diff --git a/2019_Haber_Crusaders/CHANGELOG.md b/2019_Haber_Crusaders/CHANGELOG.md index 7aacc146..a4a1e6fb 100644 --- a/2019_Haber_Crusaders/CHANGELOG.md +++ b/2019_Haber_Crusaders/CHANGELOG.md @@ -1,3 +1,4 @@ +- V 2.2.0: Linked Sequencing Source Dile to the .Janno file - V 2.1.0: Update of references in the .bib file - V 2.0.1: Genetic_Source_Accession_IDs added - V 2.0.0: updated the package to Poseidon v2.5 and adjusted the .janno file accordingly diff --git a/2019_Haber_Crusaders/ENAtable.ssf b/2019_Haber_Crusaders/ENAtable.ssf new file mode 100644 index 00000000..ea205ee7 --- /dev/null +++ b/2019_Haber_Crusaders/ENAtable.ssf @@ -0,0 +1,117 @@ +sample_accession study_accession run_accession sample_alias secondary_sample_accession poseidon_IDs first_public last_updated instrument_model library_layout library_source instrument_platform library_name library_strategy fastq_aspera fastq_bytes fastq_md5 fastq_ftp read_count submitted_ftp +SAMEA5382976 PRJEB31618 ERR3210400 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NT1105011R WGS fasp.sra.ebi.ac.uk:/vol1/fastq/ERR321/000/ERR3210430/ERR3210430_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR321/000/ERR3210430/ERR3210430_2.fastq.gz 588587732;604687386 0cbb7932e9aa33b989747ae5c3d67ef4;99e18d4164782b52402de1aa57b8258b ftp.sra.ebi.ac.uk/vol1/fastq/ERR321/000/ERR3210430/ERR3210430_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR321/000/ERR3210430/ERR3210430_2.fastq.gz 22045110 ftp.sra.ebi.ac.uk/vol1/run/ERR321/ERR3210430/23169_2#8.cram +SAMEA5382984 PRJEB31618 ERR3210431 da19d106-5c0d-11e7-86e3-68b599768938 ERS3189357 SI-47.SG 2019-04-16 2019-03-11 Illumina HiSeq 2500 PAIRED GENOMIC ILLUMINA NT1105013T WGS fasp.sra.ebi.ac.uk:/vol1/fastq/ERR321/001/ERR3210431/ERR3210431_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR321/001/ERR3210431/ERR3210431_2.fastq.gz 769773354;791801040 61717721bff1c2d6bbc22f4b9a137c19;88e042a5f77c2688c18ef9238c294a93 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NT1105005T WGS fasp.sra.ebi.ac.uk:/vol1/fastq/ERR321/003/ERR3210433/ERR3210433_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR321/003/ERR3210433/ERR3210433_2.fastq.gz 739445488;776378003 a1be47e8a444fcd53d1905ffd55d0f9d;48f2c4979ac1c06cd999b075fcb685b6 ftp.sra.ebi.ac.uk/vol1/fastq/ERR321/003/ERR3210433/ERR3210433_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR321/003/ERR3210433/ERR3210433_2.fastq.gz 28415150 ftp.sra.ebi.ac.uk/vol1/run/ERR321/ERR3210433/23170_1#2.cram +SAMEA5382978 PRJEB31618 ERR3210434 d9f140ba-5c0d-11e7-86e3-68b599768938 ERS3189351 SI-40.SG 2019-04-16 2019-03-11 Illumina HiSeq 2500 PAIRED GENOMIC ILLUMINA NT1105006U WGS fasp.sra.ebi.ac.uk:/vol1/fastq/ERR321/004/ERR3210434/ERR3210434_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR321/004/ERR3210434/ERR3210434_2.fastq.gz 787584062;815309229 f6a06afe2f60c350fa020fa0d5452724;37661d5df708e8cc23f2a97da48107d1 