diff --git a/2023_Peltola_VolgaOka/2023_Peltola_VolgaOka.bed b/2023_Peltola_VolgaOka/2023_Peltola_VolgaOka.bed new file mode 100644 index 00000000..6788bc1f --- /dev/null +++ b/2023_Peltola_VolgaOka/2023_Peltola_VolgaOka.bed @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:07fc461b1a75ba0380e66e6eb19c27f2f5fc7b65cf30b896a065076e82267391 +size 9864107 diff --git a/2023_Peltola_VolgaOka/2023_Peltola_VolgaOka.bib b/2023_Peltola_VolgaOka/2023_Peltola_VolgaOka.bib new file mode 100644 index 00000000..f0ec10e0 --- /dev/null +++ b/2023_Peltola_VolgaOka/2023_Peltola_VolgaOka.bib @@ -0,0 +1,12 @@ +@article{PeltolaCurrentBiology2023, +title = {Genetic admixture and language shift in the medieval Volga-Oka interfluve}, +journal = {Current Biology}, +year = {2022}, +issn = {0960-9822}, +doi = {https://doi.org/10.1016/j.cub.2022.11.036}, +url = {https://www.sciencedirect.com/science/article/pii/S0960982222018267}, +author = {Sanni Peltola and Kerttu Majander and Nikolaj Makarov and Maria Dobrovolskaya and Kerkko Nordqvist and Elina Salmela and Päivi Onkamo}, +keywords = {ancient DNA, Iron Age, medieval times, Uralic languages, language shift, Volga-Oka interfluve}, +abstract = {Summary +The Volga-Oka interfluve in northwestern Russia has an intriguing history of population influx and language shift during the Common Era. Today, most inhabitants of the region speak Russian, but until medieval times, northwestern Russia was inhabited by Uralic-speaking peoples.1,2,3 A gradual shift to Slavic languages started in the second half of the first millennium with the expansion of Slavic tribes, which led to the foundation of the Kievan Rus’ state in the late 9th century CE. The medieval Rus’ was multicultural and multilingual—historical records suggest that its northern regions comprised Slavic and Uralic peoples ruled by Scandinavian settlers.4,5,6 In the 10th–11th centuries, the introduction of Christianity and Cyrillic literature raised the prestige status of Slavic, driving a language shift from Uralic to Slavic.3 This eventually led to the disappearance of the Uralic languages from northwestern Russia. Here, we study a 1,500-year time transect of 30 ancient genomes and stable isotope values from the Suzdal region in the Volga-Oka interfluve. We describe a previously unsampled local Iron Age population and a gradual genetic turnover in the following centuries. Our time transect captures the population shift associated with the spread of Slavic languages and illustrates the ethnically mixed state of medieval Suzdal principality, eventually leading to the formation of the admixed but fully Slavic-speaking population that inhabits the area today. We also observe genetic outliers that highlight the importance of the Suzdal region in medieval times as a hub of long-reaching contacts via trade and warfare.