078 n/a n/a n/a n/a P16 N513 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47846 4463 25 -3335 -3180 -3026 n/a K1a1a I2a1a2b tooth 2 1240K half ds haploid 9.686 306182 0.3902 0.218 0.010045 0.0145 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +KTL006 M KTL_A n/a n/a n/a n/a Grave 168 Ukraine Odessa Oblast Kartal 45.31667 28.45 C14 MAMS-48815 5205 29 -4156 -4058 -3959 n/a U5a1a I2a1b1a2a2a Bone (Pars petrosa) 1 1240K half ds haploid 40.855 947144 2.2985 0.1274 0.005365 0.00213 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Igor Bruyakov, Igor Manzura 2023_Penske_EarlyContact n/a +MAJ002 F MAJ n/a n/a n/a n/a Flat Nekrop., Grave 1 Ukraine Odessa Oblast Majaky 46.41222 30.27306 C14 MAMS-48818 5498 26 -4441 -4351 -4261 n/a I1b*1 n/a Bone (Pars petrosa), tooth 55 2 1240K half ds haploid 47.263 923516 2.2976 0.1389 n/a n/a n/a PRJEB62503 Igor Bruyakov, Igor Manzura 2023_Penske_EarlyContact n/a +KTL001 M KTL_A n/a n/a n/a n/a Grave 10, white label Ukraine Odessa Oblast Kartal 45.31667 28.45 C14 MAMS-48810 4609 26 -3502 -3423 -3343 n/a H2a1 I2a1b1a2a2a2 Bone (Pars petrosa), tooth 36 3 1240K half mixed haploid 27.386 669917 1.1102 0.3159 0.013279 0.00463 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Igor Bruyakov, Igor Manzura 2023_Penske_EarlyContact n/a +KTL002 F KTL_B n/a n/a n/a n/a Grave 10, blue label Ukraine Odessa Oblast Kartal 45.31667 28.45 C14 MAMS-48811 4806 25 -3641 -3585 -3528 n/a J1c5 n/a Bone (Pars petrosa), tooth 48 3 1240K half mixed haploid 28.092 593998 0.8606 0.334 0.278426 0.014 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Igor Bruyakov, Igor Manzura 2023_Penske_EarlyContact n/a +KTL003 F KTL_A n/a n/a n/a n/a Grave 14 Ukraine Odessa Oblast Kartal 45.31667 28.45 C14 MAMS-48812 4840 26 -3696 -3613 -3530 n/a T2c1c1 n/a molar 2 1240K half mixed haploid 29.272 630628 1.0195 0.3062 0.257031 0.0119 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Igor Bruyakov, Igor Manzura 2023_Penske_EarlyContact n/a +KTL004 F KTL_B n/a n/a n/a n/a Grave 20 Ukraine Odessa Oblast Kartal 45.31667 28.45 C14 MAMS-48813 5064 27 -3952 -3872 -3792 n/a T2b n/a Bone (Pars petrosa), tooth 16 3 1240K half mixed haploid 34.375 846500 1.8239 0.3185 0.275535 0.00905 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Igor Bruyakov, Igor Manzura 2023_Penske_EarlyContact n/a +KTL005 M KTL_B n/a n/a n/a n/a Grave 36 (not grave 35) Ukraine Odessa Oblast Kartal 45.31667 28.45 C14 MAMS-48814 4905 28 -3763 -3701 -3638 n/a U3b3 R1b tooth 33 2 1240K half mixed haploid 31.087 688629 1.0723 0.329 0.009055 0.00418 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Igor Bruyakov, Igor Manzura 2023_Penske_EarlyContact n/a +KTL007 F KTL_A n/a n/a n/a n/a Grave 193 Ukraine Odessa Oblast Kartal 45.31667 28.45 C14 MAMS-48816 5104 27 -3971 -3886 -3801 n/a U4 n/a Bone (Pars petrosa), molar 3 1240K half mixed haploid 18.585 427735 0.5147 0.4079 0.252086 0.018 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Igor Bruyakov, Igor Manzura 2023_Penske_EarlyContact n/a +KTL008 F KTL_A n/a n/a n/a n/a Grave 204 Ukraine Odessa Oblast Kartal 45.31667 28.45 C14 MAMS-48817 4895 26 -3756 -3696 -3636 n/a U2e1b2 n/a Bone (Pars petrosa), molar 3 1240K half mixed haploid 12.381 230550 0.2294 0.3609 0.231345 0.0309 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Igor Bruyakov, Igor Manzura 2023_Penske_EarlyContact n/a +MAJ003 M MAJ n/a n/a n/a n/a Flat Nekrop., Grave 12 Ukraine Odessa Oblast Majaky 46.41222 30.27306 C14 MAMS-48819 4978 28 -3900 -3777 -3653 n/a U5a1a1 G2a2b2a Bone (Pars petrosa) 2 1240K half mixed haploid 34.749 888510 2.1025 0.1921 0.00431 0.00203 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Igor Bruyakov, Igor Manzura 2023_Penske_EarlyContact n/a +MAJ004 F MAJ_EBA n/a n/a n/a n/a Flat Nekrop., Grave 5, skeleton 2 Ukraine Odessa Oblast Majaky 46.41222 30.27306 C14 MAMS-48820 4107 25 -2863 -2686 -2508 n/a U5b2a1a1 n/a Incisor 2 1240K half mixed haploid 16.516 301867 0.3139 0.367 0.296892 0.0292 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Igor Bruyakov, Igor Manzura 2023_Penske_EarlyContact n/a +MAJ008 F MAJ n/a n/a n/a n/a Flat Nekrop., Grave 14, (woman?) Ukraine Odessa Oblast Majaky 46.41222 30.27306 C14 MAMS-48821 5270 28 -4231 -4110 -3989 n/a I1a1 n/a Bone (Pars petrosa), tooth 47 3 1240K half mixed haploid 12.707 219691 0.2126 0.3564 0.281513 0.039 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Igor Bruyakov, Igor Manzura 2023_Penske_EarlyContact n/a +MAJ009 M MAJ n/a MAJ020 second n/a Flat Nekrop., Grave 16 Ukraine Odessa Oblast Majaky 46.41222 30.27306 C14 MAMS-48822 5545 27 -4445 -4395 -4345 n/a H5 R1b1a2a2 Bone (Pars petrosa), tooth 46 3 1240K half mixed haploid 17.622 368493 0.4567 0.3638 0.014609 0.00943 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Igor Bruyakov, Igor Manzura 2023_Penske_EarlyContact n/a +MAJ017 M MAJ_EBA n/a n/a n/a n/a Kurgan 1, Grave 22 Ukraine Odessa Oblast Majaky 46.41222 30.27306 C14 MAMS-48823 4242 27 -2910 -2808 -2705 n/a H2a3 R1b1a1b1b Bone (Pars petrosa), tooth 47 3 1240K half mixed haploid 71.385 867997 3.3307 0.2206 0.008496 0.00248 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Igor Bruyakov, Igor Manzura 2023_Penske_EarlyContact n/a +MAJ019 F MAJ_EBA n/a n/a n/a n/a Kurgan 1, Grave 18 Ukraine Odessa Oblast Majaky 46.41222 30.27306 C14 MAMS-48824 4185 26 -2887 -2778 -2669 n/a H1 n/a tooth 26 2 1240K half mixed haploid 19.562 313281 0.3303 0.3577 0.279141 0.0274 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Igor Bruyakov, Igor Manzura 2023_Penske_EarlyContact n/a +MAJ020 F MAJ n/a MAJ009 second n/a Kurgan 3, Grave 12 Ukraine Odessa Oblast Majaky 46.41222 30.27306 C14 MAMS-48825 5058 21 -3948 -3871 -3794 n/a U5a1f1 n/a Bone (Pars petrosa), tooth 48 2 1240K half mixed haploid 32.517 733609 1.25 0.3133 0.25597 0.0105 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Igor Bruyakov, Igor Manzura 2023_Penske_EarlyContact n/a +MAJ023 F MAJ n/a n/a n/a n/a N13 полка 2 Ukraine Odessa Oblast Majaky 46.41222 30.27306 C14 MAMS-48826 5311 25 -4239 -4145 -4050 n/a I5 n/a Bone (Pars petrosa), tooth 37 3 1240K half mixed haploid 22.177 491411 0.638 0.3386 0.257698 0.0155 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Igor Bruyakov, Igor Manzura 2023_Penske_EarlyContact n/a +UBK003 F USV USV003 n/a n/a n/a Grave 4 Ukraine Odessa Oblast Usatove-Bolšoj Kujalnik 46.52603 30.63042 C14 MAMS-48804 5110 24 -3972 -3888 -3804 n/a U5a1f1 n/a Molar 2 1240K half mixed haploid 22.095 413694 0.4878 0.303 0.307595 0.0215 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Igor Bruyakov, Igor Manzura 2023_Penske_EarlyContact n/a +UBK006 M USV USV006 n/a n/a n/a Grave 1, Skeleton 4 Ukraine Odessa Oblast Usatove-Bolšoj Kujalnik 46.52603 30.63042 C14 MAMS-48806 4853 23 -3701 -3618 -3535 n/a U4a2 I2a1a tooth 46 3 1240K half mixed haploid 26.124 504626 0.6072 0.3232 0.005409 0.00541 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Igor Bruyakov, Igor Manzura 2023_Penske_EarlyContact n/a +USV004 F USV USV004 n/a n/a n/a Kurgan II - 9, Grave 4 Ukraine Odessa Oblast Usatove-Bolšoj Kujalnik 46.52603 30.63042 C14 MAMS-48808 4914 26 -3764 -3703 -3641 n/a n/a n/a Bone (Pars petrosa) 2 1240K half mixed haploid 22.487 428685 0.4841 0.1907 0.243776 0.0193 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Igor Bruyakov, Igor Manzura 2023_Penske_EarlyContact n/a +USV005 F USV USV005 n/a n/a n/a Kurgan II-6, Grave 4 Ukraine Odessa Oblast Usatove-Bolšoj Kujalnik 46.52603 30.63042 C14 MAMS-48809 4819 26 -3646 -3588 -3529 n/a X2b n/a Bone (Pars petrosa), molar 3 1240K half mixed haploid 33.985 910310 1.9788 0.1756 0.293157 0.00835 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Igor Bruyakov, Igor Manzura 2023_Penske_EarlyContact n/a diff --git a/2023_Penske_EarlyContact/POSEIDON.yml b/2023_Penske_EarlyContact/POSEIDON.yml new file mode 100644 index 00000000..36138e3f --- /dev/null +++ b/2023_Penske_EarlyContact/POSEIDON.yml @@ -0,0 +1,23 @@ +poseidonVersion: 2.7.1 +title: 2023_Penske_EarlyContact +description: Early contact between late farming and pastoralist societies in southeastern Europe +contributor: +- name: Ayshin Ghalichi + email: ayshin_ghalichi@eva.mpg.de +- name: Sandra Penske + email: sandra_penske@eva.mpg.de +packageVersion: 1.0.0 +lastModified: 2023-11-14 +genotypeData: + format: PLINK + genoFile: 2023_Penske_EarlyContact.bed + genoFileChkSum: 74f54ba0636e74b5a2e37eaeccba46ea + snpFile: 2023_Penske_EarlyContact.bim + snpFileChkSum: 433fa85a23f3123bade02348e4628b75 + indFile: 2023_Penske_EarlyContact.fam + indFileChkSum: b0459c7047f59a20fc8a19d6001ff5fd + snpSet: 1240K +jannoFile: 2023_Penske_EarlyContact.janno +jannoFileChkSum: 7836f898b009aee8ad9aeacb419edb2b +bibFile: 2023_Penske_EarlyContact.bib +bibFileChkSum: 58a77722660c24a060ab5bae008fb2b5 From bf781dee5ac8b695c499ac4909a8a87f7fe03570 Mon Sep 17 00:00:00 2001 From: AyGhal Date: Wed, 15 Nov 2023 15:12:10 +0100 Subject: [PATCH 2/5] fixed entries in Source_Tissue. --- .../2023_Penske_EarlyContact.janno | 254 +++++++++--------- 2023_Penske_EarlyContact/POSEIDON.yml | 2 +- 2 files changed, 128 insertions(+), 128 deletions(-) diff --git a/2023_Penske_EarlyContact/2023_Penske_EarlyContact.janno b/2023_Penske_EarlyContact/2023_Penske_EarlyContact.janno index 5a3ad43c..c9be9646 100644 --- a/2023_Penske_EarlyContact/2023_Penske_EarlyContact.janno +++ b/2023_Penske_EarlyContact/2023_Penske_EarlyContact.janno @@ -1,131 +1,131 @@ Poseidon_ID Genetic_Sex Group_Name Alternative_IDs Relation_To Relation_Degree Relation_Type Collection_ID Country Location Site Latitude Longitude Date_Type Date_C14_Labnr Date_C14_Uncal_BP Date_C14_Uncal_BP_Err Date_BC_AD_Start Date_BC_AD_Median Date_BC_AD_Stop Date_Note MT_Haplogroup Y_Haplogroup Source_Tissue Nr_Libraries Capture_Type UDG Library_Built Genotype_Ploidy Endogenous Nr_SNPs Coverage_on_Target_SNPs Damage Contamination Contamination_Err Contamination_Meas Genetic_Source_Accession_IDs Primary_Contact Publication Note -BOY001 M BOY_EBA n/a n/a n/a n/a Mound 1(8007), Grave 2 Bulgaria Yambol Oblast Boyanovo 42.28186 26.62944 C14 MAMS-47224  4205 24 -2895 -2787 -2680 n/a R1a1a R1b1a1 Molar, Incisor 4 1240K mixed mixed haploid 0.352 397654 0.0433 0.3845 0.046484 0.020514 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Adéla Sobotkova, Todor Valchev 2023_Penske_EarlyContact n/a -BOY008 M BOY_EBA n/a n/a n/a n/a Mound 1(8007), Grave 9 Bulgaria Yambol Oblast Boyanovo 42.28186 26.62944 C14 MAMS-47227 4213 24 -2899 -2798 -2697 n/a H R1b1a1b Molar 7 1240K mixed mixed haploid 0.174 201203 0.0243 0.4259 -0.006927 0.006455 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Adéla Sobotkova, Todor Valchev 2023_Penske_EarlyContact n/a -BOY009 M BOY_EBA n/a n/a n/a n/a Mound 1(8007), Grave 12 Bulgaria Yambol Oblast Boyanovo 42.28186 26.62944 C14 MAMS-47228  4218 25 -2901 -2799 -2697 n/a H13a1a1 R1b1a1b1b3a Molar 2 1240K mixed mixed haploid 0.307 296112 0.0534 0.4106 0.05008 0.024389 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Adéla Sobotkova, Todor Valchev 2023_Penske_EarlyContact n/a -BOY014 F BOY_EBA n/a n/a n/a n/a Mound 1(8007), Grave 18 Bulgaria Yambol Oblast Boyanovo 42.28186 26.62944 C14 MAMS-47229 4421 25 -3316 -3119 -2923 n/a U5a1b n/a Incisor 2 1240K mixed mixed haploid 0.687 261580 0.0502 0.3545 n/a n/a n/a PRJEB62503 Adéla Sobotkova, Todor Valchev 2023_Penske_EarlyContact n/a -BOY019 M BOY019 n/a n/a n/a n/a Mound 3(6009), Grave 4 Bulgaria Yambol Oblast Boyanovo 42.28186 26.62944 C14 MAMS-47230  4212 24 -2898 -2797 -2697 n/a U5a2b R1b1a1b1b3a Molar 3 1240K mixed mixed haploid 0.063 100453 0.0145 0.3609 -0.011108 0.011633 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Adéla Sobotkova, Todor Valchev 2023_Penske_EarlyContact n/a -VAR002 F VAR_CA n/a n/a n/a n/a VAR_121_I Bulgaria Varna Varna 43.21877 27.91406 C14 OxA-13252 5672 34 -4608 -4503 -4399 n/a X2 n/a Bone (Pars petrosa) 2 1240K half ds haploid 2.936 85341 0.1061 0.1976 n/a n/a n/a PRJEB62503 Raiko Krauss 2023_Penske_EarlyContact n/a -VAR003 F VAR_CA n/a n/a n/a n/a VAR_121_II Bulgaria Varna Varna 43.21877 27.91406 n/a n/a n/a n/a n/a n/a n/a n/a H n/a Bone (Pars petrosa), tooth 23 1 1240K half ds haploid 15.479 367030 0.6247 0.1398 n/a n/a n/a PRJEB62503 Raiko Krauss 2023_Penske_EarlyContact n/a -VAR004 M VAR_CA n/a n/a n/a n/a VAR_255 Bulgaria Varna Varna 43.21877 27.91406 C14 OxA-13254 5732 33 -4686 -4591 -4496 n/a J2b1 G2a2a1 Bone (Pars petrosa) 1 1240K half ds haploid 21.764 502551 0.9613 0.1233 0.003397 0.00263 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Raiko Krauss 2023_Penske_EarlyContact n/a -VAR006 M VAR_CA n/a n/a n/a n/a VAR_92 Bulgaria Varna Varna 43.21877 27.91406 C14 MAMS-51329 5600 23 -4491 -4424 -4358 n/a J1c I2a2 Bone (Pars petrosa) 1 1240K half ds haploid 1.567 347320 0.3732 0.1484 0.016819 0.0135 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Raiko Krauss 2023_Penske_EarlyContact n/a -VAR008 M VAR_CA n/a n/a n/a n/a VAR_173 Bulgaria Varna Varna 43.21877 27.91406 C14 MAMS-51330 5765 27 -4703 -4622 -4541 n/a T2b R1b1b Bone (Pars petrosa), tooth 16 1 1240K half ds haploid 14.542 297798 0.4595 0.1344 -0.001287 0.00098 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Raiko Krauss 2023_Penske_EarlyContact n/a -VAR009 M VAR_CA n/a n/a n/a n/a VAR_182 Bulgaria Varna Varna 43.21877 27.91406 C14 OxA-23622 5659 31 -4581 -4474 -4368 n/a K1a1 E1b1b1a1b1 Bone (Pars petrosa) 1 1240K half ds haploid 3.364 728802 1.2209 0.1031 0.01036 0.00428 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Raiko Krauss 2023_Penske_EarlyContact n/a -VAR010 M VAR_CA n/a n/a n/a n/a VAR_37 Bulgaria Varna Varna 43.21877 27.91406 C14 MAMS-51323 5749 27 -4688 -4595 -4503 n/a U5b1 T1a2 Bone (Pars petrosa), tooth 18 1 1240K half ds haploid 24.524 783665 2.7678 0.1138 0.002108 0.00154 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Raiko Krauss 2023_Penske_EarlyContact n/a -VAR011 M VAR_CA n/a n/a n/a n/a VAR_28 Bulgaria Varna Varna 43.21877 27.91406 C14 OxA-23611 5574 31 -4485 -4416 -4347 n/a H G2a2a1 Bone (Pars petrosa) 1 1240K half ds haploid 4.285 703418 3.4091 0.0967 -0.000634 0.000908 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Raiko Krauss 2023_Penske_EarlyContact n/a -VAR012 F VAR_CA n/a n/a n/a n/a VAR_197 Bulgaria Varna Varna 43.21877 27.91406 C14 OxA-19925 5689 38 -4619 -4534 -4450 n/a T2b28 n/a Bone (Pars petrosa) 1 1240K half ds haploid 9.16 888037 1.8808 n/a n/a n/a n/a PRJEB62503 Raiko Krauss 2023_Penske_EarlyContact n/a -VAR016 M VAR_CA n/a n/a n/a n/a VAR_32 Bulgaria Varna Varna 43.21877 27.91406 C14 OxA-19870 5631 35 -4535 -4451 -4368 n/a T1a T1a Bone (Pars petrosa) 1 1240K half ds haploid 20.368 433478 0.7433 0.1046 -0.001961 0.000796 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Raiko Krauss 2023_Penske_EarlyContact n/a -VAR017 F VAR_CA n/a n/a n/a n/a VAR_22 Bulgaria Varna Varna 