diff --git a/packages/2024_Antonio_HighMobility/2024_Antonio_HighMobility.config b/packages/2024_Antonio_HighMobility/2024_Antonio_HighMobility.config new file mode 100644 index 0000000..bd778e1 --- /dev/null +++ b/packages/2024_Antonio_HighMobility/2024_Antonio_HighMobility.config @@ -0,0 +1,41 @@ +// Keep track of config versions +minotaur_release='1.0.0' // The release tag of the poseidon-eager repository used for processing and config file retrieval +config_template_version='1.0.0' +package_config_version='1.0.0' +minotaur_config_base="https://raw.githubusercontent.com/poseidon-framework/poseidon-eager/${minotaur_release}/conf" + +// This configuration file is designed to be a used with the nf-core/eager pipeline. +// Instead of having to specify all other configurations for the Minotaur pipeline +// on runtime, they are all contained in this file and loaded automatically upon +// specifying this config file during runtime. Additionally, any parameters that +// need to be altered from the defaults can be specified here. +// +// The intention is to make it easy for users to understand and reproduce the output +// from processing with the Minotaur workflow processing from the contents of a +// single file. + +// Load configuration profiles. They are loaded from the minotaur_config_base URL, main branch. +// The loaded config includes code that loads the institutional configs from https://github.com/poseidon-framework/minotaur-institutional-configs. +includeConfig "${minotaur_config_base}/Minotaur.config" // Default nf-core/eager parameters for Minotaur processing. + +// The following config file specifies BED files for on-target endogenous DNA calculation and mean coverage as well as pseudohaploid genotyping. +// TODO: Select the appropriate config for the CaptureType of the package. +includeConfig "${minotaur_config_base}/CaptureType_profiles/1240K.config" + +params { + // Keep track of config file versions used when processing + config_profile_description = "${config_profile_description}\n - config_template_version: ${config_template_version}\n - package_config_version: ${package_config_version}" + config_profile_contact = "Thiseas C. Lamnidis (@TCLamnidis)" + + /* + TODO: If you need to change any of the default processing parameters for this package + you can specify these parameters below. + Any parameters not specified in any of the config files default to their nf-core/eager default values. + + For information on all available parameters and their default values see: + https://nf-co.re/eager/2.5.1/parameters + + You can see the latest default values for parameters within poseidon-eager at: + https://github.com/poseidon-framework/poseidon-eager/blob/main/conf/Minotaur.config + */ +} diff --git a/packages/2024_Antonio_HighMobility/2024_Antonio_HighMobility.ssf b/packages/2024_Antonio_HighMobility/2024_Antonio_HighMobility.ssf new file mode 100644 index 0000000..d4d9f05 --- /dev/null +++ b/packages/2024_Antonio_HighMobility/2024_Antonio_HighMobility.ssf @@ -0,0 +1,193 @@ +poseidon_IDs udg library_built notes run_accession study_accession sample_accession sample_alias secondary_sample_accession first_public last_updated instrument_model library_layout library_source instrument_platform library_name library_strategy fastq_ftp fastq_aspera fastq_bytes fastq_md5 read_count submitted_ftp submitted_md5 +R10467 half ds n/a ERR9856917 PRJEB53564 SAMEA110145116 R10467 ERS12243928 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R10467 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/007/ERR9856917/ERR9856917.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/007/ERR9856917/ERR9856917.fastq.gz 1836008625 2b63949c0de9ea3424a90cd3ed351e44 53632190 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856917/10467.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856917/10467.bam.bai d8ce1a9be4ef25848982efb0d0c41f31;902e124568288e3f367215e517953591 +R10469 half ds n/a ERR9856892 PRJEB53564 SAMEA110145117 R10469 ERS12243929 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R10469 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/002/ERR9856892/ERR9856892.fastq.gz 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ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/007/ERR9856997/ERR9856997.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/007/ERR9856997/ERR9856997.fastq.gz 1006420799 0074d536dd230361d0fd8cc2d9716e09 30420855 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856997/10473.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856997/10473.bam.bai 33cbd4f8c300dfae51aff4d03ee84ecf;e25998e6dea4a26bb1953d029821501b +R10474 half ds n/a ERR9856817 PRJEB53564 SAMEA110145120 R10474 ERS12243932 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R10474 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/007/ERR9856817/ERR9856817.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/007/ERR9856817/ERR9856817.fastq.gz 1118419833 1085e502635866ee5e433f3f9d9ce0b5 32748047 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856817/10474.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856817/10474.bam.bai 5a92542d5a2410f944ed5fab010fa859;2434f9d9b0aa6500ce02026a1efd36e5 +R10477 half ds n/a ERR9856850 PRJEB53564 SAMEA110145121 R10477 ERS12243933 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R10477 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/000/ERR9856850/ERR9856850.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/000/ERR9856850/ERR9856850.fastq.gz 1309543169 3c3e67fb9459d1f1c2587e925d43d19a 39898212 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856850/10477.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856850/10477.bam.bai 915c0d90926e3aeb61332aee0a351569;4b7f9b868f3df67563853bc139e8096a +R10478 half ds n/a ERR9856951 PRJEB53564 SAMEA110145122 R10478 ERS12243934 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R10478 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/001/ERR9856951/ERR9856951.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/001/ERR9856951/ERR9856951.fastq.gz 1240484947 34ffc70bcc92b7627d1f7a9c9eb74bb5 35802871 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856951/10478.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856951/10478.bam.bai de13ba4af5cb973b839f010e844172fd;ee639ff1051896279423aab738eab204 +R10487 half ds n/a 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fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/000/ERR9856860/ERR9856860.fastq.gz 2706027341 2fc932c351b3f65ed3b726710045ca33 93397296 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856860/10499.