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BP","n/a","n/a",5184,"3368 - 3100 calBCE","n/a","HV13b","female","Tooth",2,"n/a","Shotgun","minus","ds","n/a","n/a","n/a","n/a","n/a",,,"n/a","n/a","n/a","n/a","n/a","n/a","n/a","n/a" +"sha003","F","Iran_ShahTepe_BA","n/a","n/a","n/a","n/a","n/a","S2, BIII"," Iran","Shahtepe","n/a",37.14918344,54.65098268,"contextual","","","n/a","n/a",5100,"3200 - 3100 BCE","n/a","H14","female","Tooth",2,"n/a","Shotgun","minus","ds","n/a","n/a","n/a","n/a","n/a",,,"n/a","n/a","n/a","n/a","n/a","n/a","n/a","n/a" From 69b2347c4d3521079a073c1f9cc97d24b9684af8 Mon Sep 17 00:00:00 2001 From: dhananjaya93 Date: Thu, 6 Jun 2024 23:41:38 +0200 Subject: [PATCH 3/7] fullgeno validation --- .../2023_Koptekin_SouthwestAsia.bib | 24 ++++--- .../2023_Koptekin_SouthwestAsia.janno | 72 +++++++++---------- 2023_Koptekin_SouthwestAsia/POSEIDON.yml | 16 +++-- 3 files changed, 60 insertions(+), 52 deletions(-) diff --git a/2023_Koptekin_SouthwestAsia/2023_Koptekin_SouthwestAsia.bib b/2023_Koptekin_SouthwestAsia/2023_Koptekin_SouthwestAsia.bib index 4231eb14..269f8507 100644 --- a/2023_Koptekin_SouthwestAsia/2023_Koptekin_SouthwestAsia.bib +++ b/2023_Koptekin_SouthwestAsia/2023_Koptekin_SouthwestAsia.bib @@ -1,12 +1,14 @@ -@article{exampleBibtexKey, - title = {Example Paper}, - author = {Doe, John}, - year = {2018}, - journal = {Example Journal}, - volume = {47}, - issue = {10}, - publisher = {The example society for example research}, - doi = {10.XXXX/ExampleJournal.47.777}, - url = {https://doi.org/10.XXXX/ExampleJournal.47.777}, +@article{2023_Koptekin_SouthwestAsia, + title = {Spatial and temporal heterogeneity in human mobility patterns in Holocene Southwest Asia and the East Mediterranean}, + volume = {33}, + ISSN = {0960-9822}, + url = {http://dx.doi.org/10.1016/j.cub.2022.11.034}, + DOI = {10.1016/j.cub.2022.11.034}, + number = {1}, + journal = {Current Biology}, + publisher = {Elsevier BV}, + author = {Koptekin, Dilek and Y\"{u}nc\"{u}, Eren and Rodríguez-Varela, Ricardo and Altınışık, N. Ezgi and Psonis, Nikolaos and Kashuba, Natalia and Yorulmaz, Sevgi and George, Robert and Kazancı, Duygu Deniz and Kaptan, Damla and G\"{u}r\"{u}n, Kanat and Vural, Kıvılcım Başak and Gemici, Hasan Can and Vassou, Despoina and Daskalaki, Evangelia and Karamurat, Cansu and Lagerholm, Vendela K. and Erdal, \"{O}m\"{u}r Dilek and Kırd\"{o}k, Emrah and Marangoni, Aurelio and Schachner, Andreas and \"{U}st\"{u}ndağ, Handan and Shengelia, Ramaz and Bitadze, Liana and Elashvili, Mikheil and Stravopodi, Eleni and \"{O}zbaşaran, Mihriban and Duru, G\"{u}neş and Nafplioti, Argyro and Rose, C. Brian and Gencer, Tuğba and Darbyshire, Gareth and Gavashelishvili, Alexander and Pitskhelauri, Konstantine and undefinedevik, \"{O}zlem and Vuruşkan, Osman and Kyparissi-Apostolika, Nina and B\"{u}y\"{u}kkarakaya, Ali Metin and Oğuzhanoğlu, Umay and G\"{u}nel, Sevin\c{c} and Tabakaki, Eugenia and Aliev, Akper and Ibrahimov, Anar and Shadlinski, Vaqif and Sampson, Adamantios and Kılın\c{c}, G\"{u}lşah Merve and Atakuman, undefinediğdem and Stamatakis, Alexandros and Poulakakis, Nikos and Erdal, Yılmaz Selim and Pavlidis, Pavlos and Storå, Jan and \"{O}zer, F\"{u}sun and G\"{o}therstr\"{o}m, Anders and Somel, Mehmet}, + year = {2023}, + month = jan, + pages = {41--57.e15} } - diff --git a/2023_Koptekin_SouthwestAsia/2023_Koptekin_SouthwestAsia.janno b/2023_Koptekin_SouthwestAsia/2023_Koptekin_SouthwestAsia.janno index 40d536b2..7e57cd61 100644 --- a/2023_Koptekin_SouthwestAsia/2023_Koptekin_SouthwestAsia.janno +++ b/2023_Koptekin_SouthwestAsia/2023_Koptekin_SouthwestAsia.janno @@ -1,36 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0.002659277",1.00E-06,"n/a","n/a","n/a","n/a","n/a","n/a","n/a" -"G65","F","Greece_Perachora_B","n/a","n/a","n/a","n/a","n/a","ΚΟ 37 / Π1022 ΛΒ Β4, #65_1"," Greece","Perachora","n/a",38.03,22.87,"contextual",,,"n/a","n/a",4400,"2700-2200 BCE","n/a","T2c1d+152","female","Petrous",2,"n/a","Shotgun","mixed","n/a","n/a","n/a","n/a","n/a","n/a",,"n/a",1.00E-06,"n/a","n/a","n/a","n/a","n/a","n/a","n/a" -"G66","F","Greece_Perachora_BA","n/a","n/a","n/a","n/a","n/a","P1008 PB4, #66"," Greece","Perachora","n/a",38.03,22.87,"contextual",,,"n/a","n/a",4400,"2700-2200 BCE","n/a","H","female","Petrous",2,"n/a","Shotgun","mixed","n/a","n/a","n/a","n/a","n/a","n/a",,"n/a",1.00E-06,"n/a","n/a","n/a","n/a","n/a","n/a","n/a" -"G62","M","Greece_Perachora_BA","n/a","n/a","n/a","n/a","n/a","KO 37 / Π920, #62_1; KO 37 / Π920, #62_3"," Greece","Perachora","n/a",38.03,22.87,"contextual",,,"n/a","n/a",4400,"2700-2200 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Relation_Note Collection_ID Country Location Site Latitude Longitude Date_Type Date_C14_Labnr Date_C14_Uncal_BP Date_C14_Uncal_BP_Err Date_BC_AD_Start Date_BC_AD_Median Date_BC_AD_Stop Date_Note MT_Haplogroup Y_Haplogroup Source_Tissue Nr_Libraries Library_Names Capture_Type UDG Library_Built Genotype_Ploidy Data_Preparation_Pipeline_URL Endogenous Nr_SNPs Coverage_on_Target_SNPs Damage Contamination Contamination_Err Contamination_Meas Contamination_Note Genetic_Source_Accession_IDs Primary_Contact Publication Note Keywords Keywords +G31 M Greece_Perachora_BA n/a n/a n/a n/a n/a ΑΠ, #31_6 Greece Perachora n/a 38.03 22.87 n/a n/a n/a n/a n/a n/a n/a n/a J1c2 BT Petrous 37 n/a Shotgun n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a n/a n/a n/a n/a +G65 F Greece_Perachora_B n/a n/a n/a n/a n/a ΚΟ 37 / Π1022 ΛΒ Β4, #65_1 Greece Perachora n/a 38.03 22.87 n/a n/a n/a n/a n/a n/a n/a n/a T2c1d+152 female Petrous 2 n/a Shotgun n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a n/a n/a n/a n/a +G66 F Greece_Perachora_BA n/a n/a n/a n/a n/a P1008 PB4, #66 Greece Perachora n/a 38.03 22.87 n/a n/a n/a n/a n/a n/a n/a n/a H female Petrous 2 n/a Shotgun n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a n/a n/a n/a n/a +G62 M Greece_Perachora_BA n/a n/a n/a n/a n/a KO 37 / Π920, #62_1; KO 37 / Π920, #62_3 Greece Perachora n/a 38.03 22.87 n/a n/a n/a n/a n/a n/a n/a n/a J1c G2a2b2a Petrous 4 n/a Shotgun n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a n/a n/a n/a n/a +G76a F Greece_Perachora_BA n/a n/a n/a n/a n/a KO 37 / Π920, #62_2; Π934α, #76 Greece Perachora n/a 38.03 22.87 n/a n/a n/a n/a n/a n/a n/a n/a T2c1+146 female Petrous, Tooth 6 n/a Shotgun n/a ds n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a n/a n/a n/a n/a +mus006 M Anatolia_Musular_N n/a n/a n/a n/a n/a SK6 Turkey Musular n/a 38.35 34.22 n/a n/a n/a n/a n/a n/a n/a n/a N1a1a1 CT Petrous 3 n/a Shotgun minus ds n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a n/a n/a n/a n/a +geo029 M Georgia_Didnauri_BA n/a n/a n/a n/a n/a N 14 / map number 46 Georgia Didnauri n/a 41.46 46.11 n/a n/a n/a n/a n/a n/a n/a n/a I5c R1b1a2a2 M3 sin mand + Pm1 dex mand 1 n/a Shotgun minus ds n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a n/a n/a n/a n/a +zrj003 M Azerbaijan_Shamakhi_IA n/a n/a n/a n/a n/a '''Shamakhi ''''III''''''' Azerbaijan Shamakhi n/a 40.35 47.76 n/a n/a n/a n/a n/a n/a n/a n/a K1a19 J Tooth 1 n/a Shotgun minus ds n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a n/a n/a n/a n/a +geo005 M Georgia_Didnauri_BA n/a n/a n/a n/a n/a N1 / Shuagori Georgia Didnauri n/a 41.46 46.11 n/a n/a n/a n/a n/a n/a n/a n/a U7b R1b1a2a2 Bone fragment 3 n/a Shotgun minus ds n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a n/a n/a n/a n/a +GOR002 F Anatolia_Gordion_IA n/a n/a n/a n/a n/a YH41500 Turkey Gordion n/a 39.65 31.97 n/a n/a n/a n/a n/a n/a n/a n/a K1a3 female Petrous 2 n/a Shotgun minus ds n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a n/a n/a n/a n/a +geo006 M Georgia_Didnauri_BA n/a n/a n/a n/a n/a N 8A / map number:14 Georgia Didnauri n/a 41.46 46.11 n/a n/a n/a n/a n/a n/a n/a n/a X2 O1b1a2 M max 2 n/a Shotgun minus ds n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a n/a n/a n/a n/a +mus005 F Anatolia_Musular_N n/a n/a n/a n/a n/a SK5 Turkey Musular n/a 38.35 34.22 n/a n/a n/a n/a n/a n/a n/a n/a K1a4 female Petrous 5 n/a Shotgun minus ds n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a n/a n/a n/a n/a +ulu117 F Anatolia_Ulucak_BA n/a n/a n/a n/a n/a M7a Turkey Ulucak n/a 38.48 27.35 n/a n/a n/a n/a n/a n/a n/a n/a J1c11 female Petrous 3 n/a Shotgun minus ds n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a n/a n/a n/a n/a +G37 M Greece_Sarakenos_BA n/a n/a n/a n/a n/a G37 Greece Sarakenos n/a 38.45 23.22 n/a n/a n/a n/a n/a n/a n/a n/a H11a2 J Tooth 3 n/a Shotgun minus ds n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a n/a n/a n/a n/a +gur019 F Georgia_Nazarlebi_BA n/a n/a n/a n/a n/a N19 Georgia Nazarlebi n/a 41.33 46.23 n/a n/a n/a n/a n/a n/a n/a n/a K1a4b female Tooth 2 n/a Shotgun minus ds n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a n/a n/a n/a n/a +G23 M Greece_Theopetra_BA n/a n/a n/a n/a n/a G23 Greece Theopetra n/a 39.68 21.68 n/a n/a n/a n/a n/a n/a n/a n/a H5 I Tooth 4 n/a Shotgun minus ds n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a n/a n/a n/a n/a +sha006 F Iran_ShahTepe_BA n/a n/a n/a n/a n/a S9, EII Iran Shahtepe n/a 37.14918344 54.65098268 n/a n/a n/a n/a n/a n/a n/a n/a J1b1b1 female Tooth 2 n/a Shotgun minus ds n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a n/a n/a n/a n/a +gur017 M Georgia_Nazarlebi_BA n/a n/a n/a n/a n/a N17 Georgia Nazarlebi n/a 41.33 46.23 n/a n/a n/a n/a n/a n/a n/a n/a N1a1a1a I Petrous 2 n/a Shotgun minus ds n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a n/a n/a n/a n/a +geo017 F Georgia_Doghlauri_BA n/a n/a n/a n/a n/a N 93 Georgia Doghlauri n/a 41.68 44.77 n/a n/a n/a n/a n/a n/a n/a n/a H4b female Bone fragment 1 n/a Shotgun minus ds n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a n/a n/a n/a n/a +sha012 M Iran_ShahTepe_BA n/a n/a n/a n/a n/a S21, FIII Iran Shahtepe n/a 37.14918344 54.65098268 n/a n/a n/a n/a n/a n/a n/a n/a U1a3 J Tooth 2 n/a Shotgun minus ds n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a n/a n/a n/a n/a +gur016 M Georgia_Nazarlebi_B n/a n/a n/a n/a n/a N16 Georgia Nazarlebi n/a 41.33 46.23 n/a n/a n/a n/a n/a n/a n/a n/a K A Petrous 2 n/a Shotgun minus ds n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a n/a n/a n/a n/a +geo015 M Georgia_Doghlauri_KuraAraxes_BA n/a n/a n/a n/a n/a N 39 Georgia Doghlauri n/a 41.68 44.77 n/a n/a n/a n/a n/a n/a n/a n/a K1a J2a1b1 Bone fragment 1 n/a Shotgun minus ds n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a n/a n/a n/a n/a +CTG025 F Anatolia_CineTepecik_BA n/a n/a n/a n/a n/a g25 Turkey Çine-Tepecik n/a 37.6 28.01 n/a n/a n/a n/a n/a n/a n/a n/a W6b female Petrous 3 n/a Shotgun minus ds n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a n/a n/a n/a n/a +GOR001 M Anatolia_Gordion_IA n/a n/a n/a n/a n/a YH36611 Turkey Gordion n/a 39.65 31.97 n/a n/a n/a n/a n/a n/a n/a n/a H14a J2a1 Petrous 1 n/a Shotgun minus ds n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a n/a n/a n/a n/a +sha004 M Iran_ShahTepe_BA n/a n/a n/a n/a n/a S4, BIII Iran Shahtepe n/a 37.14918344 54.65098268 n/a n/a n/a n/a n/a n/a n/a n/a I1a J Tooth 2 n/a Shotgun minus ds n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a n/a n/a n/a n/a +BOG028 F Anatolia_Bogazkoy_Ottoman n/a n/a n/a n/a n/a 020-074 Turkey Boğazköy n/a 40.02 34.61 n/a n/a n/a n/a n/a n/a n/a n/a HV1b3b female Petrous 2 n/a Shotgun minus ds n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a n/a n/a n/a n/a +BOG020 M Anatolia_Bogazkoy_Roman n/a n/a n/a n/a n/a 605-620 Turkey Boğazköy n/a 40.02 34.61 n/a n/a n/a n/a n/a n/a n/a n/a X2f J2a1h Petrous 2 n/a Shotgun minus ds n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a n/a n/a n/a n/a +sha009 F Iran_ShahTepe_BA n/a n/a n/a n/a n/a S3, FIII Iran Shahtepe n/a 37.14918344 54.65098268 n/a n/a n/a n/a n/a n/a n/a n/a U5a2+16294 female Petrous 1 n/a Shotgun minus ds n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a n/a n/a n/a n/a +BOG019 M Anatolia_Bogazkoy_Roman n/a n/a n/a n/a n/a 373-718 Turkey Boğazköy n/a 40.02 34.61 n/a n/a n/a n/a n/a n/a n/a n/a X2n T1a1 Petrous 1 n/a Shotgun minus ds n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a n/a n/a n/a n/a +sha008 F Iran_ShahTepe_BA n/a n/a n/a n/a n/a S5, FII Iran Shahtepe n/a 37.14918344 54.65098268 n/a n/a n/a n/a n/a n/a n/a n/a K1a12a female Petrous 2 n/a Shotgun minus ds n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a n/a n/a n/a