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NT1105008W WGS fasp.sra.ebi.ac.uk:/vol1/fastq/ERR321/006/ERR3210436/ERR3210436_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR321/006/ERR3210436/ERR3210436_2.fastq.gz 470149074;490069364 3ce6602dcf6e05eccca84927b7c10833;0bba33bbac788bc8239b8c9d5af44b75 ftp.sra.ebi.ac.uk/vol1/fastq/ERR321/006/ERR3210436/ERR3210436_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR321/006/ERR3210436/ERR3210436_2.fastq.gz 18528142 ftp.sra.ebi.ac.uk/vol1/run/ERR321/ERR3210436/23170_1#5.cram +SAMEA5382975 PRJEB31618 ERR3210437 da086272-5c0d-11e7-86e3-68b599768938 ERS3189348 SI-44.SG 2019-04-16 2019-03-11 Illumina HiSeq 2500 PAIRED GENOMIC ILLUMINA NT1105010Q WGS fasp.sra.ebi.ac.uk:/vol1/fastq/ERR321/007/ERR3210437/ERR3210437_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR321/007/ERR3210437/ERR3210437_2.fastq.gz 712010417;739839610 62a4fadbe0134b7948e12fbebf12e295;740bae96297f385593d3181f30be53ea 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NT1105013T WGS fasp.sra.ebi.ac.uk:/vol1/fastq/ERR321/009/ERR3210439/ERR3210439_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR321/009/ERR3210439/ERR3210439_2.fastq.gz 752259881;772660639 f1694b8da616126d780b7c6e23cebad6;ee3ff23116f5580f17a891b190cc6c35 ftp.sra.ebi.ac.uk/vol1/fastq/ERR321/009/ERR3210439/ERR3210439_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR321/009/ERR3210439/ERR3210439_2.fastq.gz 29524128 ftp.sra.ebi.ac.uk/vol1/run/ERR321/ERR3210439/23170_1#9.cram +SAMEA5382976 PRJEB31618 ERR3210440 d9e2e86c-5c0d-11e7-86e3-68b599768938 ERS3189349 SI-38.SG 2019-04-16 2019-03-11 Illumina HiSeq 2500 PAIRED GENOMIC ILLUMINA NT1105004S WGS fasp.sra.ebi.ac.uk:/vol1/fastq/ERR321/000/ERR3210440/ERR3210440_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR321/000/ERR3210440/ERR3210440_2.fastq.gz 611098530;642163512 74a426a1f355f2dec2fa42f15d3534f4;1787e11b7299b8c498b8948ff235845c 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NT1105011R WGS fasp.sra.ebi.ac.uk:/vol1/fastq/ERR321/000/ERR3210460/ERR3210460_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR321/000/ERR3210460/ERR3210460_2.fastq.gz 14196315997;15644151448 ce9abdcf47301280abbd7db05b0abee5;569c52493491992cc6d42ed0b154be4f ftp.sra.ebi.ac.uk/vol1/fastq/ERR321/000/ERR3210460/ERR3210460_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR321/000/ERR3210460/ERR3210460_2.fastq.gz 796318020 ftp.sra.ebi.ac.uk/vol1/run/ERR321/ERR3210460/24551_5.cram +SAMEA5382982 PRJEB31618 ERR3210461 da0e10e6-5c0d-11e7-86e3-68b599768938 ERS3189355 SI-45.SG 2019-04-16 2019-03-11 Illumina HiSeq 4000 PAIRED GENOMIC ILLUMINA NT1105011R WGS fasp.sra.ebi.ac.uk:/vol1/fastq/ERR321/001/ERR3210461/ERR3210461_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR321/001/ERR3210461/ERR3210461_2.fastq.gz 14173197484;15506862056 555ccc5e19a20ab11fcba679ab22df41;8d9e6f749ae0dcd0a1b6752fb8e6f968 