43.21877 27.91406 C14 MAMS-51324 5714 24 -4672 -4565 -4458 n/a K1c n/a Bone (Pars petrosa) 1 1240K half ds haploid 8.333 861493 1.8466 n/a n/a n/a n/a PRJEB62503 Raiko Krauss 2023_Penske_EarlyContact n/a -VAR018 M VAR_CA n/a n/a n/a n/a VAR_294 Bulgaria Varna Varna 43.21877 27.91406 C14 OxA-23626 5608 32 -4531 -4442 -4354 n/a T2c1d1 E1b1b1a1b1 Bone (Pars petrosa) 1 1240K half ds haploid 4.611 600784 0.8756 n/a 0.003417 0.00398 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Raiko Krauss 2023_Penske_EarlyContact n/a -VAR019 M VAR_CA n/a n/a n/a n/a VAR_152 Bulgaria Varna Varna 43.21877 27.91406 C14 MAMS-51325 5773 24 -4700 -4623 -4546 n/a H R1b1b Bone (Pars petrosa) 1 1240K half ds haploid 21.688 616329 1.3627 0.1563 0.001634 0.00194 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Raiko Krauss 2023_Penske_EarlyContact n/a -VAR020 M VAR_CA n/a n/a n/a n/a VAR_157 Bulgaria Varna Varna 43.21877 27.91406 C14 MAMS-51331 5687 27 -4603 -4527 -4452 n/a U5b1b1a R1b1b Bone (Pars petrosa) 1 1240K half ds haploid 1.529 399929 0.4503 0.1029 0.010233 0.01 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Raiko Krauss 2023_Penske_EarlyContact n/a -VAR021 F VAR_CA n/a n/a n/a n/a VAR_285 Bulgaria Varna Varna 43.21877 27.91406 C14 MAMS-51332 5661 23 -4547 -4477 -4408 n/a K1a2 n/a Bone (Pars petrosa) 1 1240K half ds haploid 18.121 428854 0.7264 0.1608 n/a n/a n/a PRJEB62503 Raiko Krauss 2023_Penske_EarlyContact n/a -VAR022 M VAR_CA n/a n/a n/a n/a VAR_42_I Bulgaria Varna Varna 43.21877 27.91406 C14 MAMS-51326 5677 24 -4586 -4517 -4448 n/a H1e T1a2b Bone (Pars petrosa) 1 1240K half ds haploid 9.266 870804 2.0484 n/a 0.006244 0.00267 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Raiko Krauss 2023_Penske_EarlyContact n/a -VAR023 M VAR_CA n/a n/a n/a n/a VAR_127 Bulgaria Varna Varna 43.21877 27.91406 C14 OxA-24041 5735 31 -4685 -4592 -4499 n/a H G2a2b2b Bone (Pars petrosa) 1 1240K half ds haploid 14.947 423649 0.6978 0.1271 0.008728 0.005 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Raiko Krauss 2023_Penske_EarlyContact n/a -VAR026 M VAR_CA n/a n/a n/a n/a VAR_139a Bulgaria Varna Varna 43.21877 27.91406 C14 OxA-23620 5668 33 -4604 -4488 -4372 n/a H R1b1b Bone (Pars petrosa) 1 1240K half ds haploid 4.15 104539 0.1316 0.1772 -0.001572 0.00169 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Raiko Krauss 2023_Penske_EarlyContact n/a -VAR027 F VAR_CA n/a n/a n/a n/a VAR_99 Bulgaria Varna Varna 43.21877 27.91406 C14 MAMS-51327 5721 24 -4674 -4567 -4461 n/a K1 n/a Bone (Pars petrosa) 1 1240K half ds haploid 5.342 621094 0.9211 n/a n/a n/a n/a PRJEB62503 Raiko Krauss 2023_Penske_EarlyContact n/a -VAR030 M VAR_CA n/a n/a n/a n/a VAR_194 Bulgaria Varna Varna 43.21877 27.91406 C14 MAMS-51333 5650 24 -4545 -4458 -4371 n/a K2a I2a1b1a2a~ Bone (Pars petrosa) 1 1240K half ds haploid 16.463 484726 1.0197 0.1735 0.003449 0.00284 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Raiko Krauss 2023_Penske_EarlyContact n/a -VAR032 M VAR_CA n/a n/a n/a n/a VAR_155 Bulgaria Varna Varna 43.21877 27.91406 C14 MAMS-51328 5661 23 -4547 -4477 -4408 n/a K1a19 T1a2b Bone (Pars petrosa), tooth 38 1 1240K half ds haploid 5.935 667852 1.0175 n/a 0.005537 0.00409 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Raiko Krauss 2023_Penske_EarlyContact n/a -VAR033 F VAR_CA n/a n/a n/a n/a VAR_158 Bulgaria Varna Varna 43.21877 27.91406 C14 OxA-13688 5787 30 -4711 -4631 -4551 n/a U1a1d n/a Bone (Pars petrosa) 1 1240K half ds haploid 5.046 586592 0.8435 n/a n/a n/a n/a PRJEB62503 Raiko Krauss 2023_Penske_EarlyContact n/a -VAR034 F VAR_CA n/a n/a n/a n/a VAR_75 Bulgaria Varna Varna 43.21877 27.91406 C14 MAMS-51334 5740 23 -4681 -4591 -4502 n/a H87 n/a Bone (Pars petrosa) 1 1240K half ds haploid 3.159 336732 0.3718 0.1294 n/a n/a n/a PRJEB62503 Raiko Krauss 2023_Penske_EarlyContact n/a -YUN001 F YUN_CA n/a n/a n/a n/a Grave 110 Bulgaria Pazardzhik Yunatsite 42.23 24.26 C14 MAMS-45476 5614 31 -4504 -4432 -4360 n/a K2a n/a Bone (Pars petrosa) 2 1240K half ds haploid 10.653 92836 1.2447 0.1035 n/a n/a n/a PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a -YUN003 F YUN_CA n/a YUN049 identical n/a Grave 69 Bulgaria Pazardzhik Yunatsite 42.23 24.26 n/a n/a n/a n/a n/a n/a n/a n/a U2+152 n/a Bone (Pars petrosa), tooth 47 3 1240K half ds haploid 13.802 931532 1.5303 0.1218 n/a n/a n/a PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a -YUN005 F YUN_CA n/a n/a n/a n/a Grave 104 Bulgaria Pazardzhik Yunatsite 42.23 24.26 C14 MAMS-45478 5570 24 -4453 -4404 -4356 n/a U4a2 n/a Bone (Pars petrosa), tooth 47 2 1240K half ds haploid 6.447 421904 0.5265 0.1255 n/a n/a n/a PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a -YUN006 F YUN_CA n/a YUN031 identical n/a Skeleton 127 Bulgaria Pazardzhik Yunatsite 42.23 24.26 C14 MAMS-45479 5589 26 -4462 -4409 -4356 n/a K1a n/a Bone (Pars petrosa) 2 1240K half ds haploid 16.388 654756 1.8984 0.1197 n/a n/a n/a PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a -YUN007 M YUN_CA n/a n/a n/a n/a Grave 87 Bulgaria Pazardzhik Yunatsite 42.23 24.26 C14 MAMS-45480 5551 27 -4451 -4398 -4346 n/a H J2a1a2b2a2~ Bone (Pars pertosa), tooh 46 2 1240K half ds haploid 10.289 714271 1.2191 0.1022 0.002557 0.00282 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a -YUN009 M YUN_CA n/a n/a n/a n/a Grave 102 Bulgaria Pazardzhik Yunatsite 42.23 24.26 C14 MAMS-45482 5548 28 -4450 -4398 -4346 n/a H62 G2a2b2b1a2 Bone (Pars petrosa) 1 1240K half ds haploid 7.323 593481 0.8752 0.0801 0.004825 0.00494 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a -YUN012 F YUN_CA n/a YUN015 first Dauther of YUN015 Grave 23 Bulgaria Pazardzhik Yunatsite 42.23 24.26 n/a n/a n/a n/a n/a n/a n/a n/a X2b n/a Bone (Pars petrosa) 1 1240K half ds haploid 13.153 751668 1.4107 0.0989 n/a n/a n/a PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a -YUN013 M YUN_CA n/a n/a n/a n/a Grave 77/81 Bulgaria Pazardzhik Yunatsite 42.23 24.26 C14 MAMS-45483 5624 26 -4517 -4442 -4367 n/a H7 C1a2b Bone (Pars petrosa) 1 1240K half ds haploid 8.63 533002 0.7021 0.1358 0.009945 0.00771 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a -YUN014 F YUN_CA n/a n/a n/a n/a Grave 67 Bulgaria Pazardzhik Yunatsite 42.23 24.26 C14 MAMS-45484 5577 29 -4459 -4406 -4354 n/a T2b23 n/a Bone (Pars petrosa) 1 1240K half ds haploid 7.722 474178 0.5581 0.1208 n/a n/a n/a PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a -YUN015 M YUN_CA n/a YUN012 first Father of YUN012 Grave 24 Bulgaria Pazardzhik Yunatsite 42.23 24.26 C14 MAMS-45485 5541 28 -4450 -4396 -4342 n/a HV+16311 G2a2b Bone (Pars petrosa), tooth 33 2 1240K half ds haploid 1.318 178276 0.174 0.1301 n/a n/a n/a PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a -YUN019 F YUN_CA n/a n/a n/a n/a Grave 69A/80 Bulgaria Pazardzhik Yunatsite 42.23 24.26 n/a n/a n/a n/a n/a n/a n/a n/a U8b1a2b n/a Bone (Pars petrosa) 1 1240K half ds haploid 8.697 690134 1.1626 0.0964 n/a n/a n/a PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a -YUN021 F YUN_CA n/a n/a n/a n/a Grave 92 Bulgaria Pazardzhik Yunatsite 42.23 24.26 C14 MAMS-45486 5431 25 -4341 -4294 -4247 n/a K1a2 n/a Bone (Pars petrosa) 1 1240K half ds haploid 8.002 589505 0.8237 0.1009 n/a n/a n/a PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a -YUN025 F YUN_CA n/a n/a n/a n/a Grave 56 A Bulgaria Pazardzhik Yunatsite 42.23 24.26 n/a n/a n/a n/a n/a n/a n/a n/a X2b6 n/a Bone (Pars petrosa) 1 1240K half ds haploid 9.063 603588 0.901 0.1304 n/a n/a n/a PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a -YUN026 M YUN_CA n/a n/a n/a n/a Grave 78 Bulgaria Pazardzhik Yunatsite 42.23 24.26 C14 MAMS-45489 5637 26 -4537 -4455 -4373 n/a T2e J2a1a2b2~ Bone (Pars petrosa), tooth 36 2 1240K half ds haploid 5.635 478939 0.578 0.1205 0.008432 0.00817 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a -YUN027 F YUN_CA I0781 n/a n/a n/a Skeleton 78/Grave 83 Bulgaria Pazardzhik Yunatsite 42.23 24.26 n/a n/a n/a n/a n/a n/a n/a n/a K1a+195 n/a Bone (Pars petrosa), tooth 43 2 1240K half ds haploid 7.795 780149 0.7891 0.1105 n/a n/a n/a PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a -YUN028 F YUN_CA n/a n/a n/a n/a Grave 98 Bulgaria Pazardzhik Yunatsite 42.23 24.26 C14 MAMS-45490 5625 26 -4517 -4442 -4368 n/a H n/a Bone (Pars petrosa) 1 1240K half ds haploid 5.893 400904 0.473 0.1617 n/a n/a n/a PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a -YUN048 M YUN_CA n/a n/a n/a n/a Grave square 9 Bulgaria Pazardzhik Yunatsite 42.23 24.26 C14 MAMS-45503 5657 24 -4545 -4497 -4449 n/a K1a1 H2 Bone (Pars petrosa) 1 1240K half ds haploid 17.693 338131 0.3659 0.1152 0.013745 0.0146 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a -YUN033 F YUN_EBA n/a n/a n/a n/a Burial 45 Bulgaria Pazardzhik Yunatsite 42.23 24.26 C14 MAMS-45491 4428 27 -3323 -3124 -2926 n/a T2e2a n/a Bone (Pars petrosa) 1 1240K half ds haploid 4.545 356498 0.3979 0.1386 n/a n/a n/a PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a -YUN034 F YUN_EBA n/a n/a n/a n/a Burial 11 Bulgaria Pazardzhik Yunatsite 42.23 24.26 C14 MAMS-45492 4239 26 -2908 -2833 -2759 n/a N1a1a1a n/a Bone (Pars petrosa) 1 1240K half ds haploid 11.624 163524 0.1587 0.1183 n/a n/a n/a PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a -YUN035 F YUN_EBA n/a YUN036 first siblings Burial 4 Ind 1 Bulgaria Pazardzhik Yunatsite 42.23 24.26 n/a n/a n/a n/a n/a n/a n/a n/a T2b n/a Bone (Pars petrosa) 1 1240K half ds haploid 9.875 335705 0.3608 0.1014 n/a n/a n/a PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a -YUN036 F YUN_EBA n/a YUN035 first siblings Burial 4 Ind 2 Bulgaria Pazardzhik Yunatsite 42.23 24.26 C14 MAMS-45493 4167 25 -2880 -2760 -2640 n/a T2b n/a Bone (Pars petrosa) 1 1240K half ds haploid 6.034 436824 0.5182 0.1015 n/a n/a n/a PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a -YUN037 M YUN_EBA n/a YUN038 first siblings Burial 8 Ind 1 Bulgaria Pazardzhik Yunatsite 42.23 24.26 n/a n/a n/a n/a n/a n/a n/a n/a W1h I2a1a2b1a Bone (Pars petrosa) 1 1240K half ds haploid 5.994 461963 0.5714 0.1135 0.008509 0.00866 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a -YUN038 M YUN_EBA n/a YUN037 first siblings Burial 8 Ind 2 Bulgaria Pazardzhik Yunatsite 42.23 24.26 C14 MAMS-45494 4248 24 -2911 -2838 -2765 n/a W1h I2a1a2b1 Bone (Pars petrosa) 1 1240K half ds haploid 8.215 580796 0.7736 0.0909 0.008647 0.00581 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a -YUN039 F YUN_EBA n/a n/a n/a n/a Burial 3 Bulgaria Pazardzhik Yunatsite 42.23 24.26 C14 MAMS-45495 4213 24 -2898 -2799 -2700 n/a H11a n/a Bone (Pars petrosa) 1 1240K half ds haploid 6.445 398703 0.4618 0.1307 n/a n/a n/a PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a -YUN041 F YUN041 n/a n/a n/a n/a Burial 10 Bulgaria Pazardzhik Yunatsite 42.23 24.26 C14 MAMS-45496 4161 24 -2878 -2758 -2638 n/a K1c1 n/a Bone (Pars petrosa) 1 1240K half ds haploid 12.146 785655 1.5206 0.1119 n/a n/a n/a PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a -YUN042 F YUN_EBA n/a n/a n/a n/a Burial 45C Bulgaria Pazardzhik Yunatsite 42.23 24.26 C14 MAMS-45497 4181 25 -2885 -2780 -2675 n/a H n/a Bone (Pars petrosa) 1 1240K half ds haploid 10.236 729961 1.308 0.1166 n/a n/a n/a PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a -YUN043 F YUN_EBA n/a n/a n/a n/a Burial 6 Bulgaria Pazardzhik Yunatsite 42.23 24.26 C14 MAMS-45498 4162 26 -2879 -2757 -2636 n/a K1a3a n/a Bone (Pars petrosa) 1 1240K half ds haploid 12.561 808840 1.589 0.0814 n/a n/a n/a PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a -YUN044 F YUN_EBA n/a n/a n/a n/a Grave 1 Bulgaria Pazardzhik Yunatsite 42.23 24.26 C14 MAMS-45499 n/a n/a n/a n/a n/a no collagen H1 n/a Bone (Pars petrosa) 1 1240K half ds haploid 9.275 92391 0.0866 0.1198 n/a n/a n/a PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a -YUN045 F YUN_EBA n/a n/a n/a n/a Burial 22 Bulgaria Pazardzhik Yunatsite 42.23 24.26 C14 MAMS-45500 4270 24 -2913 -2896 -2879 n/a T2b n/a Bone (Pars petrosa) 1 1240K half ds haploid 3.62 365020 0.4131 0.1195 n/a n/a n/a PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a -PTK003 M PTK_CA n/a n/a n/a n/a Area E; sq. 77, feature E11/ individual C Bulgaria Polski Tyrambesh Municipality Petko Karavelovo 43.30139 25.64299 C14 MAMS-51580 5721 24 -4674 -4567 -4461 n/a H3aq R1b1b Bone (Pars petrosa), tooth 38 2 1240K minus ss haploid 0.492 58805 0.0757 0.4105 n/a n/a n/a PRJEB62503 Alexander Chohadziev 2023_Penske_EarlyContact n/a -PTK004 M PTK_CA n/a n/a n/a n/a Area E; sq. 77, feature E11/ individual D Bulgaria Polski Tyrambesh Municipality Petko Karavelovo 43.30139 25.64299 C14 MAMS-38611 5708 28 -4656 -4555 -4455 n/a H3aq I2a1b Bone (Pars petrosa), tooth 18 2 1240K minus ss haploid 3.543 180795 0.2891 0.4218 0.003711 0.0471 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Alexander Chohadziev 2023_Penske_EarlyContact n/a -PTK005 M PTK_CA n/a n/a n/a n/a Area E; sq. 77, feature E11/ individual E Bulgaria Polski Tyrambesh Municipality Petko Karavelovo 43.30139 25.64299 n/a n/a n/a n/a n/a n/a n/a n/a U2+152 G2a2b2a1a1c1a1 Bone (Pars petrosa) tooth 18 2 1240K minus ss haploid 9.123 478729 1.0077 0.3905 0.018998 0.0115 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Alexander Chohadziev 2023_Penske_EarlyContact n/a -PIE003 F PIE_CA n/a n/a n/a n/a P104 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47794 5586 25 -4486 -4419 -4353 n/a K1a24 n/a Bone (Pars petrosa), tooth 23 2 1240K half ds haploid 12.118 467662 0.5836 0.1636 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a -PIE004 M PIE_CA n/a n/a n/a n/a L-complex 2/2 Tuete 54 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47795 5770 26 -4701 -4622 -4544 n/a H R1b1b Bone (Pars petrosa) 1 1240K half ds haploid 37.704 728137 1.1985 0.197 0.036964 0.0085 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a -PIE005 M PIE_CA n/a n/a n/a n/a P13 T210-1 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47796 5699 26 -4608 -4531 -4455 n/a K1a+195 C1a2b Bone (Pars petrosa) 1 1240K half ds haploid 32.84 589468 0.8159 0.1136 0.008914 0.00626 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a -PIE006 F PIE_CA n/a n/a n/a n/a P13 B483 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47797 5666 26 -4581 -4492 -4403 n/a T2+16189 n/a Molar 1 1240K half ds haploid 44.127 343022 0.3754 0.1859 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a -PIE008 F PIE_CA n/a n/a n/a n/a P14 T615 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47799 5593 26 -4489 -4422 -4355 n/a T2b n/a Bone (Pars petrosa), tooth 26 2 1240K half ds haploid 26.51 654477 1.0184 0.1435 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a -PIE010 F PIE_CA n/a PIE009 second n/a P10 M644 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47801 5485 28 -4441 -4348 -4256 n/a K1a n/a Bone (Pars petrosa) 1 1240K half ds haploid 1.065 63989 0.0584 0.1841 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a -PIE012 F PIE_CA n/a n/a n/a n/a P11 L273-2 (?) Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47802 5705 26 -4648 -4551 -4455 n/a H7 n/a Bone (Pars petrosa) 1 1240K half ds haploid 8.948 440103 0.5331 0.268 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a -PIE013 M PIE_CA n/a n/a n/a n/a P11 B023 (?) Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47803 5623 26 -4536 -4449 -4362 n/a H R1b1b Bone (Pars petrosa) 1 1240K half ds haploid 9.721 400783 0.4588 0.1717 0.010846 0.0115 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a -PIE014 F PIE_CA n/a n/a n/a n/a P10 J402b Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47804 5641 27 -4541 -4455 -4369 n/a H7 n/a Bone (Pars petrosa), molar 2 1240K half ds haploid 17.676 421183 0.4902 0.209 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a -PIE015 M PIE_CA n/a n/a n/a n/a L-Komplex 1/2 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47805 5704 26 -4612 -4533 -4455 n/a V1a G2a2b2a1a1c2 Bone (Pars petrosa) 1 1240K half ds haploid 32.72 623559 0.9794 0.2336 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a -PIE017 M PIE_CA n/a n/a n/a n/a P12 B208 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47806 5761 29 -4708 -4622 -4537 n/a J1 R1b1b Bone (Pars petrosa) 1 1240K half ds haploid 57.52 650841 1.0442 0.1675 0.018341 0.00761 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a -PIE018 F PIE_CA n/a n/a n/a n/a P13 T213a Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47807 5602 26 -4494 -4425 -4357 n/a - n/a Bone (Pars petrosa) 1 1240K half ds haploid 1.842 108635 0.1006 0.1418 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a -PIE019 M PIE_CA n/a n/a n/a n/a P10 M647 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47808 n/a n/a n/a n/a n/a no collagen T2b R1b1b Bone (Pars petrosa) 1 1240K half ds haploid 11.546 418031 0.5197 0.1317 0.006744 0.00978 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a -PIE022 M PIE_CA n/a n/a n/a n/a P11 N707 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47809 5531 25 -4445 -4391 -4338 n/a W3b G2a2a Bone (Pars petrosa), tooth 2 1240K half ds haploid 3.93 97953 0.0911 0.1852 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a -PIE023 M PIE_CA n/a n/a n/a n/a P13 T210-2 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47810 5676 29 -4603 -4525 -4447 n/a J2b1 R1b1b Bone (Pars petrosa), tooth 2 1240K half ds haploid 38.607 747469 1.2931 0.1116 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a -PIE025 M PIE_CA n/a n/a n/a n/a P09 F102 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47812 5678 24 -4586 -4517 -4448 n/a H5 T1 Bone (Pars petrosa) 1 1240K half ds haploid 16.099 264144 0.2724 0.1683 -0.005324 0.00528 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a -PIE026 M PIE_CA n/a n/a n/a n/a P05 B123a Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47813 5651 28 -4546 -4458 -4370 n/a U3a1 R1b1 Bone (Pars petrosa) 1 1240K half ds haploid 3.162 116600 0.1099 0.1978 0.419199 0.29 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a -PIE028 M PIE_CA n/a n/a n/a n/a P11 L280 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47814 5600 27 -4494 -4425 -4356 n/a K1a J2a1 Bone (Pars petrosa) 1 1240K half ds haploid 30.031 630850 0.9248 0.2038 0.011423 0.00605 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a -PIE029 M PIE_CA n/a n/a n/a n/a P11 F881 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47815 5696 26 -4605 -4530 -4455 n/a K1a+195 G2a2b2b tooth 13 1 1240K half ds haploid 8.339 338277 0.3891 0.2335 0.011625 0.0142 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a -PIE030 F PIE_CA n/a n/a n/a n/a P09 J376b Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47816 5419 27 -4341 -4259 -4177 n/a T2c1d1 n/a tooth 84 2 1240K half ds haploid 1.552 63616 0.0383 0.2275 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +BOY001 M BOY_EBA n/a n/a n/a n/a Mound 1(8007), Grave 2 Bulgaria Yambol Oblast Boyanovo 42.28186 26.62944 C14 MAMS-47224  4205 24 -2895 -2787 -2680 n/a R1a1a R1b1a1 molar;incisor 4 1240K mixed mixed haploid 0.352 397654 0.0433 0.3845 0.046484 0.020514 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Adéla Sobotkova, Todor Valchev 2023_Penske_EarlyContact n/a +BOY008 M BOY_EBA n/a n/a n/a n/a Mound 1(8007), Grave 9 Bulgaria Yambol Oblast Boyanovo 42.28186 26.62944 C14 MAMS-47227 4213 24 -2899 -2798 -2697 n/a H R1b1a1b molar 7 1240K mixed mixed haploid 0.174 201203 0.0243 0.4259 -0.006927 0.006455 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Adéla Sobotkova, Todor Valchev 2023_Penske_EarlyContact n/a +BOY009 M BOY_EBA n/a n/a n/a n/a Mound 1(8007), Grave 12 Bulgaria Yambol Oblast Boyanovo 42.28186 26.62944 C14 MAMS-47228  4218 25 -2901 -2799 -2697 n/a H13a1a1 R1b1a1b1b3a molar 2 1240K mixed mixed haploid 0.307 296112 0.0534 0.4106 0.05008 0.024389 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Adéla Sobotkova, Todor Valchev 2023_Penske_EarlyContact n/a +BOY014 F BOY_EBA n/a n/a n/a n/a Mound 1(8007), Grave 18 Bulgaria Yambol Oblast Boyanovo 42.28186 26.62944 C14 MAMS-47229 4421 25 -3316 -3119 -2923 n/a U5a1b n/a incisor 2 1240K mixed mixed haploid 0.687 261580 0.0502 0.3545 n/a n/a n/a PRJEB62503 Adéla Sobotkova, Todor Valchev 2023_Penske_EarlyContact n/a +BOY019 M BOY019 n/a n/a n/a n/a Mound 3(6009), Grave 4 Bulgaria Yambol Oblast Boyanovo 42.28186 26.62944 C14 MAMS-47230  4212 24 -2898 -2797 -2697 n/a U5a2b R1b1a1b1b3a molar 3 1240K mixed mixed haploid 0.063 100453 0.0145 0.3609 -0.011108 0.011633 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Adéla Sobotkova, Todor Valchev 2023_Penske_EarlyContact n/a +VAR002 F VAR_CA n/a n/a n/a n/a VAR_121_I Bulgaria Varna Varna 43.21877 27.91406 C14 OxA-13252 5672 34 -4608 -4503 -4399 n/a X2 n/a petrous 2 1240K half ds haploid 2.936 85341 0.1061 0.1976 n/a n/a n/a PRJEB62503 Raiko Krauss 2023_Penske_EarlyContact n/a +VAR003 F VAR_CA n/a n/a n/a n/a VAR_121_II Bulgaria Varna Varna 43.21877 27.91406 n/a n/a n/a n/a n/a n/a n/a n/a H n/a petrous;tooth_23 1 1240K half ds haploid 15.479 367030 0.6247 0.1398 n/a n/a n/a PRJEB62503 Raiko Krauss 2023_Penske_EarlyContact n/a +VAR004 M VAR_CA n/a n/a n/a n/a VAR_255 Bulgaria Varna Varna 43.21877 27.91406 C14 OxA-13254 5732 33 -4686 -4591 -4496 n/a J2b1 G2a2a1 petrous 1 1240K half ds haploid 21.764 502551 0.9613 0.1233 0.003397 0.00263 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Raiko Krauss 2023_Penske_EarlyContact n/a +VAR006 M VAR_CA n/a n/a n/a n/a VAR_92 Bulgaria Varna Varna 43.21877 27.91406 C14 MAMS-51329 5600 23 -4491 -4424 -4358 n/a J1c I2a2 petrous 1 1240K half ds haploid 1.567 347320 0.3732 0.1484 0.016819 0.0135 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Raiko Krauss 2023_Penske_EarlyContact n/a +VAR008 M VAR_CA n/a n/a n/a n/a VAR_173 Bulgaria Varna Varna 43.21877 27.91406 C14 MAMS-51330 5765 27 -4703 -4622 -4541 n/a T2b R1b1b petrous;tooth_16 1 1240K half ds haploid 14.542 297798 0.4595 0.1344 -0.001287 0.00098 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Raiko Krauss 2023_Penske_EarlyContact n/a +VAR009 M VAR_CA n/a n/a n/a n/a VAR_182 Bulgaria Varna Varna 43.21877 27.91406 C14 OxA-23622 5659 31 -4581 -4474 -4368 n/a K1a1 E1b1b1a1b1 petrous 1 1240K half ds haploid 3.364 728802 1.2209 0.1031 0.01036 0.00428 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Raiko Krauss 2023_Penske_EarlyContact n/a +VAR010 M VAR_CA n/a n/a n/a n/a VAR_37 Bulgaria Varna Varna 43.21877 27.91406 C14 MAMS-51323 5749 27 -4688 -4595 -4503 n/a U5b1 T1a2 petrous;tooth_18 1 1240K half ds haploid 24.524 783665 2.7678 0.1138 0.002108 0.00154 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Raiko Krauss 2023_Penske_EarlyContact n/a +VAR011 M VAR_CA n/a n/a n/a n/a VAR_28 Bulgaria Varna Varna 43.21877 27.91406 C14 OxA-23611 5574 31 -4485 -4416 -4347 n/a H G2a2a1 petrous 1 1240K half ds haploid 4.285 703418 3.4091 0.0967 -0.000634 0.000908 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Raiko Krauss 2023_Penske_EarlyContact n/a +VAR012 F VAR_CA n/a n/a n/a n/a VAR_197 Bulgaria Varna Varna 43.21877 27.91406 C14 OxA-19925 5689 38 -4619 -4534 -4450 n/a T2b28 n/a petrous 1 1240K half ds haploid 9.16 888037 1.8808 n/a n/a n/a n/a PRJEB62503 Raiko Krauss 2023_Penske_EarlyContact n/a +VAR016 M VAR_CA n/a n/a n/a n/a VAR_32 Bulgaria Varna Varna 43.21877 27.91406 C14 OxA-19870 5631 35 -4535 -4451 -4368 n/a T1a T1a petrous 1 1240K half ds haploid 20.368 433478 0.7433 0.1046 -0.001961 0.000796 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Raiko Krauss 2023_Penske_EarlyContact n/a +VAR017 F VAR_CA n/a n/a n/a n/a VAR_22 Bulgaria Varna Varna 43.21877 27.91406 C14 MAMS-51324 5714 24 -4672 -4565 -4458 n/a K1c n/a petrous 1 1240K half ds haploid 8.333 861493 1.8466 n/a n/a n/a n/a PRJEB62503 Raiko Krauss 2023_Penske_EarlyContact n/a +VAR018 M VAR_CA n/a n/a n/a n/a VAR_294 Bulgaria Varna Varna 43.21877 27.91406 C14 OxA-23626 5608 32 -4531 -4442 -4354 n/a T2c1d1 E1b1b1a1b1 petrous 1 1240K half ds haploid 4.611 600784 0.8756 n/a 0.003417 0.00398 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Raiko Krauss 2023_Penske_EarlyContact n/a +VAR019 M VAR_CA n/a n/a n/a n/a VAR_152 Bulgaria Varna Varna 43.21877 27.91406 C14 MAMS-51325 5773 24 -4700 -4623 -4546 n/a H R1b1b petrous 1 1240K half ds haploid 21.688 616329 1.3627 0.1563 0.001634 0.00194 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Raiko Krauss 2023_Penske_EarlyContact n/a +VAR020 M VAR_CA n/a n/a n/a n/a VAR_157 Bulgaria Varna Varna 43.21877 27.91406 C14 MAMS-51331 5687 27 -4603 -4527 -4452 n/a U5b1b1a R1b1b petrous 1 1240K half ds haploid 1.529 399929 0.4503 0.1029 0.010233 0.01 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Raiko Krauss 2023_Penske_EarlyContact n/a +VAR021 F VAR_CA n/a n/a n/a n/a VAR_285 Bulgaria Varna Varna 43.21877 27.91406 C14 MAMS-51332 5661 23 -4547 -4477 -4408 n/a K1a2 n/a petrous 1 1240K half ds haploid 18.121 428854 0.7264 0.1608 n/a n/a n/a PRJEB62503 Raiko Krauss 2023_Penske_EarlyContact n/a +VAR022 M VAR_CA n/a n/a n/a n/a VAR_42_I Bulgaria Varna Varna 43.21877 27.91406 C14 MAMS-51326 5677 24 -4586 -4517 -4448 n/a H1e T1a2b petrous 1 1240K half ds haploid 9.266 870804 2.0484 n/a 0.006244 0.00267 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Raiko Krauss 2023_Penske_EarlyContact n/a +VAR023 M VAR_CA n/a n/a n/a n/a VAR_127 Bulgaria Varna Varna 43.21877 27.91406 C14 OxA-24041 5735 31 -4685 -4592 -4499 n/a H G2a2b2b petrous 1 1240K half ds haploid 14.947 423649 0.6978 0.1271 0.008728 0.005 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Raiko Krauss 2023_Penske_EarlyContact n/a +VAR026 M VAR_CA n/a n/a n/a n/a VAR_139a Bulgaria Varna Varna 43.21877 27.91406 C14 OxA-23620 5668 33 -4604 -4488 -4372 n/a H R1b1b petrous 1 1240K half ds haploid 4.15 104539 0.1316 0.1772 -0.001572 0.00169 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Raiko Krauss 2023_Penske_EarlyContact n/a +VAR027 F VAR_CA n/a n/a n/a n/a VAR_99 Bulgaria Varna Varna 43.21877 27.91406 C14 MAMS-51327 5721 24 -4674 -4567 -4461 n/a K1 n/a petrous 1 1240K half ds haploid 5.342 621094 0.9211 n/a n/a n/a n/a PRJEB62503 Raiko Krauss 2023_Penske_EarlyContact n/a +VAR030 M VAR_CA n/a n/a n/a n/a VAR_194 Bulgaria Varna Varna 43.21877 27.91406 C14 MAMS-51333 5650 24 -4545 -4458 -4371 n/a K2a I2a1b1a2a~ petrous 1 1240K half ds haploid 16.463 484726 1.0197 0.1735 0.003449 0.00284 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Raiko Krauss 2023_Penske_EarlyContact n/a +VAR032 M VAR_CA n/a n/a n/a n/a VAR_155 Bulgaria Varna Varna 43.21877 27.91406 C14 MAMS-51328 5661 23 -4547 -4477 -4408 n/a K1a19 T1a2b petrous;tooth_38 1 1240K half ds haploid 5.935 667852 1.0175 n/a 0.005537 0.00409 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Raiko Krauss 2023_Penske_EarlyContact n/a +VAR033 F VAR_CA n/a n/a n/a n/a VAR_158 Bulgaria Varna Varna 43.21877 27.91406 C14 OxA-13688 5787 30 -4711 -4631 -4551 n/a U1a1d n/a petrous 1 1240K half ds haploid 5.046 586592 0.8435 n/a n/a n/a n/a PRJEB62503 Raiko Krauss 2023_Penske_EarlyContact n/a +VAR034 F VAR_CA n/a n/a n/a n/a VAR_75 Bulgaria Varna Varna 43.21877 27.91406 C14 MAMS-51334 5740 23 -4681 -4591 -4502 n/a H87 n/a petrous 1 1240K half ds haploid 3.159 336732 0.3718 0.1294 n/a n/a n/a PRJEB62503 Raiko Krauss 2023_Penske_EarlyContact n/a +YUN001 F YUN_CA n/a n/a n/a n/a Grave 110 Bulgaria Pazardzhik Yunatsite 42.23 24.26 C14 MAMS-45476 5614 31 -4504 -4432 -4360 n/a K2a n/a petrous 2 1240K half ds haploid 10.653 92836 1.2447 0.1035 n/a n/a n/a PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a +YUN003 F YUN_CA n/a YUN049 identical n/a Grave 69 Bulgaria Pazardzhik Yunatsite 42.23 24.26 n/a n/a n/a n/a n/a n/a n/a n/a U2+152 n/a petrous;tooth_47 3 1240K half ds haploid 13.802 931532 1.5303 0.1218 n/a n/a n/a PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a +YUN005 F YUN_CA n/a n/a n/a n/a Grave 104 Bulgaria Pazardzhik Yunatsite 42.23 24.26 C14 MAMS-45478 5570 24 -4453 -4404 -4356 n/a U4a2 n/a petrous;tooth_47 2 1240K half ds haploid 6.447 421904 0.5265 0.1255 n/a n/a n/a PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a +YUN006 F YUN_CA n/a YUN031 identical n/a Skeleton 127 Bulgaria Pazardzhik Yunatsite 42.23 24.26 C14 MAMS-45479 5589 26 -4462 -4409 -4356 n/a K1a n/a petrous 2 1240K half ds haploid 16.388 654756 1.8984 0.1197 n/a n/a n/a PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a +YUN007 M YUN_CA n/a n/a n/a n/a Grave 87 Bulgaria Pazardzhik Yunatsite 42.23 24.26 C14 MAMS-45480 5551 27 -4451 -4398 -4346 n/a H J2a1a2b2a2~ petrous;tooh_46 2 1240K half ds haploid 10.289 714271 1.2191 0.1022 0.002557 0.00282 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a +YUN009 M YUN_CA n/a n/a n/a n/a Grave 102 Bulgaria Pazardzhik Yunatsite 42.23 24.26 C14 MAMS-45482 5548 28 -4450 -4398 -4346 n/a H62 G2a2b2b1a2 petrous 1 1240K half ds haploid 7.323 593481 0.8752 0.0801 0.004825 0.00494 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a +YUN012 F YUN_CA n/a YUN015 first Dauther of YUN015 Grave 23 Bulgaria Pazardzhik Yunatsite 42.23 24.26 n/a n/a n/a n/a n/a n/a n/a n/a X2b n/a petrous 1 1240K half ds haploid 13.153 751668 1.4107 0.0989 n/a n/a n/a PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a +YUN013 M YUN_CA n/a n/a n/a n/a Grave 77/81 Bulgaria Pazardzhik Yunatsite 42.23 24.26 C14 MAMS-45483 5624 26 -4517 -4442 -4367 n/a H7 C1a2b petrous 1 1240K half ds haploid 8.63 533002 0.7021 0.1358 0.009945 0.00771 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a +YUN014 F YUN_CA n/a n/a n/a n/a Grave 67 Bulgaria Pazardzhik Yunatsite 42.23 24.26 C14 MAMS-45484 5577 29 -4459 -4406 -4354 n/a T2b23 n/a petrous 1 1240K half ds haploid 7.722 474178 0.5581 0.1208 n/a n/a n/a PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a +YUN015 M YUN_CA n/a YUN012 first Father of