n/a +BOG024 M Anatolia_Bogazkoy_Roman n/a n/a n/a n/a n/a 107-329 Turkey Boğazköy n/a 40.02 34.61 n/a n/a n/a n/a n/a n/a n/a n/a H13c1a J Petrous 2 n/a Shotgun minus ds n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a n/a n/a n/a n/a +sha014 M Iran_ShahTepe_BA n/a n/a n/a n/a n/a S3, GIII Iran Shahtepe n/a 37.14918344 54.65098268 n/a n/a n/a n/a n/a n/a n/a n/a HV13b T1a Tooth 2 n/a Shotgun minus ds n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a n/a n/a n/a n/a +sha010 F Iran_ShahTepe_BA n/a n/a n/a n/a n/a S4, FIII Iran Shahtepe n/a 37.14918344 54.65098268 n/a n/a n/a n/a n/a n/a n/a n/a HV2 female Petrous 2 n/a Shotgun minus ds n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a n/a n/a n/a n/a +sha007 F Iran_ShahTepe_BA n/a n/a n/a n/a n/a S3, EIII Iran Shahtepe n/a 37.14918344 54.65098268 n/a n/a n/a n/a n/a n/a n/a n/a HV13b female Tooth 2 n/a Shotgun minus ds n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a n/a n/a n/a n/a +sha003 F Iran_ShahTepe_BA n/a n/a n/a n/a n/a S2, BIII Iran Shahtepe n/a 37.14918344 54.65098268 n/a n/a n/a n/a n/a n/a n/a n/a H14 female Tooth 2 n/a Shotgun minus ds n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a n/a n/a n/a n/a diff --git a/2023_Koptekin_SouthwestAsia/POSEIDON.yml b/2023_Koptekin_SouthwestAsia/POSEIDON.yml index 76ab76dc..dd49183e 100644 --- a/2023_Koptekin_SouthwestAsia/POSEIDON.yml +++ b/2023_Koptekin_SouthwestAsia/POSEIDON.yml @@ -1,17 +1,23 @@ poseidonVersion: 2.7.1 title: 2023_Koptekin_SouthwestAsia -description: Empty package template. Please add a description +description: Spatial and temporal heterogeneity in human mobility patterns in Holocene + Southwest Asia and the East Mediterranean contributor: -- name: Josiah Carberry - email: carberry@brown.edu +- name: Dhananjaya Aththayanaka + email: dhananjaya_aththanayaka@eva.mpg.de orcid: 0000-0002-1825-0097 -packageVersion: 0.1.0 -lastModified: 2024-03-15 +packageVersion: 1.0.0 +lastModified: 2024-06-06 genotypeData: format: PLINK genoFile: 2023_Koptekin_SouthwestAsia.bed + genoFileChkSum: dd02032196ea9f2c9c5f556f20ad015d snpFile: 2023_Koptekin_SouthwestAsia.bim + snpFileChkSum: 433fa85a23f3123bade02348e4628b75 indFile: 2023_Koptekin_SouthwestAsia.fam + indFileChkSum: 88cf545551365266a7bf6110b5819a6b snpSet: Other jannoFile: 2023_Koptekin_SouthwestAsia.janno +jannoFileChkSum: c55789693b75daad7c1a5d2a07a45cc5 bibFile: 2023_Koptekin_SouthwestAsia.bib +bibFileChkSum: 6ba6cb04a5a5d4144b470b5df203e859 From b5a8a4f0ed4975779303c85ce3addf21236b6b2c Mon Sep 17 00:00:00 2001 From: dhananjaya93 Date: Fri, 14 Jun 2024 00:07:32 +0200 Subject: [PATCH 4/7] C14 dates and contamination added --- .../2023_Koptekin_SouthwestAsia.janno | 72 +++++++++---------- 1 file changed, 36 insertions(+), 36 deletions(-) diff --git a/2023_Koptekin_SouthwestAsia/2023_Koptekin_SouthwestAsia.janno b/2023_Koptekin_SouthwestAsia/2023_Koptekin_SouthwestAsia.janno index 7e57cd61..bf3fe47f 100644 --- a/2023_Koptekin_SouthwestAsia/2023_Koptekin_SouthwestAsia.janno +++ b/2023_Koptekin_SouthwestAsia/2023_Koptekin_SouthwestAsia.janno @@ -1,36 +1,36 @@ -Poseidon_ID Genetic_Sex Group_Name Alternative_IDs Relation_To Relation_Degree Relation_Type Relation_Note Collection_ID Country Location Site Latitude Longitude Date_Type Date_C14_Labnr Date_C14_Uncal_BP Date_C14_Uncal_BP_Err Date_BC_AD_Start Date_BC_AD_Median Date_BC_AD_Stop Date_Note MT_Haplogroup Y_Haplogroup Source_Tissue Nr_Libraries Library_Names Capture_Type UDG Library_Built Genotype_Ploidy Data_Preparation_Pipeline_URL Endogenous Nr_SNPs Coverage_on_Target_SNPs Damage Contamination Contamination_Err Contamination_Meas Contamination_Note Genetic_Source_Accession_IDs Primary_Contact Publication Note Keywords Keywords -G31 M Greece_Perachora_BA n/a n/a n/a n/a n/a ΑΠ, #31_6 Greece Perachora n/a 38.03 22.87 n/a n/a n/a n/a n/a n/a n/a n/a J1c2 BT Petrous 37 n/a Shotgun n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a n/a n/a n/a n/a -G65 F Greece_Perachora_B n/a n/a n/a n/a n/a ΚΟ 37 / Π1022 ΛΒ Β4, #65_1 Greece Perachora n/a 38.03 22.87 n/a n/a n/a n/a n/a n/a n/a n/a T2c1d+152 female Petrous 2 n/a Shotgun n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a n/a n/a n/a n/a -G66 F Greece_Perachora_BA n/a n/a n/a n/a n/a P1008 PB4, #66 Greece Perachora n/a 38.03 22.87 n/a n/a n/a n/a n/a n/a n/a n/a H female Petrous 2 n/a Shotgun n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a n/a n/a n/a n/a -G62 M Greece_Perachora_BA n/a n/a n/a n/a n/a KO 37 / Π920, #62_1; KO 37 / Π920, #62_3 Greece Perachora n/a 38.03 22.87 n/a n/a n/a n/a n/a n/a n/a n/a J1c G2a2b2a Petrous 4 n/a Shotgun n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a n/a n/a n/a n/a -G76a F Greece_Perachora_BA n/a n/a n/a n/a n/a KO 37 / Π920, #62_2; Π934α, #76 Greece Perachora n/a 38.03 22.87 n/a n/a n/a n/a n/a n/a n/a n/a T2c1+146 female Petrous, Tooth 6 n/a Shotgun n/a ds n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a n/a n/a n/a n/a -mus006 M Anatolia_Musular_N n/a n/a n/a n/a n/a SK6 Turkey Musular n/a 38.35 34.22 n/a n/a n/a n/a n/a n/a n/a n/a N1a1a1 CT Petrous 3 n/a Shotgun minus ds n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a n/a n/a n/a n/a -geo029 M Georgia_Didnauri_BA n/a n/a n/a n/a n/a N 14 / map number 46 Georgia Didnauri n/a 41.46 46.11 n/a n/a n/a n/a n/a n/a n/a n/a I5c R1b1a2a2 M3 sin mand + Pm1 dex mand 1 n/a Shotgun minus ds n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a n/a n/a n/a n/a -zrj003 M Azerbaijan_Shamakhi_IA n/a n/a n/a n/a n/a '''Shamakhi ''''III''''''' Azerbaijan Shamakhi n/a 40.35 47.76 n/a n/a n/a n/a n/a n/a n/a n/a K1a19 J Tooth 1 n/a Shotgun minus ds n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a n/a n/a n/a n/a -geo005 M Georgia_Didnauri_BA n/a n/a n/a n/a n/a N1 / Shuagori Georgia Didnauri n/a 41.46 46.11 n/a n/a n/a n/a n/a n/a n/a n/a U7b R1b1a2a2 Bone fragment 3 n/a Shotgun minus ds n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a n/a n/a n/a n/a -GOR002 F Anatolia_Gordion_IA n/a n/a n/a n/a n/a YH41500 Turkey Gordion n/a 39.65 31.97 n/a n/a n/a n/a n/a n/a n/a n/a K1a3 female Petrous 2 n/a Shotgun minus ds n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a n/a n/a n/a n/a -geo006 M Georgia_Didnauri_BA n/a n/a n/a n/a n/a N 8A / map number:14 Georgia Didnauri n/a 41.46 46.11 n/a n/a n/a n/a n/a n/a n/a n/a X2 O1b1a2 M max 2 n/a Shotgun minus ds n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a n/a n/a n/a n/a -mus005 F Anatolia_Musular_N n/a n/a n/a n/a n/a SK5 Turkey Musular n/a 38.35 34.22 n/a n/a n/a n/a n/a n/a n/a n/a K1a4 female Petrous 5 n/a Shotgun minus ds n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a n/a n/a n/a n/a -ulu117 F Anatolia_Ulucak_BA n/a n/a n/a n/a n/a M7a Turkey Ulucak n/a 38.48 27.35 n/a n/a n/a n/a n/a n/a n/a n/a J1c11 female Petrous 3 n/a Shotgun minus ds n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a n/a n/a n/a n/a -G37 M Greece_Sarakenos_BA n/a n/a n/a n/a n/a G37 Greece Sarakenos n/a 38.45 23.22 n/a n/a n/a n/a n/a n/a n/a n/a H11a2 J Tooth 3 n/a Shotgun minus ds n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a n/a n/a n/a n/a -gur019 F Georgia_Nazarlebi_BA n/a n/a n/a n/a n/a N19 Georgia Nazarlebi n/a 41.33 46.23 n/a n/a n/a n/a n/a n/a n/a n/a K1a4b female Tooth 2 n/a Shotgun minus ds n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a n/a n/a n/a n/a -G23 M Greece_Theopetra_BA n/a n/a n/a n/a n/a G23 Greece Theopetra n/a 39.68 21.68 n/a n/a n/a n/a n/a n/a n/a n/a H5 I Tooth 4 n/a Shotgun minus ds n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a n/a n/a n/a n/a -sha006 F Iran_ShahTepe_BA n/a n/a n/a n/a n/a S9, EII Iran Shahtepe n/a 37.14918344 54.65098268 n/a n/a n/a n/a n/a n/a n/a n/a J1b1b1 female Tooth 2 n/a Shotgun minus ds n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a n/a n/a n/a n/a -gur017 M Georgia_Nazarlebi_BA n/a n/a n/a n/a n/a N17 Georgia Nazarlebi n/a 41.33 46.23 n/a n/a n/a n/a n/a n/a n/a n/a N1a1a1a I Petrous 2 n/a Shotgun minus ds n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a n/a n/a n/a n/a -geo017 F Georgia_Doghlauri_BA n/a n/a n/a n/a n/a N 93 Georgia Doghlauri n/a 41.68 44.77 n/a n/a n/a n/a n/a n/a n/a n/a H4b female Bone fragment 1 n/a Shotgun minus ds n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a n/a n/a n/a n/a -sha012 M Iran_ShahTepe_BA n/a n/a n/a n/a n/a S21, FIII Iran Shahtepe n/a 37.14918344 54.65098268 n/a n/a n/a n/a n/a n/a n/a n/a U1a3 J Tooth 2 n/a Shotgun minus ds n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a n/a n/a n/a n/a -gur016 M Georgia_Nazarlebi_B n/a n/a n/a n/a n/a N16 Georgia Nazarlebi n/a 41.33 46.23 n/a n/a n/a n/a n/a n/a n/a n/a K A Petrous 2 n/a Shotgun minus ds n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a n/a n/a n/a n/a -geo015 M Georgia_Doghlauri_KuraAraxes_BA n/a n/a n/a n/a n/a N 39 Georgia Doghlauri n/a 41.68 44.77 n/a n/a n/a n/a n/a n/a n/a n/a K1a J2a1b1 Bone fragment 1 n/a Shotgun minus ds n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a n/a n/a n/a n/a -CTG025 F Anatolia_CineTepecik_BA n/a n/a n/a n/a n/a g25 Turkey Çine-Tepecik n/a 37.6 28.01 n/a n/a n/a n/a n/a n/a n/a n/a W6b female Petrous 3 n/a Shotgun minus ds n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a n/a n/a n/a n/a -GOR001 M Anatolia_Gordion_IA n/a n/a n/a n/a n/a YH36611 Turkey Gordion n/a 39.65 31.97 n/a n/a n/a n/a n/a n/a n/a n/a H14a J2a1 Petrous 1 n/a Shotgun minus ds n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a n/a n/a n/a n/a -sha004 M Iran_ShahTepe_BA n/a n/a n/a n/a n/a S4, BIII Iran Shahtepe n/a 37.14918344 54.65098268 n/a n/a n/a n/a n/a n/a n/a n/a I1a J Tooth 2 n/a Shotgun minus ds n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a n/a n/a n/a n/a -BOG028 F Anatolia_Bogazkoy_Ottoman n/a n/a n/a n/a n/a 020-074 Turkey Boğazköy n/a 40.02 34.61 n/a n/a n/a n/a n/a n/a n/a n/a HV1b3b female Petrous 2 n/a Shotgun minus ds n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a n/a n/a n/a n/a -BOG020 M Anatolia_Bogazkoy_Roman n/a n/a n/a n/a n/a 605-620 Turkey Boğazköy n/a 40.02 34.61 n/a n/a n/a n/a n/a n/a n/a n/a X2f J2a1h Petrous 2 n/a Shotgun minus ds n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a n/a n/a n/a n/a -sha009 F Iran_ShahTepe_BA n/a n/a n/a n/a n/a S3, FIII Iran Shahtepe n/a 37.14918344 54.65098268 n/a n/a n/a n/a n/a n/a n/a n/a U5a2+16294 female Petrous 1 n/a Shotgun minus ds n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a n/a n/a n/a n/a -BOG019 M Anatolia_Bogazkoy_Roman n/a n/a n/a n/a n/a 373-718 Turkey Boğazköy n/a 40.02 34.61 n/a n/a n/a n/a n/a n/a n/a n/a X2n T1a1 Petrous 1 n/a Shotgun minus ds n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a n/a n/a n/a n/a -sha008 F Iran_ShahTepe_BA n/a n/a n/a n/a n/a S5, FII Iran Shahtepe n/a 37.14918344 54.65098268 n/a n/a n/a n/a n/a n/a n/a n/a K1a12a female Petrous 2 n/a Shotgun minus ds n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a n/a n/a n/a n/a -BOG024 M Anatolia_Bogazkoy_Roman n/a n/a n/a n/a n/a 107-329 Turkey Boğazköy n/a 40.02 34.61 n/a n/a n/a n/a n/a n/a n/a n/a H13c1a J Petrous 2 n/a Shotgun minus ds n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a n/a n/a n/a n/a -sha014 M Iran_ShahTepe_BA n/a n/a n/a n/a n/a S3, GIII Iran Shahtepe n/a 37.14918344 54.65098268 n/a n/a n/a n/a n/a n/a n/a n/a HV13b T1a Tooth 2 n/a Shotgun minus ds n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a n/a n/a n/a n/a -sha010 F Iran_ShahTepe_BA n/a n/a n/a n/a n/a S4, FIII Iran Shahtepe n/a 37.14918344 54.65098268 n/a n/a n/a n/a n/a n/a n/a n/a HV2 female Petrous 2 n/a Shotgun minus ds n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a n/a n/a n/a n/a -sha007 F Iran_ShahTepe_BA n/a n/a n/a n/a n/a S3, EIII Iran Shahtepe n/a 37.14918344 54.65098268 n/a n/a n/a n/a n/a n/a n/a n/a HV13b female Tooth 2 n/a Shotgun minus ds n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a n/a n/a n/a n/a -sha003 F Iran_ShahTepe_BA n/a n/a n/a n/a n/a S2, BIII Iran Shahtepe n/a 37.14918344 54.65098268 n/a n/a n/a n/a n/a n/a n/a n/a H14 female Tooth 2 n/a Shotgun minus ds n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a n/a n/a n/a n/a +"Poseidon_ID" "Genetic_Sex" "Group_Name" "Alternative_IDs" "Relation_To" "Relation_Degree" "Relation_Type" "Relation_Note" "Collection_ID" "Country" "Location" "Site" "Latitude" "Longitude" "Date_Type" "Date_C14_Labnr" "Date_C14_Uncal_BP" "Date_C14_Uncal_BP_Err" "Date_BC_AD_Start" "Date_BC_AD_Median" "Date_BC_AD_Stop" "Date_Note" "MT_Haplogroup" "Y_Haplogroup" "Source_Tissue" "Nr_Libraries" "Library_Names" "Capture_Type" "UDG" "Library_Built" "Genotype_Ploidy" "Data_Preparation_Pipeline_URL" "Endogenous" "Nr_SNPs" "Coverage_on_Target_SNPs" "Damage" "Contamination" "Contamination_Err" "Contamination_Meas" "Contamination_Note" "Genetic_Source_Accession_IDs" "Primary_Contact" "Publication" "Note" "Keywords" +"G31" "M" "Greece_Perachora_BA" "n/a" "n/a" "n/a" "n/a" "n/a" "ΑΠ, #31_6" " Greece" "Perachora" "n/a" 38.03 22.87 "contextual" "n/a" "n/a" "n/a" 2700 4400 2200 "n/a" "J1c2" "BT" "Petrous" 37 "n/a" "Shotgun" "mixed" "ds" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "0.003861243 0.002659277" "n/a" "n/a" "n/a" "PRJEB51705" "n/a" "2023_Koptekin_SouthwestAsia" "n/a" "n/a" +"G65" "F" "Greece_Perachora_B" "n/a" "n/a" "n/a" "n/a" "n/a" "ΚΟ 37 / Π1022 ΛΒ Β4, #65_1" " Greece" "Perachora" "n/a" 38.03 22.87 "contextual" "n/a" "n/a" "n/a" 2700 4400 2200 "n/a" "T2c1d+152" "female" "Petrous" 2 "n/a" "Shotgun" "mixed" "ds" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "PRJEB51705" "n/a" "2023_Koptekin_SouthwestAsia" "n/a" "n/a" +"G66" "F" "Greece_Perachora_BA" "n/a" "n/a" "n/a" "n/a" "n/a" "P1008 PB4, #66" " Greece" "Perachora" "n/a" 38.03 22.87 "contextual" "n/a" "n/a" "n/a" 2700 4400 2200 "n/a" "H" "female" "Petrous" 2 "n/a" "Shotgun" "mixed" "ds" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "PRJEB51705" "n/a" "2023_Koptekin_SouthwestAsia" "n/a" "n/a" +"G62" "M" "Greece_Perachora_BA" "n/a" "n/a" "n/a" "n/a" "n/a" "KO 37 / Π920, #62_1; KO 37 / Π920, #62_3" " Greece" "Perachora" "n/a" 38.03 22.87 "contextual" "n/a" "n/a" "n/a" 2700 4400 2200 "n/a" "J1c" "G2a2b2a" "Petrous" 4 "n/a" "Shotgun" "mixed" "ds" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" 0.004067606 "n/a" "n/a" "n/a" "PRJEB51705" "n/a" "2023_Koptekin_SouthwestAsia" "n/a" "n/a" +"G76a" "F" "Greece_Perachora_BA" "n/a" "n/a" "n/a" "n/a" "n/a" "KO 37 / Π920, #62_2; Π934α, #76" " Greece" "Perachora" "n/a" 38.03 22.87 "C14" "Beta-438877" 3950 30 2569 4405 2340 "n/a" "T2c1+146" "female" "Petrous, Tooth" 6 "n/a" "Shotgun" "minus" "ds" "diploid" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "PRJEB51705" "n/a" "2023_Koptekin_SouthwestAsia" "n/a" "n/a" +"mus006" "M" "Anatolia_Musular_N" "n/a" "n/a" "n/a" "n/a" "n/a" "SK6" " Turkey" "Musular" "n/a" 38.35 34.22 "C14" "TÜBİTAK- 671" 8104 35 7180 9060 7039 "n/a" "N1a1a1" "CT" "Petrous" 3 "n/a" "Shotgun" "minus" "ds" "diploid" "n/a" "n/a" "n/a" "n/a" "n/a" "0.001759851 0.00163945" "n/a" "n/a" "n/a" "PRJEB51705" "n/a" "2023_Koptekin_SouthwestAsia" "n/a" "n/a" +"geo029" "M" "Georgia_Didnauri_BA" "n/a" "n/a" "n/a" "n/a" "n/a" "N 14 / map number 46" " Georgia" "Didnauri" "n/a" 41.46 46.11 "C14" "Ua-65812" 2932 28 1220 3068 1016 "n/a" "I5c" "R1b1a2a2" "M3 sin mand + Pm1 dex mand" 1 "n/a" "Shotgun" "minus" "ds" "diploid" "n/a" "n/a" "n/a" "n/a" "n/a" "0.003530848 0.002017967" "n/a" "n/a" "n/a" "PRJEB51705" "n/a" "2023_Koptekin_SouthwestAsia" "n/a" "n/a" +"zrj003" "M" "Azerbaijan_Shamakhi_IA" "n/a" "n/a" "n/a" "n/a" "n/a" "Shamakhi III" " Azerbaijan" "Shamakhi" "n/a" 40.35 47.76 "C14" "Ua-65816" 1797 28 206 1674 347 "n/a" "K1a19" "J" "Tooth" 1 "n/a" "Shotgun" "minus" "ds" "diploid" "n/a" "n/a" "n/a" "n/a" "n/a" "0.002892098 0.002464935" "n/a" "n/a" "n/a" "PRJEB51705" "n/a" "2023_Koptekin_SouthwestAsia" "n/a" "n/a" +"geo005" "M" "Georgia_Didnauri_BA" "n/a" "n/a" "n/a" "n/a" "n/a" "N1 / Shuagori" " Georgia" "Didnauri" "n/a" 41.46 46.11 "C14" "Ua-65808" 2949 30 1258 3104 1049 "n/a" "U7b" "R1b1a2a2" "Bone fragment" 3 "n/a" "Shotgun" "minus" "ds" "diploid" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "PRJEB51705" "n/a" "2023_Koptekin_SouthwestAsia" "n/a" "n/a" +"GOR002" "F" "Anatolia_Gordion_IA" "n/a" "n/a" "n/a" "n/a" "n/a" "YH41500" " Turkey" "Gordion" "n/a" 39.65 31.97 "contextual" "n/a" "n/a" "n/a" 333 2116 0 "n/a" "K1a3" "female" "Petrous" 2 "n/a" "Shotgun" "minus" "ds" "diploid" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "PRJEB51705" "n/a" "2023_Koptekin_SouthwestAsia" "n/a" "n/a" +"geo006" "M" "Georgia_Didnauri_BA" "n/a" "n/a" "n/a" "n/a" "n/a" "N 8A / map number:14" " Georgia" "Didnauri" "n/a" 41.46 46.11 "C14" "Ua-65809" 2797 30 1041 2889 837 "n/a" "X2" "O1b1a2" "M max" 2 "n/a" "Shotgun" "minus" "ds" "diploid" "n/a" "n/a" "n/a" "n/a" "n/a" "6.610696e-05 6.610696e-05" "n/a" "n/a" "n/a" "PRJEB51705" "n/a" "2023_Koptekin_SouthwestAsia" "n/a" "n/a" +"mus005" "F" "Anatolia_Musular_N" "n/a" "n/a" "n/a" "n/a" "n/a" "SK5" " Turkey" "Musular" "n/a" 38.35 34.22 "C14" "TÜBİTAK-1151" 8250 35 7377 9222 7167 "n/a" "K1a4" "female" "Petrous" 5 "n/a" "Shotgun" "minus" "ds" "diploid" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "PRJEB51705" "n/a" "2023_Koptekin_SouthwestAsia" "n/a" "n/a" +"ulu117" "F" "Anatolia_Ulucak_BA" "n/a" "n/a" "n/a" "n/a" "n/a" "M7a" " Turkey" "Ulucak" "n/a" 38.48 27.35 "contextual" "n/a" "n/a" "n/a" 4000 5450 3000 "n/a" "J1c11" "female" "Petrous" 3 "n/a" "Shotgun" "minus" "ds" "diploid" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "PRJEB51705" "n/a" "2023_Koptekin_SouthwestAsia" "n/a" "n/a" +"G37" "M" "Greece_Sarakenos_BA" "n/a" "n/a" "n/a" "n/a" "n/a" "G37" " Greece" "Sarakenos" "n/a" 38.45 23.22 "C14" "Beta-438876" 3920 30 2325 4263 2300 "n/a" "H11a2" "J" "Tooth" 3 "n/a" "Shotgun" "minus" "ds" "diploid" "n/a" "n/a" "n/a" "n/a" "n/a" "0.001186241 0.00132235" "n/a" "n/a" "n/a" "PRJEB51705" "n/a" "2023_Koptekin_SouthwestAsia" "n/a" "n/a" +"gur019" "F" "Georgia_Nazarlebi_BA" "n/a" "n/a" "n/a" "n/a" "n/a" "N19" " Georgia" "Nazarlebi" "n/a" 41.33 46.23 "contextual" "n/a" "n/a" "n/a" 1500 3200 1000 "n/a" "K1a4b" "female" "Tooth" 2 "n/a" "Shotgun" "minus" "ds" "diploid" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "PRJEB51705" "n/a" "2023_Koptekin_SouthwestAsia" "n/a" "n/a" +"G23" "M" "Greece_Theopetra_BA" "n/a" "n/a" "n/a" "n/a" "n/a" "G23" " Greece" "Theopetra" "n/a" 39.68 21.68 "C14" "Beta-438875" 3800 30 2335 4188 2140 "n/a" "H5" "I" "Tooth" 4 "n/a" "Shotgun" "minus" "ds" "diploid" "n/a" "n/a" "n/a" "n/a" "n/a" "0.003901053 0.002019586" "n/a" "n/a" "n/a" "PRJEB51705" "n/a" "2023_Koptekin_SouthwestAsia" "n/a" "n/a" +"sha006" "F" "Iran_ShahTepe_BA" "n/a" "n/a" "n/a" "n/a" "n/a" "S9, EII" " Iran" "Shahtepe" "n/a" 37.14918344 54.65098268 "contextual" "n/a" "n/a" "n/a" 3200 5100 3100 "n/a" "J1b1b1" "female" "Tooth" 2 "n/a" "Shotgun" "minus" "ds" "diploid" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "PRJEB51705" "n/a" "2023_Koptekin_SouthwestAsia" "n/a" "n/a" +"gur017" "M" "Georgia_Nazarlebi_BA" "n/a" "n/a" "n/a" "n/a" "n/a" "N17" " Georgia" "Nazarlebi" "n/a" 41.33 46.23 "contextual" "n/a" "n/a" "n/a" 1500 3200 1000 "n/a" "N1a1a1a" "I" "Petrous" 2 "n/a" "Shotgun" "minus" "ds" "diploid" "n/a" "n/a" "n/a" "n/a" "n/a" "0.003481787 0.00310562" "n/a" "n/a" "n/a" "PRJEB51705" "n/a" "2023_Koptekin_SouthwestAsia" "n/a" "n/a" +"geo017" "F" "Georgia_Doghlauri_BA" "n/a" "n/a" "n/a" "n/a" "n/a" "N 93" " Georgia" "Doghlauri" "n/a" 41.68 44.77 "C14" "Ua-65811" 2987 28 1373 3196 1118 "n/a" "H4b" "female" "Bone fragment" 1 "n/a" "Shotgun" "minus" "ds" "diploid" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "PRJEB51705" "n/a" "2023_Koptekin_SouthwestAsia" "n/a" "n/a" +"sha012" "M" "Iran_ShahTepe_BA" "n/a" "n/a" "n/a" "n/a" "n/a" "S21, FIII" " Iran" "Shahtepe" "n/a" 37.14918344 54.65098268 "contextual" "n/a" "n/a" "n/a" 3200 5100 3100 "n/a" "U1a3" "J" "Tooth" 2 "n/a" "Shotgun" "minus" "ds" "diploid" "n/a" "n/a" "n/a" "n/a" "n/a" 0.03124902 "n/a" "n/a" "n/a" "PRJEB51705" "n/a" "2023_Koptekin_SouthwestAsia" "n/a" "n/a" +"gur016" "M" "Georgia_Nazarlebi_B" "n/a" "n/a" "n/a" "n/a" "n/a" "N16" " Georgia" "Nazarlebi" "n/a" 41.33 46.23 "contextual" "n/a" "n/a" "n/a" 1500 3200 1000 "n/a" "K" "A" "Petrous" 2 "n/a" "Shotgun" "minus" "ds" "diploid" "n/a" "n/a" "n/a" "n/a" "n/a" "6.610696e-05 6.610696e-05" "n/a" "n/a" "n/a" "PRJEB51705" "n/a" "2023_Koptekin_SouthwestAsia" "n/a" "n/a" +"geo015" "M" "Georgia_Doghlauri_KuraAraxes_BA" "n/a" "n/a" "n/a" "n/a" "n/a" "N 39" " Georgia" "Doghlauri" "n/a" 41.68 44.77 "C14" "Ua-65810" 4321 32 3016 4901 2886 "n/a" "K1a" "J2a1b1" "Bone fragment" 1 "n/a" "Shotgun" "minus" "ds" "diploid" "n/a" "n/a" "n/a" "n/a" "n/a" "0.003980752 0.002162388" "n/a" "n/a" "n/a" "PRJEB51705" "n/a" "2023_Koptekin_SouthwestAsia" "n/a" "n/a" +"CTG025" "F" "Anatolia_CineTepecik_BA" "n/a" "n/a" "n/a" "n/a" "n/a" "g25" " Turkey" "Çine-Tepecik" "n/a" 37.6 28.01 "C14" "TÜBİTAK-744" 3551 31 1977 3825 1772 "n/a" "W6b" "female" "Petrous" 3 "n/a" "Shotgun" "minus" "ds" "diploid" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "PRJEB51705" "n/a" "2023_Koptekin_SouthwestAsia" "n/a" "n/a" +"GOR001" "M" "Anatolia_Gordion_IA" "n/a" "n/a" "n/a" "n/a" "n/a" "YH36611" " Turkey" "Gordion" "n/a" 39.65 31.97 "contextual" "n/a" "n/a" "n/a" 333 2116 0 "n/a" "H14a" "J2a1" "Petrous" 1 "n/a" "Shotgun" "minus" "ds" "diploid" "n/a" "n/a" "n/a" "n/a" "n/a" 0.01104251 "n/a" "n/a" "n/a" "PRJEB51705" "n/a" "2023_Koptekin_SouthwestAsia" "n/a" "n/a" +"sha004" "M" "Iran_ShahTepe_BA" "n/a" "n/a" "n/a" "n/a" "n/a" "S4, BIII" " Iran" "Shahtepe" "n/a" 37.14918344 54.65098268 "C14" "Ua-70798" 4560 33 3487 5244 3101 "n/a" "I1a" "J" "Tooth" 2 "n/a" "Shotgun" "minus" "ds" "diploid" "n/a" "n/a" "n/a" "n/a" "n/a" 0.02241147 "n/a" "n/a" "n/a" "PRJEB51705" "n/a" "2023_Koptekin_SouthwestAsia" "n/a" "n/a" +"BOG028" "F" "Anatolia_Bogazkoy_Ottoman" "n/a" "n/a" "n/a" "n/a" "n/a" "020-074" " Turkey" "Boğazköy" "n/a" 40.02 34.61 "contextual" "n/a" "n/a" "n/a" 1000 500 1900 "n/a" "HV1b3b" "female" "Petrous" 2 "n/a" "Shotgun" "minus" "ds" "diploid" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "PRJEB51705" "n/a" "2023_Koptekin_SouthwestAsia" "n/a" "n/a" +"BOG020" "M" "Anatolia_Bogazkoy_Roman" "n/a" "n/a" "n/a" "n/a" "n/a" "605-620" " Turkey" "Boğazköy" "n/a" 40.02 34.61 "contextual" "n/a" "n/a" "n/a" 130 1790 190 "n/a" "X2f" "J2a1h" "Petrous" 2 "n/a" "Shotgun" "minus" "ds" "diploid" "n/a" "n/a" "n/a" "n/a" "n/a" 0.01192245 "n/a" "n/a" "n/a" "PRJEB51705" "n/a" "2023_Koptekin_SouthwestAsia" "n/a" "n/a" +"sha009" "F" "Iran_ShahTepe_BA" "n/a" "n/a" "n/a" "n/a" "n/a" "S3, FIII" " Iran" "Shahtepe" "n/a" 37.14918344 54.65098268 "C14" "Ua-70800" 4484 33 3345 5137 3029 "n/a" "U5a2+16294" "female" "Petrous" 1 "n/a" "Shotgun" "minus" "ds" "diploid" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "PRJEB51705" "n/a" "2023_Koptekin_SouthwestAsia" "n/a" "n/a" +"BOG019" "M" "Anatolia_Bogazkoy_Roman" "n/a" "n/a" "n/a" "n/a" "n/a" "373-718" " Turkey" "Boğazköy" "n/a" 40.02 34.61 "contextual" "n/a" "n/a" "n/a" 100 1725 350 "n/a" "X2n" "T1a1" "Petrous" 1 "n/a" "Shotgun" "minus" "ds" "diploid" "n/a" "n/a" "n/a" "n/a" "n/a" "0.002195292 0.001824428" "n/a" "n/a" "n/a" "PRJEB51705" "n/a" "2023_Koptekin_SouthwestAsia" "n/a" "n/a" +"sha008" "F" "Iran_ShahTepe_BA" "n/a" "n/a" "n/a" "n/a" "n/a" "S5, FII" " Iran" "Shahtepe" "n/a" 37.14918344 54.65098268 "contextual" "n/a" "n/a" "n/a" 3200 5100 3100 "n/a" "K1a12a" "female" "Petrous" 2 "n/a" "Shotgun" "minus" "ds" "diploid" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "PRJEB51705" "n/a" "2023_Koptekin_SouthwestAsia" "n/a" "n/a" +"BOG024" "M" "Anatolia_Bogazkoy_Roman" "n/a" "n/a" "n/a" "n/a" "n/a" "107-329" " Turkey" "Boğazköy" "n/a" 40.02 34.61 "contextual" "n/a" "n/a" "n/a" 130 1790 190 "n/a" "H13c1a" "J" "Petrous" 2 "n/a" "Shotgun" "minus" "ds" "diploid" "n/a" "n/a" "n/a" "n/a" "n/a" "0.005964572 0.002726913" "n/a" "n/a" "n/a" "PRJEB51705" "n/a" "2023_Koptekin_SouthwestAsia" "n/a" "n/a" +"sha014" "M" "Iran_ShahTepe_BA" "n/a" "n/a" "n/a" "n/a" "n/a" "S3, GIII" " Iran" "Shahtepe" "n/a" 37.14918344 54.65098268 "contextual" "n/a" "n/a" "n/a" 3200 5100 3100 "n/a" "HV13b" "T1a" "Tooth" 2 "n/a" "Shotgun" "minus" "ds" "diploid" "n/a" "n/a" "n/a" "n/a" "n/a" "0.02839552 0.02088079" "n/a" "n/a" "n/a" "PRJEB51705" "n/a" "2023_Koptekin_SouthwestAsia" "n/a" "n/a" +"sha010" "F" "Iran_ShahTepe_BA" "n/a" "n/a" "n/a" "n/a" "n/a" "S4, FIII" " Iran" "Shahtepe" "n/a" 37.14918344 54.65098268 "contextual" "n/a" "n/a" "n/a" 3200 5100 3100 "n/a" "HV2" "female" "Petrous" 2 "n/a" "Shotgun" "minus" "ds" "diploid" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "PRJEB51705" "n/a" "2023_Koptekin_SouthwestAsia" "n/a" "n/a" +"sha007" "F" "Iran_ShahTepe_BA" "n/a" "n/a" "n/a" "n/a" "n/a" "S3, EIII" " Iran" "Shahtepe" "n/a" 