diff --git a/2012_PattersonGenetics/CHANGELOG.md b/2012_PattersonGenetics/CHANGELOG.md index 9280ebad..19cf2eab 100644 --- a/2012_PattersonGenetics/CHANGELOG.md +++ b/2012_PattersonGenetics/CHANGELOG.md @@ -1,3 +1,4 @@ +- V 2.1.2: fixed Genotype_Ploidy information - V 2.1.1: Fixed attribution to a wrong AADR version - V 2.1.0: Update of references in the .bib file - V 2.0.0: updated the package to Poseidon v2.5 and adjusted the .janno file accordingly diff --git a/2012_PattersonGenetics/POSEIDON.yml b/2012_PattersonGenetics/POSEIDON.yml index 6d728b11..cd91f125 100644 --- a/2012_PattersonGenetics/POSEIDON.yml +++ b/2012_PattersonGenetics/POSEIDON.yml @@ -7,8 +7,8 @@ contributor: email: ghalichi@shh.mpg.de - name: Clemens Schmid email: schmid@shh.mpg.de -packageVersion: 2.1.1 -lastModified: 2023-07-11 +packageVersion: 2.1.2 +lastModified: 2023-09-14 genotypeData: format: PLINK genoFile: 2012_PattersonGenetics.bed @@ -19,7 +19,7 @@ genotypeData: indFileChkSum: 224fd9ab583dc6ca3ee805e3c818e4ad snpSet: HumanOrigins jannoFile: 2012_PattersonGenetics.janno -jannoFileChkSum: b43ca66ea2859cc0abdec243555424f7 +jannoFileChkSum: 92084aec5c9fcdf0a556484080765755 bibFile: 2012_PattersonGenetics.bib bibFileChkSum: d2cb9f520044ec20ab69e71791f578a2 changelogFile: CHANGELOG.md diff --git a/2012_PickrellNatureCommunications/CHANGELOG.md b/2012_PickrellNatureCommunications/CHANGELOG.md index 9280ebad..19cf2eab 100644 --- a/2012_PickrellNatureCommunications/CHANGELOG.md +++ b/2012_PickrellNatureCommunications/CHANGELOG.md @@ -1,3 +1,4 @@ +- V 2.1.2: fixed Genotype_Ploidy information - V 2.1.1: Fixed attribution to a wrong AADR version - V 2.1.0: Update of references in the .bib file - V 2.0.0: updated the package to Poseidon v2.5 and adjusted the .janno file accordingly diff --git a/2012_PickrellNatureCommunications/POSEIDON.yml b/2012_PickrellNatureCommunications/POSEIDON.yml index 3ee593c5..b9b2a5fa 100644 --- a/2012_PickrellNatureCommunications/POSEIDON.yml +++ b/2012_PickrellNatureCommunications/POSEIDON.yml @@ -6,8 +6,8 @@ contributor: email: ghalichi@shh.mpg.de - name: Clemens Schmid email: schmid@shh.mpg.de -packageVersion: 2.1.1 -lastModified: 2023-07-11 +packageVersion: 2.1.2 +lastModified: 2023-09-14 genotypeData: format: PLINK genoFile: 2012_PickrellNatureCommunications.bed @@ -18,7 +18,7 @@ genotypeData: indFileChkSum: ee8c45a83e3ed7ec8c38f34c796569ab snpSet: HumanOrigins jannoFile: 2012_PickrellNatureCommunications.janno -jannoFileChkSum: ecd91147bdec4686344c73ef134e8953 +jannoFileChkSum: edce071d19f6e3ac38fc0d1e8122ccd5 bibFile: 2012_PickrellNatureCommunications.bib bibFileChkSum: f554e28c3fe2133bb2bb1a02faec657f changelogFile: CHANGELOG.md diff --git a/2014_LazaridisNature/CHANGELOG.md b/2014_LazaridisNature/CHANGELOG.md index 55fdc7e5..f8a36f07 100644 --- a/2014_LazaridisNature/CHANGELOG.md +++ b/2014_LazaridisNature/CHANGELOG.md @@ -1,3 +1,4 @@ +- V 4.0.1: fixed Genotype_Ploidy information - V 4.0.0: Changed a group name that is incompatible with trident ('<' -> 'lt') - V 3.1.1: Fixed attribution to a wrong AADR version - V 3.1.0: Update of references in the .bib file diff --git a/2014_LazaridisNature/POSEIDON.yml