YUN012 Grave 24 Bulgaria Pazardzhik Yunatsite 42.23 24.26 C14 MAMS-45485 5541 28 -4450 -4396 -4342 n/a HV+16311 G2a2b petrous;tooth_33 2 1240K half ds haploid 1.318 178276 0.174 0.1301 n/a n/a n/a PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a +YUN019 F YUN_CA n/a n/a n/a n/a Grave 69A/80 Bulgaria Pazardzhik Yunatsite 42.23 24.26 n/a n/a n/a n/a n/a n/a n/a n/a U8b1a2b n/a petrous 1 1240K half ds haploid 8.697 690134 1.1626 0.0964 n/a n/a n/a PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a +YUN021 F YUN_CA n/a n/a n/a n/a Grave 92 Bulgaria Pazardzhik Yunatsite 42.23 24.26 C14 MAMS-45486 5431 25 -4341 -4294 -4247 n/a K1a2 n/a petrous 1 1240K half ds haploid 8.002 589505 0.8237 0.1009 n/a n/a n/a PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a +YUN025 F YUN_CA n/a n/a n/a n/a Grave 56 A Bulgaria Pazardzhik Yunatsite 42.23 24.26 n/a n/a n/a n/a n/a n/a n/a n/a X2b6 n/a petrous 1 1240K half ds haploid 9.063 603588 0.901 0.1304 n/a n/a n/a PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a +YUN026 M YUN_CA n/a n/a n/a n/a Grave 78 Bulgaria Pazardzhik Yunatsite 42.23 24.26 C14 MAMS-45489 5637 26 -4537 -4455 -4373 n/a T2e J2a1a2b2~ petrous;tooth_36 2 1240K half ds haploid 5.635 478939 0.578 0.1205 0.008432 0.00817 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a +YUN027 F YUN_CA I0781 n/a n/a n/a Skeleton 78/Grave 83 Bulgaria Pazardzhik Yunatsite 42.23 24.26 n/a n/a n/a n/a n/a n/a n/a n/a K1a+195 n/a petrous;tooth_43 2 1240K half ds haploid 7.795 780149 0.7891 0.1105 n/a n/a n/a PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a +YUN028 F YUN_CA n/a n/a n/a n/a Grave 98 Bulgaria Pazardzhik Yunatsite 42.23 24.26 C14 MAMS-45490 5625 26 -4517 -4442 -4368 n/a H n/a petrous 1 1240K half ds haploid 5.893 400904 0.473 0.1617 n/a n/a n/a PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a +YUN048 M YUN_CA n/a n/a n/a n/a Grave square 9 Bulgaria Pazardzhik Yunatsite 42.23 24.26 C14 MAMS-45503 5657 24 -4545 -4497 -4449 n/a K1a1 H2 petrous 1 1240K half ds haploid 17.693 338131 0.3659 0.1152 0.013745 0.0146 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a +YUN033 F YUN_EBA n/a n/a n/a n/a Burial 45 Bulgaria Pazardzhik Yunatsite 42.23 24.26 C14 MAMS-45491 4428 27 -3323 -3124 -2926 n/a T2e2a n/a petrous 1 1240K half ds haploid 4.545 356498 0.3979 0.1386 n/a n/a n/a PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a +YUN034 F YUN_EBA n/a n/a n/a n/a Burial 11 Bulgaria Pazardzhik Yunatsite 42.23 24.26 C14 MAMS-45492 4239 26 -2908 -2833 -2759 n/a N1a1a1a n/a petrous 1 1240K half ds haploid 11.624 163524 0.1587 0.1183 n/a n/a n/a PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a +YUN035 F YUN_EBA n/a YUN036 first siblings Burial 4 Ind 1 Bulgaria Pazardzhik Yunatsite 42.23 24.26 n/a n/a n/a n/a n/a n/a n/a n/a T2b n/a petrous 1 1240K half ds haploid 9.875 335705 0.3608 0.1014 n/a n/a n/a PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a +YUN036 F YUN_EBA n/a YUN035 first siblings Burial 4 Ind 2 Bulgaria Pazardzhik Yunatsite 42.23 24.26 C14 MAMS-45493 4167 25 -2880 -2760 -2640 n/a T2b n/a petrous 1 1240K half ds haploid 6.034 436824 0.5182 0.1015 n/a n/a n/a PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a +YUN037 M YUN_EBA n/a YUN038 first siblings Burial 8 Ind 1 Bulgaria Pazardzhik Yunatsite 42.23 24.26 n/a n/a n/a n/a n/a n/a n/a n/a W1h I2a1a2b1a petrous 1 1240K half ds haploid 5.994 461963 0.5714 0.1135 0.008509 0.00866 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a +YUN038 M YUN_EBA n/a YUN037 first siblings Burial 8 Ind 2 Bulgaria Pazardzhik Yunatsite 42.23 24.26 C14 MAMS-45494 4248 24 -2911 -2838 -2765 n/a W1h I2a1a2b1 petrous 1 1240K half ds haploid 8.215 580796 0.7736 0.0909 0.008647 0.00581 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a +YUN039 F YUN_EBA n/a n/a n/a n/a Burial 3 Bulgaria Pazardzhik Yunatsite 42.23 24.26 C14 MAMS-45495 4213 24 -2898 -2799 -2700 n/a H11a n/a petrous 1 1240K half ds haploid 6.445 398703 0.4618 0.1307 n/a n/a n/a PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a +YUN041 F YUN041 n/a n/a n/a n/a Burial 10 Bulgaria Pazardzhik Yunatsite 42.23 24.26 C14 MAMS-45496 4161 24 -2878 -2758 -2638 n/a K1c1 n/a petrous 1 1240K half ds haploid 12.146 785655 1.5206 0.1119 n/a n/a n/a PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a +YUN042 F YUN_EBA n/a n/a n/a n/a Burial 45C Bulgaria Pazardzhik Yunatsite 42.23 24.26 C14 MAMS-45497 4181 25 -2885 -2780 -2675 n/a H n/a petrous 1 1240K half ds haploid 10.236 729961 1.308 0.1166 n/a n/a n/a PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a +YUN043 F YUN_EBA n/a n/a n/a n/a Burial 6 Bulgaria Pazardzhik Yunatsite 42.23 24.26 C14 MAMS-45498 4162 26 -2879 -2757 -2636 n/a K1a3a n/a petrous 1 1240K half ds haploid 12.561 808840 1.589 0.0814 n/a n/a n/a PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a +YUN044 F YUN_EBA n/a n/a n/a n/a Grave 1 Bulgaria Pazardzhik Yunatsite 42.23 24.26 C14 MAMS-45499 n/a n/a n/a n/a n/a no collagen H1 n/a petrous 1 1240K half ds haploid 9.275 92391 0.0866 0.1198 n/a n/a n/a PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a +YUN045 F YUN_EBA n/a n/a n/a n/a Burial 22 Bulgaria Pazardzhik Yunatsite 42.23 24.26 C14 MAMS-45500 4270 24 -2913 -2896 -2879 n/a T2b n/a petrous 1 1240K half ds haploid 3.62 365020 0.4131 0.1195 n/a n/a n/a PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a +PTK003 M PTK_CA n/a n/a n/a n/a Area E; sq. 77, feature E11/ individual C Bulgaria Polski Tyrambesh Municipality Petko Karavelovo 43.30139 25.64299 C14 MAMS-51580 5721 24 -4674 -4567 -4461 n/a H3aq R1b1b petrous;tooth_38 2 1240K minus ss haploid 0.492 58805 0.0757 0.4105 n/a n/a n/a PRJEB62503 Alexander Chohadziev 2023_Penske_EarlyContact n/a +PTK004 M PTK_CA n/a n/a n/a n/a Area E; sq. 77, feature E11/ individual D Bulgaria Polski Tyrambesh Municipality Petko Karavelovo 43.30139 25.64299 C14 MAMS-38611 5708 28 -4656 -4555 -4455 n/a H3aq I2a1b petrous;tooth_18 2 1240K minus ss haploid 3.543 180795 0.2891 0.4218 0.003711 0.0471 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Alexander Chohadziev 2023_Penske_EarlyContact n/a +PTK005 M PTK_CA n/a n/a n/a n/a Area E; sq. 77, feature E11/ individual E Bulgaria Polski Tyrambesh Municipality Petko Karavelovo 43.30139 25.64299 n/a n/a n/a n/a n/a n/a n/a n/a U2+152 G2a2b2a1a1c1a1 petrous;tooth_18 2 1240K minus ss haploid 9.123 478729 1.0077 0.3905 0.018998 0.0115 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Alexander Chohadziev 2023_Penske_EarlyContact n/a +PIE003 F PIE_CA n/a n/a n/a n/a P104 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47794 5586 25 -4486 -4419 -4353 n/a K1a24 n/a petrous;tooth_23 2 1240K half ds haploid 12.118 467662 0.5836 0.1636 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE004 M PIE_CA n/a n/a n/a n/a L-complex 2/2 Tuete 54 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47795 5770 26 -4701 -4622 -4544 n/a H R1b1b petrous 1 1240K half ds haploid 37.704 728137 1.1985 0.197 0.036964 0.0085 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE005 M PIE_CA n/a n/a n/a n/a P13 T210-1 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47796 5699 26 -4608 -4531 -4455 n/a K1a+195 C1a2b petrous 1 1240K half ds haploid 32.84 589468 0.8159 0.1136 0.008914 0.00626 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE006 F PIE_CA n/a n/a n/a n/a P13 B483 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47797 5666 26 -4581 -4492 -4403 n/a T2+16189 n/a molar 1 1240K half ds haploid 44.127 343022 0.3754 0.1859 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE008 F PIE_CA n/a n/a n/a n/a P14 T615 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47799 5593 26 -4489 -4422 -4355 n/a T2b n/a petrous;tooth_26 2 1240K half ds haploid 26.51 654477 1.0184 0.1435 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE010 F PIE_CA n/a PIE009 second n/a P10 M644 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47801 5485 28 -4441 -4348 -4256 n/a K1a n/a petrous 1 1240K half ds haploid 1.065 63989 0.0584 0.1841 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE012 F PIE_CA n/a n/a n/a n/a P11 L273-2 (?) Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47802 5705 26 -4648 -4551 -4455 n/a H7 n/a petrous 1 1240K half ds haploid 8.948 440103 0.5331 0.268 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE013 M PIE_CA n/a n/a n/a n/a P11 B023 (?) Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47803 5623 26 -4536 -4449 -4362 n/a H R1b1b petrous 1 1240K half ds haploid 9.721 400783 0.4588 0.1717 0.010846 0.0115 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE014 F PIE_CA n/a n/a n/a n/a P10 J402b Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47804 5641 27 -4541 -4455 -4369 n/a H7 n/a petrous;molar 2 1240K half ds haploid 17.676 421183 0.4902 0.209 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE015 M PIE_CA n/a n/a n/a n/a L-Komplex 1/2 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47805 5704 26 -4612 -4533 -4455 n/a V1a G2a2b2a1a1c2 petrous 1 1240K half ds haploid 32.72 623559 0.9794 0.2336 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE017 M PIE_CA n/a n/a n/a n/a P12 B208 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47806 5761 29 -4708 -4622 -4537 n/a J1 R1b1b petrous 1 1240K half ds haploid 57.52 650841 1.0442 0.1675 0.018341 0.00761 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE018 F PIE_CA n/a n/a n/a n/a P13 T213a Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47807 5602 26 -4494 -4425 -4357 n/a - n/a petrous 1 1240K half ds haploid 1.842 108635 0.1006 0.1418 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE019 M PIE_CA n/a n/a n/a n/a P10 M647 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47808 n/a n/a n/a n/a n/a no collagen T2b R1b1b petrous 1 1240K half ds haploid 11.546 418031 0.5197 0.1317 0.006744 0.00978 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE022 M PIE_CA n/a n/a n/a n/a P11 N707 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47809 5531 25 -4445 -4391 -4338 n/a W3b G2a2a petrous;tooth 2 1240K half ds haploid 3.93 97953 0.0911 0.1852 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE023 M PIE_CA n/a n/a n/a n/a P13 T210-2 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47810 5676 29 -4603 -4525 -4447 n/a J2b1 R1b1b petrous;tooth 2 1240K half ds haploid 38.607 747469 1.2931 0.1116 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE025 M PIE_CA n/a n/a n/a n/a P09 F102 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47812 5678 24 -4586 -4517 -4448 n/a H5 T1 petrous 1 1240K half ds haploid 16.099 264144 0.2724 0.1683 -0.005324 0.00528 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE026 M PIE_CA n/a n/a n/a n/a P05 B123a Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47813 5651 28 -4546 -4458 -4370 n/a U3a1 R1b1 petrous 1 1240K half ds haploid 3.162 116600 0.1099 0.1978 0.419199 0.29 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE028 M PIE_CA n/a n/a n/a n/a P11 L280 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47814 5600 27 -4494 -4425 -4356 n/a K1a J2a1 petrous 1 1240K half ds haploid 30.031 630850 0.9248 0.2038 0.011423 0.00605 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE029 M PIE_CA n/a n/a n/a n/a P11 F881 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47815 5696 26 -4605 -4530 -4455 n/a K1a+195 G2a2b2b tooth_13 1 1240K half ds haploid 8.339 338277 0.3891 0.2335 0.011625 0.0142 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE030 F PIE_CA n/a n/a n/a n/a P09 J376b Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47816 5419 27 -4341 -4259 -4177 n/a T2c1d1 n/a tooth_84 2 1240K half ds haploid 1.552 63616 0.0383 0.2275 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a PIE032 M PIE_CA n/a n/a n/a n/a P10 J390 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47817 5574 28 -4453 -4402 -4351 n/a T2b G2a tooth 1 1240K half ds haploid 2.196 89763 0.0847 0.2416 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a -PIE033 M PIE_CA n/a n/a n/a n/a P08 B114 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47818 5734 28 -4681 -4588 -4496 n/a X2i+@225 G2a2a1a2a Bone (Pars petrosa), tooth 27 2 1240K half ds haploid 47.304 693600 1.1553 0.1245 0.008693 0.00495 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a -PIE034 F PIE_CA n/a n/a n/a n/a P08 B 108a)1 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47819 5741 22 -4681 -4591 -4502 n/a H5 n/a Bone (Pars petrosa), tooh 47 3 1240K half ds haploid 61.672 638978 0.9149 0.1321 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a -PIE035 F PIE_CA n/a n/a n/a n/a P11 L293b Individuum B Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47820 5700 23 -4607 -4532 -4457 n/a K1 n/a Bone (Pars petrosa), tooth 2 1240K half ds haploid 6.388 300851 0.3276 0.2172 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a -PIE037 M PIE_CA n/a n/a n/a n/a P13 L121 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47821 5439 26 -4346 -4297 -4249 n/a N1a1a1a3 H2 Bone (Pars petrosa), tooth 1 1240K half ds haploid 27.351 606612 0.828 0.1349 0.006182 0.00569 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a -PIE038 F PIE_CA n/a n/a n/a n/a P12 L057 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47822 5722 26 -4676 -4568 -4461 n/a K1a n/a Bone (Pars petrosa), tooth 36 2 1240K half ds haploid 46.639 776308 1.4672 0.1488 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a -PIE039 F PIE039 n/a n/a n/a n/a P11 N743 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47823 6274 28 -5319 -5225 -5132 n/a T2c1d1 n/a Bone (Pars petrosa) 1 1240K half ds haploid 10.811 303265 0.3228 0.1445 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a -PIE041 F PIE_CA n/a n/a n/a n/a P10 L234 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47824 5706 22 -4611 -4534 -4457 n/a K1a+195 n/a Bone (Pars petrosa), tooth 26 2 1240K half ds haploid 57.234 712188 1.1898 0.1069 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a -PIE042 M PIE_CA n/a n/a n/a n/a P13-T222-2 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47825 5638 22 -4539 -4454 -4370 n/a T2 R1b1b Bone (Pars petrosa), tooth 36 2 1240K half ds haploid 1.116 61089 0.0555 0.1569 0.276243 0.277 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a -PIE043 F PIE_CA n/a n/a n/a n/a P10 M640 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47826 5996 28 -4986 -4890 -4795 n/a J1c15 n/a tooth 26 1 1240K half ds haploid 5.197 226726 0.2328 0.1536 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a -PIE044 M PIE_CA n/a n/a n/a n/a P10 M645b Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47827 5614 32 -4533 -4445 -4357 n/a - J2a1 Bone (Pars petrosa) 1 1240K half ds haploid 1.431 72702 0.0656 0.1521 0.351775 0.421 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a -PIE048 F PIE_CA n/a n/a n/a n/a L-Komplex 1/2 101 