diff --git a/2023_Skourtanioti_Aegean/2023_Skourtanioti_Aegean.bed b/2023_Skourtanioti_Aegean/2023_Skourtanioti_Aegean.bed new file mode 100644 index 00000000..a43a17bf --- /dev/null +++ b/2023_Skourtanioti_Aegean/2023_Skourtanioti_Aegean.bed @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:6f1168165f9638a745344883cc29732176cb7063db5f5e831474293d671013e7 +size 32058341 diff --git a/2023_Skourtanioti_Aegean/2023_Skourtanioti_Aegean.bib b/2023_Skourtanioti_Aegean/2023_Skourtanioti_Aegean.bib new file mode 100644 index 00000000..628e14e0 --- /dev/null +++ b/2023_Skourtanioti_Aegean/2023_Skourtanioti_Aegean.bib @@ -0,0 +1,11 @@ +@article{SkourtaniotiNatEcoEvo2023, + title = {Ancient DNA reveals admixture history and endogamy in the prehistoric Aegean}, + author = {Skourtanioti, E., Ringbauer, H., Gnecchi Ruscone, G. A., Bianco, R. A., Burri, M., Freund, C., Furtwängler, A., Gomes Martins, N. F., Knolle, F., Neumann, G. U., et al.}, + year = {2023}, + journal = {Nature Ecology & Evolution}, + volume = {7}, + issue = {2}, + doi = {10.1038/s41559-022-01952-3}, + url = {https://doi.org/10.1038/s41559-022-01952-3}, +} + diff --git a/2023_Skourtanioti_Aegean/2023_Skourtanioti_Aegean.bim b/2023_Skourtanioti_Aegean/2023_Skourtanioti_Aegean.bim new file mode 100644 index 00000000..384f3bce --- /dev/null +++ b/2023_Skourtanioti_Aegean/2023_Skourtanioti_Aegean.bim @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:f3d3c4aaa95fc68acd08d9695f14fc8e777d6078d59a2ca64bdaeb770d135d4e +size 43313767 diff --git a/2023_Skourtanioti_Aegean/2023_Skourtanioti_Aegean.fam b/2023_Skourtanioti_Aegean/2023_Skourtanioti_Aegean.fam new file mode 100644 index 00000000..e72048c8 --- /dev/null +++ b/2023_Skourtanioti_Aegean/2023_Skourtanioti_Aegean.fam @@ -0,0 +1,103 @@ +Aidonia_LBA AID001 0 0 2 0 +Aidonia_LBA.rel.of.AID001 AID002 0 0 1 0 +Aidonia_LBA AID007 0 0 1 0 +Aidonia_LBA.rel.of.AID007 AID008 0 0 1 0 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Greece Corinthia-Peloponnese Aidonia 37.84083 22.5832 contextual -1400 -1350 -1300 U5a1d2b bone_petrous 2 1240K minus ss haploid 780681 0.633 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +AID002 M Aidonia_LBA.rel.of.AID001 AID001 first 15/100028 skull A Greece Corinthia-Peloponnese Aidonia 37.84083 22.5832 contextual -1450 -1425 -1400 C1a2 bone_petrous 2 1240K minus ss haploid 748191 0.607 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +AID007 M Aidonia_LBA Greece_S.Mainland_LBA AID008 first brother_of [3] 16/101132 Greece Corinthia-Peloponnese Aidonia 37.84083 22.5832 contextual -1400 -1300 -1200 N1b1a2 J2a bone_petrous 2 1240K minus ss haploid 797083 0.646 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +AID008 M Aidonia_LBA.rel.of.AID007 AID007 first brother_of [4] 16/101132 Greece Corinthia-Peloponnese Aidonia 37.84083 22.5832 contextual -1400 -1300 -1200 N1b1a2 J2a2~ bone_petrous 1 1240K minus ss haploid 823139 0.668 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +AID009 M Aidonia_LBA Greece_S.Mainland_LBA [6] 16/101133 Greece Corinthia-Peloponnese Aidonia 37.84083 22.5832 contextual -1400 -1300 -1200 R1b1a1b bone_petrous 1 1240K minus ss haploid 98403 0.08 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +AID010 F Aidonia_LBA Greece_S.Mainland_LBA 16/101123 skull K Greece Corinthia-Peloponnese Aidonia 37.84083 22.5832 contextual -1300 -1250 -1200 bone_petrous 1 1240K minus ss haploid 48200 0.039 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +AID012 F Aidonia_LBA.rel.of.AID014andAID017_lc AID017;AID014 first;thirdToFifth [3] 16/103058 Greece Corinthia-Peloponnese Aidonia 37.84083 22.5832 contextual -1450 -1425 -1400 tooth 1 1240K minus ss haploid 21828 0.018 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +AID014 F Aidonia_LBA.rel.of.AID012andAID017 AID012;AID017 thirdToFifth;second AID014-AID017 can be third 16/103056 skull A Greece Corinthia-Peloponnese Aidonia 37.84083 22.5832 contextual -1300 -1250 -1200 bone_petrous 1 1240K minus ss haploid 108224 0.088 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +AID017 F Aidonia_LBA Greece_S.Mainland_LBA AID012;AID014 first;second AID014-AID017 can be third 16/103058 skull Greece Corinthia-Peloponnese Aidonia 37.84083 22.5832 contextual -1550 -1475 -1400 bone_petrous 2 1240K minus ss haploid 185318 0.15 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +APO004 F Aposelemis_N Greece_Crete_N APO028 first Grave 55-Burial 67; Lab 2014-2) Greece Heraklion-Crete Aposelemis 35.2394569 24.9883048 contextual -6075 -5939 -5803 range from other C14 dates bone_petrous 11 1240K mixed mixed haploid 263245 0.213 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +APO022 F Aposelemis_LBA Greece_Crete_LBA Pit of bones at entrance of cave; Lab 2015-Dental Homo 1) Greece Heraklion-Crete Aposelemis 35.2394569 24.9883048 C14 MAMS-47520 3286 21 -1612 -1506 H5'36 tooth 2 1240K minus ss haploid 158771 0.129 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +APO023 M Aposelemis_LBA Greece_Crete_LBA Pit of bones at entrance of cave; Lab 2015-Dental Homo 2 Greece Heraklion-Crete Aposelemis 35.2394569 24.9883048 C14 MAMS-47521 3286 21 -1612 -1506 K2b1 J2a tooth 2 1240K minus ss haploid 229884 0.186 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +APO025 M Aposelemis_LBA Greece_Crete_LBA Pit of bones at entrance of cave; Lab 2015-Dental Homo 3 Greece Heraklion-Crete Aposelemis 35.2394569 24.9883048 C14 MAMS-47522 3315 24 -1627 -1509 T2b J2a tooth 2 1240K minus ss haploid 258762 0.21 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +APO028 F Aposelemis_N Greece_Crete_N APO004 first Grave 26-Burial 30; Lab 2018-1 Greece Heraklion-Crete Aposelemis 35.2394569 24.9883048 C14 MAMS-54083 7134 25 -6059 -5934 tooth 6 1240K mixed mixed haploid 50735 0.041 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +APO029 M Aposelemis_N Greece_Crete_N Grave 8-Burial 16; Lab 2018-10a Greece Heraklion-Crete Aposelemis 35.2394569 24.9883048 contextual -5984 -5985 -5986 G/G2 bone_petrous 9 1240K mixed mixed haploid 171796 0.139 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +APO037 M Aposelemis_N Greece_Crete_N Burial 60; Lab 2013-23 Greece Heraklion-Crete Aposelemis 35.2394569 24.9883048 C14 MAMS-49519 7168 32 -6075 -5986 G tooth 7 1240K minus ss haploid 117147 0.095 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +APO038 F Aposelemis_N_lc_contam Greece Heraklion-Crete Aposelemis 35.2394569 24.9883048 contextual -5984 -5985 -5986 tooth 4 1240K minus ss haploid 18190 0.015 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +APO043 F Aposelemis_N Greece_Crete_N Grave 54-Burial 66; Lab 2014-4) Greece Heraklion-Crete Aposelemis 35.2394569 24.9883048 C14 MAMS-49520 7012 32 -5984 -5803 bone_petrous 7 1240K minus ss haploid 132599 0.108 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +APO044 M Aposelemis_N Greece_Crete_N Grave 49-Burial 62; Lab 2014-26 Greece Heraklion-Crete Aposelemis 35.2394569 24.9883048 C14 MAMS-49521 7125 33 -6065 -5919 G/G2 bone_petrous 7 1240K minus ss haploid 113810 0.092 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +GLI002 M GlykaNera_LBA Greece_S.Mainland_LBA K2 Greece Attica GlykaNera 37.99017 23.849907 C14 MAMS-49522 3103 22 -1429 -1293 R1b1a1b bone_petrous 1 1240K half ds haploid 60375 0.049 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +GLI003 M GlykaNera_LBA Greece_S.Mainland_LBA Individual 3 Greece Attica GlykaNera 37.99017 23.849907 C14 MAMS-49523 3110 27 -1439 -1293 U3c J2a1a bone_petrous 1 1240K half ds haploid 968887 0.786 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +HGC001 M HgCharalambos_EMBA Greece_Crete_EMBA deposit of mixed human bones at cave Room 5 Greece Lasithi-Crete Hagios Charalambos 35.1772505 25.4410963 C14 MAMS-37426 3732 19 -2200 -2041 H J1a2a1a2~ tooth 1 1240K half ds haploid 1040566 0.844 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +HGC002 M HgCharalambos_EMBA.rel.of.HGC026andI0074 HGC043;HGC056;HGC059 HGC026;I0074;HGC040 second;second;second HGC002-HGC040 could be third deposit of mixed human bones at cave Room 5 Greece Lasithi-Crete Hagios Charalambos 35.1772505 25.4410963 C14 MAMS-37427 3777 19 -2283 -2139 T2+16189 J1 tooth 4 1240K half ds haploid 366657 0.297 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +HGC003 F HgCharalambos_EMBA Greece_Crete_EMBA deposit of mixed human bones at cave Room 5 Greece Lasithi-Crete Hagios Charalambos 35.1772505 25.4410963 C14 MAMS-37428 3648 19 -2125 -1948 tooth 1 1240K half ds haploid 511956 0.415 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +HGC005 M HgCharalambos_EMBA Greece_Crete_EMBA HGC054 deposit of mixed human bones at cave Room 5 Greece Lasithi-Crete Hagios Charalambos 35.1772505 25.4410963 C14 MAMS-37430 3757 19 -2276 -2059 H4a1 J1 tooth 2 1240K mixed mixed haploid 516744 0.419 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +HGC006 M HgCharalambos_EMBA Greece_Crete_EMBA HGC035 I0070 second deposit of mixed human bones at cave Room 5 Greece Lasithi-Crete Hagios Charalambos 35.1772505 25.4410963 C14 MAMS-37431 3764 19 -2279 -2063 H13a1a J2a1a1a2 tooth 2 1240K half ds haploid 1058362 0.858 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +HGC008 F HgCharalambos_EMBA Greece_Crete_EMBA deposit of mixed human bones at cave Room 5 Greece Lasithi-Crete Hagios Charalambos 35.1772505 25.4410963 C14 MAMS-37433 3795 19 -2290 -2146 T2b25 tooth 1 1240K half ds haploid 747989 0.607 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +HGC009 M HgCharalambos_EMBA Greece_Crete_EMBA deposit of mixed human bones at cave Room 5 Greece Lasithi-Crete Hagios Charalambos 35.1772505 25.4410963 C14 MAMS-45081 3621 22 -2035 -1909 H J2a1a1a2 tooth 2 1240K half ds haploid 779131 