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ILLUMINA NT1105007V WGS fasp.sra.ebi.ac.uk:/vol1/fastq/ERR321/006/ERR3210466/ERR3210466_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR321/006/ERR3210466/ERR3210466_2.fastq.gz 13842436167;15165956805 76fec8fc66238d8adefbc29c6738bdb6;9f6161e1c09388c88bfeb1fcc990352d ftp.sra.ebi.ac.uk/vol1/fastq/ERR321/006/ERR3210466/ERR3210466_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR321/006/ERR3210466/ERR3210466_2.fastq.gz 741151184 ftp.sra.ebi.ac.uk/vol1/run/ERR321/ERR3210466/24694_2#1.cram +SAMEA5382977 PRJEB31618 ERR3210467 d9ebcc5c-5c0d-11e7-86e3-68b599768938 ERS3189350 SI-39.SG 2019-04-16 2019-03-11 Illumina HiSeq 4000 PAIRED GENOMIC ILLUMINA NT1105005T WGS fasp.sra.ebi.ac.uk:/vol1/fastq/ERR321/007/ERR3210467/ERR3210467_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR321/007/ERR3210467/ERR3210467_2.fastq.gz 13484066468;15121137416 16226c8b30c185f2a1039a917c5f2f2c;10f033f22ba6083cbf9d7c70df1b255c 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NT1254804A WGS fasp.sra.ebi.ac.uk:/vol1/fastq/ERR321/009/ERR3210469/ERR3210469_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR321/009/ERR3210469/ERR3210469_2.fastq.gz 452872367;458254963 f6481da21f5f75b28b4e0abd6151ac34;33af5ae19b36b08d94d350de23bc18e3 ftp.sra.ebi.ac.uk/vol1/fastq/ERR321/009/ERR3210469/ERR3210469_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR321/009/ERR3210469/ERR3210469_2.fastq.gz 19643762 ftp.sra.ebi.ac.uk/vol1/run/ERR321/ERR3210469/24765_1#4.cram +SAMEA5382962 PRJEB31618 ERR3210470 4f13e248-e3e1-11e7-9a7d-68b59976a384 ERS3189335 QED-4.SG 2019-04-16 2019-03-11 Illumina HiSeq 2500 PAIRED GENOMIC ILLUMINA NT1254806C WGS fasp.sra.ebi.ac.uk:/vol1/fastq/ERR321/000/ERR3210470/ERR3210470_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR321/000/ERR3210470/ERR3210470_2.fastq.gz 439105435;446205039 a48251016cf2f2e78393ca3f5f76ca2c;bb30b4485d76d65e0576243c97dd9824 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NT1254810V WGS fasp.sra.ebi.ac.uk:/vol1/fastq/ERR321/002/ERR3210472/ERR3210472_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR321/002/ERR3210472/ERR3210472_2.fastq.gz 461471881;466616839 4a977fe585e4f313923a0be76dcc9492;ae2fbf5f4c5658845773414c5de3f64a ftp.sra.ebi.ac.uk/vol1/fastq/ERR321/002/ERR3210472/ERR3210472_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR321/002/ERR3210472/ERR3210472_2.fastq.gz 19991136 ftp.sra.ebi.ac.uk/vol1/run/ERR321/ERR3210472/24765_1#10.cram +SAMEA5382969 PRJEB31618 ERR3210473 4f657194-e3e1-11e7-9a7d-68b59976a384 ERS3189342 QED-12.SG 2019-04-16 2019-03-11 Illumina HiSeq 2500 PAIRED GENOMIC ILLUMINA NT1254813B WGS fasp.sra.ebi.ac.uk:/vol1/fastq/ERR321/003/ERR3210473/ERR3210473_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR321/003/ERR3210473/ERR3210473_2.fastq.gz 335033353;333237513 415f502e464618b075dce8d4d7544ffb;9f873e01499f3ee32645e724733265d7 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NT1254804A