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856860/10499.bam.bai b4fabb9826153245a6e18ad38e365910;f87b5b08e866f9a1fba3994c10874cd5 +R10500 half ds n/a ERR9856856 PRJEB53564 SAMEA110145129 R10500 ERS12243941 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R10500 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/006/ERR9856856/ERR9856856.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/006/ERR9856856/ERR9856856.fastq.gz 1358835115 5024a447a05ecb4ca123bbe58b71d327 41285655 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856856/10500.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856856/10500.bam.bai 280c2030b5a842a3ac44e0ffbeb657fb;139f2cce31f36d858370eb31ce532159 +R10501 half ds n/a ERR9856947 PRJEB53564 SAMEA110145130 R10501 ERS12243942 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R10501 WGS 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2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R10503 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/008/ERR9856838/ERR9856838.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/008/ERR9856838/ERR9856838.fastq.gz 3246203225 5ebcc535ad0dee5a657259e024d07e7c 102286778 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856838/10503.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856838/10503.bam.bai b790d62dece2113bb76669e58ecd7b0f;3cab64a857169530b6bb65095f473a3a +R10506 half ds n/a ERR9856932 PRJEB53564 SAMEA110145133 R10506 ERS12243945 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R10506 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/002/ERR9856932/ERR9856932.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/002/ERR9856932/ERR9856932.fastq.gz 2362079231 e8ddb48ad6dbcde371af8e3d4de7fbd6 68233164 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856932/10506.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856932/10506.bam.bai afbb169f627113aab892f2600c232b6c;a86800adfcb2a99f128230eb7c72f786 +R10507 half ds n/a 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ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856828/10620.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856828/10620.bam.bai 2f3788ff02e69855bd5382f42039ff31;7f43f3535b85da1146a5246fc0351178 +R10625 half ds n/a ERR9856845 PRJEB53564 SAMEA110145138 R10625 ERS12243950 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R10625 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/005/ERR9856845/ERR9856845.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/005/ERR9856845/ERR9856845.fastq.gz 1667114613 5ad33edd4e4fd668417ebb9b8c92d7a1 56515491 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856845/10625.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856845/10625.bam.bai 0458fa954b286bf9d7ffab1da2247930;041692719bd6ec969ad9031a188788f7 +R10626 half ds n/a ERR9856989 PRJEB53564 SAMEA110145139 R10626 ERS12243951 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R10626 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/009/ERR9856989/ERR9856989.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/009/ERR9856989/ERR9856989.fastq.gz 1316568988 be93ef8fc6ef85ff927de8e7f27b0c55 41863949 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856989/10626.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856989/10626.bam.bai e0ab573bce006e742a7bd072882deb32;13d587d55468a310fe01f24ffd847639 +R10631 half ds n/a ERR9856868 PRJEB53564 SAMEA110145140 R10631 ERS12243952 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R10631 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/008/ERR9856868/ERR9856868.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/008/ERR9856868/ERR9856868.fastq.gz 1124096524 183f3e965ddabc8dde2534c6423bac36 34896798 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856868/10631.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856868/10631.bam.bai fbd713166a3765faec119a273e84454f;5cf3faa7348862d65c148e78bf384172 +R10633 half ds n/a ERR9856930 PRJEB53564 SAMEA110145141 R10633 ERS12243953 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R10633 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/000/ERR9856930/ERR9856930.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/000/ERR9856930/ERR9856930.fastq.gz 1696227351 3078f99430f626f18444a1df4e48bdd7 50778756 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856930/10633.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856930/10633.bam.bai 41f81bbab95644e4bc09bc0c321ba966;75dc40ae1243e932784b77eb8bf526ee +R10634 half ds n/a ERR9856839 PRJEB53564 SAMEA110145142 R10634 ERS12243954 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R10634 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/009/ERR9856839/ERR9856839.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/009/ERR9856839/ERR9856839.fastq.gz 1633468218 2d09373e265032fefc00d89945bba092 47609225 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856839/10634.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856839/10634.bam.bai 1afa65fc85b629f71d95a52aec26ad8b;61d02585d8294daa24f96608f4f38086 +R10636 half ds n/a ERR9856992 PRJEB53564 SAMEA110145143 R10636 ERS12243955 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R10636 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/002/ERR9856992/ERR9856992.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/002/ERR9856992/ERR9856992.fastq.gz 1567588693 697a9b511e69953f3eb9d66b9b35dd6f 49741568 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856992/10636.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856992/10636.bam.bai ad4752ab18a7f42b9224870bd63927b1;c90c6c077565378bfc3d8ba8463d0047 +R10654 half ds n/a ERR9856918 PRJEB53564 SAMEA110145144 R10654 ERS12243956 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R10654 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/008/ERR9856918/ERR9856918.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/008/ERR9856918/ERR9856918.fastq.gz 2924236998 3687bd4f1beb6598415e9769c2e55706 86668525 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856918/10654.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856918/10654.bam.bai d933ed43a36916bd94a0d0b4c3fea7c6;4955cc838ffcfe46dd8cf12abecf4c14 +R10656 half ds n/a ERR9856810 PRJEB53564 SAMEA110145145 R10656 ERS12243957 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R10656 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/000/ERR9856810/ERR9856810.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/000/ERR9856810/ERR9856810.fastq.gz 1132770762 0bf5daa108b87cfd14d5e9bd74bff5d5 31187329 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856810/10656.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856810/10656.bam.bai bd1068fd82948eda95fea8be601b53c4;e69ec783a3ab1f2cbc4dbcf6b4530959 +R10657 half ds n/a ERR9856911 PRJEB53564 SAMEA110145146 R10657 ERS12243958 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R10657 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/001/ERR9856911/ERR9856911.