0.632 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +HGC010 M HgCharalambos_EMBA Greece_Crete_EMBA deposit of mixed human bones at cave Room 5 Greece Lasithi-Crete Hagios Charalambos 35.1772505 25.4410963 contextual -2300 -2100 -1900 U1a1a+16129 tooth 2 1240K mixed mixed haploid 514088 0.417 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +HGC011 F HgCharalambos_EMBA Greece_Crete_EMBA deposit of mixed human bones at cave Room 5 Greece Lasithi-Crete Hagios Charalambos 35.1772505 25.4410963 contextual -2300 -2100 -1900 HV+16311 tooth 1 1240K half ds haploid 893737 0.725 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +HGC013 M HgCharalambos_EMBA.rel.of.HGC024 HGC063 second deposit of mixed human bones at cave Room 5 Greece Lasithi-Crete Hagios Charalambos 35.1772505 25.4410963 contextual -2300 -2100 -1900 HV1a'b'c J1a2a1a2~ tooth 1 1240K half ds haploid 616479 0.5 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +HGC015 M HgCharalambos_EMBA Greece_Crete_EMBA HGC045 second deposit of mixed human bones at cave Room 5 Greece Lasithi-Crete Hagios Charalambos 35.1772505 25.4410963 contextual -2300 -2100 -1900 X2 J tooth 1 1240K half ds haploid 315606 0.256 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +HGC017 M HgCharalambos_EMBA Greece_Crete_EMBA HGC023;HGC029 I0071 second deposit of mixed human bones at cave Room 5 Greece Lasithi-Crete Hagios Charalambos 35.1772505 25.4410963 contextual -2300 -2100 -1900 J2a1a1a2 tooth 3 1240K half ds haploid 910790 0.739 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +HGC018 M HgCharalambos_EMBA Greece_Crete_EMBA HGC061 deposit of mixed human bones at cave Room 5 Greece Lasithi-Crete Hagios Charalambos 35.1772505 25.4410963 contextual -2300 -2100 -1900 HV+16311 J2a1a1a2 tooth 2 1240K mixed mixed haploid 716850 0.581 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +HGC020 F HgCharalambos_EMBA Greece_Crete_EMBA HGC049;HGC067 HGC063 second or third deposit of mixed human bones at cave Room 5 Greece Lasithi-Crete Hagios Charalambos 35.1772505 25.4410963 contextual -2300 -2100 -1900 T2c1d tooth 3 1240K mixed mixed haploid 604284 0.49 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +HGC024 M HgCharalambos_EMBA Greece_Crete_EMBA HGC063 second deposit of mixed human bones at cave Room 5 Greece Lasithi-Crete Hagios Charalambos 35.1772505 25.4410963 contextual -2300 -2100 -1900 I5a J2a1a tooth 1 1240K half ds haploid 634929 0.515 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +HGC025 M HgCharalambos_EMBA Greece_Crete_EMBA deposit of mixed human bones at cave Room 5 Greece Lasithi-Crete Hagios Charalambos 35.1772505 25.4410963 contextual -2300 -2100 -1900 H+195 G2a tooth 1 1240K half ds haploid 569775 0.462 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +HGC040 F HgCharalambos_EMBA Greece_Crete_EMBA HGC026 deposit of mixed human bones at cave Room 5 Greece Lasithi-Crete Hagios Charalambos 35.1772505 25.4410963 C14 MAMS-49762 3751 25 -2280 -2039 tooth 2 1240K mixed mixed haploid 139433 0.113 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +HGC027 M HgCharalambos_EMBA Greece_Crete_EMBA deposit of mixed human bones at cave Room 5 Greece Lasithi-Crete Hagios Charalambos 35.1772505 25.4410963 contextual -2300 -2100 -1900 K1a4 J2a1a1a2 tooth 1 1240K half ds haploid 393507 0.319 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +HGC031 M HgCharalambos_EMBA Greece_Crete_EMBA deposit of mixed human bones at cave Room 5 Greece Lasithi-Crete Hagios Charalambos 35.1772505 25.4410963 contextual -2300 -2100 -1900 J2a1a1a2 tooth 2 1240K mixed mixed haploid 392302 0.318 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +HGC032 M HgCharalambos_EMBA Greece_Crete_EMBA deposit of mixed human bones at cave Room 5 Greece Lasithi-Crete Hagios Charalambos 35.1772505 25.4410963 contextual -2300 -2100 -1900 H J2a1a1a2 tooth 1 1240K half ds haploid 480812 0.39 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +HGC033 F HgCharalambos_EMBA.rel.of.HGC033 deposit of mixed human bones at cave Room 5 Greece Lasithi-Crete Hagios Charalambos 35.1772505 25.4410963 contextual -2300 -2100 -1900 H5 tooth 1 1240K half ds haploid 286698 0.233 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +HGC036 M HgCharalambos_EMBA_contam deposit of mixed human bones at cave Room 5 Greece Lasithi-Crete Hagios Charalambos 35.1772505 25.4410963 contextual -2300 -2100 -1900 HV+16311 J2a1a tooth 1 1240K half ds haploid 752642 0.61 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +HGC037 M HgCharalambos_EMBA Greece_Crete_EMBA deposit of mixed human bones at cave Room 5 Greece Lasithi-Crete Hagios Charalambos 35.1772505 25.4410963 contextual -2300 -2100 -1900 H J2a tooth 1 1240K minus ss haploid 214451 0.174 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +HGC041 M HgCharalambos_EMBA Greece_Crete_EMBA HGC052 deposit