} +} diff --git a/2023_Peltola_VolgaOka/2023_Peltola_VolgaOka.bim b/2023_Peltola_VolgaOka/2023_Peltola_VolgaOka.bim new file mode 100644 index 00000000..494de19a --- /dev/null +++ b/2023_Peltola_VolgaOka/2023_Peltola_VolgaOka.bim @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:6086e7a5aacaf732cc4b65fef6894e996e79357692cb9aa650405ce48cdf863c +size 43212957 diff --git a/2023_Peltola_VolgaOka/2023_Peltola_VolgaOka.fam b/2023_Peltola_VolgaOka/2023_Peltola_VolgaOka.fam new file mode 100644 index 00000000..97d8e192 --- /dev/null +++ b/2023_Peltola_VolgaOka/2023_Peltola_VolgaOka.fam @@ -0,0 +1,31 @@ +VolgaOka_MA2 SHE005 0 0 1 -9 +VolgaOka_MA1 SHE006 0 0 2 -9 +VolgaOka_MA2 GOS001 0 0 1 -9 +VolgaOka_MA2 GOS002 0 0 1 -9 +VolgaOka_MA2 SHE007 0 0 1 -9 +SHE008 SHE008 0 0 2 -9 +VolgaOka_MA2 GOS003 0 0 1 -9 +SHE009 SHE009 0 0 1 -9 +VolgaOka_MA1 GOR001 0 0 1 -9 +VolgaOka_IA BOL005 0 0 2 -9 +VolgaOka_H KED001 0 0 2 -9 +KED004 KED004 0 0 2 -9 +SHK SHK002 0 0 1 -9 +SHK SHK001 0 0 1 -9 +VolgaOka_MA1 SHE003 0 0 1 -9 +VolgaOka_H KED003 0 0 2 -9 +VolgaOka_IA BOL002_suzdal 0 0 2 -9 +VolgaOka_H KED002 0 0 2 -9 +SHE002 SHE002 0 0 2 -9 +VolgaOka_MA1 SHE004 0 0 2 -9 +VolgaOka_MA2 SHE001 0 0 1 -9 +BOL006 BOL006 0 0 2 -9 +KBL003 KBL003 0 0 2 -9 +KRS001 KRS001 0 0 2 -9 +VolgaOka_IA BOL007 0 0 2 -9 +VolgaOka_IA BOL003_suzdal 0 0 2 -9 +BOL004 BOL004 0 0 2 -9 +VolgaOka_IA BOL001_suzdal 0 0 2 -9 +VolgaOka_IA BOL009 0 0 2 -9 +VolgaOka_IA BOL008 0 0 2 -9 +VolgaOka_H KBL002 0 0 2 -9 diff --git a/2023_Peltola_VolgaOka/2023_Peltola_VolgaOka.janno b/2023_Peltola_VolgaOka/2023_Peltola_VolgaOka.janno new file mode 100644 index 00000000..74f83890 --- /dev/null +++ b/2023_Peltola_VolgaOka/2023_Peltola_VolgaOka.janno @@ -0,0 +1,32 @@ +Poseidon_ID Genetic_Sex Group_Name Relation_To Relation_Degree Collection_ID Country Location Site Latitude Longitude Date_Type Date_C14_Labnr Date_C14_Uncal_BP Date_C14_Uncal_BP_Err MT_Haplogroup Y_Haplogroup Source_Tissue Nr_Libraries Capture_Type UDG Library_Built Genotype_Ploidy Endogenous Nr_SNPs Coverage_on_Target_SNPs Damage Genetic_Source_Accession_IDs Primary_Contact Publication +SHE005 M VolgaOka_MA2 n/a n/a Grave 5 Russia Ivanovo oblast Shekshovo 9 56.52776 40.17878 C14 Hela-4853 1002 23 HV10 R1a1a pars petrosa 1 1240K minus ss haploid 4.15 147715 0.24 27.9 PRJEB57974 Sanni Peltola PeltolaCurrentBiology2023 +SHE006 F VolgaOka_MA1 SHE002 second Grave 6 Russia Ivanovo oblast Shekshovo 9 56.52776 