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/001/ERR9856911/ERR9856911.fastq.gz 1553813436 274528ca450390cdcd55aea13c20d5cf 44638382 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856911/10657.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856911/10657.bam.bai ec76d89e59b0b9eb168c644490c1957a;e9214a6e73c97b35493802bfe85aa122 +R10658 half ds n/a ERR9856936 PRJEB53564 SAMEA110145147 R10658 ERS12243959 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R10658 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/006/ERR9856936/ERR9856936.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/006/ERR9856936/ERR9856936.fastq.gz 1231618796 905224edd529111779679870a0787618 33860365 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856936/10658.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856936/10658.bam.bai 1d567cf0383e8696b97a7ffc0ee717b1;173eb39ea057859ac115c34da28606e0 +R10659 half ds n/a ERR9856859 PRJEB53564 SAMEA110145148 R10659 ERS12243960 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R10659 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/009/ERR9856859/ERR9856859.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/009/ERR9856859/ERR9856859.fastq.gz 2013424913 f048b953fdb5f42d9f88341b9288233b 60166019 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856859/10659.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856859/10659.bam.bai ff55a57e72b773b1a67ce175fb4aeeca;318db6a3a70b97b5a68f15755c8e9a62 +R10660 half ds n/a ERR9856876 PRJEB53564 SAMEA110145149 R10660 ERS12243961 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R10660 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/006/ERR9856876/ERR9856876.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/006/ERR9856876/ERR9856876.fastq.gz 3051668010 d195b9818120470f7fc236379e1d946f 92610477 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856876/10660.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856876/10660.bam.bai 2a08a1661ba0318d205e1c12574e3e30;57393b3aabea26cb148a60424b623033 +R10665 half ds n/a ERR9856980 PRJEB53564 SAMEA110145150 R10665 ERS12243962 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R10665 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/000/ERR9856980/ERR9856980.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/000/ERR9856980/ERR9856980.fastq.gz 2814306834 e490db4034e7ec5282d36ee96a80a459 82112717 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856980/10665.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856980/10665.bam.bai 434d9766058f49314886744c29b1c667;0bbe8cb3057953bc1de7bdbd1a73145c +R10666 half ds n/a ERR9856833 PRJEB53564 SAMEA110145151 R10666 ERS12243963 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R10666 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/003/ERR9856833/ERR9856833.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/003/ERR9856833/ERR9856833.fastq.gz 3056295460 aba91f06f681240d71a09136c1c682fb 93823726 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856833/10666.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856833/10666.bam.bai 42135abd9b7d8ba354bddaf3496c8b75;948a6319d21e3ab95b03ddb16e864238 +R10667 half ds n/a ERR9856865 PRJEB53564 SAMEA110145152 R10667 ERS12243964 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R10667 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/005/ERR9856865/ERR9856865.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/005/ERR9856865/ERR9856865.fastq.gz 2802024950 512104579d4e1a1b8e798896da0ce860 85669860 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856865/10667.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856865/10667.bam.bai 3993274023d7053de2c1bfb7ff59aa34;54ed406a6912231d08fe366a2ee7875f +R10668 half ds n/a ERR9856964 PRJEB53564 SAMEA110145153 R10668 ERS12243965 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R10668 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/004/ERR9856964/ERR9856964.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/004/ERR9856964/ERR9856964.fastq.gz 2934797273 55ea67aef6a12b6478143367428372c6 88480583 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856964/10668.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856964/10668.bam.bai 1ea07891bb214069d359c4e950644dd4;40f65f7590e96304778f88eb680f50a7 +R10670 half ds n/a ERR9856928 PRJEB53564 SAMEA110145154 R10670 ERS12243966 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R10670 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/008/ERR9856928/ERR9856928.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/008/ERR9856928/ERR9856928.fastq.gz 3177487558 bd675d31fe46dd0461b8e86ca018a2ca 94921693 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856928/10670.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856928/10670.bam.bai e60b5f24881f790b6482373952fd442a;fe985f0a90cf5d65a0f50f4d08bc2bf6 +R10760 half ds n/a ERR9856906 PRJEB53564 SAMEA110145155 R10760 ERS12243967 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R10760 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/006/ERR9856906/ERR9856906.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/006/ERR9856906/ERR9856906.fastq.gz 2283373366 0f622b2bdcb6859b1de036078258305b 77128951 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856906/10760.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856906/10760.bam.bai 5e02aa3cc7cfdefc00b39a993b882b04;ba150ba07da38a5edac8b755aba1cf7c +R10766 half ds n/a ERR9856967 PRJEB53564 SAMEA110145156 R10766 ERS12243968 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R10766 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/007/ERR9856967/ERR9856967.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/007/ERR9856967/ERR9856967.fastq.gz 3282151420 3474e7ae52dd254283edab88694da6cd 111678441 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856967/10766.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856967/10766.bam.bai df16e914f1dd4a28e666ccf01d6278a5;ead40a0432043fbe34febaf33b6296c1 +R10770 half ds n/a ERR9856894 PRJEB53564 SAMEA110145157 R10770 ERS12243969 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R10770 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/004/ERR9856894/ERR9856894.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/004/ERR9856894/ERR9856894.fastq.gz 1000403251 a3ac7afb3e615b2e03060bdd1a9a3437 26093843 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856894/10770.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856894/10770.bam.bai 4fa0f766c1e1bee20a70dab7b332c66d;cd84378bfed988f5c2274fe080318ab7 +R10830 half ds n/a ERR9856812 PRJEB53564 SAMEA110145158 R10830 ERS12243970 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R10830 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/002/ERR9856812/ERR9856812.