of mixed human bones at cave Room 5 Greece Lasithi-Crete Hagios Charalambos 35.1772505 25.4410963 contextual -2300 -2100 -1900 J2 tooth 2 1240K minus ss haploid 100064 0.081 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +HGC045 F HgCharalambos_EMBA.rel.of.HGC015 HGC051 HGC015 second deposit of mixed human bones at cave Room 5 Greece Lasithi-Crete Hagios Charalambos 35.1772505 25.4410963 contextual -2300 -2100 -1900 tooth 2 1240K minus ss haploid 48093 0.039 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +HGC053 M HgCharalambos_EMBA HGC057 deposit of mixed human bones at cave Room 5 Greece Lasithi-Crete Hagios Charalambos 35.1772505 25.4410963 contextual -2300 -2100 -1900 U7b J/J2a tooth 2 1240K minus ss haploid 89166 0.072 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +HGC055 M HgCharalambos_EMBA HGC065 deposit of mixed human bones at cave Room 5 Greece Lasithi-Crete Hagios Charalambos 35.1772505 25.4410963 contextual -2300 -2100 -1900 HV+16311 IJK tooth 2 1240K minus ss haploid 391908 0.318 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +HGC063 M HgCharalambos_EMBA.rel.of.HGC024 HGC024;HGC013 second;second deposit of mixed human bones at cave Room 5 Greece Lasithi-Crete Hagios Charalambos 35.1772505 25.4410963 contextual -2300 -2100 -1900 I5a J1a2a1a2~ tooth 1 1240K minus ss haploid 162878 0.132 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +KRO008 F Krousonas_LBA Greece_Crete_LBA Square A1: Stratigraphic Layer 1; Lab 2016-4 Greece Heraklion-Crete Krousonas 35.2394569 24.9883048 C14 MAMS-49524 2975 24 -1365 -1114 tooth 3 1240K minus ss haploid 151692 0.123 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +KRO009 F Krousonas_LBA Greece_Crete_LBA Square A1: Stratigraphic Layer 1; Lab 2016-6-a) Greece Heraklion-Crete Krousonas 35.2394569 24.9883048 C14 MAMS-49525 2970 22 -1268 -1060 tooth 3 1240K minus ss haploid 452367 0.367 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +KUK001 F Koukounaries_LBA Greece_Islands_LBA KOU-1 Greece Cyclades-South Aegean Islands Koukounaries 37.126595 25.208784 contextual -1175 -1163 -1150 H5a2 bone_petrous 1 1240K minus ss haploid 630070 0.511 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +KUK002 M Koukounaries_LBA Greece_Islands_LBA KOU-3 Greece Cyclades-South Aegean Islands Koukounaries 37.126595 25.208784 contextual -1175 -1163 -1150 U1a1a J1/J1b bone_petrous 1 1240K minus ss haploid 367017 0.298 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +KUK005 F Koukounaries_LBA Greece_Islands_LBA KOU-B Greece Cyclades-South Aegean Islands Koukounaries 37.126595 25.208784 contextual -1175 -1163 -1150 J2b1b1 bone_petrous 1 1240K minus ss haploid 1008222 0.818 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +KUK006 F Koukounaries_LBA Greece_Islands_LBA KOU-D Greece Cyclades-South Aegean Islands Koukounaries 37.126595 25.208784 contextual -1175 -1163 -1150 bone_petrous 1 1240K minus ss haploid 929453 0.754 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +LAZ017 M Lazarides_EBA Greece_Islands_LBA LZR-23 Greece Aegina-Attica Lazarides 37.721203 23.50542 C14 MAMS-47523 4171 25 -2881 -2635 T2b8 C1a2b bone_petrous 1 1240K half ds haploid 425925 0.345 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +LAZ018 M Lazarides_LBA Greece_Islands_LBA LZR-24 Greece Aegina-Attica Lazarides 37.721203 23.50542 C14 MAMS-47524 3097 21 -1424 -1293 G2a bone_petrous 2 1240K half ds haploid 519215 0.421 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +LAZ019 F Lazarides_LBA Greece_Islands_LBA LZR-25 Greece Aegina-Attica Lazarides 37.721203 23.50542 C14 MAMS-47525 3045 27 -1398 -1221 bone_petrous 3 1240K half ds haploid 225460 0.183 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +LAZ020 F Lazarides_LBA Greece_Islands_LBA LZR-26 Greece Aegina-Attica Lazarides 37.721203 23.50542 C14 MAMS-47526 3055 21 -1403 -1233 K2a2a bone_petrous 4 1240K half ds haploid 1004223 0.814 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +LAZ021 F Lazarides_LBA Greece_Islands_LBA LZR-27 Greece Aegina-Attica Lazarides 37.721203 23.50542 C14 MAMS-49526 3311 26 -1626 -1508 bone_petrous 5 1240K half ds haploid 174008 0.141 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +MYG001 M Mygdalia_LBA.rel MYG002;MYG003;MYG005;MYG006;MYG008 second;thirdToFifth;thirdToFifth;second;first one pedigree; all thirdToFifth are third Intramuros Child Grave3.A Greece Achaea-Western Greece/ Peloponnese Mygdalia 38.186889 21.776528 C14 MAMS-47527 3265 21 -1611 -1457 J2b2a1 bone_petrous 6 1240K half ds haploid 610418 0.495 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +MYG002 F Mygdalia_LBA.rel MYG001;MYG003;MYG005;MYG006;MYG008 second;second;second;second;second one pedigree; all thirdToFifth are third Intramuros Child Grave3.B Greece Achaea-Western Greece/ Peloponnese Mygdalia 38.186889 21.776528 C14 MAMS-47528 