WGS fasp.sra.ebi.ac.uk:/vol1/fastq/ERR321/005/ERR3210475/ERR3210475_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR321/005/ERR3210475/ERR3210475_2.fastq.gz 431318104;439310129 6ee0126f4a0aaa0aafa41baed75f214b;7462ac0ee7963a02b277d85ed85e1537 ftp.sra.ebi.ac.uk/vol1/fastq/ERR321/005/ERR3210475/ERR3210475_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR321/005/ERR3210475/ERR3210475_2.fastq.gz 18986162 ftp.sra.ebi.ac.uk/vol1/run/ERR321/ERR3210475/24765_2#4.cram +SAMEA5382962 PRJEB31618 ERR3210476 4f13e248-e3e1-11e7-9a7d-68b59976a384 ERS3189335 QED-4.SG 2019-04-16 2019-03-11 Illumina HiSeq 2500 PAIRED GENOMIC ILLUMINA NT1254806C WGS fasp.sra.ebi.ac.uk:/vol1/fastq/ERR321/006/ERR3210476/ERR3210476_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR321/006/ERR3210476/ERR3210476_2.fastq.gz 418379495;427537390 590f8bfb413d16c3a3de368e51c95d3e;afc8962957fc40213cf68535df66172a 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NT1254810V WGS fasp.sra.ebi.ac.uk:/vol1/fastq/ERR321/008/ERR3210478/ERR3210478_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR321/008/ERR3210478/ERR3210478_2.fastq.gz 438489101;446063407 b824a56eb4b7fa277e50159e5262c68e;017722ca89a3132a2429afd6900e2da1 ftp.sra.ebi.ac.uk/vol1/fastq/ERR321/008/ERR3210478/ERR3210478_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR321/008/ERR3210478/ERR3210478_2.fastq.gz 19225162 ftp.sra.ebi.ac.uk/vol1/run/ERR321/ERR3210478/24765_2#10.cram +SAMEA5382969 PRJEB31618 ERR3210479 4f657194-e3e1-11e7-9a7d-68b59976a384 ERS3189342 QED-12.SG 2019-04-16 2019-03-11 Illumina HiSeq 2500 PAIRED GENOMIC ILLUMINA NT1254813B WGS fasp.sra.ebi.ac.uk:/vol1/fastq/ERR321/009/ERR3210479/ERR3210479_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR321/009/ERR3210479/ERR3210479_2.fastq.gz 321106319;321636211 92f7448d5ffb6d01faedfc45a2564c78;7293f09b72d7214065b5af14b7982906 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NT1254804A WGS fasp.sra.ebi.ac.uk:/vol1/fastq/ERR321/001/ERR3210481/ERR3210481_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR321/001/ERR3210481/ERR3210481_2.fastq.gz 620325498;631237533 e18a299b51617b8b7b19d68226a42f32;6020ea75997601f2c2cd4b96c4938706 ftp.sra.ebi.ac.uk/vol1/fastq/ERR321/001/ERR3210481/ERR3210481_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR321/001/ERR3210481/ERR3210481_2.fastq.gz 25234462 ftp.sra.ebi.ac.uk/vol1/run/ERR321/ERR3210481/24799_1#4.cram +SAMEA5382962 PRJEB31618 ERR3210482 4f13e248-e3e1-11e7-9a7d-68b59976a384 ERS3189335 QED-4.SG 2019-04-16 2019-03-11 Illumina HiSeq 2500 PAIRED GENOMIC ILLUMINA NT1254806C WGS fasp.sra.ebi.ac.uk:/vol1/fastq/ERR321/002/ERR3210482/ERR3210482_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR321/002/ERR3210482/ERR3210482_2.fastq.gz 597226247;612314503 ee631a7d56e75f1b403f258cd4b19941;8efca3cfcb2a9c667d65a8ab11653a77 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NT1254804A WGS