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/002/ERR9856812/ERR9856812.fastq.gz 1277151649 fdb2b49f1c4a62b3198d1fd501ebd6db 37445425 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856812/10830.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856812/10830.bam.bai 19163eb32a9585f8fd6283425c389f9a;d17497a05b8c7d7467b87b3df5f0c6b0 +R10832 half ds n/a ERR9856891 PRJEB53564 SAMEA110145159 R10832 ERS12243971 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R10832 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/001/ERR9856891/ERR9856891.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/001/ERR9856891/ERR9856891.fastq.gz 995679050 411eff8c4a62cf5f063a6ab02bdd3393 27258429 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856891/10832.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856891/10832.bam.bai 7ee3cbf4a811b59df61f4bd11073b49d;bceec7eb5e5852f3f6fa7f9fe798dc0f +R10836 half ds n/a ERR9856881 PRJEB53564 SAMEA110145160 R10836 ERS12243972 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R10836 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/001/ERR9856881/ERR9856881.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/001/ERR9856881/ERR9856881.fastq.gz 1044559309 91e84658df1398cd539b4143a2f3d4a8 29566919 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856881/10836.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856881/10836.bam.bai adc353de29093cc782e1e775bff229de;e67d0393288c75fd9b70ffcdaccb819c +R10838 half ds n/a ERR9856819 PRJEB53564 SAMEA110145161 R10838 ERS12243973 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R10838 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/009/ERR9856819/ERR9856819.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/009/ERR9856819/ERR9856819.fastq.gz 1304525710 16f26cfa1610876c0ed5d7daedc54ab8 37233666 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856819/10838.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856819/10838.bam.bai 443c3e3d6c1530f433fc5a9fb019b2fe;0aeb9b05a6d6312bf32b3ab9db13636e +R10840 half ds n/a ERR9856999 PRJEB53564 SAMEA110145162 R10840 ERS12243974 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R10840 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/009/ERR9856999/ERR9856999.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/009/ERR9856999/ERR9856999.fastq.gz 1156232629 4b84f9b5f5e86389ca771ec5148ca495 33309866 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856999/10840.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856999/10840.bam.bai 1ff1e5cc5226e6bc07822e9ef8e922b7;75ac133e7753d7cfea27a9c45df04102 +R11109 half ds n/a ERR9856933 PRJEB53564 SAMEA110145163 R11109 ERS12243975 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R11109 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/003/ERR9856933/ERR9856933.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/003/ERR9856933/ERR9856933.fastq.gz 1179186660 09b3527b18d06610f5c27395223953c6 35230913 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856933/11109.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856933/11109.bam.bai aa0e29652fd73b04a1f8c780463d6233;3f8db8cc530fcb1b81f428927f8b4893 +R11111 half ds n/a ERR9856960 PRJEB53564 SAMEA110145164 R11111 ERS12243976 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R11111 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/000/ERR9856960/ERR9856960.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/000/ERR9856960/ERR9856960.fastq.gz 1787262254 7cf14c44f57825f359a256583abf06cf 55339305 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856960/11111.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856960/11111.bam.bai 60267101be9e81903ac304416e22f7b0;fbf571e1a0dd750ccf0ad9aa2c057094 +R11112 half ds n/a ERR9856813 PRJEB53564 SAMEA110145165 R11112 ERS12243977 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R11112 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/003/ERR9856813/ERR9856813.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/003/ERR9856813/ERR9856813.fastq.gz 1635736619 37252dfed956571c93d81b6a3cebd51b 51212855 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856813/11112.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856813/11112.bam.bai 8dc7e0a5e6e04aa1b09a90418c57febd;13052fcacd4ed48481f50f02f86b1d73 +R11113 half ds n/a ERR9856969 PRJEB53564 SAMEA110145166 R11113 ERS12243978 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R11113 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/009/ERR9856969/ERR9856969.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/009/ERR9856969/ERR9856969.fastq.gz 1850552529 d54ab7f04fcd9b5a5e5eb6dd99fcf5a5 57676638 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856969/11113.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856969/11113.bam.bai 4e149c618cfda5da0d72941ee95afae8;7ae90373914938a645a67fb6bd374d12 +R11115 half ds n/a ERR9856914 PRJEB53564 SAMEA110145167 R11115 ERS12243979 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R11115 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/004/ERR9856914/ERR9856914.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/004/ERR9856914/ERR9856914.fastq.gz 1734772684 20afc088f973d5704861375b3a9f3230 53608019 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856914/11115.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856914/11115.bam.bai d3f692ca794a3431994c61b393798643;c7e4b79cd95eaabb71c807d1a5f602ce +R11116 half ds n/a ERR9856827 PRJEB53564 SAMEA110145168 R11116 ERS12243980 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R11116 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/007/ERR9856827/ERR9856827.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/007/ERR9856827/ERR9856827.fastq.gz 1564465503 2ffac51ba7dd3874a533b2985a82bbbd 48575982 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856827/11116.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856827/11116.bam.bai 183bfcf9f83df3501042617d84ced185;47068b705a49786b9eb0d5fe41bdbb7e +R11117 half ds n/a ERR9856971 PRJEB53564 SAMEA110145169 R11117 ERS12243981 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R11117 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/001/ERR9856971/ERR9856971.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/001/ERR9856971/ERR9856971.fastq.gz 1392024890 ef8892b727e814d0573c98e2bf3c9089 40958387 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856971/11117.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856971/11117.bam.bai b99eb9fefe95b3f553a083263746cdef;cf41ebd04e1da6b7ef5e5198f3fa3694 +R11118 half ds n/a ERR9856935 PRJEB53564 SAMEA110145170 R11118 ERS12243982 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R11118 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/005/ERR9856935/ERR9856935.