3318 21 -1626 -1518 bone_petrous 3 1240K mixed mixed haploid 435471 0.353 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +MYG003 F Mygdalia_LBA Greece_S.Mainland_LBA MYG001;MYG002;MYG005;MYG006;MYG008 thirdToFifth;second;thirdToFifth;thirdToFifth;thirdToFifth one pedigree; all thirdToFifth are third Intramuros Child Grave3.C Greece Achaea-Western Greece/ Peloponnese Mygdalia 38.186889 21.776528 C14 MAMS-47529 3239 20 -1596 -1438 bone_petrous 1 1240K half ds haploid 939766 0.762 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +MYG004 M Mygdalia_LBA Greece_S.Mainland_LBA MYG005 thirdToFifth likely third degree Intramuros Child Grave3.D Greece Achaea-Western Greece/ Peloponnese Mygdalia 38.186889 21.776528 C14 MAMS-47530 3252 27 -1609 -1446 U8b1a2b G2a2a1 bone_petrous 1 1240K half ds haploid 967986 0.785 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +MYG005 M Mygdalia_LBA.rel MYG001;MYG002;MYG003;MYG004;MYG006;MYG008 thirdToFifth;second;thirdToFifth;thirdToFifth;thirdToFifth;thirdToFifth one pedigree; all thirdToFifth are third Intramuros Child Grave3.E Greece Achaea-Western Greece/ Peloponnese Mygdalia 38.186889 21.776528 C14 MAMS-47531 3198 23 -1504 -1425 U8b1a2b J2b2a1 bone_petrous 1 1240K half ds haploid 731983 0.594 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +MYG006 M Mygdalia_LBA.rel MYG001;MYG002;MYG003;MYG005;MYG008 second;second;thirdToFifth;thirdToFifth;second one pedigree; all thirdToFifth are third Intramuros Child Grave3.F Greece Achaea-Western Greece/ Peloponnese Mygdalia 38.186889 21.776528 C14 MAMS-47532 3262 29 -1612 -1452 T1a4 J2b2a1 bone_petrous 1 1240K half ds haploid 925514 0.751 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +MYG008 M Mygdalia_LBA.rel MYG001;MYG002;MYG003;MYG005;MYG006 first;second;thirdToFifth;thirdToFifth;second one pedigree; all thirdToFifth are third Intramuros Child Grave3.H Greece Achaea-Western Greece/ Peloponnese Mygdalia 38.186889 21.776528 C14 MAMS-47533 3260 24 -1611 -1452 K1a J2b2a1 bone_petrous 1 1240K half ds haploid 870419 0.706 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +NST001 M NeaStyra_EBA Greece_S.Mainland-Islands_EBA "NST-1; Cranium 5, Layer 3, Tomb 1" Greece Euboea-Central Greece NeaStyra 38.17975 24.207417 C14 MAMS-41246 3956 27 -2568 -2348 U3a1 J1a2a1a~ bone_petrous 3 1240K mixed mixed haploid 652429 0.529 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +NST004 M NeaStyra_EBA Greece_S.Mainland-Islands_EBA "NST-5; Cranium 18, Layer 4, Tomb 1" Greece Euboea-Central Greece NeaStyra 38.17975 24.207417 C14 MAMS-41247 3974 28 -2574 -2371 I2a2 bone_petrous 2 1240K mixed mixed haploid 146711 0.119 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +NST005 M NeaStyra_EBA Greece_S.Mainland-Islands_EBA "NST-7; Cranium 25, Layer 4, Tomb 1" Greece Euboea-Central Greece NeaStyra 38.17975 24.207417 C14 MAMS-41248 3886 28 -2465 -2292 G2a2b2b1a1a bone_petrous 3 1240K mixed mixed haploid 341672 0.277 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +NST010 M NeaStyra_EBA Greece_S.Mainland-Islands_EBA "NST-12; Cranium 41, Layer 5, Tomb 1" Greece Euboea-Central Greece NeaStyra 38.17975 24.207417 C14 MAMS-41249 4075 28 -2851 -2495 L bone_petrous 3 1240K mixed mixed haploid 167954 0.136 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +NST012 M NeaStyra_EBA Greece_S.Mainland-Islands_EBA "NST-14; Skeletal Group 18, Layer 5, Tomb 1" Greece Euboea-Central Greece NeaStyra 38.17975 24.207417 C14 MAMS-41250 3933 27 -2557 -2309 J1 bone_petrous 3 1240K mixed mixed haploid 195066 0.158 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +TIR001 M Tiryns_LBA Greece_S.Mainland_LBA "Burial 5/03; LXIII35/03, VIF/VIG; Maran 010" Greece Argolis-Peloponnese Tiryns 37.5995263 22.7995951 C14 MAMS-47534 3053 24 -1403 -1229 J2a tooth 1 1240K half ds haploid 123359 0.1 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +TIR002 F Tiryns_LBA Greece_S.Mainland_LBA Grave 7/1; LXII37/8 Nr.3; Nr. 1015; Kilian 024 Greece Argolis-Peloponnese Tiryns 37.5995263 22.7995951 C14 MAMS-47535 3044 24 -1394 -1222 V tooth 1 1240K half ds haploid 752174 0.61 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +TIR008 M Tiryns_IA Greece_S.Mainland_IA "Burial 1/14, Individual 1; LII25/58 II/II A & Ofl. II in. Nr. 134/14 and LII 25/58 I A; Maran 067" Greece Argolis-Peloponnese Tiryns 37.5995263 22.7995951 C14 MAMS-42113 2764 26 -991 -835 R1b1a1b bone_petrous 1 1240K half ds haploid 385098 0.312 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +TIR010 M Tiryns_LBA Greece_S.Mainland_LBA "Grave 18; LXII44/29.30, XVIIa Nr.1048; Kilian 032" Greece Argolis-Peloponnese Tiryns 37.5995263 22.7995951 C14 MAMS-42114 3116 26 -1440 -1299 J2a1a1a2 bone_petrous 1 1240K half ds haploid 493654 0.4 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +XAN003 M Chania_LBA Greece_Crete_LBA XAN007.A "Palama St., Tomb 