Individuum D Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47828 5728 26 -4678 -4585 -4493 n/a H4a1 n/a tooth 46 1 1240K half ds haploid 5.007 237934 0.2575 0.2345 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a -PIE050 M PIE_CA n/a n/a n/a n/a P12 L006 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47829 5664 26 -4581 -4490 -4400 n/a H11 C1a2b Bone (Pars petrosa) 1 1240K half ds haploid 58.393 810421 1.5719 0.097 0.00793 0.00363 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a -PIE053 F PIE_CA n/a n/a n/a n/a P13 T214-1 (A) Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47830 5599 26 -4492 -4424 -4356 n/a H11b n/a Bone (Pars petrosa), tooth 1 1240K half ds haploid 24.877 619026 0.9071 0.1214 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a -PIE054 M PIE_CA n/a PIE058 second n/a P18 W650 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47831 5424 27 -4343 -4292 -4242 n/a I5 G2a2b2a Bone (Pars petrosa), tooth 47 2 1240K half ds haploid 33.216 706997 1.1628 0.1289 0.006114 0.00399 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a -PIE057 M PIE_CA n/a n/a n/a n/a P18 W629 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47832 5589 26 -4486 -4420 -4355 n/a HV+16311 C1a2b Bone (Pars petrosa) 1 1240K half ds haploid 66.356 850492 1.7612 0.1061 0.009644 0.0037 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a -PIE058 M PIE_CA n/a PIE054 second n/a P18 W642 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47833 5421 26 -4341 -4291 -4242 n/a I5 G2a2b2a1 Bone (Pars petrosa), tooth 2 1240K half ds haploid 29.208 642462 0.9433 0.128 0.006893 0.00555 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a -PIE06061 M PIE060 n/a PIE061 identical n/a P18 F708;P18 F738 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47834 5813 25 -4776 -4613 -4551 n/a H+152 I2a1b1a2a tooth 33 1 1240K half ds haploid 40.173 840031 0.958 0.1859 -0.003993 0.00135 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Svend Hansen 2023_Penske_EarlyContact merged with PIE061 -PIE062 M PIE_CA n/a n/a n/a n/a P16 H205 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47836 5441 26 -4346 -4298 -4250 n/a H G2a tooth 16 1 1240K half ds haploid 3.364 156496 0.1565 0.1826 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a -PIE063 M PIE_CA n/a n/a n/a n/a P15 T508 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47837 5657 26 -4549 -4460 -4371 n/a I5a C1a2b Bone (Pars petrosa), tooth 37 2 1240K half ds haploid 27.816 575587 0.7974 0.1549 0.0097 0.00678 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a -PIE064 F PIE_CA n/a n/a n/a n/a P15 B730 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47838 5672 26 -4589 -4499 -4409 n/a K1a1b n/a tooth 16 1 1240K half ds haploid 39.252 251024 0.259 0.1759 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a -PIE065 F PIE_CA n/a n/a n/a n/a P12L006 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47839 5721 27 -4676 -4568 -4460 n/a K1a4 n/a Bone (Pars petrosa) 1 1240K half ds haploid 29.091 569545 0.785 0.0992 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a -PIE069 F PIE_CA n/a n/a n/a n/a P16 B068 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47840 5683 23 -4588 -4519 -4451 n/a H n/a Bone (Pars petrosa) 1 1240K half ds haploid 12.215 267964 0.2735 0.1145 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a -PIE071631 M PIE_CA n/a PIE016, PIE031 identical n/a P11 N704;P11 N708;P11 N700 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47798 4933 25 -3770 -3708 -3646 n/a K1a2 J2a tooth 16 2 1240K half ds haploid 12.246 563823 0.0493 0.2325 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a -PIE074 F PIE_CA n/a n/a n/a n/a P17 H907 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47842 5475 25 -4360 -4308 -4256 n/a T2c1d+152 n/a Bone (Pars petrosa), tooth 2 1240K half ds haploid 47.926 643577 0.9785 0.1476 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a -PIE075 F PIE_CA n/a n/a n/a n/a P17 H923 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47843 5508 26 -4444 -4357 -4270 n/a H n/a Bone (Pars petrosa) 1 1240K half ds haploid 10.029 215398 0.2135 0.1945 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a -PIE076 M PIE_CA n/a n/a n/a n/a P16 H203 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47844 5437 26 -4345 -4297 -4249 n/a H2 C1a2b Bone (Pars petrosa) 1 1240K half ds haploid 43.167 639198 0.8851 0.1035 -0.002656 0.000837 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a -PIE077 F PIE_CA n/a n/a n/a n/a P16 H214 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47845 5411 26 -4339 -4257 -4176 n/a T2b+152 n/a Bone (Pars petrosa) 1 1240K half ds haploid 52.614 714491 1.2985 0.1727 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE033 M PIE_CA n/a n/a n/a n/a P08 B114 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47818 5734 28 -4681 -4588 -4496 n/a X2i+@225 G2a2a1a2a petrous;tooth_27 2 1240K half ds haploid 47.304 693600 1.1553 0.1245 0.008693 0.00495 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE034 F PIE_CA n/a n/a n/a n/a P08 B 108a)1 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47819 5741 22 -4681 -4591 -4502 n/a H5 n/a petrous;tooh_47 3 1240K half ds haploid 61.672 638978 0.9149 0.1321 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE035 F PIE_CA n/a n/a n/a n/a P11 L293b Individuum B Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47820 5700 23 -4607 -4532 -4457 n/a K1 n/a petrous;tooth 2 1240K half ds haploid 6.388 300851 0.3276 0.2172 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE037 M PIE_CA n/a n/a n/a n/a P13 L121 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47821 5439 26 -4346 -4297 -4249 n/a N1a1a1a3 H2 petrous;tooth 1 1240K half ds haploid 27.351 606612 0.828 0.1349 0.006182 0.00569 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE038 F PIE_CA n/a n/a n/a n/a P12 L057 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47822 5722 26 -4676 -4568 -4461 n/a K1a n/a petrous;tooth_36 2 1240K half ds haploid 46.639 776308 1.4672 0.1488 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE039 F PIE039 n/a n/a n/a n/a P11 N743 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47823 6274 28 -5319 -5225 -5132 n/a T2c1d1 n/a petrous 1 1240K half ds haploid 10.811 303265 0.3228 0.1445 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE041 F PIE_CA n/a n/a n/a n/a P10 L234 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47824 5706 22 -4611 -4534 -4457 n/a K1a+195 n/a petrous;tooth_26 2 1240K half ds haploid 57.234 712188 1.1898 0.1069 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE042 M PIE_CA n/a n/a n/a n/a P13-T222-2 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47825 5638 22 -4539 -4454 -4370 n/a T2 R1b1b petrous;tooth_36 2 1240K half ds haploid 1.116 61089 0.0555 0.1569 0.276243 0.277 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE043 F PIE_CA n/a n/a n/a n/a P10 M640 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47826 5996 28 -4986 -4890 -4795 n/a J1c15 n/a tooth_26 1 1240K half ds haploid 5.197 226726 0.2328 0.1536 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE044 M PIE_CA n/a n/a n/a n/a P10 M645b Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47827 5614 32 -4533 -4445 -4357 n/a - J2a1 petrous 1 1240K half ds haploid 1.431 72702 0.0656 0.1521 0.351775 0.421 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE048 F PIE_CA n/a n/a n/a n/a L-Komplex 1/2 101 Individuum D Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47828 5728 26 -4678 -4585 -4493 n/a H4a1 n/a tooth_46 1 1240K half ds haploid 5.007 237934 0.2575 0.2345 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE050 M PIE_CA n/a n/a n/a n/a P12 L006 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47829 5664 26 -4581 -4490 -4400 n/a H11 C1a2b petrous 1 1240K half ds haploid 58.393 810421 1.5719 0.097 0.00793 0.00363 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE053 F PIE_CA n/a n/a n/a n/a P13 T214-1 (A) Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47830 5599 26 -4492 -4424 -4356 n/a H11b n/a petrous;tooth 1 1240K half ds haploid 24.877 619026 0.9071 0.1214 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE054 M PIE_CA n/a PIE058 second n/a P18 W650 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47831 5424 27 -4343 -4292 -4242 n/a I5 G2a2b2a petrous;tooth_47 2 1240K half ds haploid 33.216 706997 1.1628 0.1289 0.006114 0.00399 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE057 M PIE_CA n/a n/a n/a n/a P18 W629 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47832 5589 26 -4486 -4420 -4355 n/a HV+16311 C1a2b petrous 1 1240K half ds haploid 66.356 850492 1.7612 0.1061 0.009644 0.0037 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE058 M PIE_CA n/a PIE054 second n/a P18 W642 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47833 5421 26 -4341 -4291 -4242 n/a I5 G2a2b2a1 petrous;tooth 2 1240K half ds haploid 29.208 642462 0.9433 0.128 0.006893 0.00555 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE06061 M PIE060 n/a PIE061 identical n/a P18 F708;P18 F738 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47834 5813 25 -4776 -4613 -4551 n/a H+152 I2a1b1a2a tooth_33 1 1240K half ds haploid 40.173 840031 0.958 0.1859 -0.003993 0.00135 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Svend Hansen 2023_Penske_EarlyContact merged with PIE061 +PIE062 M PIE_CA n/a n/a n/a n/a P16 H205 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47836 5441 26 -4346 -4298 -4250 n/a H G2a tooth_16 1 1240K half ds haploid 3.364 156496 0.1565 0.1826 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE063 M PIE_CA n/a n/a n/a n/a P15 T508 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47837 5657 26 -4549 -4460 -4371 n/a I5a C1a2b petrous;tooth_37 2 1240K half ds haploid 27.816 575587 0.7974 0.1549 0.0097 0.00678 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE064 F PIE_CA n/a n/a n/a n/a P15 B730 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47838 5672 26 -4589 -4499 -4409 n/a K1a1b n/a tooth_16 1 1240K half ds haploid 39.252 251024 0.259 0.1759 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE065 F PIE_CA n/a n/a n/a n/a P12L006 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47839 5721 27 -4676 -4568 -4460 n/a K1a4 n/a petrous 1 1240K half ds haploid 29.091 569545 0.785 0.0992 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE069 F PIE_CA n/a n/a n/a n/a P16 B068 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47840 5683 23 -4588 -4519 -4451 n/a H n/a petrous 1 1240K half ds haploid 12.215 267964 0.2735 0.1145 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE071631 M PIE_CA n/a PIE016, PIE031 identical n/a P11 N704;P11 N708;P11 N700 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47798 4933 25 -3770 -3708 -3646 n/a K1a2 J2a tooth_16 2 1240K half ds haploid 12.246 563823 0.0493 0.2325 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE074 F PIE_CA n/a n/a n/a n/a P17 H907 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47842 5475 25 -4360 -4308 -4256 n/a T2c1d+152 n/a petrous;tooth 2 1240K half ds haploid 47.926 643577 0.9785 0.1476 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE075 F PIE_CA n/a n/a n/a n/a P17 H923 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47843 5508 26 -4444 -4357 -4270 n/a H n/a petrous 1 1240K half ds haploid 10.029 215398 0.2135 0.1945 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE076 M PIE_CA n/a n/a n/a n/a P16 H203 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47844 5437 26 -4345 -4297 -4249 n/a H2 C1a2b petrous 1 1240K half ds haploid 43.167 639198 0.8851 0.1035 -0.002656 0.000837 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE077 F PIE_CA n/a n/a n/a n/a P16 H214 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47845 5411 26 -4339 -4257 -4176 n/a T2b+152 n/a petrous 1 1240K half ds haploid 52.614 714491 1.2985 0.1727 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a PIE078 M PIE078 n/a n/a n/a n/a P16 N513 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47846 4463 25 -3335 -3180 -3026 n/a K1a1a I2a1a2b tooth 2 1240K half ds haploid 9.686 306182 0.3902 0.218 0.010045 0.0145 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a -KTL006 M KTL_A n/a n/a n/a n/a Grave 168 Ukraine Odessa Oblast Kartal 45.31667 28.45 C14 MAMS-48815 5205 29 -4156 -4058 -3959 n/a U5a1a I2a1b1a2a2a Bone (Pars petrosa) 1 1240K half ds haploid 40.855 947144 2.2985 0.1274 0.005365 0.00213 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Igor Bruyakov, Igor Manzura 2023_Penske_EarlyContact n/a -MAJ002 F MAJ n/a n/a n/a n/a Flat Nekrop., Grave 1 Ukraine Odessa Oblast Majaky 46.41222 30.27306 C14 MAMS-48818 5498 26 -4441 -4351 -4261 n/a I1b*1 n/a Bone (Pars petrosa), tooth 55 2 1240K half ds haploid 47.263 923516 2.2976 0.1389 n/a n/a n/a PRJEB62503 Igor Bruyakov, Igor Manzura 2023_Penske_EarlyContact n/a -KTL001 M KTL_A n/a n/a n/a n/a Grave 10, white label Ukraine Odessa Oblast Kartal 45.31667 28.45 C14 MAMS-48810 4609 26 -3502 -3423 -3343 n/a H2a1 I2a1b1a2a2a2 Bone (Pars petrosa), tooth 36 3 1240K half mixed haploid 27.386 669917 1.1102 0.3159 0.013279 0.00463 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Igor Bruyakov, Igor Manzura 2023_Penske_EarlyContact n/a -KTL002 F KTL_B n/a n/a n/a n/a Grave 10, blue label Ukraine Odessa Oblast Kartal 45.31667 28.45 C14 MAMS-48811 4806 25 -3641 -3585 -3528 n/a J1c5 n/a Bone (Pars petrosa), tooth 48 3 1240K half mixed haploid 28.092 593998 0.8606 0.334 0.278426 0.014 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Igor Bruyakov, Igor Manzura 2023_Penske_EarlyContact n/a +KTL006 M KTL_A n/a n/a n/a n/a Grave 168 Ukraine Odessa Oblast Kartal 45.31667 28.45 C14 MAMS-48815 5205 29 -4156 -4058 -3959 n/a U5a1a I2a1b1a2a2a petrous 1 1240K half ds haploid 40.855 947144 2.2985 0.1274 0.005365 0.00213 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Igor Bruyakov, Igor Manzura 2023_Penske_EarlyContact n/a +MAJ002 F MAJ n/a n/a n/a n/a Flat Nekrop., Grave 1 Ukraine Odessa Oblast Majaky 46.41222 30.27306 C14 MAMS-48818 5498 26 -4441 -4351 -4261 n/a I1b*1 n/a petrous;tooth_55 2 1240K half ds haploid 47.263 923516 2.2976 0.1389 n/a n/a n/a PRJEB62503 Igor Bruyakov, Igor Manzura 2023_Penske_EarlyContact n/a +KTL001 M KTL_A n/a n/a n/a n/a Grave 10, white label Ukraine Odessa Oblast Kartal 45.31667 28.45 C14 MAMS-48810 4609 26 -3502 -3423 -3343 n/a H2a1 I2a1b1a2a2a2 petrous;tooth_36 3 1240K half mixed haploid 27.386 669917 1.1102 0.3159 0.013279 0.00463 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Igor Bruyakov, Igor Manzura 2023_Penske_EarlyContact n/a +KTL002 F KTL_B n/a n/a n/a n/a Grave 10, blue label Ukraine Odessa Oblast Kartal 45.31667 28.45 C14 MAMS-48811 4806 25 -3641 -3585 -3528 n/a J1c5 n/a petrous;tooth_48 3 1240K half mixed haploid 