37.14918344 54.65098268 "C14" "Ua-70799" 4544 33 3368 5184 3100 "n/a" "HV13b" "female" "Tooth" 2 "n/a" "Shotgun" "minus" "ds" "diploid" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "PRJEB51705" "n/a" "2023_Koptekin_SouthwestAsia" "n/a" "n/a" +"sha003" "F" "Iran_ShahTepe_BA" "n/a" "n/a" "n/a" "n/a" "n/a" "S2, BIII" " Iran" "Shahtepe" "n/a" 37.14918344 54.65098268 "contextual" "n/a" "n/a" "n/a" 3200 5100 3100 "n/a" "H14" "female" "Tooth" 2 "n/a" "Shotgun" "minus" "ds" "diploid" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "PRJEB51705" "n/a" "2023_Koptekin_SouthwestAsia" "n/a" "n/a" From c83b1d8351472236c0bd09fd4eb633b61e01e2f0 Mon Sep 17 00:00:00 2001 From: dhananjaya93 Date: Wed, 3 Jul 2024 23:53:19 +0200 Subject: [PATCH 5/7] C14 dates updated , fam file updated and contamination removed --- .../2023_Koptekin_SouthwestAsia.fam | 4 +- .../2023_Koptekin_SouthwestAsia.janno | 72 +++++++++---------- 2023_Koptekin_SouthwestAsia/POSEIDON.yml | 4 +- 3 files changed, 40 insertions(+), 40 deletions(-) diff --git a/2023_Koptekin_SouthwestAsia/2023_Koptekin_SouthwestAsia.fam b/2023_Koptekin_SouthwestAsia/2023_Koptekin_SouthwestAsia.fam index 822f3864..dd87aa91 100644 --- a/2023_Koptekin_SouthwestAsia/2023_Koptekin_SouthwestAsia.fam +++ b/2023_Koptekin_SouthwestAsia/2023_Koptekin_SouthwestAsia.fam @@ -7,7 +7,7 @@ Anatolia_Musular_N mus006 0 0 1 0 Georgia_Didnauri_BA geo029 0 0 1 0 Azerbaijan_Shamakhi_IA zrj003 0 0 1 0 Georgia_Didnauri_BA geo005 0 0 1 0 -Anatolia_Gordion_IA GOR002 0 0 2 0 +Anatolia_Gordion_IA Gordion002 0 0 2 0 Georgia_Didnauri_BA geo006 0 0 1 0 Anatolia_Musular_N mus005 0 0 2 0 Anatolia_Ulucak_BA ulu117 0 0 2 0 @@ -21,7 +21,7 @@ Iran_ShahTepe_BA sha012 0 0 1 0 Georgia_Nazarlebi_B gur016 0 0 1 0 Georgia_Doghlauri_KuraAraxes_BA geo015 0 0 1 0 Anatolia_CineTepecik_BA CTG025 0 0 2 0 -Anatolia_Gordion_IA GOR001 0 0 1 0 +Anatolia_Gordion_IA Gordion001 0 0 1 0 Iran_ShahTepe_BA sha004 0 0 1 0 Anatolia_Bogazkoy_Ottoman BOG028 0 0 2 0 Anatolia_Bogazkoy_Roman BOG020 0 0 1 0 diff --git a/2023_Koptekin_SouthwestAsia/2023_Koptekin_SouthwestAsia.janno b/2023_Koptekin_SouthwestAsia/2023_Koptekin_SouthwestAsia.janno index bf3fe47f..8ac98f64 100644 --- a/2023_Koptekin_SouthwestAsia/2023_Koptekin_SouthwestAsia.janno +++ b/2023_Koptekin_SouthwestAsia/2023_Koptekin_SouthwestAsia.janno @@ -1,36 +1,36 @@ -"Poseidon_ID" "Genetic_Sex" "Group_Name" "Alternative_IDs" "Relation_To" "Relation_Degree" "Relation_Type" "Relation_Note" "Collection_ID" "Country" "Location" "Site" "Latitude" "Longitude" "Date_Type" "Date_C14_Labnr" "Date_C14_Uncal_BP" "Date_C14_Uncal_BP_Err" "Date_BC_AD_Start" "Date_BC_AD_Median" "Date_BC_AD_Stop" "Date_Note" "MT_Haplogroup" "Y_Haplogroup" "Source_Tissue" "Nr_Libraries" "Library_Names" "Capture_Type" "UDG" "Library_Built" "Genotype_Ploidy" "Data_Preparation_Pipeline_URL" "Endogenous" "Nr_SNPs" "Coverage_on_Target_SNPs" "Damage" "Contamination" "Contamination_Err" "Contamination_Meas" "Contamination_Note" "Genetic_Source_Accession_IDs" "Primary_Contact" "Publication" "Note" "Keywords" -"G31" "M" "Greece_Perachora_BA" "n/a" "n/a" "n/a" "n/a" "n/a" "ΑΠ, #31_6" " Greece" "Perachora" "n/a" 38.03 22.87 "contextual" "n/a" "n/a" "n/a" 2700 4400 2200 "n/a" "J1c2" "BT" "Petrous" 37 "n/a" "Shotgun" "mixed" "ds" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "0.003861243 0.002659277" "n/a" "n/a" "n/a" "PRJEB51705" "n/a" "2023_Koptekin_SouthwestAsia" "n/a" "n/a" -"G65" "F" "Greece_Perachora_B" "n/a" "n/a" "n/a" "n/a" "n/a" "ΚΟ 37 / Π1022 ΛΒ Β4, #65_1" " Greece" "Perachora" "n/a" 38.03 22.87 "contextual" "n/a" "n/a" "n/a" 2700 4400 2200 "n/a" "T2c1d+152" "female" "Petrous" 2 "n/a" "Shotgun" "mixed" "ds" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "PRJEB51705" "n/a" "2023_Koptekin_SouthwestAsia" "n/a" "n/a" -"G66" "F" "Greece_Perachora_BA" "n/a" "n/a" "n/a" "n/a" "n/a" "P1008 PB4, #66" " Greece" "Perachora" "n/a" 38.03 22.87 "contextual" "n/a" "n/a" "n/a" 2700 4400 2200 "n/a" "H" "female" "Petrous" 2 "n/a" "Shotgun" "mixed" "ds" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "PRJEB51705" "n/a" "2023_Koptekin_SouthwestAsia" "n/a" "n/a" -"G62" "M" "Greece_Perachora_BA" "n/a" "n/a" "n/a" "n/a" "n/a" "KO 37 / Π920, #62_1; KO 37 / Π920, #62_3" " Greece" "Perachora" "n/a" 38.03 22.87 "contextual" "n/a" "n/a" "n/a" 2700 4400 2200 "n/a" "J1c" "G2a2b2a" "Petrous" 4 "n/a" "Shotgun" "mixed" "ds" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" 0.004067606 "n/a" "n/a" "n/a" "PRJEB51705" "n/a" "2023_Koptekin_SouthwestAsia" "n/a" "n/a" -"G76a" "F" "Greece_Perachora_BA" "n/a" "n/a" "n/a" "n/a" "n/a" "KO 37 / Π920, #62_2; Π934α, #76" " Greece" "Perachora" "n/a" 38.03 22.87 "C14" "Beta-438877" 3950 30 2569 4405 2340 "n/a" "T2c1+146" "female" "Petrous, Tooth" 6 "n/a" "Shotgun" "minus" "ds" "diploid" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "PRJEB51705" "n/a" "2023_Koptekin_SouthwestAsia" "n/a" "n/a" -"mus006" "M" "Anatolia_Musular_N" "n/a" "n/a" "n/a" "n/a" "n/a" "SK6" " Turkey" "Musular" "n/a" 38.35 34.22 "C14" "TÜBİTAK- 671" 8104 35 7180 9060 7039 "n/a" "N1a1a1" "CT" "Petrous" 3 "n/a" "Shotgun" "minus" "ds" "diploid" "n/a" "n/a" "n/a" "n/a" "n/a" "0.001759851 0.00163945" "n/a" "n/a" "n/a" "PRJEB51705" "n/a" "2023_Koptekin_SouthwestAsia" "n/a" "n/a" -"geo029" "M" "Georgia_Didnauri_BA" "n/a" "n/a" "n/a" "n/a" "n/a" "N 14 / map number 46" " Georgia" "Didnauri" "n/a" 41.46 46.11 "C14" "Ua-65812" 2932 28 1220 3068 1016 "n/a" "I5c" "R1b1a2a2" "M3 sin mand + Pm1 dex mand" 1 "n/a" "Shotgun" "minus" "ds" "diploid" "n/a" "n/a" "n/a" "n/a" "n/a" "0.003530848 0.002017967" "n/a" "n/a" "n/a" "PRJEB51705" "n/a" "2023_Koptekin_SouthwestAsia" "n/a" "n/a" -"zrj003" "M" "Azerbaijan_Shamakhi_IA" "n/a" "n/a" "n/a" "n/a" "n/a" "Shamakhi III" " Azerbaijan" "Shamakhi" "n/a" 40.35 47.76 "C14" "Ua-65816" 1797 28 206 1674 347 "n/a" "K1a19" "J" "Tooth" 1 "n/a" "Shotgun" "minus" "ds" "diploid" "n/a" "n/a" "n/a" "n/a" "n/a" "0.002892098 0.002464935" "n/a" "n/a" "n/a" "PRJEB51705" "n/a" "2023_Koptekin_SouthwestAsia" "n/a" "n/a" -"geo005" "M" "Georgia_Didnauri_BA" "n/a" "n/a" "n/a" "n/a" "n/a" "N1 / Shuagori" " Georgia" "Didnauri" "n/a" 41.46 46.11 "C14" "Ua-65808" 2949 30 1258 3104 1049 "n/a" "U7b" "R1b1a2a2" "Bone fragment" 3 "n/a" "Shotgun" "minus" "ds" "diploid" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "PRJEB51705" "n/a" "2023_Koptekin_SouthwestAsia" "n/a" "n/a" -"GOR002" "F" "Anatolia_Gordion_IA" "n/a" "n/a" "n/a" "n/a" "n/a" "YH41500" " Turkey" "Gordion" "n/a" 39.65 31.97 "contextual" "n/a" "n/a" "n/a" 333 2116 0 "n/a" "K1a3" "female" "Petrous" 2 "n/a" "Shotgun" "minus" "ds" "diploid" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "PRJEB51705" "n/a" "2023_Koptekin_SouthwestAsia" "n/a" "n/a" -"geo006" "M" "Georgia_Didnauri_BA" "n/a" "n/a" "n/a" "n/a" "n/a" "N 8A / map number:14" " Georgia" "Didnauri" "n/a" 41.46 46.11 "C14" "Ua-65809" 2797 30 1041 2889 837 "n/a" "X2" "O1b1a2" "M max" 2 "n/a" "Shotgun" "minus" "ds" "diploid" "n/a" "n/a" "n/a" "n/a" "n/a" "6.610696e-05 6.610696e-05" "n/a" "n/a" "n/a" "PRJEB51705" "n/a" "2023_Koptekin_SouthwestAsia" "n/a" "n/a" -"mus005" "F" "Anatolia_Musular_N" "n/a" "n/a" "n/a" "n/a" "n/a" "SK5" " Turkey" "Musular" "n/a" 38.35 34.22 "C14" "TÜBİTAK-1151" 8250 35 7377 9222 7167 "n/a" "K1a4" "female" "Petrous" 5 "n/a" "Shotgun" "minus" "ds" "diploid" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "PRJEB51705" "n/a" "2023_Koptekin_SouthwestAsia" "n/a" "n/a" -"ulu117" "F" "Anatolia_Ulucak_BA" "n/a" "n/a" "n/a" "n/a" "n/a" "M7a" " Turkey" "Ulucak" "n/a" 38.48 27.35 "contextual" "n/a" "n/a" "n/a" 4000 5450 3000 "n/a" "J1c11" "female" "Petrous" 3 "n/a" "Shotgun" "minus" "ds" "diploid" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "PRJEB51705" "n/a" "2023_Koptekin_SouthwestAsia" "n/a" "n/a" -"G37" "M" "Greece_Sarakenos_BA" "n/a" "n/a" "n/a" "n/a" "n/a" "G37" " Greece" "Sarakenos" "n/a" 38.45 23.22 "C14" "Beta-438876" 3920 30 2325 4263 2300 "n/a" "H11a2" "J" "Tooth" 3 "n/a" "Shotgun" "minus" "ds" "diploid" "n/a" "n/a" "n/a" "n/a" "n/a" "0.001186241 0.00132235" "n/a" "n/a" "n/a" "PRJEB51705" "n/a" "2023_Koptekin_SouthwestAsia" "n/a" "n/a" -"gur019" "F" "Georgia_Nazarlebi_BA" "n/a" "n/a" "n/a" "n/a" "n/a" "N19" " Georgia" "Nazarlebi" "n/a" 41.33 46.23 "contextual" "n/a" "n/a" "n/a" 1500 3200 1000 "n/a" "K1a4b" "female" "Tooth" 2 "n/a" "Shotgun" "minus" "ds" "diploid" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "PRJEB51705" "n/a" "2023_Koptekin_SouthwestAsia" "n/a" "n/a" -"G23" "M" "Greece_Theopetra_BA" "n/a" "n/a" "n/a" "n/a" "n/a" "G23" " Greece" "Theopetra" "n/a" 39.68 21.68 "C14" "Beta-438875" 3800 30 2335 4188 2140 "n/a" "H5" "I" "Tooth" 4 "n/a" "Shotgun" "minus" "ds" "diploid" "n/a" "n/a" "n/a" "n/a" "n/a" "0.003901053 0.002019586" "n/a" "n/a" "n/a" "PRJEB51705" "n/a" "2023_Koptekin_SouthwestAsia" "n/a" "n/a" -"sha006" "F" "Iran_ShahTepe_BA" "n/a" "n/a" "n/a" "n/a" "n/a" "S9, EII" " Iran" "Shahtepe" "n/a" 37.14918344 54.65098268 "contextual" "n/a" "n/a" "n/a" 3200 5100 3100 "n/a" "J1b1b1" "female" "Tooth" 2 "n/a" "Shotgun" "minus" "ds" "diploid" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "PRJEB51705" "n/a" "2023_Koptekin_SouthwestAsia" "n/a" "n/a" -"gur017" "M" "Georgia_Nazarlebi_BA" "n/a" "n/a" "n/a" "n/a" "n/a" "N17" " Georgia" "Nazarlebi" "n/a" 41.33 46.23 "contextual" "n/a" "n/a" "n/a" 1500 3200 1000 "n/a" "N1a1a1a" "I" "Petrous" 2 "n/a" "Shotgun" "minus" "ds" "diploid" "n/a" "n/a" "n/a" "n/a" "n/a" "0.003481787 0.00310562" "n/a" "n/a" "n/a" "PRJEB51705" "n/a" "2023_Koptekin_SouthwestAsia" "n/a" "n/a" -"geo017" "F" "Georgia_Doghlauri_BA" "n/a" "n/a" "n/a" "n/a" "n/a" "N 93" " Georgia" "Doghlauri" "n/a" 41.68 44.77 "C14" "Ua-65811" 2987 28 1373 3196 1118 "n/a" "H4b" "female" "Bone fragment" 1 "n/a" "Shotgun" "minus" "ds" "diploid" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "PRJEB51705" "n/a" "2023_Koptekin_SouthwestAsia" "n/a" "n/a" -"sha012" "M" "Iran_ShahTepe_BA" "n/a" "n/a" "n/a" "n/a" "n/a" "S21, FIII" " Iran" "Shahtepe" "n/a" 37.14918344 54.65098268 "contextual" "n/a" "n/a" "n/a" 3200 5100 3100 "n/a" "U1a3" "J" "Tooth" 2 "n/a" "Shotgun" "minus" "ds" "diploid" "n/a" "n/a" "n/a" "n/a" "n/a" 0.03124902 "n/a" "n/a" "n/a" "PRJEB51705" "n/a" "2023_Koptekin_SouthwestAsia" "n/a" "n/a" -"gur016" "M" "Georgia_Nazarlebi_B" "n/a" "n/a" "n/a" "n/a" "n/a" "N16" " Georgia" "Nazarlebi" "n/a" 41.33 46.23 "contextual" "n/a" "n/a" "n/a" 1500 3200 1000 "n/a" "K" "A" "Petrous" 2 "n/a" "Shotgun" "minus" "ds" "diploid" "n/a" "n/a" "n/a" "n/a" "n/a" "6.610696e-05 6.610696e-05" "n/a" "n/a" "n/a" "PRJEB51705" "n/a" "2023_Koptekin_SouthwestAsia" "n/a" "n/a" -"geo015" "M" "Georgia_Doghlauri_KuraAraxes_BA" "n/a" "n/a" "n/a" "n/a" "n/a" "N 39" " Georgia" "Doghlauri" "n/a" 41.68 44.77 "C14" "Ua-65810" 4321 32 3016 4901 2886 "n/a" "K1a" "J2a1b1" "Bone fragment" 1 "n/a" "Shotgun" "minus" "ds" "diploid" "n/a" "n/a" "n/a" "n/a" "n/a" "0.003980752 0.002162388" "n/a" "n/a" "n/a" "PRJEB51705" "n/a" "2023_Koptekin_SouthwestAsia" "n/a" "n/a" -"CTG025" "F" "Anatolia_CineTepecik_BA" "n/a" "n/a" "n/a" "n/a" "n/a" "g25" " Turkey" "Çine-Tepecik" "n/a" 37.6 28.01 "C14" "TÜBİTAK-744" 3551 31 1977 3825 1772 "n/a" "W6b" "female" "Petrous" 3 "n/a" "Shotgun" "minus" "ds" "diploid" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "PRJEB51705" "n/a" "2023_Koptekin_SouthwestAsia" "n/a" "n/a" -"GOR001" "M" "Anatolia_Gordion_IA" "n/a" "n/a" "n/a" "n/a" "n/a" "YH36611" " Turkey" "Gordion" "n/a" 39.65 31.97 "contextual" "n/a" "n/a" "n/a" 333 2116 0 "n/a" "H14a" "J2a1" "Petrous" 1 "n/a" "Shotgun" "minus" "ds" "diploid" "n/a" "n/a" "n/a" "n/a" "n/a" 0.01104251 "n/a" "n/a" "n/a" "PRJEB51705" "n/a" "2023_Koptekin_SouthwestAsia" "n/a" "n/a" -"sha004" "M" "Iran_ShahTepe_BA" "n/a" "n/a" "n/a" "n/a" "n/a" "S4, BIII" " Iran" "Shahtepe" "n/a" 37.14918344 54.65098268 "C14" "Ua-70798" 4560 33 3487 5244 3101 "n/a" "I1a" "J" "Tooth" 2 "n/a" "Shotgun" "minus" "ds" "diploid" "n/a" "n/a" "n/a" "n/a" "n/a" 0.02241147 "n/a" "n/a" "n/a" "PRJEB51705" "n/a" "2023_Koptekin_SouthwestAsia" "n/a" "n/a" -"BOG028" "F" "Anatolia_Bogazkoy_Ottoman" "n/a" "n/a" "n/a" "n/a" "n/a" "020-074" " Turkey" "Boğazköy" "n/a" 40.02 34.61 "contextual" "n/a" "n/a" "n/a" 1000 500 1900 "n/a" "HV1b3b" "female" "Petrous" 2 "n/a" "Shotgun" "minus" "ds" "diploid" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "PRJEB51705" "n/a" "2023_Koptekin_SouthwestAsia" "n/a" "n/a" -"BOG020" "M" "Anatolia_Bogazkoy_Roman" "n/a" "n/a" "n/a" "n/a" "n/a" "605-620" " Turkey" "Boğazköy" "n/a" 