10, Individual 10A" Greece Chania-Crete Chania 35.5172563 24.0149291 contextual -1350 -1300 -1250 W1h1 tooth 2 1240K half ds haploid 268875 0.218 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +XAN007 M Chania_LBA Greece_Crete_LBA XAN007.B "Palama St., Tomb 15, Individual 15C" Greece Chania-Crete Chania 35.5172563 24.0149291 contextual -1350 -1300 -1250 tooth 1 1240K half ds haploid 51793 0.042 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +XAN013 F Chania_LBA Greece_Crete_LBA "Kanevaro st., Trench A, Pit B2, Burial 3" Greece Chania-Crete Chania 35.5172563 24.0149291 contextual -1300 -1275 -1250 H7c bone_petrous 1 1240K minus ss haploid 400839 0.325 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +XAN014 M Chania_LBA Greece_Crete_LBA "Kanevaro st., Trench A, Pit B2, Burial 2" Greece Chania-Crete Chania 35.5172563 24.0149291 contextual -1300 -1275 -1250 H4a1 E1b1b1a1b bone_petrous 1 1240K minus ss haploid 355754 0.289 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +XAN015 F Chania_LBA Greece_Crete_LBA "Kanevaro st., Trench A, Pit B2, Burial" Greece Chania-Crete Chania 35.5172563 24.0149291 contextual -1300 -1275 -1250 bone_petrous 1 1240K minus ss haploid 280278 0.227 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +XAN016 M Chania_LBA.rel.of.XAN017 "Lendaris plot, Tomb 3, Individual 1" Greece Chania-Crete Chania 35.5172563 24.0149291 contextual -1300 -1250 -1200 H1 G2a2b2a bone_petrous 1 1240K minus ss haploid 194508 0.158 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +XAN017 F Chania_LBA Greece_Crete_LBA "Lendaris plot, Tomb 3, Skull 2" Greece Chania-Crete Chania 35.5172563 24.0149291 contextual -1300 -1250 -1200 H1e bone_petrous 1 1240K minus ss haploid 402613 0.327 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +XAN018 F Chania_LBA Greece_Crete_LBA "Lendaris plot, Tomb 3, Skull 3C" Greece Chania-Crete Chania 35.5172563 24.0149291 contextual -1300 -1250 -1200 bone_petrous 7 1240K minus ss haploid 174895 0.142 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +XAN021 F Chania_LBA Greece_Crete_LBA "Malefakis plot, Tomb 1, Individual 1" Greece Chania-Crete Chania 35.5172563 24.0149291 contextual -1350 -1225 -1100 H1az bone_petrous 1 1240K minus ss haploid 515906 0.418 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +XAN022 F Chania_LBA Greece_Crete_LBA "Malefakis plot, Tomb 1, Individual 2" Greece Chania-Crete Chania 35.5172563 24.0149291 contextual -1350 -1225 -1100 W6 bone_petrous 1 1240K minus ss haploid 277136 0.225 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +XAN023 F Chania_LBA Greece_Crete_LBA "Malefakis plot, Tomb 1, Individual 3" Greece Chania-Crete Chania 35.5172563 24.0149291 contextual -1350 -1225 -1100 HV4a1+16291 bone_petrous 1 1240K minus ss haploid 478600 0.388 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +XAN024 M Chania_LBA Greece_Crete_LBA "Malefakis plot, Tomb 1, Individual 4" Greece Chania-Crete Chania 35.5172563 24.0149291 contextual -1350 -1225 -1100 X2 J2a bone_petrous 1 1240K minus ss haploid 486988 0.395 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +XAN025 F Chania_LBA Greece_Crete_LBA "Lendaris plot, Tomb 3, Individual 2" Greece Chania-Crete Chania 35.5172563 24.0149291 contextual -1350 -1225 -1100 H1m bone_petrous 1 1240K minus ss haploid 636489 0.516 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +XAN026 F Chania_LBA Greece_Crete_LBA "Lendaris plot, Tomb 3, Individual 3" Greece Chania-Crete Chania 35.5172563 24.0149291 contextual -1350 -1225 -1100 bone_petrous 8 1240K minus ss haploid 207459 0.168 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +XAN027 M Chania_LBA Greece_Crete_LBA "Malefakis plot, Tomb 3, Individual 1" Greece Chania-Crete Chania 35.5172563 24.0149291 contextual -1350 -1225 -1100 J2b1 G2a bone_petrous 1 1240K minus ss haploid 285111 0.231 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +XAN028 F Chania_LBA Greece_Crete_LBA "Tsapakis plot, Tomb 5, Individual" Greece Chania-Crete Chania 35.5172563 24.0149291 contextual -1300 -1275 -1250 HV1a'b'c tooth 9 1240K minus ss haploid 242569 0.197 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +XAN029 M Chania_LBA Greece_Crete_LBA "Robithakis plot, Tomb 1" Greece Chania-Crete Chania 35.5172563 24.0149291 contextual -1300 -1275 -1250 J2a/J2a1a~ bone_petrous 1 1240K minus ss haploid 541046 0.439 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +XAN030 M Chania_LBA Greece_Crete_LBA "Robithakis plot, Tomb 4, Skull 3" Greece Chania-Crete Chania 35.5172563 24.0149291 contextual -1300 -1275 -1250 J2b1 R1b1a1b bone_petrous 1 1240K minus ss haploid 481327 0.39 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +XAN031 M Chania_LBA Greece_Crete_LBA "Robithakis plot, Tomb 4, Skull 4" Greece Chania-Crete Chania 35.5172563 24.0149291 contextual -1300 -1275 -1250 J2a1a1a2 bone_petrous 