b/2014_LazaridisNature/POSEIDON.yml index 23e21bab..4662a56e 100644 --- a/2014_LazaridisNature/POSEIDON.yml +++ b/2014_LazaridisNature/POSEIDON.yml @@ -10,8 +10,8 @@ contributor: email: schmid@shh.mpg.de - name: Selina Carlhoff email: selina_carlhoff@eva.mpg.de -packageVersion: 4.0.0 -lastModified: 2023-07-26 +packageVersion: 4.0.1 +lastModified: 2023-09-14 genotypeData: format: PLINK genoFile: 2014_LazaridisNature.bed @@ -22,7 +22,7 @@ genotypeData: indFileChkSum: 39f17bb109a8f4b187ac0057d5eed0c1 snpSet: 1240K jannoFile: 2014_LazaridisNature.janno -jannoFileChkSum: b97f6c626f20710cc7aa51743c23701c +jannoFileChkSum: 19c9785389bf15a72fbfc3e50666cec1 bibFile: 2014_LazaridisNature.bib bibFileChkSum: ebc3da14d9fce13de536e82729cf3b73 readmeFile: README.txt diff --git a/2015_1000Genomes_1240K_haploid_pulldown/CHANGELOG.md b/2015_1000Genomes_1240K_haploid_pulldown/CHANGELOG.md index 363e29da..0b7d330f 100644 --- a/2015_1000Genomes_1240K_haploid_pulldown/CHANGELOG.md +++ b/2015_1000Genomes_1240K_haploid_pulldown/CHANGELOG.md @@ -1,3 +1,4 @@ +- V 2.1.2: fixed Genotype_Ploidy information - V 2.1.1: Fixed attribution to a wrong AADR version - V 2.1.0: Update of references in the .bib file - V 2.0.1: Genetic_Source_Accession_IDs added diff --git a/2015_1000Genomes_1240K_haploid_pulldown/POSEIDON.yml b/2015_1000Genomes_1240K_haploid_pulldown/POSEIDON.yml index 6b7b5cc0..2280e918 100644 --- a/2015_1000Genomes_1240K_haploid_pulldown/POSEIDON.yml +++ b/2015_1000Genomes_1240K_haploid_pulldown/POSEIDON.yml @@ -5,8 +5,8 @@ description: 1000 Genomes project data pulled down to the 1240K SNP array. Origi contributor: - name: Ayshin Ghalichi email: ghalichi@shh.mpg.de -packageVersion: 2.1.1 -lastModified: 2023-07-11 +packageVersion: 2.1.2 +lastModified: 2023-09-14 genotypeData: format: PLINK genoFile: KGP.bed @@ -17,7 +17,7 @@ genotypeData: indFileChkSum: ddb38772e86acacaac56fc1a59e3c214 snpSet: 1240K jannoFile: KGP.janno -jannoFileChkSum: 7d9e1003bb0a70521cbaa9afe0709f30 +jannoFileChkSum: 2e1ded15c3f2fc5eafc8e972e295af1a bibFile: LITERATURE.bib bibFileChkSum: e08b0ab1243ae9ecaf3592f1d873b8e7 changelogFile: CHANGELOG.md diff --git a/2016_LazaridisNature/CHANGELOG.md b/2016_LazaridisNature/CHANGELOG.md index f2371d81..7700b192 100644 --- a/2016_LazaridisNature/CHANGELOG.md +++ b/2016_LazaridisNature/CHANGELOG.md @@ -1,3 +1,4 @@ +- V 2.1.2: fixed Genotype_Ploidy information - V 2.1.1: Fixed attribution to a wrong AADR version - V 2.1.0: Update of references in the .bib file - V 2.0.1: Genetic_Source_Accession_IDs diff --git a/2016_LazaridisNature/POSEIDON.yml b/2016_LazaridisNature/POSEIDON.yml index a5845d2e..015ea332 100644 --- a/2016_LazaridisNature/POSEIDON.yml +++ b/2016_LazaridisNature/POSEIDON.yml @@ -8,8 +8,8 @@ contributor: email: ghalichi@shh.mpg.de - name: Clemens Schmid email: schmid@shh.mpg.de -packageVersion: 2.1.1 -lastModified: 2023-07-11 +packageVersion: 2.1.2 +lastModified: 2023-09-14 genotypeData: format: PLINK genoFile: 2016_LazaridisNature.bed @@ -20,7 +20,7 @@ genotypeData: indFileChkSum: a64277293eb1fda5dd9a947ccc4a9b90 snpSet: 1240K jannoFile: 2016_LazaridisNature.janno -jannoFileChkSum: 32614b2dfe9a07ccf83e6084a38580c3 +jannoFileChkSum: 44a1a39bc4b3cd99bae8e33cc4973fd3 bibFile: 2016_LazaridisNature.bib bibFileChkSum: 8ccfa108b7d4464ad13692ab843b63fd changelogFile: CHANGELOG.md diff --git a/2016_SkoglundNature/CHANGELOG.txt b/2016_SkoglundNature/CHANGELOG.txt index c77574c9..5e26d674 100644 --- a/2016_SkoglundNature/CHANGELOG.txt +++ b/2016_SkoglundNature/CHANGELOG.txt @@ -1,3 +1,4 @@ +- V 2.1.2: fixed Genotype_Ploidy information - V 2.1.1: Fixed attribution to a wrong AADR version - V 2.1.0: Update of references in the .bib file - V 2.0.1: Genetic_Source_Accession_IDs added diff --git a/2016_SkoglundNature/POSEIDON.yml b/2016_SkoglundNature/POSEIDON.yml index 91274314..ade6a4cc 100644 --- a/2016_SkoglundNature/POSEIDON.yml +++ b/2016_SkoglundNature/POSEIDON.yml @@ -7,8 +7,8 @@ contributor: email: ghalichi@shh.mpg.de - name: Clemens Schmid email: schmid@shh.mpg.de -packageVersion: 2.1.1 -lastModified: 2023-07-11 +packageVersion: 2.1.2 +lastModified: 2023-09-14 genotypeData: format: PLINK genoFile: 2016_SkoglundNature.bed @@ -19,7 +19,7 @@ genotypeData: indFileChkSum: 115d3547ad3a8172d756de29fc6dfa1c snpSet: 1240K jannoFile: 2016_SkoglundNature.janno -jannoFileChkSum: b2f871481cda73c5ff95d7e47673465b +jannoFileChkSum: a7857fd504c8d045fcc47eaf50139ad5 bibFile: 2016_SkoglundNature.bib bibFileChkSum: 3942100b17e4847a3eb7cc86a1e2a036 changelogFile: CHANGELOG.txt diff --git a/2017_SkoglundCell/CHANGELOG.md b/2017_SkoglundCell/CHANGELOG.md index f2371d81..7700b192 100644 --- a/2017_SkoglundCell/CHANGELOG.md +++ b/2017_SkoglundCell/CHANGELOG.md @@ -1,3 +1,4 @@ +- V 2.1.2: fixed Genotype_Ploidy information - V 2.1.1: Fixed attribution to a wrong AADR version - V 2.1.0: Update of references in the .bib file - V 2.0.1: Genetic_Source_Accession_IDs diff --git a/2017_SkoglundCell/POSEIDON.yml b/2017_SkoglundCell/POSEIDON.yml index 86a1e38a..b58a6832 100644 --- a/2017_SkoglundCell/POSEIDON.yml +++ b/2017_SkoglundCell/POSEIDON.yml @@ -6,8 +6,8 @@ contributor: email: ghalichi@shh.mpg.de - name: Clemens Schmid email: schmid@shh.mpg.de -packageVersion: 2.1.1 -lastModified: 2023-07-11 +packageVersion: 2.1.2 +lastModified: 2023-09-14 genotypeData: format: PLINK genoFile: 2017_SkoglundCell.bed @@ -18,7 +18,7 @@ genotypeData: indFileChkSum: 36db50175f0c4d444fa6ea781cb25661 snpSet: 1240K jannoFile: 2017_SkoglundCell.janno -jannoFileChkSum: 27ef4509ea4db71e1f7a66d2d7e54312 +jannoFileChkSum: 13ee4afd293170f57264aab798ea719b bibFile: 2017_SkoglundCell.bib bibFileChkSum: 7f7585b7107507b6d4376528774c590a changelogFile: CHANGELOG.md diff --git a/2017_VyasAJPA/CHANGELOG.md b/2017_VyasAJPA/CHANGELOG.md index 9280ebad..19cf2eab 100644 --- a/2017_VyasAJPA/CHANGELOG.md +++ b/2017_VyasAJPA/CHANGELOG.md @@ -1,3 +1,4 @@ +- V 2.1.2: fixed Genotype_Ploidy information - V 2.1.1: Fixed attribution to a wrong AADR version - V 2.1.0: Update of references in the .bib file - V 2.0.0: updated the package to Poseidon v2.5 and adjusted the .janno file accordingly diff --git a/2017_VyasAJPA/POSEIDON.yml b/2017_VyasAJPA/POSEIDON.yml index 2d4302eb..5c2bb85e 100644 --- a/2017_VyasAJPA/POSEIDON.yml +++ b/2017_VyasAJPA/POSEIDON.yml @@ -7,8 +7,8 @@ contributor: email: ghalichi@shh.mpg.de - name: Clemens Schmid email: schmid@shh.mpg.de -packageVersion: 2.1.1 -lastModified: 2023-07-11 +packageVersion: 2.1.2 +lastModified: 2023-09-14 genotypeData: format: PLINK genoFile: 2017_VyasAJPA.bed @@ -19,7 +19,7 @@ genotypeData: indFileChkSum: 62d430c20439946aef6b53cc2b6b6e19 snpSet: HumanOrigins jannoFile: 2017_VyasAJPA.janno -jannoFileChkSum: fe13a78dd7e7cdee04a66d9dbde3050c +jannoFileChkSum: 6b0ed9733e93f8659c482977f3ef54fe bibFile: 2017_VyasAJPA.bib bibFileChkSum: 9e7306c2e6345c122bd990d485301220 changelogFile: CHANGELOG.md diff --git a/2019_Flegontov_PalaeoEskimo/CHANGELOG.md b/2019_Flegontov_PalaeoEskimo/CHANGELOG.md index acc4864d..66055010 100644 --- a/2019_Flegontov_PalaeoEskimo/CHANGELOG.md +++ b/2019_Flegontov_PalaeoEskimo/CHANGELOG.md @@ -1,3 +1,4 @@ +- V 2.2.1: fixed Genotype_Ploidy information - V 2.2.0: Update of references in the .bib file - V 2.1.0: added a .ssf file - V 2.0.1: Genetic_Source_Accession_IDs added diff --git a/2019_Flegontov_PalaeoEskimo/POSEIDON.yml b/2019_Flegontov_PalaeoEskimo/POSEIDON.yml index 5f656eab..10d5035b 100644 --- a/2019_Flegontov_PalaeoEskimo/POSEIDON.yml +++ b/2019_Flegontov_PalaeoEskimo/POSEIDON.yml @@ -7,8 +7,8 @@ contributor: email: ghalichi@shh.mpg.de - name: Clemens Schmid email: schmid@shh.mpg.de -packageVersion: 2.2.0 -lastModified: 2023-07-04 +packageVersion: 2.2.1 +lastModified: 2023-09-14 genotypeData: format: PLINK genoFile: 2019_Flegontov_PalaeoEskimo.bed @@ -19,7 +19,7 @@ genotypeData: indFileChkSum: 978a0f5e8925ac29077bbc490660ce16 snpSet: 1240K jannoFile: 2019_Flegontov_PalaeoEskimo.janno -jannoFileChkSum: 6894499075c9ffd24256d41be93f0785 +jannoFileChkSum: bcd25caecbd3995f79ea21bb334c6971 sequencingSourceFile: ENAtable.ssf sequencingSourceFileChkSum: 8a26c7217b425df53dcda90126bfc107 bibFile: 2019_Flegontov_PalaeoEskimo.bib diff --git a/2019_Jeong_InnerEurasia/CHANGELOG.txt b/2019_Jeong_InnerEurasia/CHANGELOG.txt index 0be1d2a9..baf6f1a5 100644 --- a/2019_Jeong_InnerEurasia/CHANGELOG.txt +++ b/2019_Jeong_InnerEurasia/CHANGELOG.txt @@ -1,3 +1,4 @@ +- V 3.0.1: fixed Genotype_Ploidy information - V 3.0.0: Changed two group names that are incompatible with trident ('<' -> 'lt') - V 2.1.0: Update of references in the .bib file - V 2.0.1: Genetic_Source_Accession_IDs added diff --git a/2019_Jeong_InnerEurasia/POSEIDON.yml b/2019_Jeong_InnerEurasia/POSEIDON.yml index dbb75b69..46a43326 100644 --- a/2019_Jeong_InnerEurasia/POSEIDON.yml +++ b/2019_Jeong_InnerEurasia/POSEIDON.yml @@ -5,8 +5,8 @@ description: The genetic history of admixture across inner Eurasia. Originally A contributor: - name: Ayshin Ghalichi email: ghalichi@shh.mpg.de -packageVersion: 3.0.0 -lastModified: 2023-07-26 +packageVersion: 3.0.1 +lastModified: 2023-09-14 genotypeData: format: PLINK genoFile: 2019_Jeong_InnerEurasia.bed @@ -17,7 +17,7 @@ genotypeData: indFileChkSum: 5d7ffa6f67daa37e706c6d1f6cfd2211 snpSet: 1240K jannoFile: 2019_Jeong_InnerEurasia.janno -jannoFileChkSum: 24975ee4a09936e480b41058fa2dd76a +jannoFileChkSum: c391595f84825987a20455dd3870d24a bibFile: 2019_Jeong_InnerEurasia.bib bibFileChkSum: 1f951edb2083205a1b67061ac0b61d78 changelogFile: CHANGELOG.txt