40.02 34.61 "contextual" "n/a" "n/a" "n/a" 130 1790 190 "n/a" "X2f" "J2a1h" "Petrous" 2 "n/a" "Shotgun" "minus" "ds" "diploid" "n/a" "n/a" "n/a" "n/a" "n/a" 0.01192245 "n/a" "n/a" "n/a" "PRJEB51705" "n/a" "2023_Koptekin_SouthwestAsia" "n/a" "n/a" -"sha009" "F" "Iran_ShahTepe_BA" "n/a" "n/a" "n/a" "n/a" "n/a" "S3, FIII" " Iran" "Shahtepe" "n/a" 37.14918344 54.65098268 "C14" "Ua-70800" 4484 33 3345 5137 3029 "n/a" "U5a2+16294" "female" "Petrous" 1 "n/a" "Shotgun" "minus" "ds" "diploid" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "PRJEB51705" "n/a" "2023_Koptekin_SouthwestAsia" "n/a" "n/a" -"BOG019" "M" "Anatolia_Bogazkoy_Roman" "n/a" "n/a" "n/a" "n/a" "n/a" "373-718" " Turkey" "Boğazköy" "n/a" 40.02 34.61 "contextual" "n/a" "n/a" "n/a" 100 1725 350 "n/a" "X2n" "T1a1" "Petrous" 1 "n/a" "Shotgun" "minus" "ds" "diploid" "n/a" "n/a" "n/a" "n/a" "n/a" "0.002195292 0.001824428" "n/a" "n/a" "n/a" "PRJEB51705" "n/a" "2023_Koptekin_SouthwestAsia" "n/a" "n/a" -"sha008" "F" "Iran_ShahTepe_BA" "n/a" "n/a" "n/a" "n/a" "n/a" "S5, FII" " Iran" "Shahtepe" "n/a" 37.14918344 54.65098268 "contextual" "n/a" "n/a" "n/a" 3200 5100 3100 "n/a" "K1a12a" "female" "Petrous" 2 "n/a" "Shotgun" "minus" "ds" "diploid" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "PRJEB51705" "n/a" "2023_Koptekin_SouthwestAsia" "n/a" "n/a" -"BOG024" "M" "Anatolia_Bogazkoy_Roman" "n/a" "n/a" "n/a" "n/a" "n/a" "107-329" " Turkey" "Boğazköy" "n/a" 40.02 34.61 "contextual" "n/a" "n/a" "n/a" 130 1790 190 "n/a" "H13c1a" "J" "Petrous" 2 "n/a" "Shotgun" "minus" "ds" "diploid" "n/a" "n/a" "n/a" "n/a" "n/a" "0.005964572 0.002726913" "n/a" "n/a" "n/a" "PRJEB51705" "n/a" "2023_Koptekin_SouthwestAsia" "n/a" "n/a" -"sha014" "M" "Iran_ShahTepe_BA" "n/a" "n/a" "n/a" "n/a" "n/a" "S3, GIII" " Iran" "Shahtepe" "n/a" 37.14918344 54.65098268 "contextual" "n/a" "n/a" "n/a" 3200 5100 3100 "n/a" "HV13b" "T1a" "Tooth" 2 "n/a" "Shotgun" "minus" "ds" "diploid" "n/a" "n/a" "n/a" "n/a" "n/a" "0.02839552 0.02088079" "n/a" "n/a" "n/a" "PRJEB51705" "n/a" "2023_Koptekin_SouthwestAsia" "n/a" "n/a" -"sha010" "F" "Iran_ShahTepe_BA" "n/a" "n/a" "n/a" "n/a" "n/a" "S4, FIII" " Iran" "Shahtepe" "n/a" 37.14918344 54.65098268 "contextual" "n/a" "n/a" "n/a" 3200 5100 3100 "n/a" "HV2" "female" "Petrous" 2 "n/a" "Shotgun" "minus" "ds" "diploid" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "PRJEB51705" "n/a" "2023_Koptekin_SouthwestAsia" "n/a" "n/a" -"sha007" "F" "Iran_ShahTepe_BA" "n/a" "n/a" "n/a" "n/a" "n/a" "S3, EIII" " Iran" "Shahtepe" "n/a" 37.14918344 54.65098268 "C14" "Ua-70799" 4544 33 3368 5184 3100 "n/a" "HV13b" "female" "Tooth" 2 "n/a" "Shotgun" "minus" "ds" "diploid" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "PRJEB51705" "n/a" "2023_Koptekin_SouthwestAsia" "n/a" "n/a" -"sha003" "F" "Iran_ShahTepe_BA" "n/a" "n/a" "n/a" "n/a" "n/a" "S2, BIII" " Iran" "Shahtepe" "n/a" 37.14918344 54.65098268 "contextual" "n/a" "n/a" "n/a" 3200 5100 3100 "n/a" "H14" "female" "Tooth" 2 "n/a" "Shotgun" "minus" "ds" "diploid" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "n/a" "PRJEB51705" "n/a" "2023_Koptekin_SouthwestAsia" "n/a" "n/a" +Poseidon_ID Genetic_Sex Group_Name Alternative_IDs Relation_To Relation_Degree Relation_Type Relation_Note Collection_ID Country Location Site Latitude Longitude Date_Type Date_C14_Labnr Date_C14_Uncal_BP Date_C14_Uncal_BP_Err Date_BC_AD_Start Date_BC_AD_Stop Date_BC_AD_Median_BC Date_Note MT_Haplogroup Y_Haplogroup Source_Tissue Nr_Libraries Library_Names Capture_Type UDG Library_Built Genotype_Ploidy Data_Preparation_Pipeline_URL Endogenous Nr_SNPs Coverage_on_Target_SNPs Damage Contamination Contamination_Err Contamination_Meas Contamination_Note Genetic_Source_Accession_IDs Primary_Contact Publication Note Keywords +G31 M Greece_Perachora_BA n/a n/a n/a n/a n/a ΑΠ, #31_6 Greece Perachora n/a 38.03 22.87 contextual n/a n/a n/a -2700 -2200 -2450 n/a J1c2 BT Petrous 37 n/a Shotgun mixed ds n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a 2023_Koptekin_SouthwestAsia n/a n/a +G65 F Greece_Perachora_B n/a n/a n/a n/a n/a ΚΟ 37 / Π1022 ΛΒ Β4, #65_1 Greece Perachora n/a 38.03 22.87 contextual n/a n/a n/a -2700 -2200 -2450 n/a T2c1d+152 female Petrous 2 n/a Shotgun mixed ds n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a 2023_Koptekin_SouthwestAsia n/a n/a +G66 F Greece_Perachora_BA n/a n/a n/a n/a n/a P1008 PB4, #66 Greece Perachora n/a 38.03 22.87 contextual n/a n/a n/a -2700 -2200 -2450 n/a H female Petrous 2 n/a Shotgun mixed ds n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a 2023_Koptekin_SouthwestAsia n/a n/a +G62 M Greece_Perachora_BA n/a n/a n/a n/a n/a KO 37 / Π920, #62_1; KO 37 / Π920, #62_3 Greece Perachora n/a 38.03 22.87 contextual n/a n/a n/a -2700 -2200 -2450 n/a J1c G2a2b2a Petrous 4 n/a Shotgun mixed ds n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a 2023_Koptekin_SouthwestAsia n/a n/a +G76a F Greece_Perachora_BA n/a n/a n/a n/a n/a KO 37 / Π920, #62_2; Π934α, #76 Greece Perachora n/a 38.03 22.87 C14 Beta-438877 3950 30 -2569 -2340 -2455 n/a T2c1+146 female Petrous, Tooth 6 n/a Shotgun minus ds diploid n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a 2023_Koptekin_SouthwestAsia n/a n/a +mus006 M Anatolia_Musular_N n/a n/a n/a n/a n/a SK6 Turkey Musular n/a 38.35 34.22 C14 TÜBİTAK- 671 8104 35 -7180 -7039 -7110 n/a N1a1a1 CT Petrous 3 n/a Shotgun minus ds diploid n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a 2023_Koptekin_SouthwestAsia n/a n/a +geo029 M Georgia_Didnauri_BA n/a n/a n/a n/a n/a N 14 / map number 46 Georgia Didnauri n/a 41.46 46.11 C14 Ua-65812 2932 28 -1220 -1016 -1118 n/a I5c R1b1a2a2 M3 sin mand + Pm1 dex mand 1 n/a Shotgun minus ds diploid n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a 2023_Koptekin_SouthwestAsia n/a n/a +zrj003 M Azerbaijan_Shamakhi_IA n/a n/a n/a n/a n/a Shamakhi III Azerbaijan Shamakhi n/a 40.35 47.76 C14 Ua-65816 1797 28 -206 -347 276 n/a K1a19 J Tooth 1 n/a Shotgun minus ds diploid n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a 2023_Koptekin_SouthwestAsia n/a n/a +geo005 M Georgia_Didnauri_BA n/a n/a n/a n/a n/a N1 / Shuagori Georgia Didnauri n/a 41.46 46.11 C14 Ua-65808 2949 30 -1258 -1049 -1154 n/a U7b R1b1a2a2 Bone fragment 3 n/a Shotgun minus ds diploid n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a 2023_Koptekin_SouthwestAsia n/a n/a +Gordion002 F Anatolia_Gordion_IA n/a n/a n/a n/a n/a YH41500 Turkey Gordion n/a 39.65 31.97 contextual n/a n/a n/a -333 0 -166 n/a K1a3 female Petrous 2 n/a Shotgun minus ds diploid n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a 2023_Koptekin_SouthwestAsia n/a n/a +geo006 M Georgia_Didnauri_BA n/a n/a n/a n/a n/a N 8A / map number:14 Georgia Didnauri n/a 41.46 46.11 C14 Ua-65809 2797 30 -1041 -837 -939 n/a X2 O1b1a2 M max 2 n/a Shotgun minus ds diploid n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a 2023_Koptekin_SouthwestAsia n/a n/a +mus005 F Anatolia_Musular_N n/a n/a n/a n/a n/a SK5 Turkey Musular n/a 38.35 34.22 C14 TÜBİTAK-1151 8250 35 -7377 -7167 -7272 n/a K1a4 female Petrous 5 n/a Shotgun minus ds diploid n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a 2023_Koptekin_SouthwestAsia n/a n/a +ulu117 F Anatolia_Ulucak_BA n/a n/a n/a n/a n/a M7a Turkey Ulucak n/a 38.48 27.35 contextual n/a n/a n/a -4000 -3000 -3500 n/a J1c11 female Petrous 3 n/a Shotgun minus ds diploid n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a 2023_Koptekin_SouthwestAsia n/a n/a +G37 M Greece_Sarakenos_BA n/a n/a n/a n/a n/a G37 Greece Sarakenos n/a 38.45 23.22 C14 Beta-438876 3920 30 -2325 -2300 -2313 n/a H11a2 J Tooth 3 n/a Shotgun minus ds diploid n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a 2023_Koptekin_SouthwestAsia n/a n/a +gur019 F Georgia_Nazarlebi_BA n/a n/a n/a n/a n/a N19 Georgia Nazarlebi n/a 41.33 46.23 contextual n/a n/a n/a -1500 -1000 -1250 n/a K1a4b female Tooth 2 n/a Shotgun minus ds diploid n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a 2023_Koptekin_SouthwestAsia n/a n/a +G23 M Greece_Theopetra_BA n/a n/a n/a n/a n/a G23 Greece Theopetra n/a 39.68 21.68 C14 Beta-438875 3800 30 -2335 -2140 -2238 n/a H5 I Tooth 4 n/a Shotgun minus ds diploid n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a 2023_Koptekin_SouthwestAsia n/a n/a +sha006 F Iran_ShahTepe_BA n/a n/a n/a n/a n/a S9, EII Iran Shahtepe n/a 37.14918344 54.65098268 contextual n/a n/a n/a -3200 -3100 -3150 n/a J1b1b1 female Tooth 2 n/a Shotgun minus ds diploid n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a 2023_Koptekin_SouthwestAsia n/a n/a +gur017 M Georgia_Nazarlebi_BA n/a n/a n/a n/a n/a N17 Georgia Nazarlebi n/a 41.33 46.23 contextual n/a n/a n/a -1500 -1000 -1250 n/a N1a1a1a I Petrous 2 n/a Shotgun minus ds diploid n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a 2023_Koptekin_SouthwestAsia n/a n/a +geo017 F Georgia_Doghlauri_BA n/a n/a n/a n/a n/a N 93 Georgia Doghlauri n/a 41.68 44.77 C14 Ua-65811 2987 28 -1373 -1118 -1246 n/a H4b female Bone fragment 1 n/a Shotgun minus ds diploid n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a 2023_Koptekin_SouthwestAsia n/a n/a +sha012 M Iran_ShahTepe_BA n/a n/a n/a n/a n/a S21, FIII Iran Shahtepe n/a 37.14918344 54.65098268 contextual n/a n/a n/a -3200 -3100 -3150 n/a U1a3 J Tooth 2 n/a Shotgun minus ds diploid n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a 2023_Koptekin_SouthwestAsia n/a n/a +gur016 M Georgia_Nazarlebi_B n/a n/a n/a n/a n/a N16 Georgia Nazarlebi n/a 41.33 46.23 contextual n/a n/a n/a -1500 -1000 -1250 n/a K A Petrous 2 n/a Shotgun minus ds diploid n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a 2023_Koptekin_SouthwestAsia n/a n/a +geo015 M Georgia_Doghlauri_KuraAraxes_BA n/a n/a n/a n/a n/a N 39 Georgia Doghlauri n/a 41.68 44.77 C14 Ua-65810 4321 32 -3016 -2886 -2951 n/a K1a J2a1b1 Bone fragment 1 n/a Shotgun minus ds diploid n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a 2023_Koptekin_SouthwestAsia n/a n/a +CTG025 F Anatolia_CineTepecik_BA n/a n/a n/a n/a n/a g25 Turkey Çine-Tepecik n/a 37.6 28.01 C14 TÜBİTAK-744 3551 31 -1977 -1772 -1875 n/a W6b female Petrous 3 n/a Shotgun minus ds diploid n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a 2023_Koptekin_SouthwestAsia n/a n/a +Gordion001 M Anatolia_Gordion_IA n/a n/a n/a n/a n/a YH36611 Turkey Gordion n/a 39.65 31.97 contextual n/a n/a n/a -333 0 -166 n/a H14a J2a1 Petrous 1 n/a Shotgun minus ds diploid n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a 2023_Koptekin_SouthwestAsia n/a n/a +sha004 M Iran_ShahTepe_BA n/a n/a n/a n/a n/a S4, BIII Iran Shahtepe n/a 37.14918344 54.65098268 C14 Ua-70798 4560 33 -3487 -3101 -3294 n/a I1a J Tooth 2 n/a Shotgun minus ds diploid n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a 2023_Koptekin_SouthwestAsia n/a n/a +BOG028 F Anatolia_Bogazkoy_Ottoman n/a n/a n/a n/a n/a 020-074 Turkey Boğazköy n/a 40.02 34.61 contextual n/a n/a n/a -1000 -1900 1450 n/a HV1b3b female Petrous 2 n/a Shotgun minus ds diploid n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a 2023_Koptekin_SouthwestAsia n/a n/a +BOG020 M Anatolia_Bogazkoy_Roman n/a n/a n/a n/a n/a 605-620 Turkey Boğazköy n/a 40.02 34.61 contextual n/a n/a n/a -130 -190 160 n/a X2f J2a1h Petrous 2 n/a Shotgun minus ds diploid n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a 2023_Koptekin_SouthwestAsia n/a n/a +sha009 F Iran_ShahTepe_BA n/a n/a n/a n/a n/a S3, FIII Iran Shahtepe n/a 37.14918344 54.65098268 C14 Ua-70800 4484 33 -3345 -3029 -3187 n/a U5a2+16294 female Petrous 1 n/a Shotgun minus ds diploid n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a 2023_Koptekin_SouthwestAsia n/a n/a +BOG019 M Anatolia_Bogazkoy_Roman n/a n/a n/a n/a n/a 373-718 Turkey Boğazköy n/a 40.02 34.61 contextual n/a n/a n/a -100 -350 225 n/a X2n T1a1 Petrous 1 n/a Shotgun minus ds diploid n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a 2023_Koptekin_SouthwestAsia n/a n/a +sha008 F Iran_ShahTepe_BA n/a n/a n/a n/a n/a S5, FII Iran Shahtepe n/a 37.14918344 54.65098268 contextual n/a n/a n/a -3200 -3100 -3150 n/a K1a12a female Petrous 2 n/a Shotgun minus ds diploid n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a 2023_Koptekin_SouthwestAsia n/a n/a +BOG024 M Anatolia_Bogazkoy_Roman n/a n/a n/a n/a n/a 107-329 Turkey Boğazköy n/a 40.02 34.61 contextual n/a n/a n/a -130 -190 160 n/a H13c1a J Petrous 2 n/a