40.17878 C14 Hela-4854 1028 23 K1a30a n/a pars petrosa 1 1240K minus ss haploid 73.59 623850 1.59 27.7 PRJEB57974 Sanni Peltola PeltolaCurrentBiology2023 +GOS001 M VolgaOka_MA2 n/a n/a Grave 1 Russia Vladimir oblast Gorokhovets Sretensky monastery 56.20692 42.67993 C14 Hela-4850 890 21 I1a1a I2a1b2a1 tooth 1 1240K minus ss haploid 0.49 567598 1.44 22.9 PRJEB57974 Sanni Peltola PeltolaCurrentBiology2023 +GOS002 M VolgaOka_MA2 n/a n/a Grave 2 Russia Vladimir oblast Gorokhovets Sretensky monastery 56.20692 42.67993 C14 Hela-4851 917 23 U3a3 R1a1a1b1a2a tooth 1 1240K minus ss haploid 3.7 398984 0.77 17.5 PRJEB57974 Sanni Peltola PeltolaCurrentBiology2023 +SHE007 M VolgaOka_MA2 n/a n/a Grave 8/1 Russia Ivanovo oblast Shekshovo 9 56.52776 40.17878 C14 Hela-4855 906 21 H49 I2a2 tooth 1 1240K minus ss haploid 4.71 214411 0.37 25.4 PRJEB57974 Sanni Peltola PeltolaCurrentBiology2023 +SHE008 F SHE008 n/a n/a Grave 8/2 Russia Ivanovo oblast Shekshovo 9 56.52776 40.17878 C14 Hela-4856 607 18 H3 n/a pars petrosa 1 1240K minus ss haploid 9.7 300929 0.55 29.6 PRJEB57974 Sanni Peltola PeltolaCurrentBiology2023 +GOS003 M VolgaOka_MA2 n/a n/a Grave 4 Russia Vladimir oblast Gorokhovets Sretensky monastery 56.20692 42.67993 C14 Hela-4852 973 23 I1a1 K tooth 1 1240K minus ss haploid 24.6 152855 0.25 16 PRJEB57974 Sanni Peltola PeltolaCurrentBiology2023 +SHE009 M SHE009 n/a n/a Grave 10 Russia Ivanovo oblast Shekshovo 9 56.52776 40.17878 C14 Hela-4857 622 18 U2e1b1 R1a1a1b1a1 pars petrosa 1 1240K minus ss haploid 36.94 640159 1.61 28.7 PRJEB57974 Sanni Peltola PeltolaCurrentBiology2023 +GOR001 M VolgaOka_MA1 n/a n/a Grave 1 Russia Vladimir oblast Gorokhovets Puzhalova gora 56.20692 42.67993 C14 Hela-4849 1169 18 K1c1h R1a1a1b1a1b1 tooth 1 1240K minus ss haploid 65.31 637964 1.66 20.8 PRJEB57974 Sanni Peltola PeltolaCurrentBiology2023 +BOL005 F VolgaOka_IA n/a n/a Grave 9 Russia Ivanovo oblast Bolshoye Davydovskoye 2 56.51147 40.21079 C14 MAMS35356 1830 18 V7a1 n/a pars petrosa 1 1240K half ds haploid 78.09 570643 0.83 10.9 PRJEB57974 Sanni Peltola PeltolaCurrentBiology2023 +KED001 F VolgaOka_H n/a n/a Grave A Russia Vladimir oblast Kideksha 56.42229 40.52345 C14 MAMS35346 210 18 H24a n/a tooth 1 1240K half ds haploid 10.7 864440 1.87 1.4 PRJEB57974 Sanni Peltola PeltolaCurrentBiology2023 +KED004 F KED004 n/a n/a Grave D Russia Vladimir oblast Kideksha 56.42229 40.52345 C14 MAMS35349 528 16 F2e n/a tooth 1 1240K half ds haploid 6.42 790498 1.51 2.9 PRJEB57974 Sanni Peltola PeltolaCurrentBiology2023 +SHK002 M SHK n/a n/a Grave 2 Russia Ivanovo oblast Shekshovo 2 56.52776 40.17878 C14 MAMS35365 882 16 Z3c N1 tooth 