28.092 593998 0.8606 0.334 0.278426 0.014 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Igor Bruyakov, Igor Manzura 2023_Penske_EarlyContact n/a KTL003 F KTL_A n/a n/a n/a n/a Grave 14 Ukraine Odessa Oblast Kartal 45.31667 28.45 C14 MAMS-48812 4840 26 -3696 -3613 -3530 n/a T2c1c1 n/a molar 2 1240K half mixed haploid 29.272 630628 1.0195 0.3062 0.257031 0.0119 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Igor Bruyakov, Igor Manzura 2023_Penske_EarlyContact n/a -KTL004 F KTL_B n/a n/a n/a n/a Grave 20 Ukraine Odessa Oblast Kartal 45.31667 28.45 C14 MAMS-48813 5064 27 -3952 -3872 -3792 n/a T2b n/a Bone (Pars petrosa), tooth 16 3 1240K half mixed haploid 34.375 846500 1.8239 0.3185 0.275535 0.00905 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Igor Bruyakov, Igor Manzura 2023_Penske_EarlyContact n/a -KTL005 M KTL_B n/a n/a n/a n/a Grave 36 (not grave 35) Ukraine Odessa Oblast Kartal 45.31667 28.45 C14 MAMS-48814 4905 28 -3763 -3701 -3638 n/a U3b3 R1b tooth 33 2 1240K half mixed haploid 31.087 688629 1.0723 0.329 0.009055 0.00418 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Igor Bruyakov, Igor Manzura 2023_Penske_EarlyContact n/a -KTL007 F KTL_A n/a n/a n/a n/a Grave 193 Ukraine Odessa Oblast Kartal 45.31667 28.45 C14 MAMS-48816 5104 27 -3971 -3886 -3801 n/a U4 n/a Bone (Pars petrosa), molar 3 1240K half mixed haploid 18.585 427735 0.5147 0.4079 0.252086 0.018 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Igor Bruyakov, Igor Manzura 2023_Penske_EarlyContact n/a -KTL008 F KTL_A n/a n/a n/a n/a Grave 204 Ukraine Odessa Oblast Kartal 45.31667 28.45 C14 MAMS-48817 4895 26 -3756 -3696 -3636 n/a U2e1b2 n/a Bone (Pars petrosa), molar 3 1240K half mixed haploid 12.381 230550 0.2294 0.3609 0.231345 0.0309 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Igor Bruyakov, Igor Manzura 2023_Penske_EarlyContact n/a -MAJ003 M MAJ n/a n/a n/a n/a Flat Nekrop., Grave 12 Ukraine Odessa Oblast Majaky 46.41222 30.27306 C14 MAMS-48819 4978 28 -3900 -3777 -3653 n/a U5a1a1 G2a2b2a Bone (Pars petrosa) 2 1240K half mixed haploid 34.749 888510 2.1025 0.1921 0.00431 0.00203 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Igor Bruyakov, Igor Manzura 2023_Penske_EarlyContact n/a -MAJ004 F MAJ_EBA n/a n/a n/a n/a Flat Nekrop., Grave 5, skeleton 2 Ukraine Odessa Oblast Majaky 46.41222 30.27306 C14 MAMS-48820 4107 25 -2863 -2686 -2508 n/a U5b2a1a1 n/a Incisor 2 1240K half mixed haploid 16.516 301867 0.3139 0.367 0.296892 0.0292 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Igor Bruyakov, Igor Manzura 2023_Penske_EarlyContact n/a -MAJ008 F MAJ n/a n/a n/a n/a Flat Nekrop., Grave 14, (woman?) Ukraine Odessa Oblast Majaky 46.41222 30.27306 C14 MAMS-48821 5270 28 -4231 -4110 -3989 n/a I1a1 n/a Bone (Pars petrosa), tooth 47 3 1240K half mixed haploid 12.707 219691 0.2126 0.3564 0.281513 0.039 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Igor Bruyakov, Igor Manzura 2023_Penske_EarlyContact n/a -MAJ009 M MAJ n/a MAJ020 second n/a Flat Nekrop., Grave 16 Ukraine Odessa Oblast Majaky 46.41222 30.27306 C14 MAMS-48822 5545 27 -4445 -4395 -4345 n/a H5 R1b1a2a2 Bone (Pars petrosa), tooth 46 3 1240K half mixed haploid 17.622 368493 0.4567 0.3638 0.014609 0.00943 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Igor Bruyakov, Igor Manzura 2023_Penske_EarlyContact n/a -MAJ017 M MAJ_EBA n/a n/a n/a n/a Kurgan 1, Grave 22 Ukraine Odessa Oblast Majaky 46.41222 30.27306 C14 MAMS-48823 4242 27 -2910 -2808 -2705 n/a H2a3 R1b1a1b1b Bone (Pars petrosa), tooth 47 3 1240K half mixed haploid 71.385 867997 3.3307 0.2206 0.008496 0.00248 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Igor Bruyakov, Igor Manzura 2023_Penske_EarlyContact n/a -MAJ019 F MAJ_EBA n/a n/a n/a n/a Kurgan 1, Grave 18 Ukraine Odessa Oblast Majaky 46.41222 30.27306 C14 MAMS-48824 4185 26 -2887 -2778 -2669 n/a H1 n/a tooth 26 2 1240K half mixed haploid 19.562 313281 0.3303 0.3577 0.279141 0.0274 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Igor Bruyakov, Igor Manzura 2023_Penske_EarlyContact n/a -MAJ020 F MAJ n/a MAJ009 second n/a Kurgan 3, Grave 12 Ukraine Odessa Oblast Majaky 46.41222 30.27306 C14 MAMS-48825 5058 21 -3948 -3871 -3794 n/a U5a1f1 n/a Bone (Pars petrosa), tooth 48 2 1240K half mixed haploid 32.517 733609 1.25 0.3133 0.25597 0.0105 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Igor Bruyakov, Igor Manzura 2023_Penske_EarlyContact n/a -MAJ023 F MAJ n/a n/a n/a n/a N13 полка 2 Ukraine Odessa Oblast Majaky 46.41222 30.27306 C14 MAMS-48826 5311 25 -4239 -4145 -4050 n/a I5 n/a Bone (Pars petrosa), tooth 37 3 1240K half mixed haploid 22.177 491411 0.638 0.3386 0.257698 0.0155 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Igor Bruyakov, Igor Manzura 2023_Penske_EarlyContact n/a -UBK003 F USV USV003 n/a n/a n/a Grave 4 Ukraine Odessa Oblast Usatove-Bolšoj Kujalnik 46.52603 30.63042 C14 MAMS-48804 5110 24 -3972 -3888 -3804 n/a U5a1f1 n/a Molar 2 1240K half mixed haploid 22.095 413694 0.4878 0.303 0.307595 0.0215 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Igor Bruyakov, Igor Manzura 2023_Penske_EarlyContact n/a -UBK006 M USV USV006 n/a n/a n/a Grave 1, Skeleton 4 Ukraine Odessa Oblast Usatove-Bolšoj Kujalnik 46.52603 30.63042 C14 MAMS-48806 4853 23 -3701 -3618 -3535 n/a U4a2 I2a1a tooth 46 3 1240K half mixed haploid 26.124 504626 0.6072 0.3232 0.005409 0.00541 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Igor Bruyakov, Igor Manzura 2023_Penske_EarlyContact n/a -USV004 F USV USV004 n/a n/a n/a Kurgan II - 9, Grave 4 Ukraine Odessa Oblast Usatove-Bolšoj Kujalnik 46.52603 30.63042 C14 MAMS-48808 4914 26 -3764 -3703 -3641 n/a n/a n/a Bone (Pars petrosa) 2 1240K half mixed haploid 22.487 428685 0.4841 0.1907 0.243776 0.0193 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Igor Bruyakov, Igor Manzura 2023_Penske_EarlyContact n/a -USV005 F USV USV005 n/a n/a n/a Kurgan II-6, Grave 4 Ukraine Odessa Oblast Usatove-Bolšoj Kujalnik 46.52603 30.63042 C14 MAMS-48809 4819 26 -3646 -3588 -3529 n/a X2b n/a Bone (Pars petrosa), molar 3 1240K half mixed haploid 33.985 910310 1.9788 0.1756 0.293157 0.00835 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Igor Bruyakov, Igor Manzura 2023_Penske_EarlyContact n/a +KTL004 F KTL_B n/a n/a n/a n/a Grave 20 Ukraine Odessa Oblast Kartal 45.31667 28.45 C14 MAMS-48813 5064 27 -3952 -3872 -3792 n/a T2b n/a petrous;tooth_16 3 1240K half mixed haploid 34.375 846500 1.8239 0.3185 0.275535 0.00905 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Igor Bruyakov, Igor Manzura 2023_Penske_EarlyContact n/a +KTL005 M KTL_B n/a n/a n/a n/a Grave 36 (not grave 35) Ukraine Odessa Oblast Kartal 45.31667 28.45 C14 MAMS-48814 4905 28 -3763 -3701 -3638 n/a U3b3 R1b tooth_33 2 1240K half mixed haploid 31.087 688629 1.0723 0.329 0.009055 0.00418 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Igor Bruyakov, Igor Manzura 2023_Penske_EarlyContact n/a +KTL007 F KTL_A n/a n/a n/a n/a Grave 193 Ukraine Odessa Oblast Kartal 45.31667 28.45 C14 MAMS-48816 5104 27 -3971 -3886 -3801 n/a U4 n/a petrous;molar 3 1240K half mixed haploid 18.585 427735 0.5147 0.4079 0.252086 0.018 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Igor Bruyakov, Igor Manzura 2023_Penske_EarlyContact n/a +KTL008 F KTL_A n/a n/a n/a n/a Grave 204 Ukraine Odessa Oblast Kartal 45.31667 28.45 C14 MAMS-48817 4895 26 -3756 -3696 -3636 n/a U2e1b2 n/a petrous;molar 3 1240K half mixed haploid 12.381 230550 0.2294 0.3609 0.231345 0.0309 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Igor Bruyakov, Igor Manzura 2023_Penske_EarlyContact n/a +MAJ003 M MAJ n/a n/a n/a n/a Flat Nekrop., Grave 12 Ukraine Odessa Oblast Majaky 46.41222 30.27306 C14 MAMS-48819 4978 28 -3900 -3777 -3653 n/a U5a1a1 G2a2b2a petrous 2 1240K half mixed haploid 34.749 888510 2.1025 0.1921 0.00431 0.00203 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Igor Bruyakov, Igor Manzura 2023_Penske_EarlyContact n/a +MAJ004 F MAJ_EBA n/a n/a n/a n/a Flat Nekrop., Grave 5, skeleton 2 Ukraine Odessa Oblast Majaky 46.41222 30.27306 C14 MAMS-48820 4107 25 -2863 -2686 -2508 n/a U5b2a1a1 n/a incisor 2 1240K half mixed haploid 16.516 301867 0.3139 0.367 0.296892 0.0292 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Igor Bruyakov, Igor Manzura 2023_Penske_EarlyContact n/a +MAJ008 F MAJ n/a n/a n/a n/a Flat Nekrop., Grave 14, (woman?) Ukraine Odessa Oblast Majaky 46.41222 30.27306 C14 MAMS-48821 5270 28 -4231 -4110 -3989 n/a I1a1 n/a petrous;tooth_47 3 1240K half mixed haploid 12.707 219691 0.2126 0.3564 0.281513 0.039 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Igor Bruyakov, Igor Manzura 2023_Penske_EarlyContact n/a +MAJ009 M MAJ n/a MAJ020 second n/a Flat Nekrop., Grave 16 Ukraine Odessa Oblast Majaky 46.41222 30.27306 C14 MAMS-48822 5545 27 -4445 -4395 -4345 n/a H5 R1b1a2a2 petrous;tooth_46 3 1240K half mixed haploid 17.622 368493 0.4567 0.3638 0.014609 0.00943 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Igor Bruyakov, Igor Manzura 2023_Penske_EarlyContact n/a +MAJ017 M MAJ_EBA n/a n/a n/a n/a Kurgan 1, Grave 22 Ukraine Odessa Oblast Majaky 46.41222 30.27306 C14 MAMS-48823 4242 27 -2910 -2808 -2705 n/a H2a3 R1b1a1b1b petrous;tooth_47 3 1240K half mixed haploid 71.385 867997 3.3307 0.2206 0.008496 0.00248 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Igor Bruyakov, Igor Manzura 2023_Penske_EarlyContact n/a +MAJ019 F MAJ_EBA n/a n/a n/a n/a Kurgan 1, Grave 18 Ukraine Odessa Oblast Majaky 46.41222 30.27306 C14 MAMS-48824 4185 26 -2887 -2778 -2669 n/a H1 n/a tooth_26 2 1240K half mixed haploid 19.562 313281 0.3303 0.3577 0.279141 0.0274 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Igor Bruyakov, Igor Manzura 2023_Penske_EarlyContact n/a +MAJ020 F MAJ n/a MAJ009 second n/a Kurgan 3, Grave 12 Ukraine Odessa Oblast Majaky 46.41222 30.27306 C14 MAMS-48825 5058 21 -3948 -3871 -3794 n/a U5a1f1 n/a petrous;tooth_48 2 1240K half mixed haploid 32.517 733609 1.25 0.3133 0.25597 0.0105 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Igor Bruyakov, Igor Manzura 2023_Penske_EarlyContact n/a +MAJ023 F MAJ n/a n/a n/a n/a N13 полка 2 Ukraine Odessa Oblast Majaky 46.41222 30.27306 C14 MAMS-48826 5311 25 -4239 -4145 -4050 n/a I5 n/a petrous;tooth_37 3 1240K half mixed haploid 22.177 491411 0.638 0.3386 0.257698 0.0155 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Igor Bruyakov, Igor Manzura 2023_Penske_EarlyContact n/a +UBK003 F USV USV003 n/a n/a n/a Grave 4 Ukraine Odessa Oblast Usatove-Bolšoj Kujalnik 46.52603 30.63042 C14 MAMS-48804 5110 24 -3972 -3888 -3804 n/a U5a1f1 n/a molar 2 1240K half mixed haploid 22.095 413694 0.4878 0.303 0.307595 0.0215 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Igor Bruyakov, Igor Manzura 2023_Penske_EarlyContact n/a +UBK006 M USV USV006 n/a n/a n/a Grave 1, Skeleton 4 Ukraine Odessa Oblast Usatove-Bolšoj Kujalnik 46.52603 30.63042 C14 MAMS-48806 4853 23 -3701 -3618 -3535 n/a U4a2 I2a1a tooth_46 3 1240K half mixed haploid 26.124 504626 0.6072 0.3232 0.005409 0.00541 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Igor Bruyakov, Igor Manzura 2023_Penske_EarlyContact n/a +USV004 F USV USV004 n/a n/a n/a Kurgan II - 9, Grave 4 Ukraine Odessa Oblast Usatove-Bolšoj Kujalnik 46.52603 30.63042 C14 MAMS-48808 4914 26 -3764 -3703 -3641 n/a n/a n/a petrous 2 1240K half mixed haploid 22.487 428685 0.4841 0.1907 0.243776 0.0193 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Igor Bruyakov, Igor Manzura 2023_Penske_EarlyContact n/a +USV005 F USV USV005 n/a n/a n/a Kurgan II-6, Grave 4 Ukraine Odessa Oblast Usatove-Bolšoj Kujalnik 46.52603 30.63042 C14 MAMS-48809 4819 26 -3646 -3588 -3529 n/a X2b n/a petrous;molar 3 1240K half mixed haploid 33.985 910310 1.9788 0.1756 0.293157 0.00835 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Igor Bruyakov, Igor Manzura 2023_Penske_EarlyContact n/a diff --git a/2023_Penske_EarlyContact/POSEIDON.yml b/2023_Penske_EarlyContact/POSEIDON.yml index 36138e3f..5902dff3 100644 --- a/2023_Penske_EarlyContact/POSEIDON.yml +++ b/2023_Penske_EarlyContact/POSEIDON.yml @@ -18,6 +18,6 @@ genotypeData: indFileChkSum: b0459c7047f59a20fc8a19d6001ff5fd snpSet: 1240K jannoFile: 2023_Penske_EarlyContact.janno -jannoFileChkSum: 7836f898b009aee8ad9aeacb419edb2b +jannoFileChkSum: e1d8a0b49504cd138b2a771d2171e7c4 bibFile: 2023_Penske_EarlyContact.bib bibFileChkSum: 58a77722660c24a060ab5bae008fb2b5 From 3a190a78a79569e34f65c2def8a3638ab4b5eaba Mon Sep 17 00:00:00 2001 From: AyGhal Date: Thu, 23 Nov 2023 15:42:14 +0100 Subject: [PATCH 3/5] Package for ancient individuals from Meso/Neo Sicily prepared by He Yu. --- .../2022_Yu_VanDeLoosdrecht_Sicily.bed | 3 +++ .../2022_Yu_VanDeLoosdrecht_Sicily.bib | 14 ++++++++++++ .../2022_Yu_VanDeLoosdrecht_Sicily.bim | 3 +++ .../2022_Yu_VanDeLoosdrecht_Sicily.fam | 20 +++++++++++++++++ .../2022_Yu_VanDeLoosdrecht_Sicily.janno | 21 ++++++++++++++++++ 2022_Yu_VanDeLoosdrecht_Sicily/POSEIDON.yml | 22 +++++++++++++++++++ 6 files changed, 83 insertions(+) create mode 100644 2022_Yu_VanDeLoosdrecht_Sicily/2022_Yu_VanDeLoosdrecht_Sicily.bed create mode 100644 2022_Yu_VanDeLoosdrecht_Sicily/2022_Yu_VanDeLoosdrecht_Sicily.bib create mode 100644 2022_Yu_VanDeLoosdrecht_Sicily/2022_Yu_VanDeLoosdrecht_Sicily.bim create mode 100644 2022_Yu_VanDeLoosdrecht_Sicily/2022_Yu_VanDeLoosdrecht_Sicily.fam create mode 100644 2022_Yu_VanDeLoosdrecht_Sicily/2022_Yu_VanDeLoosdrecht_Sicily.janno create mode 100644 2022_Yu_VanDeLoosdrecht_Sicily/POSEIDON.yml diff --git a/2022_Yu_VanDeLoosdrecht_Sicily/2022_Yu_VanDeLoosdrecht_Sicily.bed b/2022_Yu_VanDeLoosdrecht_Sicily/2022_Yu_VanDeLoosdrecht_Sicily.bed new file mode 100644 index 00000000..20725ae7 --- /dev/null +++ b/2022_Yu_VanDeLoosdrecht_Sicily/2022_Yu_VanDeLoosdrecht_Sicily.bed @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:6bade758ba72a25c60f32a4f8f3fbb9cc1ac38a3e40fe2dc350d3a7c1ae62837 +size 4343778 diff --git a/2022_Yu_VanDeLoosdrecht_Sicily/2022_Yu_VanDeLoosdrecht_Sicily.bib b/2022_Yu_VanDeLoosdrecht_Sicily/2022_Yu_VanDeLoosdrecht_Sicily.bib new file mode 100644 index 00000000..0627c1bd --- /dev/null +++ b/2022_Yu_VanDeLoosdrecht_Sicily/2022_Yu_VanDeLoosdrecht_Sicily.bib @@ -0,0 +1,14 @@ +@article{YuiScience2022, + title = {Genomic and dietary discontinuities during the Mesolithic and Neolithic in Sicily}, + volume = {25}, + ISSN = {2589-0042}, + url = {http://dx.doi.org/10.1016/j.isci.2022.104244}, + DOI = {10.1016/j.isci.2022.104244}, + number = {5}, + journal = {iScience}, + publisher = {Elsevier BV}, + author = {Yu, He and van de Loosdrecht, Marieke S. and Mannino, Marcello A. and Talamo, Sahra and Rohrlach, Adam B. and Childebayeva, Ainash and Villalba-Mouco, Vanessa and Aron, Franziska and Brandt, Guido and Burri, Marta and Freund, C\"{a}cilia and Radzeviciute, Rita and Stahl, Raphaela and Wissgott, Antje and Fewlass, Helen