Shotgun minus ds diploid n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a 2023_Koptekin_SouthwestAsia n/a n/a +sha014 M Iran_ShahTepe_BA n/a n/a n/a n/a n/a S3, GIII Iran Shahtepe n/a 37.14918344 54.65098268 contextual n/a n/a n/a -3200 -3100 -3150 n/a HV13b T1a Tooth 2 n/a Shotgun minus ds diploid n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a 2023_Koptekin_SouthwestAsia n/a n/a +sha010 F Iran_ShahTepe_BA n/a n/a n/a n/a n/a S4, FIII Iran Shahtepe n/a 37.14918344 54.65098268 contextual n/a n/a n/a -3200 -3100 -3150 n/a HV2 female Petrous 2 n/a Shotgun minus ds diploid n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a 2023_Koptekin_SouthwestAsia n/a n/a +sha007 F Iran_ShahTepe_BA n/a n/a n/a n/a n/a S3, EIII Iran Shahtepe n/a 37.14918344 54.65098268 C14 Ua-70799 4544 33 -3368 -3100 -3234 n/a HV13b female Tooth 2 n/a Shotgun minus ds diploid n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a 2023_Koptekin_SouthwestAsia n/a n/a +sha003 F Iran_ShahTepe_BA n/a n/a n/a n/a n/a S2, BIII Iran Shahtepe n/a 37.14918344 54.65098268 contextual n/a n/a n/a -3200 -3100 -3150 n/a H14 female Tooth 2 n/a Shotgun minus ds diploid n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a 2023_Koptekin_SouthwestAsia n/a n/a diff --git a/2023_Koptekin_SouthwestAsia/POSEIDON.yml b/2023_Koptekin_SouthwestAsia/POSEIDON.yml index dd49183e..b5530105 100644 --- a/2023_Koptekin_SouthwestAsia/POSEIDON.yml +++ b/2023_Koptekin_SouthwestAsia/POSEIDON.yml @@ -15,9 +15,9 @@ genotypeData: snpFile: 2023_Koptekin_SouthwestAsia.bim snpFileChkSum: 433fa85a23f3123bade02348e4628b75 indFile: 2023_Koptekin_SouthwestAsia.fam - indFileChkSum: 88cf545551365266a7bf6110b5819a6b + indFileChkSum: 8b4f2c66944d0c0e9796370578622eb0 snpSet: Other jannoFile: 2023_Koptekin_SouthwestAsia.janno -jannoFileChkSum: c55789693b75daad7c1a5d2a07a45cc5 +jannoFileChkSum: 03f643700ca55cd600b1ab9c0ba78341 bibFile: 2023_Koptekin_SouthwestAsia.bib bibFileChkSum: 6ba6cb04a5a5d4144b470b5df203e859 From d2d7af3e137768ab4cef2295b951cf4c56490a83 Mon Sep 17 00:00:00 2001 From: Clemens Schmid Date: Fri, 12 Jul 2024 15:29:09 +0200 Subject: [PATCH 6/7] removed empty columns from .janno file --- .../2023_Koptekin_SouthwestAsia.janno | 72 +++++++++---------- 2023_Koptekin_SouthwestAsia/POSEIDON.yml | 5 +- 2 files changed, 38 insertions(+), 39 deletions(-) diff --git a/2023_Koptekin_SouthwestAsia/2023_Koptekin_SouthwestAsia.janno b/2023_Koptekin_SouthwestAsia/2023_Koptekin_SouthwestAsia.janno index 8ac98f64..33a8e766 100644 --- a/2023_Koptekin_SouthwestAsia/2023_Koptekin_SouthwestAsia.janno +++ b/2023_Koptekin_SouthwestAsia/2023_Koptekin_SouthwestAsia.janno @@ -1,36 +1,36 @@ -Poseidon_ID Genetic_Sex Group_Name Alternative_IDs Relation_To Relation_Degree Relation_Type Relation_Note Collection_ID Country Location Site Latitude Longitude Date_Type Date_C14_Labnr Date_C14_Uncal_BP Date_C14_Uncal_BP_Err Date_BC_AD_Start Date_BC_AD_Stop Date_BC_AD_Median_BC Date_Note MT_Haplogroup Y_Haplogroup Source_Tissue Nr_Libraries Library_Names Capture_Type UDG Library_Built Genotype_Ploidy Data_Preparation_Pipeline_URL Endogenous Nr_SNPs Coverage_on_Target_SNPs Damage Contamination Contamination_Err Contamination_Meas Contamination_Note Genetic_Source_Accession_IDs Primary_Contact Publication Note Keywords -G31 M Greece_Perachora_BA n/a n/a n/a n/a n/a ΑΠ, #31_6 Greece Perachora n/a 38.03 22.87 contextual n/a n/a n/a -2700 -2200 -2450 n/a J1c2 BT Petrous 37 n/a Shotgun mixed ds n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a 2023_Koptekin_SouthwestAsia n/a n/a -G65 F Greece_Perachora_B n/a n/a n/a n/a n/a ΚΟ 37 / Π1022 ΛΒ Β4, #65_1 Greece Perachora n/a 38.03 22.87 contextual n/a n/a n/a -2700 -2200 -2450 n/a T2c1d+152 female Petrous 2 n/a Shotgun mixed ds n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a 2023_Koptekin_SouthwestAsia n/a n/a -G66 F Greece_Perachora_BA n/a n/a n/a n/a n/a P1008 PB4, #66 Greece Perachora n/a 38.03 22.87 contextual n/a n/a n/a -2700 -2200 -2450 n/a H female Petrous 2 n/a Shotgun mixed ds n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a 2023_Koptekin_SouthwestAsia n/a n/a -G62 M Greece_Perachora_BA n/a n/a n/a n/a n/a KO 37 / Π920, #62_1; KO 37 / Π920, #62_3 Greece Perachora n/a 38.03 22.87 contextual n/a n/a n/a -2700 -2200 -2450 n/a J1c G2a2b2a Petrous 4 n/a Shotgun mixed ds n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a 2023_Koptekin_SouthwestAsia n/a n/a -G76a F Greece_Perachora_BA n/a n/a n/a n/a n/a KO 37 / Π920, #62_2; Π934α, #76 Greece Perachora n/a 38.03 22.87 C14 Beta-438877 3950 30 -2569 -2340 -2455 n/a T2c1+146 female Petrous, Tooth 6 n/a Shotgun minus ds diploid n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a 2023_Koptekin_SouthwestAsia n/a n/a -mus006 M Anatolia_Musular_N n/a n/a n/a n/a n/a SK6 Turkey Musular n/a 38.35 34.22 C14 TÜBİTAK- 671 8104 35 -7180 -7039 -7110 n/a N1a1a1 CT Petrous 3 n/a Shotgun minus ds diploid n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a 2023_Koptekin_SouthwestAsia n/a n/a -geo029 M Georgia_Didnauri_BA n/a n/a n/a n/a n/a N 14 / map number 46 Georgia Didnauri n/a 41.46 46.11 C14 Ua-65812 2932 28 -1220 -1016 -1118 n/a I5c R1b1a2a2 M3 sin mand + Pm1 dex mand 1 n/a Shotgun minus ds diploid n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a 2023_Koptekin_SouthwestAsia n/a n/a -zrj003 M Azerbaijan_Shamakhi_IA n/a n/a n/a n/a n/a Shamakhi III Azerbaijan Shamakhi n/a 40.35 47.76 C14 Ua-65816 1797 28 -206 -347 276 n/a K1a19 J Tooth 1 n/a Shotgun minus ds diploid n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a 2023_Koptekin_SouthwestAsia n/a n/a -geo005 M Georgia_Didnauri_BA n/a n/a n/a n/a n/a N1 / Shuagori Georgia Didnauri n/a 41.46 46.11 C14 Ua-65808 2949 30 -1258 -1049 -1154 n/a U7b R1b1a2a2 Bone fragment 3 n/a Shotgun minus ds diploid n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a 2023_Koptekin_SouthwestAsia n/a n/a -Gordion002 F Anatolia_Gordion_IA n/a n/a n/a n/a n/a YH41500 Turkey Gordion n/a 39.65 31.97 contextual n/a n/a n/a -333 0 -166 n/a K1a3 female Petrous 2 n/a Shotgun minus ds diploid n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a 2023_Koptekin_SouthwestAsia n/a n/a -geo006 M Georgia_Didnauri_BA n/a n/a n/a n/a n/a N 8A / map number:14 Georgia Didnauri n/a 41.46 46.11 C14 Ua-65809 2797 30 -1041 -837 -939 n/a X2 O1b1a2 M max 2 n/a Shotgun minus ds diploid n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a 2023_Koptekin_SouthwestAsia n/a n/a -mus005 F Anatolia_Musular_N n/a n/a n/a n/a n/a SK5 Turkey Musular n/a 38.35 34.22 C14 TÜBİTAK-1151 8250 35 -7377 -7167 -7272 n/a K1a4 female Petrous 5 n/a Shotgun minus ds diploid n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a 2023_Koptekin_SouthwestAsia n/a n/a -ulu117 F Anatolia_Ulucak_BA n/a n/a n/a n/a n/a M7a Turkey Ulucak n/a 38.48 27.35 contextual n/a n/a n/a -4000 -3000 -3500 n/a J1c11 female Petrous 3 n/a Shotgun minus ds diploid n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a 2023_Koptekin_SouthwestAsia n/a n/a -G37 M Greece_Sarakenos_BA n/a n/a n/a n/a n/a G37 Greece Sarakenos n/a 38.45 23.22 C14 Beta-438876 3920 30 -2325 -2300 -2313 n/a H11a2 J Tooth 3 n/a Shotgun minus ds diploid n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a 2023_Koptekin_SouthwestAsia n/a n/a -gur019 F Georgia_Nazarlebi_BA n/a n/a n/a n/a n/a N19 Georgia Nazarlebi n/a 41.33 46.23 contextual n/a n/a n/a -1500 -1000 -1250 n/a K1a4b female Tooth 2 n/a Shotgun minus ds diploid n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a 2023_Koptekin_SouthwestAsia n/a n/a -G23 M Greece_Theopetra_BA n/a n/a n/a n/a n/a G23 Greece Theopetra n/a 39.68 21.68 C14 Beta-438875 3800 30 -2335 -2140 -2238 n/a H5 I Tooth 4 n/a Shotgun minus ds diploid n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a 2023_Koptekin_SouthwestAsia n/a n/a -sha006 F Iran_ShahTepe_BA n/a n/a n/a n/a n/a S9, EII Iran Shahtepe n/a 37.14918344 54.65098268 contextual n/a n/a n/a -3200 -3100 -3150 n/a J1b1b1 female Tooth 2 n/a Shotgun minus ds diploid n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a 2023_Koptekin_SouthwestAsia n/a n/a -gur017 M Georgia_Nazarlebi_BA n/a n/a n/a n/a n/a N17 Georgia Nazarlebi n/a 41.33 46.23 contextual n/a n/a n/a -1500 -1000 -1250 n/a N1a1a1a I Petrous 2 n/a Shotgun minus ds diploid n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a 2023_Koptekin_SouthwestAsia n/a n/a -geo017 F Georgia_Doghlauri_BA n/a n/a n/a n/a n/a N 93 Georgia Doghlauri n/a 41.68 44.77 C14 Ua-65811 2987 28 -1373 -1118 -1246 n/a H4b female Bone fragment 1 n/a Shotgun minus ds diploid n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a 2023_Koptekin_SouthwestAsia n/a n/a -sha012 M Iran_ShahTepe_BA n/a n/a n/a n/a n/a S21, FIII Iran Shahtepe n/a 37.14918344 54.65098268 contextual n/a n/a n/a -3200 -3100 -3150 n/a U1a3 J Tooth 2 n/a Shotgun minus ds diploid n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a 2023_Koptekin_SouthwestAsia n/a n/a -gur016 M Georgia_Nazarlebi_B n/a n/a n/a n/a n/a N16 Georgia Nazarlebi n/a 41.33 46.23 contextual n/a n/a n/a -1500 -1000 -1250 n/a K A Petrous 2 n/a Shotgun minus ds diploid n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a 2023_Koptekin_SouthwestAsia n/a n/a -geo015 M Georgia_Doghlauri_KuraAraxes_BA n/a n/a n/a n/a n/a N 39 Georgia Doghlauri n/a 41.68 44.77 C14 Ua-65810 4321 32 -3016 -2886 -2951 n/a K1a J2a1b1 Bone fragment 1 n/a Shotgun minus ds diploid n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a 2023_Koptekin_SouthwestAsia n/a n/a -CTG025 F Anatolia_CineTepecik_BA n/a n/a n/a n/a n/a g25 Turkey Çine-Tepecik n/a 37.6 28.01 C14 TÜBİTAK-744 3551 31 -1977 -1772 -1875 n/a W6b female Petrous 3 n/a Shotgun minus ds diploid n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a 2023_Koptekin_SouthwestAsia n/a n/a -Gordion001 M Anatolia_Gordion_IA n/a n/a n/a n/a n/a YH36611 Turkey Gordion n/a 39.65 31.97 contextual n/a n/a n/a -333 0 -166 n/a H14a J2a1 Petrous 1 n/a Shotgun minus ds diploid n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a 2023_Koptekin_SouthwestAsia n/a n/a -sha004 M Iran_ShahTepe_BA n/a n/a n/a n/a n/a S4, BIII Iran Shahtepe n/a 37.14918344 54.65098268 C14 Ua-70798 4560 33 -3487 -3101 -3294 n/a I1a J Tooth 2 n/a Shotgun minus ds diploid n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a 2023_Koptekin_SouthwestAsia n/a n/a -BOG028 F Anatolia_Bogazkoy_Ottoman n/a n/a n/a n/a n/a 020-074 Turkey Boğazköy n/a 40.02 34.61 contextual n/a n/a n/a -1000 -1900 1450 n/a HV1b3b female Petrous 2 n/a Shotgun minus ds diploid n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a 2023_Koptekin_SouthwestAsia n/a n/a -BOG020 M Anatolia_Bogazkoy_Roman n/a n/a n/a n/a n/a 605-620 Turkey Boğazköy n/a 40.02 34.61 contextual n/a n/a n/a -130 -190 160 n/a X2f J2a1h Petrous 2 n/a Shotgun minus ds diploid n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a 2023_Koptekin_SouthwestAsia n/a n/a -sha009 F Iran_ShahTepe_BA n/a n/a n/a n/a n/a S3, FIII Iran Shahtepe n/a 37.14918344 54.65098268 C14 Ua-70800 4484 33 -3345 -3029 -3187 n/a U5a2+16294 female Petrous 1 n/a Shotgun minus ds diploid n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a 2023_Koptekin_SouthwestAsia n/a n/a -BOG019 M Anatolia_Bogazkoy_Roman n/a n/a n/a n/a n/a 373-718 Turkey Boğazköy n/a 40.02 34.61 contextual n/a n/a n/a -100 -350 225 n/a X2n T1a1 Petrous 1 n/a Shotgun minus ds diploid n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a 2023_Koptekin_SouthwestAsia n/a n/a -sha008 F Iran_ShahTepe_BA n/a n/a n/a n/a n/a S5, FII Iran Shahtepe n/a 37.14918344 54.65098268 contextual n/a n/a n/a -3200 -3100 -3150 n/a K1a12a female Petrous 2 n/a Shotgun minus ds diploid n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a 2023_Koptekin_SouthwestAsia n/a n/a -BOG024 M Anatolia_Bogazkoy_Roman n/a n/a n/a n/a n/a 107-329 Turkey Boğazköy n/a 40.02 34.61 contextual n/a n/a n/a -130 -190 160 n/a H13c1a J Petrous 2 n/a Shotgun minus ds diploid n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a 2023_Koptekin_SouthwestAsia n/a n/a -sha014 M Iran_ShahTepe_BA n/a n/a n/a n/a n/a S3, GIII Iran Shahtepe n/a 37.14918344 54.65098268 contextual n/a n/a n/a -3200 -3100 -3150 n/a HV13b T1a Tooth 2 n/a Shotgun minus ds diploid n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a 2023_Koptekin_SouthwestAsia n/a n/a -sha010 F Iran_ShahTepe_BA n/a n/a n/a n/a n/a S4, FIII Iran Shahtepe n/a 37.14918344 54.65098268 contextual n/a n/a n/a -3200 -3100 -3150 n/a