1 1240K minus ss haploid 408188 0.331 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +XAN034 F Chania_LBA Greece_Crete_LBA "Robithakis plot, Tomb 4, skull 8" Greece Chania-Crete Chania 35.5172563 24.0149291 contextual -1300 -1275 -1250 bone_petrous 1 1240K minus ss haploid 574920 0.466 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +XAN035 M Chania_LBA Greece_Crete_LBA "Haghia Aikaterini square, infant burial in pit" Greece Chania-Crete Chania 35.5172563 24.0149291 contextual -1700 -1575 -1450 CT bone_petrous 5 1240K minus ss haploid 183690 0.149 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +XAN036 F Chania_LBA Greece_Crete_LBA Katre St. girl Greece Chania-Crete Chania 35.5172563 24.0149291 contextual -1300 -1275 -1250 bone_petrous 1 1240K minus ss haploid 523492 0.425 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +XAN040 F Chania_LBA Greece_Crete_LBA "Kouklakis plot, Tomb 25, Skull 1" Greece Chania-Crete Chania 35.5172563 24.0149291 contextual -1400 -1350 -1300 bone_petrous 1 1240K minus ss haploid 92628 0.075 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +XAN041 M Chania_LBA Greece_Crete_LBA "Kouklakis plot, Tomb 25, Skull 2" Greece Chania-Crete Chania 35.5172563 24.0149291 contextual -1400 -1350 -1300 K1a+195 J2a1a1a2 bone_petrous 1 1240K minus ss haploid 811689 0.658 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +XAN042 F Chania_LBA Greece_Crete_LBA "Kouklakis plot, Tomb 25, Skull 3" Greece Chania-Crete Chania 35.5172563 24.0149291 contextual -1400 -1350 -1300 bone_petrous 1 1240K minus ss haploid 51921 0.042 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +XAN051 M Chania_LBA Greece_Crete_LBA "Kouklakis plot, Tomb 36, Individual A" Greece Chania-Crete Chania 35.5172563 24.0149291 contextual -1400 -1350 -1300 G2 bone_petrous 2 1240K minus ss haploid 254829 0.207 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 +XAN053 F Chania_LBA Greece_Crete_LBA "Kouklakis plot, Tomb 36, Individual C" Greece Chania-Crete Chania 35.5172563 24.0149291 contextual -1400 -1350 -1300 H4a1 bone_petrous 1 1240K minus ss haploid 532469 0.432 Eirini Skourtanioti; eirini_skourtanioti@eva.mpg.de SkourtaniotiNatEcoEvo2023 \ No newline at end of file diff --git a/2023_Skourtanioti_Aegean/POSEIDON.yml b/2023_Skourtanioti_Aegean/POSEIDON.yml new file mode 100644 index 00000000..158c84bf --- /dev/null +++ b/2023_Skourtanioti_Aegean/POSEIDON.yml @@ -0,0 +1,22 @@ +poseidonVersion: 2.7.1 +title: 2023_Skourtanioti_Aegean +description: Ancient DNA reveals admixture history and endogamy in the prehistoric + Aegean +contributor: +- name: Eirini Skourtanioti + email: eirini_skourtanioti@@eva.mpg.de +packageVersion: 0.1.0 +lastModified: 2024-08-15 +genotypeData: + format: PLINK + genoFile: 2023_Skourtanioti_Aegean.bed + genoFileChkSum: 5c8a69033a3767f80757516d5352c07a + snpFile: 2023_Skourtanioti_Aegean.bim + snpFileChkSum: 433fa85a23f3123bade02348e4628b75 + indFile: 2023_Skourtanioti_Aegean.fam + indFileChkSum: d634637f3d3e2635c24235717dfc9611 + snpSet: 1240K +jannoFile: 2023_Skourtanioti_Aegean.janno +jannoFileChkSum: 1b5f1ae3731d7f518eb23feb172aeae1 +bibFile: 2023_Skourtanioti_Aegean.bib +bibFileChkSum: 689377f09002a6245acd7af8d8a02f91 diff --git a/2023_Wang_NevaliCori-Baja/2023_Wang_NevaliCori-Baja.bed b/2023_Wang_NevaliCori-Baja/2023_Wang_NevaliCori-Baja.bed new file mode 100644 index 00000000..15145784 --- /dev/null +++ b/2023_Wang_NevaliCori-Baja/2023_Wang_NevaliCori-Baja.bed @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:46f8813a3f5e611e1bbc945d05e990da0e234dfd31e2ac3860fec7b504c710a9 +size 2466029 diff --git a/2023_Wang_NevaliCori-Baja/2023_Wang_NevaliCori-Baja.bib b/2023_Wang_NevaliCori-Baja/2023_Wang_NevaliCori-Baja.bib new file mode 100644 index 00000000..29330d47 --- /dev/null +++ b/2023_Wang_NevaliCori-Baja/2023_Wang_NevaliCori-Baja.bib @@ -0,0 +1,11 @@ +@article{2023_Wang_NevaliCori-Baja, + title = {Isotopic and DNA analyses reveal multiscale PPNB mobility and migration across Southeastern Anatolia and the Southern Levant}, + author = {Wang, Xiaoran; Skourtanioti, Eirini; Benz, Marion; Gresky, Julia; Ilgner, Jana; Lucas, Mary; Morsch, Michael; Peters, Joris; Pöllath, Nadja; Ringbauer, Harald; le Roux, Petrus; Schultz, Michael; Krause, Johannes; Roberts, Patrick; Stockhammer, Philipp W.