fasp.sra.ebi.ac.uk:/vol1/fastq/ERR321/007/ERR3210487/ERR3210487_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR321/007/ERR3210487/ERR3210487_2.fastq.gz 643010365;653778657 1065557796f4a98bd52941cd3bc908d9;f010d863f4be64629816fe60f0d8857f ftp.sra.ebi.ac.uk/vol1/fastq/ERR321/007/ERR3210487/ERR3210487_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR321/007/ERR3210487/ERR3210487_2.fastq.gz 25877554 ftp.sra.ebi.ac.uk/vol1/run/ERR321/ERR3210487/24799_2#4.cram +SAMEA5382962 PRJEB31618 ERR3210488 4f13e248-e3e1-11e7-9a7d-68b59976a384 ERS3189335 QED-4.SG 2019-04-16 2019-03-11 Illumina HiSeq 2500 PAIRED GENOMIC ILLUMINA NT1254806C WGS fasp.sra.ebi.ac.uk:/vol1/fastq/ERR321/008/ERR3210488/ERR3210488_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR321/008/ERR3210488/ERR3210488_2.fastq.gz 618788730;635501648 282252672ea4cfcbd550ace6b2b7d1e5;ca37097354feff5b2ab7e84b651a74d0 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NT1254804A WGS fasp.sra.ebi.ac.uk:/vol1/fastq/ERR321/003/ERR3210493/ERR3210493_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR321/003/ERR3210493/ERR3210493_2.fastq.gz 617178040;624982592 314aa41e375d057ae2cc93173f059393;5a436fcf8c91cae7f8dbbdbd2497fecc ftp.sra.ebi.ac.uk/vol1/fastq/ERR321/003/ERR3210493/ERR3210493_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR321/003/ERR3210493/ERR3210493_2.fastq.gz 25142654 ftp.sra.ebi.ac.uk/vol1/run/ERR321/ERR3210493/24800_1#4.cram +SAMEA5382962 PRJEB31618 ERR3210494 4f13e248-e3e1-11e7-9a7d-68b59976a384 ERS3189335 QED-4.SG 2019-04-16 2019-03-11 Illumina HiSeq 2500 PAIRED GENOMIC ILLUMINA NT1254806C WGS fasp.sra.ebi.ac.uk:/vol1/fastq/ERR321/004/ERR3210494/ERR3210494_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR321/004/ERR3210494/ERR3210494_2.fastq.gz 594787993;606295662 56f6e90ef5534abfc6ea4e5614e2e3c8;0c394c476735296db7643a01b58ede34 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NT1254810V WGS fasp.sra.ebi.ac.uk:/vol1/fastq/ERR321/006/ERR3210496/ERR3210496_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR321/006/ERR3210496/ERR3210496_2.fastq.gz 630966529;638125793 edd97889f52820bc1876821f4f06494a;97892213e0955feb8375e4192b787c5c ftp.sra.ebi.ac.uk/vol1/fastq/ERR321/006/ERR3210496/ERR3210496_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR321/006/ERR3210496/ERR3210496_2.fastq.gz 25812924 ftp.sra.ebi.ac.uk/vol1/run/ERR321/ERR3210496/24800_1#10.cram +SAMEA5382969 PRJEB31618 ERR3210497 4f657194-e3e1-11e7-9a7d-68b59976a384 ERS3189342 QED-12.SG 2019-04-16 2019-03-11 Illumina HiSeq 2500 PAIRED GENOMIC ILLUMINA NT1254813B WGS fasp.sra.ebi.ac.uk:/vol1/fastq/ERR321/007/ERR3210497/ERR3210497_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR321/007/ERR3210497/ERR3210497_2.fastq.gz 458638553;459813745 8ec4f75dbbdd098151a4c1f80b3eee62;27b6cc66f58daf5b606c61a979766c50 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NT1254804A WGS