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/005/ERR9856935/ERR9856935.fastq.gz 2422817015 7fbe5943d5e584c63c5015da73840f50 70878639 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856935/11118.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856935/11118.bam.bai aded4cfb8c71bf7e081b94d880be56d2;60ccea92398d096d59afe08681cb83ee +R11119 half ds n/a ERR9856958 PRJEB53564 SAMEA110145171 R11119 ERS12243983 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R11119 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/008/ERR9856958/ERR9856958.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/008/ERR9856958/ERR9856958.fastq.gz 1446736844 12b401621e6fb233ec44331414713fc9 44005055 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856958/11119.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856958/11119.bam.bai c5cae592053c4eb9a7ec43ddbeca992b;6399b0d9cffb2eee7e9fa1a6b749285b +R11120 half ds n/a ERR9856855 PRJEB53564 SAMEA110145172 R11120 ERS12243984 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R11120 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/005/ERR9856855/ERR9856855.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/005/ERR9856855/ERR9856855.fastq.gz 1737062288 c8a1eb63a2e559d6eea658d0fc74e776 53352043 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856855/11120.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856855/11120.bam.bai 1593cabfb958b474b7d39afbd6f8868d;c21f89677e1446443562c2ed0d876a54 +R11121 half ds n/a ERR9856975 PRJEB53564 SAMEA110145173 R11121 ERS12243985 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R11121 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/005/ERR9856975/ERR9856975.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/005/ERR9856975/ERR9856975.fastq.gz 1436611356 2f992df4fe69d09e9a1b1700c5f60844 42900803 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856975/11121.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856975/11121.bam.bai f8d7c7f91ac90fc3f92d0931a9cfe28e;ad2657ab4eae7b47464b5be0582b36f1 +R11391 half ds n/a ERR9856824 PRJEB53564 SAMEA110145174 R11391 ERS12243986 2022-06-20 2022-06-20 NextSeq 500 SINGLE GENOMIC ILLUMINA R11391 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/004/ERR9856824/ERR9856824.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/004/ERR9856824/ERR9856824.fastq.gz 819555036 283ecf69f7ce7600a0d27ac0ef8d1d0d 22672398 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856824/11391.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856824/11391.bam.bai c9956c0636603c33d22f8453097da8e6;1a1d779903f12ff82d41f5886abb37b3 +R11535 half ds n/a ERR9856851 PRJEB53564 SAMEA110145175 R11535 ERS12243987 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R11535 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/001/ERR9856851/ERR9856851.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/001/ERR9856851/ERR9856851.fastq.gz 1659649494 e037d4769461108c354dd5792c80e67c 46927518 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856851/11535.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856851/11535.bam.bai c05b7ee174d3e4dd5cc7e5c74628604e;2ca91fe99bd1532b27d5382b6d1776ad +R11536 half ds n/a ERR9856979 PRJEB53564 SAMEA110145176 R11536 ERS12243988 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R11536 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/009/ERR9856979/ERR9856979.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/009/ERR9856979/ERR9856979.fastq.gz 1471033355 2f9b0b375dbdbbd28dae7e5b8eb87071 41356994 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856979/11536.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856979/11536.bam.bai 0d9d27a069ce40132605d107f7c4caac;f4130b8046e24c6f383b2abe400d6734 +R11538 half ds n/a ERR9856897 PRJEB53564 SAMEA110145177 R11538 ERS12243989 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R11538 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/007/ERR9856897/ERR9856897.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/007/ERR9856897/ERR9856897.fastq.gz 1262388810 02d1b31737858148361b8a46a836b6b5 34800787 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856897/11538.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856897/11538.bam.bai 5abe5a7dd2f878f6c8980830d9c56c68;4149c2f8f1cf81d604ad9e1e4e222e94 +R11540 half ds n/a ERR9856848 PRJEB53564 SAMEA110145178 R11540 ERS12243990 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R11540 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/008/ERR9856848/ERR9856848.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/008/ERR9856848/ERR9856848.fastq.gz 1392609673 49e423d4f7873715de59d3d5e4f4b1ff 38867780 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856848/11540.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856848/11540.bam.bai 692c60ded3345c58f5bc2e390ead9528;72e00aa6c067dc2cb8d7c9d7aa7aa736 +R11541 half ds n/a ERR9856943 PRJEB53564 SAMEA110145179 R11541 ERS12243991 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R11541 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/003/ERR9856943/ERR9856943.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/003/ERR9856943/ERR9856943.fastq.gz 1513712152 8f5dd6b34d248e211d2872b87c5af53f 42232936 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856943/11541.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856943/11541.bam.bai f00f26081d0528370d05c1e98eec7105;34deaca93ec0f18285206b5126e7c953 +R11542 half ds n/a ERR9856977 PRJEB53564 SAMEA110145180 R11542 ERS12243992 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R11542 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/007/ERR9856977/ERR9856977.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/007/ERR9856977/ERR9856977.fastq.gz 1367469288 4afc0de621685b3bfb77c1a6833441d1 38596579 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856977/11542.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856977/11542.bam.bai 0d6aad786238c8e2d7077ac2ea5996ff;3b31a34ba6a5a0d667da731b8de3b289 +R11543 half ds n/a ERR9856939 PRJEB53564 SAMEA110145181 R11543 ERS12243993 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R11543 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/009/ERR9856939/ERR9856939.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/009/ERR9856939/ERR9856939.fastq.gz 2156764076 4d78dde347f67e4a7a937170cfd7efc8 63816142 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856939/11543.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856939/11543.bam.bai 42a47b48758e64a63f981c1707652263;2cd90d72f2c07bbf79a59481f9064bc1 +R11544 half ds n/a ERR9856944 PRJEB53564 SAMEA110145182 R11544 ERS12243994 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R11544 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/004/ERR9856944/ERR9856944.