From a3f12b9fe579e52bdf49535f9e44538760b1c502 Mon Sep 17 00:00:00 2001 From: AyGhal Date: Fri, 24 Nov 2023 12:06:13 +0100 Subject: [PATCH] fixed typos and Date_Type. --- .../2023_Penske_EarlyContact.janno | 10 +++++----- 2023_Penske_EarlyContact/POSEIDON.yml | 2 +- 2 files changed, 6 insertions(+), 6 deletions(-) diff --git a/2023_Penske_EarlyContact/2023_Penske_EarlyContact.janno b/2023_Penske_EarlyContact/2023_Penske_EarlyContact.janno index c9be9646..54ac8d04 100644 --- a/2023_Penske_EarlyContact/2023_Penske_EarlyContact.janno +++ b/2023_Penske_EarlyContact/2023_Penske_EarlyContact.janno @@ -31,9 +31,9 @@ YUN001 F YUN_CA n/a n/a n/a n/a Grave 110 Bulgaria Pazardzhik Yunatsite 42.23 24 YUN003 F YUN_CA n/a YUN049 identical n/a Grave 69 Bulgaria Pazardzhik Yunatsite 42.23 24.26 n/a n/a n/a n/a n/a n/a n/a n/a U2+152 n/a petrous;tooth_47 3 1240K half ds haploid 13.802 931532 1.5303 0.1218 n/a n/a n/a PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a YUN005 F YUN_CA n/a n/a n/a n/a Grave 104 Bulgaria Pazardzhik Yunatsite 42.23 24.26 C14 MAMS-45478 5570 24 -4453 -4404 -4356 n/a U4a2 n/a petrous;tooth_47 2 1240K half ds haploid 6.447 421904 0.5265 0.1255 n/a n/a n/a PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a YUN006 F YUN_CA n/a YUN031 identical n/a Skeleton 127 Bulgaria Pazardzhik Yunatsite 42.23 24.26 C14 MAMS-45479 5589 26 -4462 -4409 -4356 n/a K1a n/a petrous 2 1240K half ds haploid 16.388 654756 1.8984 0.1197 n/a n/a n/a PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a -YUN007 M YUN_CA n/a n/a n/a n/a Grave 87 Bulgaria Pazardzhik Yunatsite 42.23 24.26 C14 MAMS-45480 5551 27 -4451 -4398 -4346 n/a H J2a1a2b2a2~ petrous;tooh_46 2 1240K half ds haploid 10.289 714271 1.2191 0.1022 0.002557 0.00282 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a +YUN007 M YUN_CA n/a n/a n/a n/a Grave 87 Bulgaria Pazardzhik Yunatsite 42.23 24.26 C14 MAMS-45480 5551 27 -4451 -4398 -4346 n/a H J2a1a2b2a2~ petrous;tooth_46 2 1240K half ds haploid 10.289 714271 1.2191 0.1022 0.002557 0.00282 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a YUN009 M YUN_CA n/a n/a n/a n/a Grave 102 Bulgaria Pazardzhik Yunatsite 42.23 24.26 C14 MAMS-45482 5548 28 -4450 -4398 -4346 n/a H62 G2a2b2b1a2 petrous 1 1240K half ds haploid 7.323 593481 0.8752 0.0801 0.004825 0.00494 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a -YUN012 F YUN_CA n/a YUN015 first Dauther of YUN015 Grave 23 Bulgaria Pazardzhik Yunatsite 42.23 24.26 n/a n/a n/a n/a n/a n/a n/a n/a X2b n/a petrous 1 1240K half ds haploid 13.153 751668 1.4107 0.0989 n/a n/a n/a PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a +YUN012 F YUN_CA n/a YUN015 first Daughter of YUN015 Grave 23 Bulgaria Pazardzhik Yunatsite 42.23 24.26 n/a n/a n/a n/a n/a n/a n/a n/a X2b n/a petrous 1 1240K half ds haploid 13.153 751668 1.4107 0.0989 n/a n/a n/a PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a YUN013 M YUN_CA n/a n/a n/a n/a Grave 77/81 Bulgaria Pazardzhik Yunatsite 42.23 24.26 C14 MAMS-45483 5624 26 -4517 -4442 -4367 n/a H7 C1a2b petrous 1 1240K half ds haploid 8.63 533002 0.7021 0.1358 0.009945 0.00771 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a YUN014 F YUN_CA n/a n/a n/a n/a Grave 67 Bulgaria Pazardzhik Yunatsite 42.23 24.26 C14 MAMS-45484 5577 29 -4459 -4406 -4354 n/a T2b23 n/a petrous 1 1240K half ds haploid 7.722 474178 0.5581 0.1208 n/a n/a n/a PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a YUN015 M YUN_CA n/a YUN012 first Father of YUN012 Grave 24 Bulgaria Pazardzhik Yunatsite 42.23 24.26 C14 MAMS-45485 5541 28 -4450 -4396 -4342 n/a HV+16311 G2a2b petrous;tooth_33 2 1240K half ds haploid 1.318 178276 0.174 0.1301 n/a n/a n/a PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a @@ -54,7 +54,7 @@ YUN039 F YUN_EBA n/a n/a n/a n/a Burial 3 Bulgaria Pazardzhik Yunatsite 42.23 24 YUN041 F YUN041 n/a n/a n/a n/a Burial 10 Bulgaria Pazardzhik Yunatsite 42.23 24.26 C14 MAMS-45496 4161 24 -2878 -2758 -2638 n/a K1c1 n/a petrous 1 1240K half ds haploid 12.146 785655 1.5206 0.1119 n/a n/a n/a PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a YUN042 F YUN_EBA n/a n/a n/a n/a Burial 45C Bulgaria Pazardzhik Yunatsite 42.23 24.26 C14 MAMS-45497 4181 25 -2885 -2780 -2675 n/a H n/a petrous 1 1240K half ds haploid 10.236 729961 1.308 0.1166 n/a n/a n/a PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a YUN043 F YUN_EBA n/a n/a n/a n/a Burial 6 Bulgaria Pazardzhik Yunatsite 42.23 24.26 C14 MAMS-45498 4162 26 -2879 -2757 -2636 n/a K1a3a n/a petrous 1 1240K half ds haploid 12.561 808840 1.589 0.0814 n/a n/a n/a PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a -YUN044 F YUN_EBA n/a n/a n/a n/a Grave 1 Bulgaria Pazardzhik Yunatsite 42.23 24.26 C14 MAMS-45499 n/a n/a n/a n/a n/a no collagen H1 n/a petrous 1 1240K half ds haploid 9.275 92391 0.0866 0.1198 n/a n/a n/a PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a +YUN044 F YUN_EBA n/a n/a n/a n/a Grave 1 Bulgaria Pazardzhik Yunatsite 42.23 24.26 n/a n/a n/a n/a n/a n/a n/a MAMS-45499 no collagen H1 n/a petrous 1 1240K half ds haploid 9.275 92391 0.0866 0.1198 n/a n/a n/a PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a YUN045 F YUN_EBA n/a n/a n/a n/a Burial 22 Bulgaria Pazardzhik Yunatsite 42.23 24.26 C14 MAMS-45500 4270 24 -2913 -2896 -2879 n/a T2b n/a petrous 1 1240K half ds haploid 3.62 365020 0.4131 0.1195 n/a n/a n/a PRJEB62503 Kamen and Yavor Boyadziev 2023_Penske_EarlyContact n/a PTK003 M PTK_CA n/a n/a n/a n/a Area E; sq. 77, feature E11/ individual C Bulgaria Polski Tyrambesh Municipality Petko Karavelovo 43.30139 25.64299 C14 MAMS-51580 5721 24 -4674 -4567 -4461 n/a H3aq R1b1b petrous;tooth_38 2 1240K minus ss haploid 0.492 58805 0.0757 0.4105 n/a n/a n/a PRJEB62503 Alexander Chohadziev 2023_Penske_EarlyContact n/a PTK004 M PTK_CA n/a n/a n/a n/a Area E; sq. 77, feature E11/ individual D Bulgaria Polski Tyrambesh Municipality Petko Karavelovo 43.30139 25.64299 C14 MAMS-38611 5708 28 -4656 -4555 -4455 n/a H3aq I2a1b petrous;tooth_18 2 1240K minus ss haploid 3.543 180795 0.2891 0.4218 0.003711 0.0471 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Alexander Chohadziev 2023_Penske_EarlyContact n/a @@ -71,7 +71,7 @@ PIE014 F PIE_CA n/a n/a n/a n/a P10 J402b Romania Giurgiu County Pietrele Măgur PIE015 M PIE_CA n/a n/a n/a n/a L-Komplex 1/2 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47805 5704 26 -4612 -4533 -4455 n/a V1a G2a2b2a1a1c2 petrous 1 1240K half ds haploid 32.72 623559 0.9794 0.2336 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a PIE017 M PIE_CA n/a n/a n/a n/a P12 B208 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47806 5761 29 -4708 -4622 -4537 n/a J1 R1b1b petrous 1 1240K half ds haploid 57.52 650841 1.0442 0.1675 0.018341 0.00761 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a PIE018 F PIE_CA n/a n/a n/a n/a P13 T213a Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47807 5602 26 -4494 -4425 -4357 n/a - n/a petrous 1 1240K half ds haploid 1.842 108635 0.1006 0.1418 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a -PIE019 M PIE_CA n/a n/a n/a n/a P10 M647 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47808 n/a n/a n/a n/a n/a no collagen T2b R1b1b petrous 1 1240K half ds haploid 11.546 418031 0.5197 0.1317 0.006744 0.00978 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE019 M PIE_CA n/a n/a n/a n/a P10 M647 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 n/a n/a n/a n/a n/a n/a n/a MAMS-47808 no collagen T2b R1b1b petrous 1 1240K half