fasp.sra.ebi.ac.uk:/vol1/fastq/ERR321/009/ERR3210499/ERR3210499_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR321/009/ERR3210499/ERR3210499_2.fastq.gz 613686955;623275042 af2f0ac709cb58ac113fb04362a2b5b5;c840d21ddb290e1a36fe6d1fff937e94 ftp.sra.ebi.ac.uk/vol1/fastq/ERR321/009/ERR3210499/ERR3210499_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR321/009/ERR3210499/ERR3210499_2.fastq.gz 25151828 ftp.sra.ebi.ac.uk/vol1/run/ERR321/ERR3210499/24800_2#4.cram +SAMEA5382962 PRJEB31618 ERR3210500 4f13e248-e3e1-11e7-9a7d-68b59976a384 ERS3189335 QED-4.SG 2019-04-16 2019-03-11 Illumina HiSeq 2500 PAIRED GENOMIC ILLUMINA NT1254806C WGS fasp.sra.ebi.ac.uk:/vol1/fastq/ERR321/000/ERR3210500/ERR3210500_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR321/000/ERR3210500/ERR3210500_2.fastq.gz 591467040;604403643 eb071aefaf423e3c8800f3aa61db5a9f;55c1208a0bdac70a750aec265f4f9e43 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NT1254810V WGS fasp.sra.ebi.ac.uk:/vol1/fastq/ERR321/002/ERR3210502/ERR3210502_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR321/002/ERR3210502/ERR3210502_2.fastq.gz 627522096;636335539 348e0f1a51ab43f70e8b356b439c25c0;c601ece116fb57b89fd125de6c798a16 ftp.sra.ebi.ac.uk/vol1/fastq/ERR321/002/ERR3210502/ERR3210502_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR321/002/ERR3210502/ERR3210502_2.fastq.gz 25785124 ftp.sra.ebi.ac.uk/vol1/run/ERR321/ERR3210502/24800_2#10.cram +SAMEA5382969 PRJEB31618 ERR3210503 4f657194-e3e1-11e7-9a7d-68b59976a384 ERS3189342 QED-12.SG 2019-04-16 2019-03-11 Illumina HiSeq 2500 PAIRED GENOMIC ILLUMINA NT1254813B WGS fasp.sra.ebi.ac.uk:/vol1/fastq/ERR321/003/ERR3210503/ERR3210503_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR321/003/ERR3210503/ERR3210503_2.fastq.gz 456954360;459401292 7cc491870bcfbb5a37d76c02429a89cb;3424befd3f50d150b61eeacc1140920a 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ILLUMINA NT1254806C WGS fasp.sra.ebi.ac.uk:/vol1/fastq/ERR321/005/ERR3210505/ERR3210505_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR321/005/ERR3210505/ERR3210505_2.fastq.gz 11930592343;12658133364 2c5ecf924e0393fdc6afa265c9b59f56;9be1539d8aa1dfc180fbcf8dc3091285 ftp.sra.ebi.ac.uk/vol1/fastq/ERR321/005/ERR3210505/ERR3210505_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR321/005/ERR3210505/ERR3210505_2.fastq.gz 755724612 ftp.sra.ebi.ac.uk/vol1/run/ERR321/ERR3210505/25101_2#1.cram +SAMEA5382965 PRJEB31618 ERR3210506 4f372cee-e3e1-11e7-9a7d-68b59976a384 ERS3189338 QED-7.SG 2019-04-16 2019-03-11 Illumina HiSeq 4000 PAIRED GENOMIC ILLUMINA NT1254809F WGS fasp.sra.ebi.ac.uk:/vol1/fastq/ERR321/006/ERR3210506/ERR3210506_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR321/006/ERR3210506/ERR3210506_2.fastq.gz 12417887339;13014731180 484d40573f8ad0b615720eb0a386777d;0587b92f7eedf6a717be46ffcb2e7494 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ILLUMINA NT1254814C WGS