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/004/ERR9856944/ERR9856944.fastq.gz 1404625848 7a5e908135ea231e14f57605e3f19c13 37387345 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856944/11544.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856944/11544.bam.bai 4d28d4e33b511b6e357f93065dda2250;1d3e29a82deaf3190f8079de586d932f +R11545 half ds n/a ERR9856963 PRJEB53564 SAMEA110145183 R11545 ERS12243995 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R11545 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/003/ERR9856963/ERR9856963.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/003/ERR9856963/ERR9856963.fastq.gz 1664209373 e9fb1c98bfcd98dc882df3cea10bd4df 47429353 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856963/11545.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856963/11545.bam.bai 3bbe0cc41419c8266ec7e872ae57584d;4bb1e3802a8af8527f7812d61e196605 +R11546 half ds n/a ERR9856976 PRJEB53564 SAMEA110145184 R11546 ERS12243996 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R11546 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/006/ERR9856976/ERR9856976.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/006/ERR9856976/ERR9856976.fastq.gz 1650914137 92b4f13858a490d5dd6308f6955799dd 46235427 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856976/11546.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856976/11546.bam.bai 2295fc3ebcd5a3d0aab3ea26ddb8a5a4;dc20ed71394420e579bddfc00cd594d5 +R11550 half ds n/a ERR9856871 PRJEB53564 SAMEA110145185 R11550 ERS12243997 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R11550 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/001/ERR9856871/ERR9856871.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/001/ERR9856871/ERR9856871.fastq.gz 2120439697 508785cb0391e02be4bcfbfeccbf1992 62499123 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856871/11550.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856871/11550.bam.bai b692a540f80708b203add3ca48a38e0b;96301608ad642b12b07bd5dfdd3d27e6 +R11552 half ds n/a ERR9856913 PRJEB53564 SAMEA110145186 R11552 ERS12243998 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R11552 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/003/ERR9856913/ERR9856913.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/003/ERR9856913/ERR9856913.fastq.gz 1373017838 9bf97b711b50a7b16ae44682c72212ea 37723709 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856913/11552.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856913/11552.bam.bai 0f8b96250764601e271c98cd049fd170;624b6aafb7a7b2066de595ed249cc13a +R11553 half ds n/a ERR9856990 PRJEB53564 SAMEA110145187 R11553 ERS12243999 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R11553 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/000/ERR9856990/ERR9856990.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/000/ERR9856990/ERR9856990.fastq.gz 1633777027 5e92c3f1aaf0de55b807fef46d9841ff 45534017 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856990/11553.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856990/11553.bam.bai b26d29746bf4eb318e23fbfbdcec82bd;1a3ffbda6b21f3627676e977f8c3c4e5 +R11554 half ds n/a ERR9856945 PRJEB53564 SAMEA110145188 R11554 ERS12244000 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R11554 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/005/ERR9856945/ERR9856945.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/005/ERR9856945/ERR9856945.fastq.gz 1586500077 ff72b0843c51588e29ce38adbd6a3534 44355337 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856945/11554.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856945/11554.bam.bai 3862fb6fcbdc65d76ad60167d6907f17;c4c0d165f8eaefde9a677db50de75744 +R11555 half ds n/a ERR9856925 PRJEB53564 SAMEA110145189 R11555 ERS12244001 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R11555 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/005/ERR9856925/ERR9856925.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/005/ERR9856925/ERR9856925.fastq.gz 1088545738 6e7feb384b244e4edb2fdcf321add610 31224595 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856925/11555.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856925/11555.bam.bai 268430a73864b15ea859ca564da0110d;2f05d7e83509289295a960e6d31595da +R11556 half ds n/a ERR9856822 PRJEB53564 SAMEA110145190 R11556 ERS12244002 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R11556 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/002/ERR9856822/ERR9856822.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/002/ERR9856822/ERR9856822.fastq.gz 722854233 bec08e8f594a3303908318faa4e7564d 20309542 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856822/11556.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856822/11556.bam.bai 6df0704bd5334a3c1f74aca572cdf13b;58447a4dbdeddfa7fd40252dcc0469ae +R11557 half ds n/a ERR9856869 PRJEB53564 SAMEA110145191 R11557 ERS12244003 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R11557 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/009/ERR9856869/ERR9856869.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/009/ERR9856869/ERR9856869.fastq.gz 1963434211 26865e7f626bf04d5ddc2623acc9574c 57079608 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856869/11557.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856869/11557.bam.bai e252bf601758517a49b3d7b02c3116ee;3202be0dbfb2f7f42b27381964632b45 +R11558 half ds n/a ERR9856832 PRJEB53564 SAMEA110145192 R11558 ERS12244004 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R11558 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/002/ERR9856832/ERR9856832.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/002/ERR9856832/ERR9856832.fastq.gz 1403375298 c9887d6efc0e54a45b97d2a290cda8c2 38453582 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856832/11558.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856832/11558.bam.bai c5bb8f06776bd635411c9a91f37541f6;903b97b9af380ead110cdd0db9841f9c +R11559 half ds n/a ERR9856900 PRJEB53564 SAMEA110145193 R11559 ERS12244005 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R11559 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/000/ERR9856900/ERR9856900.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/000/ERR9856900/ERR9856900.fastq.gz 2159411157 3ca1e07a7f942d4287856474c6ac848b 66226936 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856900/11559.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856900/11559.bam.bai 568728a097a1f818c2ef0fe874fa584e;c37a844ff218abb96dd58491b365b6cb +R11560 half ds n/a ERR9856863 PRJEB53564 SAMEA110145194 R11560 ERS12244006 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R11560 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/003/ERR9856863/ERR9856863.