1 1240K half ds haploid 11.26 322369 0.35 3 PRJEB57974 Sanni Peltola PeltolaCurrentBiology2023 +SHK001 M SHK n/a n/a Grave 1 Russia Ivanovo oblast Shekshovo 2 56.52776 40.17878 C14 MAMS35364 845 16 M9a1a J2a tooth 1 1240K half ds haploid 0.1 558063 0.77 4.7 PRJEB57974 Sanni Peltola PeltolaCurrentBiology2023 +SHE003 M VolgaOka_MA1 n/a n/a Grave 7 Russia Ivanovo oblast Shekshovo 9 56.52776 40.17878 C14 MAMS35368 1185 16 U5a2a1b G2a2b1a pars petrosa 1 1240K half ds haploid 0.16 751786 1.45 11.3 PRJEB57974 Sanni Peltola PeltolaCurrentBiology2023 +KED003 F VolgaOka_H n/a n/a Grave C Russia Vladimir oblast Kideksha 56.42229 40.52345 C14 MAMS35348 266 17 I1a1a3a n/a tooth 1 1240K half ds haploid 55.05 922753 2.14 2 PRJEB57974 Sanni Peltola PeltolaCurrentBiology2023 +BOL002_suzdal F VolgaOka_IA BOL004 first Grave 3-1 Russia Ivanovo oblast Bolshoye Davydovskoye 2 56.51147 40.21079 C14 MAMS35353 1853 17 U4c1 n/a pars petrosa 1 1240K half ds haploid 41.83 875813 3.51 8.1 PRJEB57974 Sanni Peltola PeltolaCurrentBiology2023 +KED002 F VolgaOka_H n/a n/a Grave B Russia Vladimir oblast Kideksha 56.42229 40.52345 C14 MAMS35347 188 18 H50 n/a tooth 1 1240K half ds haploid 7.77 607137 0.84 1.3 PRJEB57974 Sanni Peltola PeltolaCurrentBiology2023 +SHE002 F SHE002 SHE006 second Grave 5 Russia Ivanovo oblast Shekshovo 9 56.52776 40.17878 C14 MAMS35367 1032 16 n/a n/a tooth 1 1240K half ds haploid 40.69 61539 0.06 8.8 PRJEB57974 Sanni Peltola PeltolaCurrentBiology2023 +SHE004 F VolgaOka_MA1 n/a n/a Grave 12 Russia Ivanovo oblast Shekshovo 9 56.52776 40.17878 C14 MAMS35369 1123 17 H6a1a4 n/a pars petrosa 1 1240K half ds haploid 3.85 852461 2.7 9.7 PRJEB57974 Sanni Peltola PeltolaCurrentBiology2023 +SHE001 M VolgaOka_MA2 n/a n/a Grave 2 Russia Ivanovo oblast Shekshovo 9 56.52776 40.17877 C14 MAMS35366 1133 17 U5a1d1 E1b1b1a1b1 tooth 1 1240K half ds haploid 13.41 97875 0.09 10 PRJEB57974 Sanni Peltola PeltolaCurrentBiology2023 +BOL006 F BOL006 n/a n/a Grave 15 Russia Ivanovo oblast Bolshoye Davydovskoye 2 56.51147 40.21079 C14 MAMS35357 1850 17 T2g n/a pars petrosa 1 1240K half ds haploid 46.97 805938 2.38 11.4 PRJEB57974 Sanni Peltola PeltolaCurrentBiology2023 +KBL003 F KBL003 n/a n/a Grave 4-2 Russia Vladimir oblast Kibol 3 56.44289 40.38474 C14 MAMS35363 222 16 U5b1b1a n/a tooth 1 1240K half ds haploid 2.57 301255 0.31 2.9 PRJEB57974 Sanni Peltola PeltolaCurrentBiology2023 +KRS001 F KRS001 n/a n/a Grave 3 Russia Vladimir oblast Krasnoe 3 56.49877 40.54238 C14 MAMS35361 492 16 T1a n/a tooth 1 1240K half ds haploid 0.91 942436 3.41 6.1 PRJEB57974 Sanni Peltola PeltolaCurrentBiology2023 +BOL007 F VolgaOka_IA n/a n/a