ds haploid 11.546 418031 0.5197 0.1317 0.006744 0.00978 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a PIE022 M PIE_CA n/a n/a n/a n/a P11 N707 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47809 5531 25 -4445 -4391 -4338 n/a W3b G2a2a petrous;tooth 2 1240K half ds haploid 3.93 97953 0.0911 0.1852 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a PIE023 M PIE_CA n/a n/a n/a n/a P13 T210-2 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47810 5676 29 -4603 -4525 -4447 n/a J2b1 R1b1b petrous;tooth 2 1240K half ds haploid 38.607 747469 1.2931 0.1116 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a PIE025 M PIE_CA n/a n/a n/a n/a P09 F102 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47812 5678 24 -4586 -4517 -4448 n/a H5 T1 petrous 1 1240K half ds haploid 16.099 264144 0.2724 0.1683 -0.005324 0.00528 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a @@ -81,7 +81,7 @@ PIE029 M PIE_CA n/a n/a n/a n/a P11 F881 Romania Giurgiu County Pietrele Măgura PIE030 F PIE_CA n/a n/a n/a n/a P09 J376b Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47816 5419 27 -4341 -4259 -4177 n/a T2c1d1 n/a tooth_84 2 1240K half ds haploid 1.552 63616 0.0383 0.2275 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a PIE032 M PIE_CA n/a n/a n/a n/a P10 J390 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47817 5574 28 -4453 -4402 -4351 n/a T2b G2a tooth 1 1240K half ds haploid 2.196 89763 0.0847 0.2416 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a PIE033 M PIE_CA n/a n/a n/a n/a P08 B114 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47818 5734 28 -4681 -4588 -4496 n/a X2i+@225 G2a2a1a2a petrous;tooth_27 2 1240K half ds haploid 47.304 693600 1.1553 0.1245 0.008693 0.00495 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a -PIE034 F PIE_CA n/a n/a n/a n/a P08 B 108a)1 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47819 5741 22 -4681 -4591 -4502 n/a H5 n/a petrous;tooh_47 3 1240K half ds haploid 61.672 638978 0.9149 0.1321 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a +PIE034 F PIE_CA n/a n/a n/a n/a P08 B 108a)1 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47819 5741 22 -4681 -4591 -4502 n/a H5 n/a petrous;tooth_47 3 1240K half ds haploid 61.672 638978 0.9149 0.1321 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a PIE035 F PIE_CA n/a n/a n/a n/a P11 L293b Individuum B Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47820 5700 23 -4607 -4532 -4457 n/a K1 n/a petrous;tooth 2 1240K half ds haploid 6.388 300851 0.3276 0.2172 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a PIE037 M PIE_CA n/a n/a n/a n/a P13 L121 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47821 5439 26 -4346 -4297 -4249 n/a N1a1a1a3 H2 petrous;tooth 1 1240K half ds haploid 27.351 606612 0.828 0.1349 0.006182 0.00569 ANGSD_Xchrom_contamination_males_MoM_Method2_new_llh PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a PIE038 F PIE_CA n/a n/a n/a n/a P12 L057 Romania Giurgiu County Pietrele Măgura Gorgana 44.06806 26.15617 C14 MAMS-47822 5722 26 -4676 -4568 -4461 n/a K1a n/a petrous;tooth_36 2 1240K half ds haploid 46.639 776308 1.4672 0.1488 n/a n/a n/a PRJEB62503 Svend Hansen 2023_Penske_EarlyContact n/a diff --git a/2023_Penske_EarlyContact/POSEIDON.yml b/2023_Penske_EarlyContact/POSEIDON.yml index 5902dff3..6b4107a6 100644 --- a/2023_Penske_EarlyContact/POSEIDON.yml +++ b/2023_Penske_EarlyContact/POSEIDON.yml @@ -18,6 +18,6 @@ genotypeData: indFileChkSum: b0459c7047f59a20fc8a19d6001ff5fd snpSet: 1240K jannoFile: 2023_Penske_EarlyContact.janno -jannoFileChkSum: e1d8a0b49504cd138b2a771d2171e7c4 +jannoFileChkSum: 8753208e50be7ea2c4631c42205afeed bibFile: 2023_Penske_EarlyContact.bib bibFileChkSum: 58a77722660c24a060ab5bae008fb2b5