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/003/ERR9856863/ERR9856863.fastq.gz 1283998129 356fb0903f71fdb358661babf6a65cf5 36148825 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856863/11560.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856863/11560.bam.bai 67462c75101966e0081235ddc6660197;323321db38876e4fed9c9be8c8e73738 +R11561 half ds n/a ERR9856934 PRJEB53564 SAMEA110145195 R11561 ERS12244007 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R11561 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/004/ERR9856934/ERR9856934.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/004/ERR9856934/ERR9856934.fastq.gz 1635260310 2d101d383643d0f7075227f5704677e2 45960468 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856934/11561.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856934/11561.bam.bai 966aaa09cf4e0b3d03bee4c630aaa740;a53a86370efef040cb98d5923d8f9543 +R11563 half ds n/a ERR9856899 PRJEB53564 SAMEA110145196 R11563 ERS12244008 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R11563 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/009/ERR9856899/ERR9856899.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/009/ERR9856899/ERR9856899.fastq.gz 1575718812 61ab965b0c20032703df76589369be1a 45590454 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856899/11563.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856899/11563.bam.bai 27bfd9af02668a5b17445727290dac29;cc017d697edba699f163177f6d030d91 +R11651 half ds n/a ERR9856929 PRJEB53564 SAMEA110145197 R11651 ERS12244009 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R11651 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/009/ERR9856929/ERR9856929.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/009/ERR9856929/ERR9856929.fastq.gz 1502154242 11291839f4ede674e42cf4f34cf2ee7a 41430353 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856929/11651.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856929/11651.bam.bai 0b1853a799614ecce5d87afe7f0a982f;901c71c44a77fff45aceb01f023eaaf7 +R11653 half ds n/a ERR9856895 PRJEB53564 SAMEA110145198 R11653 ERS12244010 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R11653 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/005/ERR9856895/ERR9856895.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/005/ERR9856895/ERR9856895.fastq.gz 3213340785 93a9aa8395b8f4b00357be2c9a3caa63 104476656 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856895/11653.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856895/11653.bam.bai c267f9a04b45a84de90a5af825709ae7;6c3e3810ab2532289b8f0be405439baf +R11655 half ds n/a ERR9856843 PRJEB53564 SAMEA110145199 R11655 ERS12244011 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R11655 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/003/ERR9856843/ERR9856843.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/003/ERR9856843/ERR9856843.fastq.gz 2335163449 b59f38754564676f26af1d8b5ea0e22c 67357261 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856843/11655.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856843/11655.bam.bai 6181823a1e215cb49c9e077692e4160d;22673f17bd7e70303fcc6d640f617928 +R11668 half ds n/a ERR9856826 PRJEB53564 SAMEA110145200 R11668 ERS12244012 2022-06-20 2022-06-20 NextSeq 500 SINGLE GENOMIC ILLUMINA R11668 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/006/ERR9856826/ERR9856826.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/006/ERR9856826/ERR9856826.fastq.gz 262031558 cda66f6a81a8ebfc2d72617cb22e7c28 7002848 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856826/11668.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856826/11668.bam.bai 96420c2fc016384864d8c008e9d8404d;65664a6436271cb88618e439a5e9d940 +R11675 half ds n/a ERR9856878 PRJEB53564 SAMEA110145201 R11675 ERS12244013 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R11675 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/008/ERR9856878/ERR9856878.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/008/ERR9856878/ERR9856878.fastq.gz 1665934691 64967676f240cf4f332ee3ebf2477cd6 46337187 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856878/11675.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856878/11675.bam.bai 59bf15e304123619c5d40186618de0cb;565b124dedeadc82ce0d0dc160c3d1fb +R11678 half ds n/a ERR9856847 PRJEB53564 SAMEA110145202 R11678 ERS12244014 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R11678 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/007/ERR9856847/ERR9856847.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/007/ERR9856847/ERR9856847.fastq.gz 1820761200 c58ec369f5b4f4e852a7000664b09bd6 52077475 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856847/11678.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856847/11678.bam.bai 93cc7ea12a101f0c7c6c42172af0cdb4;c5fd2497d4eb1d124e32c2aba8bd93f7 +R11713 half ds n/a ERR9856991 PRJEB53564 SAMEA110145203 R11713 ERS12244015 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R11713 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/001/ERR9856991/ERR9856991.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/001/ERR9856991/ERR9856991.fastq.gz 2870151316 5cd50de4fcf27c28e8f2c36458fe1164 88494458 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856991/11713.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856991/11713.bam.bai 4b20e92f18fa7ecda978e295affd5cc6;9dc1d40c375dfa02a84ef32bc3e5ef99 +R11714 half ds n/a ERR9856872 PRJEB53564 SAMEA110145204 R11714 ERS12244016 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R11714 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/002/ERR9856872/ERR9856872.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/002/ERR9856872/ERR9856872.fastq.gz 2038517012 2b1c5a8f91b10ddc33dbc6cb29558df5 60576948 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856872/11714.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856872/11714.bam.bai 3b6949d4c788c2205646acfd8b5ac7a1;85417010e1fc616d10112609e32212f8 +R11828 half ds n/a ERR9856952 PRJEB53564 SAMEA110145205 R11828 ERS12244017 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R11828 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/002/ERR9856952/ERR9856952.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/002/ERR9856952/ERR9856952.fastq.gz 1569369998 ed4ee1bff1f3bc87ea7f56820bfa23fd 46034903 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856952/11828.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856952/11828.bam.bai ac49282ce86612d23ff5fe258847f2cc;f8b98974e5687c77202035793849b638 +R11829 half ds n/a ERR9856842 PRJEB53564 SAMEA110145206 R11829 ERS12244018 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R11829 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/002/ERR9856842/ERR9856842.