}, + year = {2023}, + journal = {Proceedings of the National Academy of Sciences}, + volume = {120}, + issue = {4}, + doi = {10.1073/pnas.2210611120}, + url = {https://doi.org/10.1073/pnas.2210611120}, +} + diff --git a/2023_Wang_NevaliCori-Baja/2023_Wang_NevaliCori-Baja.bim b/2023_Wang_NevaliCori-Baja/2023_Wang_NevaliCori-Baja.bim new file mode 100644 index 00000000..384f3bce --- /dev/null +++ b/2023_Wang_NevaliCori-Baja/2023_Wang_NevaliCori-Baja.bim @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:f3d3c4aaa95fc68acd08d9695f14fc8e777d6078d59a2ca64bdaeb770d135d4e +size 43313767 diff --git a/2023_Wang_NevaliCori-Baja/2023_Wang_NevaliCori-Baja.fam b/2023_Wang_NevaliCori-Baja/2023_Wang_NevaliCori-Baja.fam new file mode 100644 index 00000000..66368c7e --- /dev/null +++ b/2023_Wang_NevaliCori-Baja/2023_Wang_NevaliCori-Baja.fam @@ -0,0 +1,7 @@ +Jordan_Baja_PPNB BAJ020 0 0 2 0 +Jordan_Baja_PPNB BAJ022 0 0 1 0 +Turkey_NevaliCori_PPNB NEV009 0 0 2 0 +Turkey_NevaliCori_PPNB_lc NEV014 0 0 2 0 +Turkey_NevaliCori_Roman NEV020 0 0 2 0 +Turkey_NevaliCori_Roman NEV021 0 0 2 0 +Turkey_NevaliCori_IronAge NEV030 0 0 1 0 diff --git a/2023_Wang_NevaliCori-Baja/2023_Wang_NevaliCori-Baja.janno b/2023_Wang_NevaliCori-Baja/2023_Wang_NevaliCori-Baja.janno new file mode 100644 index 00000000..9211f425 --- /dev/null +++ b/2023_Wang_NevaliCori-Baja/2023_Wang_NevaliCori-Baja.janno @@ -0,0 +1,8 @@ +Poseidon_ID Genetic_Sex Group_Name Alternative_IDs Collection_ID Country Location Site Latitude Longitude Date_Type Date_C14_Labnr Date_C14_Uncal_BP Date_C14_Uncal_BP_Err Date_BC_AD_Start Date_BC_AD_Median Date_BC_AD_Stop Date_Note MT_Haplogroup Y_Haplogroup Source_Tissue Nr_Libraries Capture_Type UDG Library_Built Genotype_Ploidy Endogenous Nr_SNPs Damage Contamination Contamination_Err Contamination_Meas Contamination_Note Primary_Contact Publication Note Library_Names +BAJ020 F Jordan_Baja_PPNB "Loc. CR 17:127, No 13" Jordan "Ma'an Governorate, Southern Jordan" Ba`ja 35.4625 30.415278 contextual -7200 -7025 -6850 Late PPNB bone_petrous 1 1240K minus ss haploid 0.628 47393 0.47 0.02 0.02 Schmutzi "Eirini Skourtanioti, eirini_skourtanioti@eva.mpg.de" 2023_Wang_NevaliCori-Baja BAJ020.B0101 +BAJ022 M Jordan_Baja_PPNB "Loc. CR 17:130, skull beneath E-wall" Jordan "Ma'an Governorate, Southern Jordan" Ba`ja 35.4625 30.415278 contextual -7200 -7025 -6850 Late PPNB N1a1a E1b1b1b2a1 bone_petrous 1 1240K minus ss haploid 4.345 333935 0.47 0.02;0.0117 0.01;0.009 Schmutzi;ANGSD 249 SNPs on chrX "Eirini Skourtanioti, eirini_skourtanioti@eva.mpg.de" 2023_Wang_NevaliCori-Baja BAJ022.A0101 +NEV009 F Turkey_NevaliCori_PPNB "NC91, G5, HS21, R4, B2, Burial 81" Turkey Şanlıurfa Nevalı Çori 37.519218 38.606972 contextual -8300 -8100 -7900 PPNB II T2c bone_petrous 1 1240K minus ss haploid 7.355 503444 0.482 0.01 0.01 Schmutzi "Eirini Skourtanioti, eirini_skourtanioti@eva.mpg.de" 2023_Wang_NevaliCori-Baja NEV009.A0201 +NEV014 F Turkey_NevaliCori_PPNB_lc "NC90, F7, Planum 25, Burial 91" Turkey Şanlıurfa Nevalı Çori 37.519218 38.606972 C14 MAMS-50452 9134 34 -8527 -8277 bone_petrous 2 1240K minus ss haploid 0.272 27445 0.48 n/a n/a n/a not enough coverage for Schmutzi "Eirini Skourtanioti, eirini_skourtanioti@eva.mpg.de" 2023_Wang_NevaliCori-Baja Low coverage sample - not included in most analyses NEV014.A0101;NEV014.A0301 +NEV020 F Turkey_NevaliCori_Roman Turkey Şanlıurfa Nevalı Çori 37.519218 38.606972 C14 MAMS-50455 1889 25 81 227 L2a2'3'4 bone_petrous 2 1240K minus ss haploid 10.821 884749 0.41 0.01 0.01 Schmutzi "Eirini Skourtanioti, eirini_skourtanioti@eva.mpg.de" 2023_Wang_NevaliCori-Baja NEV020.A0101;NEV020.A0201 +NEV021 F Turkey_NevaliCori_Roman Turkey Şanlıurfa Nevalı Çori 37.519218 38.606972 C14 OxA-8246 1850 50 66 332 J2b2 bone_petrous 2 1240K minus ss haploid 19.266 748879 0.4 0.01 0.01 Schmutzi "Eirini Skourtanioti, eirini_skourtanioti@eva.mpg.de" 2023_Wang_NevaliCori-Baja NEV021.A0101;NEV021.A0301 +NEV030 M Turkey_NevaliCori_IronAge "NC87, J4N, B1, Burial 13" Turkey Şanlıurfa Nevalı Çori 37.519218 38.606972 C14 MAMS-50457 2477 24 -769 -483 J2a1a2a E1b1b1b2a1 bone_petrous 2 1240K minus ss haploid 5.149 559448 0.41 0.01;0.021 0.01;0.007 Schmutzi;ANGSD 983 SNPs on chrX "Eirini Skourtanioti, eirini_skourtanioti@eva.mpg.de" 2023_Wang_NevaliCori-Baja NEV030.A0101;NEV030.A0301 \ No newline at end of file diff --git a/2023_Wang_NevaliCori-Baja/POSEIDON.yml b/2023_Wang_NevaliCori-Baja/POSEIDON.yml new file mode 100644 index 00000000..c69d73e6 --- /dev/null +++ b/2023_Wang_NevaliCori-Baja/POSEIDON.yml @@ -0,0 +1,22 @@ +poseidonVersion: 2.7.1 +title: 2023_Wang_NevaliCori-Baja +description: Isotopic and DNA analyses reveal multiscale PPNB mobility and migration + across Southeastern Anatolia and the Southern Levant +contributor: +- name: Eirini Skourtanioti + email: eirini_skourtanioti@@eva.mpg.de +packageVersion: 0.1.0 +lastModified: 2024-08-16 +genotypeData: + format: PLINK + genoFile: 2023_Wang_NevaliCori-Baja.bed + genoFileChkSum: a4ac49fcad86925113b4714e94c2f3ac + snpFile: 2023_Wang_NevaliCori-Baja.bim + snpFileChkSum: 433fa85a23f3123bade02348e4628b75 + indFile: 2023_Wang_NevaliCori-Baja.fam + indFileChkSum: 11cb3e8ed44053eeb998ed19925d4293 + snpSet: 1240K +jannoFile: 2023_Wang_NevaliCori-Baja.janno +jannoFileChkSum: d75ef4667cb36ac8bfb1eaba456109d0 +bibFile: 2023_Wang_NevaliCori-Baja.bib +bibFileChkSum: dd06d640e4a2f69c574db2b073abc338