HV2 female Petrous 2 n/a Shotgun minus ds diploid n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a 2023_Koptekin_SouthwestAsia n/a n/a -sha007 F Iran_ShahTepe_BA n/a n/a n/a n/a n/a S3, EIII Iran Shahtepe n/a 37.14918344 54.65098268 C14 Ua-70799 4544 33 -3368 -3100 -3234 n/a HV13b female Tooth 2 n/a Shotgun minus ds diploid n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a 2023_Koptekin_SouthwestAsia n/a n/a -sha003 F Iran_ShahTepe_BA n/a n/a n/a n/a n/a S2, BIII Iran Shahtepe n/a 37.14918344 54.65098268 contextual n/a n/a n/a -3200 -3100 -3150 n/a H14 female Tooth 2 n/a Shotgun minus ds diploid n/a n/a n/a n/a n/a n/a n/a n/a n/a PRJEB51705 n/a 2023_Koptekin_SouthwestAsia n/a n/a +Poseidon_ID Genetic_Sex Group_Name Collection_ID Country Location Latitude Longitude Date_Type Date_C14_Labnr Date_C14_Uncal_BP Date_C14_Uncal_BP_Err Date_BC_AD_Start Date_BC_AD_Stop Date_BC_AD_Median_BC MT_Haplogroup Y_Haplogroup Source_Tissue Nr_Libraries Capture_Type UDG Library_Built Genotype_Ploidy Genetic_Source_Accession_IDs Publication +G31 M Greece_Perachora_BA ΑΠ, #31_6 Greece Perachora 38.03 22.87 contextual n/a n/a n/a -2700 -2200 -2450 J1c2 BT Petrous 37 Shotgun mixed ds n/a PRJEB51705 2023_Koptekin_SouthwestAsia +G65 F Greece_Perachora_B ΚΟ 37 / Π1022 ΛΒ Β4, #65_1 Greece Perachora 38.03 22.87 contextual n/a n/a n/a -2700 -2200 -2450 T2c1d+152 female Petrous 2 Shotgun mixed ds n/a PRJEB51705 2023_Koptekin_SouthwestAsia +G66 F Greece_Perachora_BA P1008 PB4, #66 Greece Perachora 38.03 22.87 contextual n/a n/a n/a -2700 -2200 -2450 H female Petrous 2 Shotgun mixed ds n/a PRJEB51705 2023_Koptekin_SouthwestAsia +G62 M Greece_Perachora_BA KO 37 / Π920, #62_1; KO 37 / Π920, #62_3 Greece Perachora 38.03 22.87 contextual n/a n/a n/a -2700 -2200 -2450 J1c G2a2b2a Petrous 4 Shotgun mixed ds n/a PRJEB51705 2023_Koptekin_SouthwestAsia +G76a F Greece_Perachora_BA KO 37 / Π920, #62_2; Π934α, #76 Greece Perachora 38.03 22.87 C14 Beta-438877 3950 30 -2569 -2340 -2455 T2c1+146 female Petrous, Tooth 6 Shotgun minus ds diploid PRJEB51705 2023_Koptekin_SouthwestAsia +mus006 M Anatolia_Musular_N SK6 Turkey Musular 38.35 34.22 C14 TÜBİTAK-671 8104 35 -7180 -7039 -7110 N1a1a1 CT Petrous 3 Shotgun minus ds diploid PRJEB51705 2023_Koptekin_SouthwestAsia +geo029 M Georgia_Didnauri_BA N 14 / map number 46 Georgia Didnauri 41.46 46.11 C14 Ua-65812 2932 28 -1220 -1016 -1118 I5c R1b1a2a2 M3 sin mand + Pm1 dex mand 1 Shotgun minus ds diploid PRJEB51705 2023_Koptekin_SouthwestAsia +zrj003 M Azerbaijan_Shamakhi_IA Shamakhi III Azerbaijan Shamakhi 40.35 47.76 C14 Ua-65816 1797 28 -206 -347 276 K1a19 J Tooth 1 Shotgun minus ds diploid PRJEB51705 2023_Koptekin_SouthwestAsia +geo005 M Georgia_Didnauri_BA N1 / Shuagori Georgia Didnauri 41.46 46.11 C14 Ua-65808 2949 30 -1258 -1049 -1154 U7b R1b1a2a2 Bone fragment 3 Shotgun minus ds diploid PRJEB51705 2023_Koptekin_SouthwestAsia +Gordion002 F Anatolia_Gordion_IA YH41500 Turkey Gordion 39.65 31.97 contextual n/a n/a n/a -333 0 -166 K1a3 female Petrous 2 Shotgun minus ds diploid PRJEB51705 2023_Koptekin_SouthwestAsia +geo006 M Georgia_Didnauri_BA N 8A / map number:14 Georgia Didnauri 41.46 46.11 C14 Ua-65809 2797 30 -1041 -837 -939 X2 O1b1a2 M max 2 Shotgun minus ds diploid PRJEB51705 2023_Koptekin_SouthwestAsia +mus005 F Anatolia_Musular_N SK5 Turkey Musular 38.35 34.22 C14 TÜBİTAK-1151 8250 35 -7377 -7167 -7272 K1a4 female Petrous 5 Shotgun minus ds diploid PRJEB51705 2023_Koptekin_SouthwestAsia +ulu117 F Anatolia_Ulucak_BA M7a Turkey Ulucak 38.48 27.35 contextual n/a n/a n/a -4000 -3000 -3500 J1c11 female Petrous 3 Shotgun minus ds diploid PRJEB51705 2023_Koptekin_SouthwestAsia +G37 M Greece_Sarakenos_BA G37 Greece Sarakenos 38.45 23.22 C14 Beta-438876 3920 30 -2325 -2300 -2313 H11a2 J Tooth 3 Shotgun minus ds diploid PRJEB51705 2023_Koptekin_SouthwestAsia +gur019 F Georgia_Nazarlebi_BA N19 Georgia Nazarlebi 41.33 46.23 contextual n/a n/a n/a -1500 -1000 -1250 K1a4b female Tooth 2 Shotgun minus ds diploid PRJEB51705 2023_Koptekin_SouthwestAsia +G23 M Greece_Theopetra_BA G23 Greece Theopetra 39.68 21.68 C14 Beta-438875 3800 30 -2335 -2140 -2238 H5 I Tooth 4 Shotgun minus ds diploid PRJEB51705 2023_Koptekin_SouthwestAsia +sha006 F Iran_ShahTepe_BA S9, EII Iran Shahtepe 37.14918344 54.65098268 contextual n/a n/a n/a -3200 -3100 -3150 J1b1b1 female Tooth 2 Shotgun minus ds diploid PRJEB51705 2023_Koptekin_SouthwestAsia +gur017 M Georgia_Nazarlebi_BA N17 Georgia Nazarlebi 41.33 46.23 contextual n/a n/a n/a -1500 -1000 -1250 N1a1a1a I Petrous 2 Shotgun minus ds diploid PRJEB51705 2023_Koptekin_SouthwestAsia +geo017 F Georgia_Doghlauri_BA N 93 Georgia Doghlauri 41.68 44.77 C14 Ua-65811 2987 28 -1373 -1118 -1246 H4b female Bone fragment 1 Shotgun minus ds diploid PRJEB51705 2023_Koptekin_SouthwestAsia +sha012 M Iran_ShahTepe_BA S21, FIII Iran Shahtepe 37.14918344 54.65098268 contextual n/a n/a n/a -3200 -3100 -3150 U1a3 J Tooth 2 Shotgun minus ds diploid PRJEB51705 2023_Koptekin_SouthwestAsia +gur016 M Georgia_Nazarlebi_B N16 Georgia Nazarlebi 41.33 46.23 contextual n/a n/a n/a -1500 -1000 -1250 K A Petrous 2 Shotgun minus ds diploid PRJEB51705 2023_Koptekin_SouthwestAsia +geo015 M Georgia_Doghlauri_KuraAraxes_BA N 39 Georgia Doghlauri 41.68 44.77 C14 Ua-65810 4321 32 -3016 -2886 -2951 K1a J2a1b1 Bone fragment 1 Shotgun minus ds diploid PRJEB51705 2023_Koptekin_SouthwestAsia +CTG025 F Anatolia_CineTepecik_BA g25 Turkey Çine-Tepecik 37.6 28.01 C14 TÜBİTAK-744 3551 31 -1977 -1772 -1875 W6b female Petrous 3 Shotgun minus ds diploid PRJEB51705 2023_Koptekin_SouthwestAsia +Gordion001 M Anatolia_Gordion_IA YH36611 Turkey Gordion 39.65 31.97 contextual n/a n/a n/a -333 0 -166 H14a J2a1 Petrous 1 Shotgun minus ds diploid PRJEB51705 2023_Koptekin_SouthwestAsia +sha004 M Iran_ShahTepe_BA S4, BIII Iran Shahtepe 37.14918344 54.65098268 C14 Ua-70798 4560 33 -3487 -3101 -3294 I1a J Tooth 2 Shotgun minus ds diploid PRJEB51705 2023_Koptekin_SouthwestAsia +BOG028 F Anatolia_Bogazkoy_Ottoman 020-074 Turkey Boğazköy 40.02 34.61 contextual n/a n/a n/a -1000 -1900 1450 HV1b3b female Petrous 2 Shotgun minus ds diploid PRJEB51705 2023_Koptekin_SouthwestAsia +BOG020 M Anatolia_Bogazkoy_Roman 605-620 Turkey Boğazköy 40.02 34.61 contextual n/a n/a n/a -130 -190 160 X2f J2a1h Petrous 2 Shotgun minus ds diploid PRJEB51705 2023_Koptekin_SouthwestAsia +sha009 F Iran_ShahTepe_BA S3, FIII Iran Shahtepe 37.14918344 54.65098268 C14 Ua-70800 4484 33 -3345 -3029 -3187 U5a2+16294 female Petrous 1 Shotgun minus ds diploid PRJEB51705 2023_Koptekin_SouthwestAsia +BOG019 M Anatolia_Bogazkoy_Roman 373-718 Turkey Boğazköy 40.02 34.61 contextual n/a n/a n/a -100 -350 225 X2n T1a1 Petrous 1 Shotgun minus ds diploid PRJEB51705 2023_Koptekin_SouthwestAsia +sha008 F Iran_ShahTepe_BA S5, FII Iran Shahtepe 37.14918344 54.65098268 contextual n/a n/a n/a -3200 -3100 -3150 K1a12a female Petrous 2 Shotgun minus ds diploid PRJEB51705 2023_Koptekin_SouthwestAsia +BOG024 M Anatolia_Bogazkoy_Roman 107-329 Turkey Boğazköy 40.02 34.61 contextual n/a n/a n/a -130 -190 160 H13c1a J Petrous 2 Shotgun minus ds diploid PRJEB51705 2023_Koptekin_SouthwestAsia +sha014 M Iran_ShahTepe_BA S3, GIII Iran Shahtepe 37.14918344 54.65098268 contextual n/a n/a n/a -3200 -3100 -3150 HV13b T1a Tooth 2 Shotgun minus ds diploid PRJEB51705 2023_Koptekin_SouthwestAsia +sha010 F Iran_ShahTepe_BA S4, FIII Iran Shahtepe 37.14918344 54.65098268 contextual n/a n/a n/a -3200 -3100 -3150 HV2 female Petrous 2 Shotgun minus ds diploid PRJEB51705 2023_Koptekin_SouthwestAsia +sha007 F Iran_ShahTepe_BA S3, EIII Iran Shahtepe 37.14918344 54.65098268 C14 Ua-70799 4544 33 -3368 -3100 -3234 HV13b female Tooth 2 Shotgun minus ds diploid PRJEB51705 2023_Koptekin_SouthwestAsia +sha003 F Iran_ShahTepe_BA S2, BIII Iran Shahtepe 37.14918344 54.65098268 contextual n/a n/a n/a -3200 -3100 -3150 H14 female Tooth 2 Shotgun minus ds diploid PRJEB51705 2023_Koptekin_SouthwestAsia diff --git a/2023_Koptekin_SouthwestAsia/POSEIDON.yml b/2023_Koptekin_SouthwestAsia/POSEIDON.yml index b5530105..2ddca14a 100644 --- a/2023_Koptekin_SouthwestAsia/POSEIDON.yml +++ b/2023_Koptekin_SouthwestAsia/POSEIDON.yml @@ -1,7 +1,6 @@ poseidonVersion: 2.7.1 title: 2023_Koptekin_SouthwestAsia -description: Spatial and temporal heterogeneity in human mobility patterns in Holocene - Southwest Asia and the East Mediterranean +description: Spatial and temporal heterogeneity in human mobility patterns in Holocene Southwest Asia and the East Mediterranean contributor: - name: Dhananjaya Aththayanaka email: dhananjaya_aththanayaka@eva.mpg.de @@ -18,6 +17,6 @@ genotypeData: indFileChkSum: 8b4f2c66944d0c0e9796370578622eb0 snpSet: Other jannoFile: 2023_Koptekin_SouthwestAsia.janno -jannoFileChkSum: 03f643700ca55cd600b1ab9c0ba78341 +jannoFileChkSum: 7825af241f39d3969feef4d4fb46ca64 bibFile: 2023_Koptekin_SouthwestAsia.bib bibFileChkSum: 6ba6cb04a5a5d4144b470b5df203e859 From 68b844f03f85e5cb0bcc7105da278aef1af31f65 Mon Sep 17 00:00:00 2001 From: Clemens Schmid Date: Fri, 12 Jul 2024 15:33:17 +0200 Subject: [PATCH 7/7] replaced citation key: _ may be an issue for some implementations --- .../2023_Koptekin_SouthwestAsia.bib | 2 +- .../2023_Koptekin_SouthwestAsia.janno | 70 +++++++++---------- 2023_Koptekin_SouthwestAsia/POSEIDON.yml | 4 +- 3 files changed, 38 insertions(+), 38 deletions(-) diff --git a/2023_Koptekin_SouthwestAsia/2023_Koptekin_SouthwestAsia.bib b/2023_Koptekin_SouthwestAsia/2023_Koptekin_SouthwestAsia.bib index 269f8507..e1c8f849 100644 --- a/2023_Koptekin_SouthwestAsia/2023_Koptekin_SouthwestAsia.bib +++ b/2023_Koptekin_SouthwestAsia/2023_Koptekin_SouthwestAsia.bib @@ -1,4 +1,4 @@ -@article{2023_Koptekin_SouthwestAsia, +@article{Koptekin2023SouthwestAsia, title = {Spatial and temporal heterogeneity in human mobility patterns in Holocene Southwest Asia and the East Mediterranean}, volume = {33}, ISSN = {0960-9822}, diff --git a/2023_Koptekin_SouthwestAsia/2023_Koptekin_SouthwestAsia.janno b/2023_Koptekin_SouthwestAsia/2023_Koptekin_SouthwestAsia.janno index 33a8e766..c2dee42b 100644 --- a/2023_Koptekin_SouthwestAsia/2023_Koptekin_SouthwestAsia.janno +++ b/2023_Koptekin_SouthwestAsia/2023_Koptekin_SouthwestAsia.janno @@ -1,36 +1,36 @@ Poseidon_ID Genetic_Sex Group_Name Collection_ID Country Location Latitude Longitude Date_Type Date_C14_Labnr Date_C14_Uncal_BP Date_C14_Uncal_BP_Err Date_BC_AD_Start Date_BC_AD_Stop Date_BC_AD_Median_BC MT_Haplogroup Y_Haplogroup Source_Tissue Nr_Libraries Capture_Type UDG Library_Built Genotype_Ploidy Genetic_Source_Accession_IDs Publication -G31 M Greece_Perachora_BA ΑΠ, #31_6 Greece Perachora 38.03 22.87 contextual n/a n/a n/a -2700 -2200 -2450 J1c2 BT Petrous 37 Shotgun mixed ds n/a PRJEB51705 2023_Koptekin_SouthwestAsia -G65 F Greece_Perachora_B ΚΟ 37 / Π1022 ΛΒ Β4, #65_1 Greece Perachora 38.03 22.87 contextual n/a n/a n/a -2700 -2200 -2450 T2c1d+152 female Petrous 2 Shotgun mixed ds n/a PRJEB51705 2023_Koptekin_SouthwestAsia -G66 F Greece_Perachora_BA P1008 PB4, #66 Greece Perachora 38.03 22.87 contextual n/a n/a n/a -2700 -2200 -2450 H female Petrous 2 Shotgun mixed ds n/a PRJEB51705 2023_Koptekin_SouthwestAsia -G62 M Greece_Perachora_BA KO 37 / Π920, #62_1; KO 37 / Π920, #62_3 Greece Perachora 38.03 22.87 contextual n/a n/a n/a -2700 -2200 -2450 J1c G2a2b2a Petrous 4 Shotgun mixed ds n/a PRJEB51705 2023_Koptekin_SouthwestAsia -G76a F Greece_Perachora_BA KO 37 / Π920, #62_2; Π934α, #76 Greece Perachora 38.03 22.87 C14 Beta-438877 3950 30 -2569 -2340 -2455 T2c1+146 female Petrous, Tooth 6 Shotgun minus ds diploid PRJEB51705 2023_Koptekin_SouthwestAsia -mus006 M Anatolia_Musular_N SK6 Turkey Musular 38.35 34.22 C14 TÜBİTAK-671 8104 35 -7180 -7039 -7110 N1a1a1 CT Petrous 3 Shotgun minus ds diploid PRJEB51705 2023_Koptekin_SouthwestAsia -geo029 M Georgia_Didnauri_BA N 14 / map number 46 Georgia Didnauri 41.46 46.11 C14 Ua-65812 2932 28 -1220 -1016 -1118 I5c R1b1a2a2 M3 sin mand + Pm1 dex mand 1 Shotgun minus ds diploid PRJEB51705 2023_Koptekin_SouthwestAsia -zrj003 M Azerbaijan_Shamakhi_IA Shamakhi III Azerbaijan Shamakhi 40.35 47.76 C14 Ua-65816 1797 28 -206 -347 276 K1a19 J Tooth 1 Shotgun minus ds diploid PRJEB51705 2023_Koptekin_SouthwestAsia -geo005 M Georgia_Didnauri_BA N1 / Shuagori Georgia Didnauri 41.46 46.11 C14 Ua-65808 2949 30 -1258 -1049 -1154 U7b R1b1a2a2 Bone fragment 3 Shotgun minus ds diploid PRJEB51705 2023_Koptekin_SouthwestAsia -Gordion002 F