Grave 17 Russia Ivanovo oblast Bolshoye Davydovskoye 2 56.51147 40.21079 C14 MAMS35358 1680 21 H5 n/a pars petrosa 1 1240K half ds haploid 65.04 892710 3.21 8.3 PRJEB57974 Sanni Peltola PeltolaCurrentBiology2023 +BOL003_suzdal F VolgaOka_IA BOL004 second Grave 3-5 Russia Ivanovo oblast Bolshoye Davydovskoye 2 56.51147 40.21079 C14 MAMS35354 1773 17 H5a1a n/a tooth 1 1240K half ds haploid 1.23 113436 0.11 9.4 PRJEB57974 Sanni Peltola PeltolaCurrentBiology2023 +BOL004 F BOL004 BOL002;BOL003 first;second Grave 6 Russia Ivanovo oblast Bolshoye Davydovskoye 2 56.51147 40.21079 C14 MAMS35355 1804 17 U4c1 n/a pars petrosa 1 1240K half ds haploid 74.03 674804 1.25 5.9 PRJEB57974 Sanni Peltola PeltolaCurrentBiology2023 +BOL001_suzdal F VolgaOka_IA n/a n/a Grave 2 Russia Ivanovo oblast Bolshoye Davydovskoye 2 56.51147 40.21079 C14 MAMS35352 1768 17 H11a2 n/a pars petrosa 1 1240K half ds haploid 6.14 454567 0.72 6.3 PRJEB57974 Sanni Peltola PeltolaCurrentBiology2023 +BOL009 F VolgaOka_IA n/a n/a Grave 20 Russia Ivanovo oblast Bolshoye Davydovskoye 2 56.51147 40.21079 C14 MAMS35360 1766 17 H28a n/a pars petrosa 1 1240K half ds haploid 41.35 876151 3.08 9.5 PRJEB57974 Sanni Peltola PeltolaCurrentBiology2023 +BOL008 F VolgaOka_IA n/a n/a Grave 18 Russia Ivanovo oblast Bolshoye Davydovskoye 2 56.51147 40.21079 C14 MAMS35359 1780 17 H13a2b2a n/a pars petrosa 1 1240K half ds haploid 50.48 917560 3.37 7.9 PRJEB57974 Sanni Peltola PeltolaCurrentBiology2023 +KBL002 F VolgaOka_H n/a n/a Grave 4-1 Russia Vladimir oblast Kibol 3 56.44289 40.38474 C14 MAMS35351 168 16 J1c3 n/a pars petrosa 1 1240K half ds haploid 48.22 940654 4.03 5.9 PRJEB57974 Sanni Peltola PeltolaCurrentBiology2023 diff --git a/2023_Peltola_VolgaOka/POSEIDON.yml b/2023_Peltola_VolgaOka/POSEIDON.yml new file mode 100644 index 00000000..66ae64b4 --- /dev/null +++ b/2023_Peltola_VolgaOka/POSEIDON.yml @@ -0,0 +1,21 @@ +poseidonVersion: 2.7.1 +title: 2023_Peltola_VolgaOka +description: Genetic admixture and language shift in the medieval Volga-Oka interfluve +contributor: +- name: Sanni Peltola + email: sanni.peltola@helsinki.fi +packageVersion: 1.0.0 +lastModified: 2022-12-15 +genotypeData: + format: PLINK + genoFile: 2023_Peltola_VolgaOka.bed + genoFileChkSum: 2ab24d1c0f5cf7946d5a2f9dc115d2a2 + snpFile: 2023_Peltola_VolgaOka.bim + snpFileChkSum: 50f8b2a49d819a3ee13e79f06bd70ff1 + indFile: 2023_Peltola_VolgaOka.fam + indFileChkSum: 69c3ce7fb648c10adcae4f8d10cbafb4 + snpSet: 1240K +jannoFile: 2023_Peltola_VolgaOka.janno +jannoFileChkSum: 9b2c20479d92bebca6e627479f475dda +bibFile: 2023_Peltola_VolgaOka.bib +bibFileChkSum: 2262b38bb4e5d8bfff2353fdbcb5bd20