and Tagliacozzo, Antonio and Piperno, Marcello and Tusa, Sebastiano and Collina, Carmine and Schimmenti, Vittoria and Di Salvo, Rosaria and Pr\"{u}fer, Kay and Posth, Cosimo and Hublin, Jean-Jacques and Gronenborn, Detlef and Binder, Didier and Jeong, Choongwon and Haak, Wolfgang and Krause, Johannes}, + year = {2022}, + month = may, + pages = {104244} +}i diff --git a/2022_Yu_VanDeLoosdrecht_Sicily/2022_Yu_VanDeLoosdrecht_Sicily.bim b/2022_Yu_VanDeLoosdrecht_Sicily/2022_Yu_VanDeLoosdrecht_Sicily.bim new file mode 100644 index 00000000..78dd5846 --- /dev/null +++ b/2022_Yu_VanDeLoosdrecht_Sicily/2022_Yu_VanDeLoosdrecht_Sicily.bim @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:a2c6797131580548742c3cdc7f3d2e80f832f85159304d6bcd08419cd20c5cc6 +size 30498959 diff --git a/2022_Yu_VanDeLoosdrecht_Sicily/2022_Yu_VanDeLoosdrecht_Sicily.fam b/2022_Yu_VanDeLoosdrecht_Sicily/2022_Yu_VanDeLoosdrecht_Sicily.fam new file mode 100644 index 00000000..2f072406 --- /dev/null +++ b/2022_Yu_VanDeLoosdrecht_Sicily/2022_Yu_VanDeLoosdrecht_Sicily.fam @@ -0,0 +1,20 @@ +Sicily_EM UZZ05054 0 0 2 0 +Sicily_LM UZZ04446 0 0 2 0 +Uzzo_exclude UZZ026.cont 0 0 1 0 +Sicily_EN UZZ033 0 0 1 0 +Sicily_EN UZZ034 0 0 2 0 +Sicily_LM UZZ040 0 0 1 0 +Uzzo_EBA UZZ057 0 0 1 0 +Sicily_EN UZZ061 0 0 1 0 +Sicily_LM UZZ069 0 0 2 0 +Sicily_LM UZZ071 0 0 2 0 +Sicily_EN UZZ074 0 0 2 0 +Sicily_EN UZZ075 0 0 2 0 +Sicily_EN UZZ077 0 0 2 0 +Sicily_LM UZZ079 0 0 2 0 +Sicily_LM UZZ080 0 0 2 0 +Sicily_LM UZZ081 0 0 1 0 +Sicily_LM UZZ082 0 0 2 0 +Sicily_EN UZZ087 0 0 2 0 +Sicily_LM UZZ088 0 0 2 0 +Sicily_LM UZZ096 0 0 2 0 diff --git a/2022_Yu_VanDeLoosdrecht_Sicily/2022_Yu_VanDeLoosdrecht_Sicily.janno b/2022_Yu_VanDeLoosdrecht_Sicily/2022_Yu_VanDeLoosdrecht_Sicily.janno new file mode 100644 index 00000000..520cda66 --- /dev/null +++ b/2022_Yu_VanDeLoosdrecht_Sicily/2022_Yu_VanDeLoosdrecht_Sicily.janno @@ -0,0 +1,21 @@ +Poseidon_ID Genetic_Sex Group_Name Alternative_IDs Relation_To Relation_Degree Country Country_ISO Location Site Latitude Longitude Date_Type Date_C14_Labnr Date_C14_Uncal_BP Date_C14_Uncal_BP_Err Date_BC_AD_Start Date_BC_AD_Median Date_BC_AD_Stop MT_Haplogroup Y_Haplogroup Source_Tissue Nr_Libraries Capture_Type UDG Library_Built Genotype_Ploidy Nr_SNPs Coverage_on_Target_SNPs Damage Contamination Contamination_Err Contamination_Meas Genetic_Source_Accession_IDs Primary_Contact Publication +UZZ05054 F Sicily_EM R-EVA 1935 n/a n/a Italy IT Sicily Grotta dell'Uzzo 38.11 12.79 C14 MAMS-40710 9436 29 -8800 -8710 -8620 U2'3'4'7'8'9 n/a tooth 13 1240K mixed mixed haploid 704825 3.718 39.2 0.01;0.03 0.01;0.01 Schmutzi;Contamix v1.0.10 PRJEB50762 He Yu YuiScience2022 +UZZ04446 F Sicily_LM R-EVA 1930 n/a n/a Italy IT Sicily Grotta dell'Uzzo 38.11 12.79 C14 MAMS-40709 7713 26 -6480 -6330 -6180 U5b2b n/a tooth;bone_mandible 5 1240K minus ss haploid 484393 1.229 34.8 0.02;0.04 0.01;0.01 Schmutzi;Contamix v1.0.10 PRJEB50762 He Yu YuiScience2022 +UZZ026.cont M Uzzo_exclude R-EVA 1918 n/a n/a Italy IT Sicily Grotta dell'Uzzo 38.11 12.79 C14 MAMS-40708 9436 36 -9040 -8830 -8620 n/a n/a bone_cranial 1 1240K minus ss haploid 52636 0.075 21.1 0.02;0.15 0.01;0.05 Schmutzi;Contamix v1.0.10 PRJEB50762 He Yu YuiScience2022 +UZZ033 M Sicily_EN n/a n/a n/a Italy IT Sicily Grotta dell'Uzzo 38.11 12.79 contextual n/a n/a n/a -5380 -5295 -5210 U8b1b1 H2 tooth 1 1240K minus ss haploid 346153 0.721 28.4 0.01;0.00;0.03 0.01;0.00;0.01 Schmutzi;Contamix v1.0.10;ANGSD v0.910 PRJEB50762 He Yu YuiScience2022 +UZZ034 F Sicily_EN R-EVA 2879 n/a n/a Italy IT Sicily Grotta dell'Uzzo 38.11 12.79 C14 MAMS-40725 6351 24 -5380 -5295 -5210 U8b1b1 n/a tooth 1 1240K minus ss haploid 255340 0.535 27.2 0.01;0.04 0.01;0.01 Schmutzi;Contamix v1.0.10 PRJEB50762 He Yu YuiScience2022 +UZZ040 M Sicily_LM R-EVA 2880 n/a n/a Italy IT Sicily Grotta dell'Uzzo 38.11 12.79 C14 MAMS-40726 7471 26 -6420 -6330 -6240 U4a2f I2a1b tooth 1 1240K minus ss haploid 242290 0.558 45.9 0.01;0.02;0.04 0.01;0.00;0.01 Schmutzi;Contamix v1.0.10;ANGSD v0.910 PRJEB50762 He Yu YuiScience2022 +UZZ057 M Uzzo_EBA R-EVA 2883 n/a n/a Italy IT Sicily Grotta dell'Uzzo 38.11 12.79 C14 MAMS-40727 3708 19 -2200 -2110 -2020 n/a R1b1a1b1a1a2 bone_phalanx 3 1240K minus mixed haploid 170167 0.331 23.3 0.02;0.00;0.01 0.01;0.00;0.01 Schmutzi;Contamix v1.0.10;ANGSD v0.910 PRJEB50762 He Yu YuiScience2022 +UZZ061 M Sicily_EN R-EVA 3521 n/a n/a Italy IT Sicily Grotta dell'Uzzo 38.11 12.79 C14 MAMS-48211 5923 25 -4880 -4795 -4710 K1a2 C1a2b1 bone_phalanx 3 1240K minus mixed haploid 656124 3.653 28.6 0.01;0.03;0.02 0.01;0.02;0.00 Schmutzi;Contamix v1.0.10;ANGSD v0.910 PRJEB50762 He Yu YuiScience2022 +UZZ069 F Sicily_LM R-EVA 1948 n/a n/a Italy IT Sicily Grotta dell'Uzzo 38.11 12.79 C14 MAMS-40711 7848 26 -6590 -6415 -6240 U5b2b n/a bone_mandible 5 1240K minus mixed haploid 620607 2.822 33.8 0.03;0.07 0.01;0.03 Schmutzi;Contamix v1.0.10 PRJEB50762 He Yu YuiScience2022 +UZZ071 F Sicily_LM R-EVA 3522 n/a n/a Italy IT Sicily Grotta dell'Uzzo 38.11 12.79 C14 MAMS-48212 7051 27 -6010 -5925 -5840 U5a2+16294 n/a tooth 3 1240K mixed mixed haploid 519594 1.598 36.8 0.01;0.01 0.01;0.01 Schmutzi;Contamix v1.0.10 PRJEB50762 He Yu YuiScience2022 +UZZ074 F Sicily_EN R-EVA 1953 n/a n/a Italy IT Sicily Grotta dell'Uzzo 38.11 12.79 C14 MAMS-40716 6310 23 -5330 -5270 -5210 N1a1a1 n/a bone_femur 1 1240K minus ss haploid 179591 0.375 46.8 0.02;0.02 0.01;0.02 Schmutzi;Contamix v1.0.10 PRJEB50762 He Yu YuiScience2022 +UZZ075 F Sicily_EN R-EVA 1954 n/a n/a Italy IT Sicily Grotta dell'Uzzo 38.11 12.79 C14 MAMS-40717 6310 23 -5330 -5270 -5210 J1c5 n/a bone_petrous 2 1240K minus ss haploid 756409 5.973 41.3 0.01;0.01 0.01;0.01 Schmutzi;Contamix v1.0.10 PRJEB50762 He Yu YuiScience2022 +UZZ077 F Sicily_EN R-EVA 3523 n/a n/a Italy IT Sicily Grotta dell'Uzzo 38.11 12.79 C14 MAMS-48213 6446 25 -5480 -5420 -5360 H n/a tooth 1 1240K minus ss haploid 155557 0.273 44.5 0.01;0.00 0.01;0.00 Schmutzi;Contamix v1.0.10 PRJEB50762 He Yu YuiScience2022 +UZZ079 F Sicily_LM R-EVA 1957 UZZ081 first Italy IT Sicily Grotta dell'Uzzo 38.11 12.79 C14 MAMS-40719 7809 26 -6570 -6390 -6210 U5b3(d) n/a bone_petrous 2 1240K minus ss haploid 750625 7.271 31.8 0.01;0.02 0.01;0.01 Schmutzi;Contamix v1.0.10 PRJEB50762 He Yu YuiScience2022 +UZZ080 F Sicily_LM R-EVA 1958 n/a n/a Italy IT Sicily Grotta dell'Uzzo 38.11 12.79 C14 MAMS-40720 7809 26 -6570 -6390 -6210 U5b2b1a n/a bone_petrous 3 1240K mixed mixed haploid 796174 9.392 35.8 0.02;0.04 0.01;0.01 Schmutzi;Contamix v1.0.10 PRJEB50762 He Yu YuiScience2022 +UZZ081 M Sicily_LM R-EVA 1959 UZZ079 first Italy IT Sicily Grotta dell'Uzzo 38.11 12.79 C14 MAMS-40721 7807 26 -6570 -6400 -6230 U5b3(d) I2a1b2 bone_petrous 2 1240K mixed mixed haploid 283872 0.675 36 0.01;0.01;0.04 0.01;0.01;0.01 Schmutzi;Contamix v1.0.10;ANGSD v0.910 PRJEB50762 He Yu YuiScience2022 +UZZ082 F Sicily_LM R-EVA 1960 n/a n/a Italy IT Sicily Grotta dell'Uzzo 38.11 12.79 C14 MAMS-40722 7809 26 -6700 -6635 -6570 U5a1 n/a bone_petrous 2 1240K mixed mixed haploid 720058 4.932 42.8 0.01;0.02 0.01;0.00 Schmutzi;Contamix v1.0.10 PRJEB50762 He Yu YuiScience2022 +UZZ087 F Sicily_EN R-EVA 1964 n/a n/a Italy IT Sicily Grotta dell'Uzzo 38.11 12.79 C14 MAMS-40723 6286 24 -5320 -5265 -5210 n/a n/a bone_humerus 1 1240K minus ss haploid 53352 0.087 52.3 0.03 0.01 Schmutzi PRJEB50762 He Yu YuiScience2022 +UZZ088 F Sicily_LM R-EVA 1965 n/a n/a Italy IT Sicily Grotta dell'Uzzo 38.11 12.79 C14 MAMS-40712 7036 25 -6000 -5920 -5840 U5b3(d) n/a bone_phalanx 1 1240K minus ss haploid 556469 1.978 40.7 0.02;0.04 0.01;0.01 Schmutzi;Contamix v1.0.10 PRJEB50762 He Yu YuiScience2022 +UZZ096 F Sicily_LM n/a n/a n/a Italy IT Sicily Grotta dell'Uzzo 38.11 12.79 contextual n/a n/a n/a -8800 -8300 -7800 U2'3'4'7'8'9 n/a tooth_M2 upper right 1 1240K minus ss haploid 67911 0.109 41.7 0.02;0.07 0.01;0.07 Schmutzi;Contamix v1.0.10 PRJEB50762 He Yu YuiScience2022 diff --git a/2022_Yu_VanDeLoosdrecht_Sicily/POSEIDON.yml b/2022_Yu_VanDeLoosdrecht_Sicily/POSEIDON.yml new file mode 100644 index 00000000..ab0107d3 --- /dev/null +++ b/2022_Yu_VanDeLoosdrecht_Sicily/POSEIDON.yml @@ -0,0 +1,22 @@ +poseidonVersion: 2.7.1 +title: 2022_Yu_VanDeLoosdrecht_Sicily +description: Genotypes of ancient individuals from Grotta dell'Uzzo, excluding SNP sites on CpG islands +contributor: +- name: He Yu + email: yuhe@pku.edu.cn + orcid: 0000-0003-1323-4730 +packageVersion: 1.0.0 +lastModified: 2023-11-23 +genotypeData: + format: PLINK + genoFile: 2022_Yu_VanDeLoosdrecht_Sicily.bed + genoFileChkSum: f2af7b655647dfaec0693fa4261c87b1 + snpFile: 2022_Yu_VanDeLoosdrecht_Sicily.bim + snpFileChkSum: edd19822c7bbd57beed401227449dd4b + indFile: 2022_Yu_VanDeLoosdrecht_Sicily.fam + indFileChkSum: 037de6f64408600714bd1bf1f84ccbb0 + snpSet: Other +jannoFile: 2022_Yu_VanDeLoosdrecht_Sicily.janno +jannoFileChkSum: d116eb31c178751bc745c5bd24a58faa +bibFile: 2022_Yu_VanDeLoosdrecht_Sicily.bib +bibFileChkSum: bd24fa182e58cc23b9b6e7d171a9a697 From 7704d3dc6cace1f670a4193e158fbb0f563dfa47 Mon Sep 17 00:00:00 2001 From: AyGhal Date: Fri, 24 Nov 2023 11:44:24 +0100 Subject: [PATCH 4/5] removed 2022_Yu_VanDeLoosdrecht_Sicily --- .../2022_Yu_VanDeLoosdrecht_Sicily.bed | 3 --- .../2022_Yu_VanDeLoosdrecht_Sicily.bib | 14 ------------ .../2022_Yu_VanDeLoosdrecht_Sicily.bim | 3 --- .../2022_Yu_VanDeLoosdrecht_Sicily.fam | 20 ----------------- .../2022_Yu_VanDeLoosdrecht_Sicily.janno | 21 ------------------ 2022_Yu_VanDeLoosdrecht_Sicily/POSEIDON.yml | 22 ------------------- 6 files changed, 83 deletions(-) delete mode 100644 2022_Yu_VanDeLoosdrecht_Sicily/2022_Yu_VanDeLoosdrecht_Sicily.bed delete mode 100644 2022_Yu_VanDeLoosdrecht_Sicily/2022_Yu_VanDeLoosdrecht_Sicily.bib delete mode 100644 2022_Yu_VanDeLoosdrecht_Sicily/2022_Yu_VanDeLoosdrecht_Sicily.bim delete mode 100644 2022_Yu_VanDeLoosdrecht_Sicily/2022_Yu_VanDeLoosdrecht_Sicily.fam delete mode 100644 2022_Yu_VanDeLoosdrecht_Sicily/2022_Yu_VanDeLoosdrecht_Sicily.janno delete mode 100644 2022_Yu_VanDeLoosdrecht_Sicily/POSEIDON.yml diff --git a/2022_Yu_VanDeLoosdrecht_Sicily/2022_Yu_VanDeLoosdrecht_Sicily.bed b/2022_Yu_VanDeLoosdrecht_Sicily/2022_Yu_VanDeLoosdrecht_Sicily.bed deleted file mode 100644 index 20725ae7..00000000 --- a/2022_Yu_VanDeLoosdrecht_Sicily/2022_Yu_VanDeLoosdrecht_Sicily.bed +++ /dev/null @@ -1,3 +0,0 @@ -version https://git-lfs.github.com/spec/v1 -oid sha256:6bade758ba72a25c60f32a4f8f3fbb9cc1ac38a3e40fe2dc350d3a7c1ae62837 -size 4343778 diff --git a/2022_Yu_VanDeLoosdrecht_Sicily/2022_Yu_VanDeLoosdrecht_Sicily.bib b/2022_Yu_VanDeLoosdrecht_Sicily/2022_Yu_VanDeLoosdrecht_Sicily.bib deleted file mode 100644 index 0627c1bd..00000000 --- a/2022_Yu_VanDeLoosdrecht_Sicily/2022_Yu_VanDeLoosdrecht_Sicily.bib +++ /dev/null @@ -1,14 +0,0 @@ -@article{YuiScience2022, - title = {Genomic and dietary discontinuities during the Mesolithic and Neolithic in Sicily}, - volume = {25}, - ISSN = {2589-0042}, - url = {http://dx.doi.org/10.1016/j.isci.2022.104244}, - DOI = {10.1016/j.isci.2022.104244}, - number = {5}, - journal = {iScience}, - publisher = {Elsevier BV}, - author = {Yu, He and van de Loosdrecht, Marieke S. and Mannino, Marcello A. and Talamo, Sahra and Rohrlach, Adam B. and Childebayeva, Ainash and Villalba-Mouco, Vanessa and Aron, Franziska and Brandt, Guido and Burri, Marta and Freund, C\"{a}cilia and Radzeviciute, Rita and Stahl, Raphaela and Wissgott, Antje and Fewlass, Helen and Tagliacozzo, Antonio and Piperno, Marcello and Tusa, Sebastiano and Collina, Carmine and Schimmenti, Vittoria and Di Salvo, Rosaria and Pr\"{u}fer, Kay and Posth, Cosimo and Hublin, Jean-Jacques and Gronenborn, Detlef and Binder, Didier and Jeong, Choongwon and Haak, Wolfgang and Krause, Johannes}, - year = {2022}, - month = may, - pages = {104244} -}i diff --git a/2022_Yu_VanDeLoosdrecht_Sicily/2022_Yu_VanDeLoosdrecht_Sicily.bim b/2022_Yu_VanDeLoosdrecht_Sicily/2022_Yu_VanDeLoosdrecht_Sicily.bim deleted file mode 100644 index 78dd5846..00000000 --- a/2022_Yu_VanDeLoosdrecht_Sicily/2022_Yu_VanDeLoosdrecht_Sicily.bim +++ /dev/null @@ -1,3 +0,0 @@ -version https://git-lfs.github.com/spec/v1 -oid sha256:a2c6797131580548742c3cdc7f3d2e80f832f85159304d6bcd08419cd20c5cc6 -size 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file mode 100644 index 520cda66..00000000 --- a/2022_Yu_VanDeLoosdrecht_Sicily/2022_Yu_VanDeLoosdrecht_Sicily.janno +++ /dev/null @@ -1,21 +0,0 @@ -Poseidon_ID Genetic_Sex Group_Name Alternative_IDs Relation_To Relation_Degree Country Country_ISO Location Site Latitude Longitude Date_Type Date_C14_Labnr Date_C14_Uncal_BP Date_C14_Uncal_BP_Err Date_BC_AD_Start Date_BC_AD_Median Date_BC_AD_Stop MT_Haplogroup Y_Haplogroup Source_Tissue Nr_Libraries Capture_Type UDG Library_Built Genotype_Ploidy Nr_SNPs Coverage_on_Target_SNPs Damage Contamination Contamination_Err Contamination_Meas Genetic_Source_Accession_IDs Primary_Contact Publication -UZZ05054 F Sicily_EM R-EVA 1935 n/a n/a Italy IT Sicily Grotta dell'Uzzo 38.11 12.79 C14 MAMS-40710 9436 29 -8800 -8710 -8620 U2'3'4'7'8'9 n/a tooth 13 1240K mixed mixed haploid 704825 3.718 39.2 0.01;0.03 0.01;0.01 Schmutzi;Contamix v1.0.10 PRJEB50762 He Yu YuiScience2022 -UZZ04446 F Sicily_LM R-EVA 1930 n/a n/a Italy IT Sicily Grotta dell'Uzzo 38.11 12.79 C14 MAMS-40709 7713 26 -6480 -6330 -6180 U5b2b n/a tooth;bone_mandible 5 1240K minus ss haploid 484393 1.229 34.8 0.02;0.04 0.01;0.01 Schmutzi;Contamix v1.0.10 PRJEB50762 He Yu YuiScience2022 -UZZ026.cont M Uzzo_exclude R-EVA 1918 n/a n/a Italy IT Sicily Grotta dell'Uzzo 38.11 12.79 C14 MAMS-40708 9436 36 -9040 -8830 -8620 n/a n/a bone_cranial 1 1240K minus ss haploid 52636 0.075 21.1 0.02;0.15 0.01;0.05 Schmutzi;Contamix v1.0.10 PRJEB50762 He Yu YuiScience2022 -UZZ033 M Sicily_EN n/a n/a n/a Italy IT Sicily Grotta dell'Uzzo 38.11 12.79 contextual n/a n/a n/a -5380 -5295 -5210 U8b1b1 H2 tooth 1 1240K minus ss haploid 346153 0.721 28.4 0.01;0.00;0.03 0.01;0.00;0.01 Schmutzi;Contamix v1.0.10;ANGSD v0.910 PRJEB50762 He Yu YuiScience2022 -UZZ034 F Sicily_EN R-EVA 2879 n/a n/a Italy IT Sicily Grotta dell'Uzzo 38.11 12.79 C14 MAMS-40725 6351 24 -5380 -5295 -5210 U8b1b1 n/a tooth 1 1240K minus ss haploid 255340 0.535 27.2 0.01;0.04 0.01;0.01 Schmutzi;Contamix v1.0.10 PRJEB50762 He Yu 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7848 26 -6590 -6415 -6240 U5b2b n/a bone_mandible 5 1240K minus mixed haploid 620607 2.822 33.8 0.03;0.07 0.01;0.03 Schmutzi;Contamix v1.0.10 PRJEB50762 He Yu YuiScience2022 -UZZ071 F Sicily_LM R-EVA 3522 n/a n/a Italy IT Sicily Grotta dell'Uzzo 38.11 12.79 C14 MAMS-48212 7051 27 -6010 -5925 -5840 U5a2+16294 n/a tooth 3 1240K mixed mixed haploid 519594 1.598 36.8 0.01;0.01 0.01;0.01 Schmutzi;Contamix v1.0.10 PRJEB50762 He Yu YuiScience2022 -UZZ074 F Sicily_EN R-EVA 1953 n/a n/a Italy IT Sicily Grotta dell'Uzzo 38.11 12.79 C14 MAMS-40716 