Anatolia_Gordion_IA YH41500 Turkey Gordion 39.65 31.97 contextual n/a n/a n/a -333 0 -166 K1a3 female Petrous 2 Shotgun minus ds diploid PRJEB51705 2023_Koptekin_SouthwestAsia -geo006 M Georgia_Didnauri_BA N 8A / map number:14 Georgia Didnauri 41.46 46.11 C14 Ua-65809 2797 30 -1041 -837 -939 X2 O1b1a2 M max 2 Shotgun minus ds diploid PRJEB51705 2023_Koptekin_SouthwestAsia -mus005 F Anatolia_Musular_N SK5 Turkey Musular 38.35 34.22 C14 TÜBİTAK-1151 8250 35 -7377 -7167 -7272 K1a4 female Petrous 5 Shotgun minus ds diploid PRJEB51705 2023_Koptekin_SouthwestAsia -ulu117 F Anatolia_Ulucak_BA M7a Turkey Ulucak 38.48 27.35 contextual n/a n/a n/a -4000 -3000 -3500 J1c11 female Petrous 3 Shotgun minus ds diploid PRJEB51705 2023_Koptekin_SouthwestAsia -G37 M Greece_Sarakenos_BA G37 Greece Sarakenos 38.45 23.22 C14 Beta-438876 3920 30 -2325 -2300 -2313 H11a2 J Tooth 3 Shotgun minus ds diploid PRJEB51705 2023_Koptekin_SouthwestAsia -gur019 F Georgia_Nazarlebi_BA N19 Georgia Nazarlebi 41.33 46.23 contextual n/a n/a n/a -1500 -1000 -1250 K1a4b female Tooth 2 Shotgun minus ds diploid PRJEB51705 2023_Koptekin_SouthwestAsia -G23 M Greece_Theopetra_BA G23 Greece Theopetra 39.68 21.68 C14 Beta-438875 3800 30 -2335 -2140 -2238 H5 I Tooth 4 Shotgun minus ds diploid PRJEB51705 2023_Koptekin_SouthwestAsia -sha006 F Iran_ShahTepe_BA S9, EII Iran Shahtepe 37.14918344 54.65098268 contextual n/a n/a n/a -3200 -3100 -3150 J1b1b1 female Tooth 2 Shotgun minus ds diploid PRJEB51705 2023_Koptekin_SouthwestAsia -gur017 M Georgia_Nazarlebi_BA N17 Georgia Nazarlebi 41.33 46.23 contextual n/a n/a n/a -1500 -1000 -1250 N1a1a1a I Petrous 2 Shotgun minus ds diploid PRJEB51705 2023_Koptekin_SouthwestAsia -geo017 F Georgia_Doghlauri_BA N 93 Georgia Doghlauri 41.68 44.77 C14 Ua-65811 2987 28 -1373 -1118 -1246 H4b female Bone fragment 1 Shotgun minus ds diploid PRJEB51705 2023_Koptekin_SouthwestAsia -sha012 M Iran_ShahTepe_BA S21, FIII Iran Shahtepe 37.14918344 54.65098268 contextual n/a n/a n/a -3200 -3100 -3150 U1a3 J Tooth 2 Shotgun minus ds diploid PRJEB51705 2023_Koptekin_SouthwestAsia -gur016 M Georgia_Nazarlebi_B N16 Georgia Nazarlebi 41.33 46.23 contextual n/a n/a n/a -1500 -1000 -1250 K A Petrous 2 Shotgun minus ds diploid PRJEB51705 2023_Koptekin_SouthwestAsia -geo015 M Georgia_Doghlauri_KuraAraxes_BA N 39 Georgia Doghlauri 41.68 44.77 C14 Ua-65810 4321 32 -3016 -2886 -2951 K1a J2a1b1 Bone fragment 1 Shotgun minus ds diploid PRJEB51705 2023_Koptekin_SouthwestAsia -CTG025 F Anatolia_CineTepecik_BA g25 Turkey Çine-Tepecik 37.6 28.01 C14 TÜBİTAK-744 3551 31 -1977 -1772 -1875 W6b female Petrous 3 Shotgun minus ds diploid PRJEB51705 2023_Koptekin_SouthwestAsia -Gordion001 M Anatolia_Gordion_IA YH36611 Turkey Gordion 39.65 31.97 contextual n/a n/a n/a -333 0 -166 H14a J2a1 Petrous 1 Shotgun minus ds diploid PRJEB51705 2023_Koptekin_SouthwestAsia -sha004 M Iran_ShahTepe_BA S4, BIII Iran Shahtepe 37.14918344 54.65098268 C14 Ua-70798 4560 33 -3487 -3101 -3294 I1a J Tooth 2 Shotgun minus ds diploid PRJEB51705 2023_Koptekin_SouthwestAsia -BOG028 F Anatolia_Bogazkoy_Ottoman 020-074 Turkey Boğazköy 40.02 34.61 contextual n/a n/a n/a -1000 -1900 1450 HV1b3b female Petrous 2 Shotgun minus ds diploid PRJEB51705 2023_Koptekin_SouthwestAsia -BOG020 M Anatolia_Bogazkoy_Roman 605-620 Turkey Boğazköy 40.02 34.61 contextual n/a n/a n/a -130 -190 160 X2f J2a1h Petrous 2 Shotgun minus ds diploid PRJEB51705 2023_Koptekin_SouthwestAsia -sha009 F Iran_ShahTepe_BA S3, FIII Iran Shahtepe 37.14918344 54.65098268 C14 Ua-70800 4484 33 -3345 -3029 -3187 U5a2+16294 female Petrous 1 Shotgun minus ds diploid PRJEB51705 2023_Koptekin_SouthwestAsia -BOG019 M Anatolia_Bogazkoy_Roman 373-718 Turkey Boğazköy 40.02 34.61 contextual n/a n/a n/a -100 -350 225 X2n T1a1 Petrous 1 Shotgun minus ds diploid PRJEB51705 2023_Koptekin_SouthwestAsia -sha008 F Iran_ShahTepe_BA S5, FII Iran Shahtepe 37.14918344 54.65098268 contextual n/a n/a n/a -3200 -3100 -3150 K1a12a female Petrous 2 Shotgun minus ds diploid PRJEB51705 2023_Koptekin_SouthwestAsia -BOG024 M Anatolia_Bogazkoy_Roman 107-329 Turkey Boğazköy 40.02 34.61 contextual n/a n/a n/a -130 -190 160 H13c1a J Petrous 2 Shotgun minus ds diploid PRJEB51705 2023_Koptekin_SouthwestAsia -sha014 M Iran_ShahTepe_BA S3, GIII Iran Shahtepe 37.14918344 54.65098268 contextual n/a n/a n/a -3200 -3100 -3150 HV13b T1a Tooth 2 Shotgun minus ds diploid PRJEB51705 2023_Koptekin_SouthwestAsia -sha010 F Iran_ShahTepe_BA S4, FIII Iran Shahtepe 37.14918344 54.65098268 contextual n/a n/a n/a -3200 -3100 -3150 HV2 female Petrous 2 Shotgun minus ds diploid PRJEB51705 2023_Koptekin_SouthwestAsia -sha007 F Iran_ShahTepe_BA S3, EIII Iran Shahtepe 37.14918344 54.65098268 C14 Ua-70799 4544 33 -3368 -3100 -3234 HV13b female Tooth 2 Shotgun minus ds diploid PRJEB51705 2023_Koptekin_SouthwestAsia -sha003 F Iran_ShahTepe_BA S2, BIII Iran Shahtepe 37.14918344 54.65098268 contextual n/a n/a n/a -3200 -3100 -3150 H14 female Tooth 2 Shotgun minus ds diploid PRJEB51705 2023_Koptekin_SouthwestAsia +G31 M Greece_Perachora_BA ΑΠ, #31_6 Greece Perachora 38.03 22.87 contextual n/a n/a n/a -2700 -2200 -2450 J1c2 BT Petrous 37 Shotgun mixed ds n/a PRJEB51705 Koptekin2023SouthwestAsia +G65 F Greece_Perachora_B ΚΟ 37 / Π1022 ΛΒ Β4, #65_1 Greece Perachora 38.03 22.87 contextual n/a n/a n/a -2700 -2200 -2450 T2c1d+152 female Petrous 2 Shotgun mixed ds n/a PRJEB51705 Koptekin2023SouthwestAsia +G66 F Greece_Perachora_BA P1008 PB4, #66 Greece Perachora 38.03 22.87 contextual n/a n/a n/a -2700 -2200 -2450 H female Petrous 2 Shotgun mixed ds n/a PRJEB51705 Koptekin2023SouthwestAsia +G62 M Greece_Perachora_BA KO 37 / Π920, #62_1; KO 37 / Π920, #62_3 Greece Perachora 38.03 22.87 contextual n/a n/a n/a -2700 -2200 -2450 J1c G2a2b2a Petrous 4 Shotgun mixed ds n/a PRJEB51705 Koptekin2023SouthwestAsia +G76a F Greece_Perachora_BA KO 37 / Π920, #62_2; Π934α, #76 Greece Perachora 38.03 22.87 C14 Beta-438877 3950 30 -2569 -2340 -2455 T2c1+146 female Petrous, Tooth 6 Shotgun minus ds diploid PRJEB51705 Koptekin2023SouthwestAsia +mus006 M Anatolia_Musular_N SK6 Turkey Musular 38.35 34.22 C14 TÜBİTAK-671 8104 35 -7180 -7039 -7110 N1a1a1 CT Petrous 3 Shotgun minus ds diploid PRJEB51705 Koptekin2023SouthwestAsia +geo029 M Georgia_Didnauri_BA N 14 / map number 46 Georgia Didnauri 41.46 46.11 C14 Ua-65812 2932 28 -1220 -1016 -1118 I5c R1b1a2a2 M3 sin mand + Pm1 dex mand 1 Shotgun minus ds diploid PRJEB51705 Koptekin2023SouthwestAsia +zrj003 M Azerbaijan_Shamakhi_IA Shamakhi III Azerbaijan Shamakhi 40.35 47.76 C14 Ua-65816 1797 28 -206 -347 276 K1a19 J Tooth 1 Shotgun minus ds diploid PRJEB51705 Koptekin2023SouthwestAsia +geo005 M Georgia_Didnauri_BA N1 / Shuagori Georgia Didnauri 41.46 46.11 C14 Ua-65808 2949 30 -1258 -1049 -1154 U7b R1b1a2a2 Bone fragment 3 Shotgun minus ds diploid PRJEB51705 Koptekin2023SouthwestAsia +Gordion002 F Anatolia_Gordion_IA YH41500 Turkey Gordion 39.65 31.97 contextual n/a n/a n/a -333 0 -166 K1a3 female Petrous 2 Shotgun minus ds diploid PRJEB51705 Koptekin2023SouthwestAsia +geo006 M Georgia_Didnauri_BA N 8A / map number:14 Georgia Didnauri 41.46 46.11 C14 Ua-65809 2797 30 -1041 -837 -939 X2 O1b1a2 M max 2 Shotgun minus ds diploid PRJEB51705 Koptekin2023SouthwestAsia +mus005 F Anatolia_Musular_N SK5 Turkey Musular 38.35 34.22 C14 TÜBİTAK-1151 8250 35 -7377 -7167 -7272 K1a4 female Petrous 5 Shotgun minus ds diploid PRJEB51705 Koptekin2023SouthwestAsia +ulu117 F Anatolia_Ulucak_BA M7a Turkey Ulucak 38.48 27.35 contextual n/a n/a n/a -4000 -3000 -3500 J1c11 female Petrous 3 Shotgun minus ds diploid PRJEB51705 Koptekin2023SouthwestAsia +G37 M Greece_Sarakenos_BA G37 Greece Sarakenos 38.45 23.22 C14 Beta-438876 3920 30 -2325 -2300 -2313 H11a2 J Tooth 3 Shotgun minus ds diploid PRJEB51705 Koptekin2023SouthwestAsia +gur019 F Georgia_Nazarlebi_BA N19 Georgia Nazarlebi 41.33 46.23 contextual n/a n/a n/a -1500 -1000 -1250 K1a4b female Tooth 2 Shotgun minus ds diploid PRJEB51705 Koptekin2023SouthwestAsia +G23 M Greece_Theopetra_BA G23 Greece Theopetra 39.68 21.68 C14 Beta-438875 3800 30 -2335 -2140 -2238 H5 I Tooth 4 Shotgun minus ds diploid PRJEB51705 Koptekin2023SouthwestAsia +sha006 F Iran_ShahTepe_BA S9, EII Iran Shahtepe 37.14918344 54.65098268 contextual n/a n/a n/a -3200 -3100 -3150 J1b1b1 female Tooth 2 Shotgun minus ds diploid PRJEB51705 Koptekin2023SouthwestAsia +gur017 M Georgia_Nazarlebi_BA N17 Georgia Nazarlebi 41.33 46.23 contextual n/a n/a n/a -1500 -1000 -1250 N1a1a1a I Petrous 2 Shotgun minus ds diploid PRJEB51705 Koptekin2023SouthwestAsia +geo017 F Georgia_Doghlauri_BA N 93 Georgia Doghlauri 41.68 44.77 C14 Ua-65811 2987 28 -1373 -1118 -1246 H4b female Bone fragment 1 Shotgun minus ds diploid PRJEB51705 Koptekin2023SouthwestAsia +sha012 M Iran_ShahTepe_BA S21, FIII Iran Shahtepe 37.14918344 54.65098268 contextual n/a n/a n/a -3200 -3100 -3150 U1a3 J Tooth 2 Shotgun minus ds diploid PRJEB51705 Koptekin2023SouthwestAsia +gur016 M Georgia_Nazarlebi_B N16 Georgia Nazarlebi 41.33 46.23 contextual n/a n/a n/a -1500 -1000 -1250 K A Petrous 2 Shotgun minus ds diploid PRJEB51705 Koptekin2023SouthwestAsia +geo015 M Georgia_Doghlauri_KuraAraxes_BA N 39 Georgia Doghlauri 41.68 44.77 C14 Ua-65810 4321 32 -3016 -2886 -2951 K1a J2a1b1 Bone fragment 1 Shotgun minus ds diploid PRJEB51705 Koptekin2023SouthwestAsia +CTG025 F Anatolia_CineTepecik_BA g25 Turkey Çine-Tepecik 37.6 28.01 C14 TÜBİTAK-744 3551 31 -1977 -1772 -1875 W6b female Petrous 3 Shotgun minus ds diploid PRJEB51705 Koptekin2023SouthwestAsia +Gordion001 M Anatolia_Gordion_IA YH36611 Turkey Gordion 39.65 31.97 contextual n/a n/a n/a -333 0 -166 H14a J2a1 Petrous 1 Shotgun minus ds diploid PRJEB51705 Koptekin2023SouthwestAsia +sha004 M Iran_ShahTepe_BA S4, BIII Iran Shahtepe 37.14918344 54.65098268 C14 Ua-70798 4560 33 -3487 -3101 -3294 I1a J Tooth 2 Shotgun minus ds diploid PRJEB51705 Koptekin2023SouthwestAsia +BOG028 F Anatolia_Bogazkoy_Ottoman 020-074 Turkey Boğazköy 40.02 34.61 contextual n/a n/a n/a -1000 -1900 1450 HV1b3b female Petrous 2 Shotgun minus ds diploid PRJEB51705 Koptekin2023SouthwestAsia +BOG020 M Anatolia_Bogazkoy_Roman 605-620 Turkey Boğazköy 40.02 34.61 contextual n/a n/a n/a -130 -190 160 X2f J2a1h Petrous 2 Shotgun minus ds diploid PRJEB51705 Koptekin2023SouthwestAsia +sha009 F Iran_ShahTepe_BA S3, FIII Iran Shahtepe 37.14918344 54.65098268 C14 Ua-70800 4484 33 -3345 -3029 -3187 U5a2+16294 female Petrous 1 Shotgun minus ds diploid PRJEB51705 Koptekin2023SouthwestAsia +BOG019 M Anatolia_Bogazkoy_Roman 373-718 Turkey Boğazköy 40.02 34.61 contextual n/a n/a n/a -100 -350 225 X2n T1a1 Petrous 1 Shotgun minus ds diploid PRJEB51705 Koptekin2023SouthwestAsia +sha008 F Iran_ShahTepe_BA S5, FII Iran Shahtepe 37.14918344 54.65098268 contextual n/a n/a n/a -3200 -3100 -3150 K1a12a female Petrous 2 Shotgun minus ds diploid PRJEB51705 Koptekin2023SouthwestAsia +BOG024 M Anatolia_Bogazkoy_Roman 107-329 Turkey Boğazköy 40.02 34.61 contextual n/a n/a n/a -130 -190 160 H13c1a J Petrous 2 Shotgun minus ds diploid PRJEB51705 Koptekin2023SouthwestAsia +sha014 M Iran_ShahTepe_BA S3, GIII Iran Shahtepe 37.14918344 54.65098268 contextual n/a n/a n/a -3200 -3100 -3150 HV13b T1a Tooth 2 Shotgun minus ds diploid PRJEB51705 Koptekin2023SouthwestAsia +sha010 F Iran_ShahTepe_BA S4, FIII Iran Shahtepe 37.14918344 54.65098268 contextual n/a n/a n/a -3200 -3100 -3150 HV2 female Petrous 2 Shotgun minus ds diploid PRJEB51705 Koptekin2023SouthwestAsia +sha007 F Iran_ShahTepe_BA S3, EIII Iran Shahtepe 37.14918344 54.65098268 C14 Ua-70799 4544 33 -3368 -3100 -3234 HV13b female Tooth 2 Shotgun minus ds diploid PRJEB51705 Koptekin2023SouthwestAsia +sha003 F Iran_ShahTepe_BA S2, BIII Iran Shahtepe 37.14918344 54.65098268 contextual n/a n/a n/a -3200 -3100 -3150 H14 female Tooth 2 Shotgun minus ds diploid PRJEB51705 Koptekin2023SouthwestAsia diff --git a/2023_Koptekin_SouthwestAsia/POSEIDON.yml b/2023_Koptekin_SouthwestAsia/POSEIDON.yml index 2ddca14a..b6cf76b0 100644 --- a/2023_Koptekin_SouthwestAsia/POSEIDON.yml +++ b/2023_Koptekin_SouthwestAsia/POSEIDON.yml @@ -17,6 +17,6 @@ genotypeData: indFileChkSum: 8b4f2c66944d0c0e9796370578622eb0 snpSet: Other jannoFile: 2023_Koptekin_SouthwestAsia.janno -jannoFileChkSum: 7825af241f39d3969feef4d4fb46ca64 +jannoFileChkSum: d6884e6b97d7dc02c34ae7ac3da4ddb8 bibFile: 2023_Koptekin_SouthwestAsia.bib -bibFileChkSum: 6ba6cb04a5a5d4144b470b5df203e859 +bibFileChkSum: de913980fac6df5e57c61ebcefd37af6