fasp.sra.ebi.ac.uk:/vol1/fastq/ERR321/001/ERR3210511/ERR3210511_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR321/001/ERR3210511/ERR3210511_2.fastq.gz 11997123139;11785041085 3afde1f7a415f7cf1030d65171110809;cbd587bb42b553c694a196d22cf16723 ftp.sra.ebi.ac.uk/vol1/fastq/ERR321/001/ERR3210511/ERR3210511_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR321/001/ERR3210511/ERR3210511_2.fastq.gz 717526862 ftp.sra.ebi.ac.uk/vol1/run/ERR321/ERR3210511/25572_1#1.cram +SAMEA5382977 PRJEB31618 ERR3210512 d9ebcc5c-5c0d-11e7-86e3-68b599768938 ERS3189350 SI-39.SG 2019-04-16 2019-03-11 Illumina HiSeq 4000 PAIRED GENOMIC ILLUMINA NT1105005T WGS fasp.sra.ebi.ac.uk:/vol1/fastq/ERR321/002/ERR3210512/ERR3210512_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR321/002/ERR3210512/ERR3210512_2.fastq.gz 13905977069;14890700440 b82423bfc83b43a42ca2b14cdb99a714;43ae5f7bd85fda303ab84c4472bfabcc 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ILLUMINA NT1105011R WGS fasp.sra.ebi.ac.uk:/vol1/fastq/ERR321/004/ERR3210514/ERR3210514_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR321/004/ERR3210514/ERR3210514_2.fastq.gz 14559669686;15663736296 575198c3c24fb59bd51af857baecbd13;0dccd3c73d513bde6fbf9cd6bea35b77 ftp.sra.ebi.ac.uk/vol1/fastq/ERR321/004/ERR3210514/ERR3210514_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR321/004/ERR3210514/ERR3210514_2.fastq.gz 770932744 ftp.sra.ebi.ac.uk/vol1/run/ERR321/ERR3210514/25573_3#1.cram +SAMEA5382970 PRJEB31618 ERR3210515 4f712958-e3e1-11e7-9a7d-68b59976a384 ERS3189343 SI-53.SG 2019-04-16 2019-03-11 Illumina HiSeq 4000 PAIRED GENOMIC ILLUMINA NT1254814C WGS fasp.sra.ebi.ac.uk:/vol1/fastq/ERR321/005/ERR3210515/ERR3210515_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR321/005/ERR3210515/ERR3210515_2.fastq.gz 13187472489;13428507588 09fa1d302341582329a1487976485358;5cfcf04b521940e82bdbd1b8495344b8 ftp.sra.ebi.ac.uk/vol1/fastq/ERR321/005/ERR3210515/ERR3210515_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR321/005/ERR3210515/ERR3210515_2.fastq.gz 787355096 ftp.sra.ebi.ac.uk/vol1/run/ERR321/ERR3210515/25573_4#1.cram diff --git a/2019_Haber_Crusaders/POSEIDON.yml b/2019_Haber_Crusaders/POSEIDON.yml index b30fab28..5d73ec49 100644 --- a/2019_Haber_Crusaders/POSEIDON.yml +++ b/2019_Haber_Crusaders/POSEIDON.yml @@ -5,8 +5,8 @@ description: A Transient Pulse of Genetic Admixture from the Crusaders in the Ne contributor: - name: Ayshin Ghalichi email: ghalichi@shh.mpg.de -packageVersion: 2.1.0 -lastModified: 2023-07-04 +packageVersion: 2.2.0 +lastModified: 2024-01-26 genotypeData: format: PLINK genoFile: Haber_Crusaders.bed @@ -18,6 +18,8 @@ genotypeData: snpSet: 1240K jannoFile: Haber_Crusaders.janno jannoFileChkSum: 2f2a931bf0c08aa3bbf2c58724846520 +sequencingSourceFile: ENAtable.ssf +sequencingSourceFileChkSum: 080d51799cef1d3f8238a9728d08b6c0 bibFile: LITERATURE.bib bibFileChkSum: 2dfc1a5c25efa383814f5d9961ac028b changelogFile: CHANGELOG.md