6310 23 -5330 -5270 -5210 N1a1a1 n/a bone_femur 1 1240K minus ss haploid 179591 0.375 46.8 0.02;0.02 0.01;0.02 Schmutzi;Contamix v1.0.10 PRJEB50762 He Yu YuiScience2022 -UZZ075 F Sicily_EN R-EVA 1954 n/a n/a Italy IT Sicily Grotta dell'Uzzo 38.11 12.79 C14 MAMS-40717 6310 23 -5330 -5270 -5210 J1c5 n/a bone_petrous 2 1240K minus ss haploid 756409 5.973 41.3 0.01;0.01 0.01;0.01 Schmutzi;Contamix v1.0.10 PRJEB50762 He Yu YuiScience2022 -UZZ077 F Sicily_EN R-EVA 3523 n/a n/a Italy IT Sicily Grotta dell'Uzzo 38.11 12.79 C14 MAMS-48213 6446 25 -5480 -5420 -5360 H n/a tooth 1 1240K minus ss haploid 155557 0.273 44.5 0.01;0.00 0.01;0.00 Schmutzi;Contamix v1.0.10 PRJEB50762 He Yu YuiScience2022 -UZZ079 F Sicily_LM R-EVA 1957 UZZ081 first Italy IT Sicily Grotta dell'Uzzo 38.11 12.79 C14 MAMS-40719 7809 26 -6570 -6390 -6210 U5b3(d) n/a bone_petrous 2 1240K minus ss haploid 750625 7.271 31.8 0.01;0.02 0.01;0.01 Schmutzi;Contamix v1.0.10 PRJEB50762 He Yu YuiScience2022 -UZZ080 F Sicily_LM R-EVA 1958 n/a n/a Italy IT Sicily Grotta dell'Uzzo 38.11 12.79 C14 MAMS-40720 7809 26 -6570 -6390 -6210 U5b2b1a n/a bone_petrous 3 1240K mixed mixed haploid 796174 9.392 35.8 0.02;0.04 0.01;0.01 Schmutzi;Contamix v1.0.10 PRJEB50762 He Yu YuiScience2022 -UZZ081 M Sicily_LM R-EVA 1959 UZZ079 first Italy IT Sicily Grotta dell'Uzzo 38.11 12.79 C14 MAMS-40721 7807 26 -6570 -6400 -6230 U5b3(d) I2a1b2 bone_petrous 2 1240K mixed mixed haploid 283872 0.675 36 0.01;0.01;0.04 0.01;0.01;0.01 Schmutzi;Contamix v1.0.10;ANGSD v0.910 PRJEB50762 He Yu YuiScience2022 -UZZ082 F Sicily_LM R-EVA 1960 n/a n/a Italy IT Sicily Grotta dell'Uzzo 38.11 12.79 C14 MAMS-40722 7809 26 -6700 -6635 -6570 U5a1 n/a bone_petrous 2 1240K mixed mixed haploid 720058 4.932 42.8 0.01;0.02 0.01;0.00 Schmutzi;Contamix v1.0.10 PRJEB50762 He Yu YuiScience2022 -UZZ087 F Sicily_EN R-EVA 1964 n/a n/a Italy IT Sicily Grotta dell'Uzzo 38.11 12.79 C14 MAMS-40723 6286 24 -5320 -5265 -5210 n/a n/a bone_humerus 1 1240K minus ss haploid 53352 0.087 52.3 0.03 0.01 Schmutzi PRJEB50762 He Yu YuiScience2022 -UZZ088 F Sicily_LM R-EVA 1965 n/a n/a Italy IT Sicily Grotta dell'Uzzo 38.11 12.79 C14 MAMS-40712 7036 25 -6000 -5920 -5840 U5b3(d) n/a bone_phalanx 1 1240K minus ss haploid 556469 1.978 40.7 0.02;0.04 0.01;0.01 Schmutzi;Contamix v1.0.10 PRJEB50762 He Yu YuiScience2022 -UZZ096 F Sicily_LM n/a n/a n/a Italy IT Sicily Grotta dell'Uzzo 38.11 12.79 contextual n/a n/a n/a -8800 -8300 -7800 U2'3'4'7'8'9 n/a tooth_M2 upper right 1 1240K minus ss haploid 67911 0.109 41.7 0.02;0.07 0.01;0.07 Schmutzi;Contamix v1.0.10 PRJEB50762 He Yu YuiScience2022 diff --git a/2022_Yu_VanDeLoosdrecht_Sicily/POSEIDON.yml b/2022_Yu_VanDeLoosdrecht_Sicily/POSEIDON.yml deleted file mode 100644 index ab0107d3..00000000 --- a/2022_Yu_VanDeLoosdrecht_Sicily/POSEIDON.yml +++ /dev/null @@ -1,22 +0,0 @@ -poseidonVersion: 2.7.1 -title: 2022_Yu_VanDeLoosdrecht_Sicily -description: Genotypes of ancient individuals from Grotta dell'Uzzo, excluding SNP sites on CpG islands -contributor: -- name: He Yu - email: yuhe@pku.edu.cn - orcid: 0000-0003-1323-4730 -packageVersion: 1.0.0 -lastModified: 2023-11-23 -genotypeData: - format: PLINK - genoFile: 2022_Yu_VanDeLoosdrecht_Sicily.bed - genoFileChkSum: f2af7b655647dfaec0693fa4261c87b1 - snpFile: 2022_Yu_VanDeLoosdrecht_Sicily.bim - snpFileChkSum: edd19822c7bbd57beed401227449dd4b - indFile: 2022_Yu_VanDeLoosdrecht_Sicily.fam - indFileChkSum: 037de6f64408600714bd1bf1f84ccbb0 - snpSet: Other -jannoFile: 2022_Yu_VanDeLoosdrecht_Sicily.janno -jannoFileChkSum: d116eb31c178751bc745c5bd24a58faa -bibFile: 2022_Yu_VanDeLoosdrecht_Sicily.bib -bibFileChkSum: bd24fa182e58cc23b9b6e7d171a9a697 From a3f12b9fe579e52bdf49535f9e44538760b1c502 Mon Sep 17 00:00:00 2001 From: AyGhal Date: Fri, 24 Nov 2023 12:06:13 +0100 Subject: [PATCH 5/5] fixed typos and Date_Type. --- .../2023_Penske_EarlyContact.janno | 10 +++++----- 2023_Penske_EarlyContact/POSEIDON.yml | 2 +- 2 files changed, 6 insertions(+), 6 deletions(-) diff --git a/2023_Penske_EarlyContact/2023_Penske_EarlyContact.janno b/2023_Penske_EarlyContact/2023_Penske_EarlyContact.janno index c9be9646..54ac8d04 100644 --- a/2023_Penske_EarlyContact/2023_Penske_EarlyContact.janno +++ b/2023_Penske_EarlyContact/2023_Penske_EarlyContact.janno @@ -31,9 +31,9 @@ YUN001 F YUN_CA n/a n/a n/a n/a Grave 110 Bulgaria Pazardzhik Yunatsite 42.23 24 YUN003 F YUN_CA n/a YUN049 identical n/a Grave 69 Bulgaria Pazardzhik Yunatsite 42.23 24.26 n/a n/a n/a n/a n/a n/a n/a n/a U2+152 n/a petrous;tooth_47 3 1240K half ds haploid 13.802 931532 1.5303 0.1218 n/a n/a n/a PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a YUN005 F YUN_CA n/a n/a n/a n/a Grave 104 Bulgaria Pazardzhik Yunatsite 42.23 24.26 C14 MAMS-45478 5570 24 -4453 -4404 -4356 n/a U4a2 n/a petrous;tooth_47 2 1240K half ds haploid 6.447 421904 0.5265 0.1255 n/a n/a n/a PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a YUN006 F YUN_CA n/a YUN031 identical n/a Skeleton 127 Bulgaria Pazardzhik Yunatsite 42.23 24.26 C14 MAMS-45479 5589 26 -4462 -4409 -4356 n/a K1a n/a petrous 2 1240K half ds haploid 16.388 654756 1.8984 0.1197 n/a n/a n/a PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a -YUN007 M YUN_CA n/a n/a n/a n/a Grave 87 Bulgaria Pazardzhik Yunatsite 42.23 24.26 C14 MAMS-45480 5551 27 -4451 -4398 -4346 n/a H J2a1a2b2a2~ petrous;tooh_46 2 1240K half ds haploid 10.289 714271 1.2191 0.1022 0.002557 0.00282 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a +YUN007 M YUN_CA n/a n/a n/a n/a Grave 87 Bulgaria Pazardzhik Yunatsite 42.23 24.26 C14 MAMS-45480 5551 27 -4451 -4398 -4346 n/a H J2a1a2b2a2~ petrous;tooth_46 2 1240K half ds haploid 10.289 714271 1.2191 0.1022 0.002557 0.00282 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a YUN009 M YUN_CA n/a n/a n/a n/a Grave 102 Bulgaria Pazardzhik Yunatsite 42.23 24.26 C14 MAMS-45482 5548 28 -4450 -4398 -4346 n/a H62 G2a2b2b1a2 petrous 1 1240K half ds haploid 7.323 593481 0.8752 0.0801 0.004825 0.00494 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a -YUN012 F YUN_CA n/a YUN015 first Dauther of YUN015 Grave 23 Bulgaria Pazardzhik Yunatsite 42.23 24.26 n/a n/a n/a n/a n/a n/a n/a n/a X2b n/a petrous 1 1240K half ds haploid 13.153 751668 1.4107 0.0989 n/a n/a n/a PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a +YUN012 F YUN_CA n/a YUN015 first Daughter of YUN015 Grave 23 Bulgaria Pazardzhik Yunatsite 42.23 24.26 n/a n/a n/a n/a n/a n/a n/a n/a X2b n/a petrous 1 1240K half ds haploid 13.153 751668 1.4107 0.0989 n/a n/a n/a PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a YUN013 M YUN_CA n/a n/a n/a n/a Grave 77/81 Bulgaria Pazardzhik Yunatsite 42.23 24.26 C14 MAMS-45483 5624 26 -4517 -4442 -4367 n/a H7 C1a2b petrous 1 1240K half ds haploid 8.63 533002 0.7021 0.1358 0.009945 0.00771 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a YUN014 F YUN_CA n/a n/a n/a n/a Grave 67 Bulgaria Pazardzhik Yunatsite 42.23 24.26 C14 MAMS-45484 5577 29 -4459 -4406 -4354 n/a T2b23 n/a petrous 1 1240K half ds haploid 7.722 474178 0.5581 0.1208 n/a n/a n/a PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a YUN015 M YUN_CA n/a YUN012 first Father of YUN012 Grave 24 Bulgaria Pazardzhik Yunatsite 42.23 24.26 C14 MAMS-45485 5541 28 -4450 -4396 -4342 n/a HV+16311 G2a2b petrous;tooth_33 2 1240K half ds haploid 1.318 178276 0.174 0.1301 n/a n/a n/a PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a @@ -54,7 +54,7 @@ YUN039 F YUN_EBA n/a n/a n/a n/a Burial 3 Bulgaria Pazardzhik Yunatsite 42.23 24 YUN041 F YUN041 n/a n/a n/a n/a Burial 10 Bulgaria Pazardzhik Yunatsite 42.23 24.26 C14 MAMS-45496 4161 24 -2878 -2758 -2638 n/a K1c1 n/a petrous 1 1240K half ds haploid 12.146 785655 1.5206 0.1119 n/a n/a n/a PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a YUN042 F YUN_EBA n/a n/a n/a n/a Burial 45C Bulgaria Pazardzhik Yunatsite 42.23 24.26 C14 MAMS-45497 4181 25 -2885 -2780 -2675 n/a H n/a petrous 1 1240K half ds haploid 10.236 729961 1.308 0.1166 n/a n/a n/a PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a YUN043 F YUN_EBA n/a n/a n/a n/a Burial 6 Bulgaria Pazardzhik Yunatsite 42.23 24.26 C14 MAMS-45498 4162 26 -2879 -2757 -2636 n/a K1a3a n/a petrous 1 1240K half ds haploid 12.561 808840 1.589 0.0814 n/a n/a n/a PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a -YUN044 F YUN_EBA n/a n/a n/a n/a Grave 1 Bulgaria Pazardzhik Yunatsite 42.23 24.26 C14 MAMS-45499 n/a n/a n/a n/a n/a no collagen H1 n/a petrous 1 1240K half ds haploid 9.275 92391 0.0866 0.1198 n/a n/a n/a PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a +YUN044 F YUN_EBA n/a n/a n/a n/a Grave 1 Bulgaria Pazardzhik Yunatsite 42.23 24.26 n/a n/a n/a n/a n/a n/a n/a MAMS-45499 no collagen H1 n/a petrous 1 1240K half ds haploid 9.275 92391 0.0866 0.1198 n/a n/a n/a PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a YUN045 F YUN_EBA n/a n/a n/a n/a Burial 22 Bulgaria Pazardzhik Yunatsite 42.23 24.26 C14 MAMS-45500 4270 24 -2913 -2896 -2879 n/a T2b n/a petrous 1 1240K half ds haploid 3.62 365020 0.4131 0.1195 n/a n/a n/a PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a PTK003 M PTK_CA n/a n/a n/a n/a Area E; sq. 77, feature E11/ individual C Bulgaria Polski Tyrambesh Municipality Petko Karavelovo 43.30139 25.64299 C14 MAMS-51580 5721 24 -4674 -4567 -4461 n/a H3aq R1b1b petrous;tooth_38 2 1240K minus ss haploid 0.492 58805 0.0757 0.4105 n/a n/a n/a PRJEB62503 Alexander Chohadziev 2023_Penske_EarlyContact n/a PTK004 M PTK_CA n/a n/a n/a n/a Area E; sq. 77, feature E11/ individual D Bulgaria Polski Tyrambesh Municipality Petko Karavelovo 43.30139 25.64299 C14 MAMS-38611 5708 28 -4656 -4555 -4455 n/a H3aq I2a1b petrous;tooth_18 2 1240K minus ss haploid 3.543 180795 0.2891 0.4218 0.003711 0.0471 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Alexander Chohadziev 2023_Penske_EarlyContact n/a @@ -71,7 +71,7 @@ PIE014 F PIE_CA n/a n/a n/a n/a P10 J402b Romania Giurgiu County Pietrele Măgur PIE015 M PIE_CA n/a n/a n/a n/a L-Komplex 1/2 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47805 5704 26 -4612 -4533 -4455 n/a V1a G2a2b2a1a1c2 petrous 1 1240K half ds haploid 32.72 623559 0.9794 0.2336 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a PIE017 M PIE_CA n/a n/a n/a n/a P12 B208 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47806 5761 29 -4708 -4622 -4537 n/a J1 R1b1b petrous 1 1240K half ds haploid 57.52 650841 1.0442 0.1675 0.018341 0.00761 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a PIE018 F PIE_CA n/a n/a n/a n/a P13 T213a Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47807 5602 26 -4494 -4425 -4357 n/a - n/a petrous 1 1240K half ds haploid 1.842 108635 0.1006 0.1418 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a -PIE019 M PIE_CA n/a n/a n/a n/a P10 M647 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47808 n/a n/a n/a n/a n/a no collagen T2b R1b1b petrous 1 1240K half ds haploid 11.546 418031 0.5197 0.1317 0.006744 0.00978 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE019 M PIE_CA n/a n/a n/a n/a P10 M647 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 n/a n/a n/a n/a n/a n/a n/a MAMS-47808 no collagen T2b R1b1b petrous 1 1240K half ds haploid 11.546 418031 0.5197 0.1317 0.006744 0.00978 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a PIE022 M PIE_CA n/a n/a n/a n/a P11 N707 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47809 5531 25 -4445 -4391 -4338 n/a W3b G2a2a petrous;tooth 2 1240K half ds haploid 3.93 97953 0.0911 0.1852 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a PIE023 M PIE_CA n/a n/a n/a n/a P13 T210-2 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47810 5676 29 -4603 -4525 -4447 n/a J2b1 R1b1b petrous;tooth 2 1240K half ds haploid 38.607 747469 1.2931 0.1116 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a PIE025 M PIE_CA n/a n/a n/a n/a P09 F102 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47812 5678 24 -4586 -4517 -4448 n/a H5 T1 petrous 1 1240K half ds haploid 16.099 264144 0.2724 0.1683 -0.005324 0.00528 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a @@ -81,7 +81,7 @@ PIE029 M PIE_CA n/a n/a n/a n/a P11 F881 Romania Giurgiu County Pietrele Măgura PIE030 F PIE_CA n/a n/a n/a n/a P09 J376b Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47816 5419 27 -4341 -4259 -4177 n/a T2c1d1 n/a tooth_84 2 1240K half ds haploid 1.552 63616 0.0383 0.2275 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a PIE032 M PIE_CA n/a n/a n/a n/a P10 J390 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47817 5574 28 -4453 -4402 -4351 n/a T2b G2a tooth 1 1240K half ds haploid 2.196 89763 0.0847 0.2416 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a PIE033 M PIE_CA n/a n/a n/a n/a P08 B114 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47818 5734 28 -4681 -4588 -4496 n/a X2i+@225 G2a2a1a2a petrous;tooth_27 2 1240K half ds haploid 47.304 693600 1.1553 0.1245 0.008693 0.00495 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a -PIE034 F PIE_CA n/a n/a n/a n/a P08 B 108a)1 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47819 5741 22 -4681 -4591 -4502 n/a H5 n/a petrous;tooh_47 3 1240K half ds haploid 61.672 638978 0.9149 0.1321 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE034 F PIE_CA n/a n/a n/a n/a P08 B 108a)1 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47819 5741 22 -4681 -4591 -4502 n/a H5 n/a petrous;tooth_47 3 1240K half ds haploid 61.672 638978 0.9149 0.1321 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a PIE035 F PIE_CA n/a n/a n/a n/a P11 L293b Individuum B Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47820 5700 23 -4607 -4532 -4457 n/a K1 n/a petrous;tooth 2 1240K half ds haploid 6.388 300851 0.3276 0.2172 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a PIE037 M PIE_CA n/a n/a n/a n/a P13 L121 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47821 5439 26 -4346 -4297 -4249 n/a N1a1a1a3 H2 petrous;tooth 1 1240K half ds haploid 27.351 606612 0.828 0.1349 0.006182 0.00569 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a PIE038 F PIE_CA n/a n/a n/a n/a P12 L057 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47822 5722 26 -4676 -4568 -4461 n/a K1a n/a petrous;tooth_36 2 1240K half ds haploid 46.639 776308 1.4672 0.1488 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a diff --git a/2023_Penske_EarlyContact/POSEIDON.yml b/2023_Penske_EarlyContact/POSEIDON.yml index 5902dff3..6b4107a6 100644 --- a/2023_Penske_EarlyContact/POSEIDON.yml +++ b/2023_Penske_EarlyContact/POSEIDON.yml @@ -18,6 +18,6 @@ genotypeData: indFileChkSum: b0459c7047f59a20fc8a19d6001ff5fd snpSet: 1240K jannoFile: 2023_Penske_EarlyContact.janno -jannoFileChkSum: e1d8a0b49504cd138b2a771d2171e7c4 +jannoFileChkSum: 8753208e50be7ea2c4631c42205afeed bibFile: 2023_Penske_EarlyContact.bib bibFileChkSum: 58a77722660c24a060ab5bae008fb2b5