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/002/ERR9856842/ERR9856842.fastq.gz 1682385752 e3d5f1fbbcb1b7f02cb068830729ac17 50927999 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856842/11829.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856842/11829.bam.bai a5e45230f9400cd1d5f2ef717e5e5bdf;925625abaeda3606d3dda1dc7be65895 +R11832 half ds n/a ERR9856834 PRJEB53564 SAMEA110145207 R11832 ERS12244019 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R11832 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/004/ERR9856834/ERR9856834.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/004/ERR9856834/ERR9856834.fastq.gz 1698126226 867b80d52a77100bd675d2fd7458f7fa 50584246 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856834/11832.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856834/11832.bam.bai 15f0c91443e5e17e893ba28fe658d52d;ede99b07983d1a957a8b051885153619 +R11833 half ds n/a ERR9856903 PRJEB53564 SAMEA110145208 R11833 ERS12244020 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R11833 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/003/ERR9856903/ERR9856903.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/003/ERR9856903/ERR9856903.fastq.gz 1670826253 8a987b5d2d196d847f7d0d2ae9c8c288 47257934 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856903/11833.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856903/11833.bam.bai 21a6414ba6652472c9411cc831cddefb;dbc91a7fa5555b1f080637576b99f38e +R11834 half ds n/a ERR9856956 PRJEB53564 SAMEA110145209 R11834 ERS12244021 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R11834 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/006/ERR9856956/ERR9856956.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/006/ERR9856956/ERR9856956.fastq.gz 1731917734 48300f8bf0fd2365fd7a824fa1d6dc4e 47243214 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856956/11834.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856956/11834.bam.bai d5295eb65bf5c885f1bb9659a6246a50;6aa38ccb83a209f6aba1536af559262e +R11835 half ds n/a ERR9856954 PRJEB53564 SAMEA110145210 R11835 ERS12244022 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R11835 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/004/ERR9856954/ERR9856954.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/004/ERR9856954/ERR9856954.fastq.gz 1791412753 ef84f2df908ad31d997690da3a47f317 54668478 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856954/11835.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856954/11835.bam.bai 66c9625e554f0ff96be08f8bb8fb449f;6a082ba5ca3efe071f7b4ab6f0e1c3b3 +R11836 half ds n/a ERR9856883 PRJEB53564 SAMEA110145211 R11836 ERS12244023 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R11836 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/003/ERR9856883/ERR9856883.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/003/ERR9856883/ERR9856883.fastq.gz 1566354644 25ca33fa9555fc3bc6a4c0921966eab8 44839521 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856883/11836.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856883/11836.bam.bai 5dfd49e89d12f5bfbb235ee5919ece4f;f7613c57a5d68074959f24ed8065e58d +R11866 half ds n/a ERR9856919 PRJEB53564 SAMEA110145212 R11866 ERS12244024 2022-06-20 2022-06-20 NextSeq 500 SINGLE GENOMIC ILLUMINA R11866 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/009/ERR9856919/ERR9856919.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/009/ERR9856919/ERR9856919.fastq.gz 476386097 9d27ddb6325cf84409dd658a897c559a 12904751 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856919/11866.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856919/11866.bam.bai 813d91ffa9faa89ac95ed9f3338657f6;8cd5626eb7d8a788be05845d4e655167 +R11867 half ds n/a ERR9856867 PRJEB53564 SAMEA110145213 R11867 ERS12244025 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R11867 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/007/ERR9856867/ERR9856867.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/007/ERR9856867/ERR9856867.fastq.gz 741924908 400d5bd3aef808887e0d5175fe833441 21236013 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856867/11867.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856867/11867.bam.bai 475c10e74e9c75aee85f9ca48c0ab90a;d2003a242230cb5a58f5290885cb3f8d +R11868 half ds n/a ERR9856962 PRJEB53564 SAMEA110145214 R11868 ERS12244026 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R11868 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/002/ERR9856962/ERR9856962.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/002/ERR9856962/ERR9856962.fastq.gz 1449951652 6393880e082ad08491611f059d779407 43790013 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856962/11868.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856962/11868.bam.bai 14b6dabd00e8663811aa1100e3dd5c4e;7f58bbdf04af62114cf65f816027c709 +R11872 half ds n/a ERR9856880 PRJEB53564 SAMEA110145215 R11872 ERS12244027 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R11872 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/000/ERR9856880/ERR9856880.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/000/ERR9856880/ERR9856880.fastq.gz 1100741491 93f67c4bf7e3e4a95df3e20f9348442a 32960341 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856880/11872.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856880/11872.bam.bai 54a54349ea2e35d7456fae5f306640ea;478d5c2af7c4e19974a155a8f4b8dd2a +R11873 half ds n/a ERR9856970 PRJEB53564 SAMEA110145216 R11873 ERS12244028 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R11873 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/000/ERR9856970/ERR9856970.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/000/ERR9856970/ERR9856970.fastq.gz 1005301007 2b52ccdcdffd5ef11dcedd631c242432 30320559 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856970/11873.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856970/11873.bam.bai a71c5a073ea939d08be9b106c596410e;f94454c57cb03804c098dfe6c3064344 +R11875 half ds n/a ERR9856853 PRJEB53564 SAMEA110145217 R11875 ERS12244029 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R11875 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/003/ERR9856853/ERR9856853.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/003/ERR9856853/ERR9856853.fastq.gz 1275104742 cbc2b5d9a4af99a7b49e9ed7d361136c 35272401 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856853/11875.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856853/11875.bam.bai f803761d656809f496fd8bf4fc2acfae;1fecc47159ed46fc4c4af115e9a43a24 +R11877 half ds n/a ERR9856983 PRJEB53564 SAMEA110145218 R11877 ERS12244030 2022-06-20 2022-06-20 NextSeq 500 SINGLE GENOMIC ILLUMINA R11877 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/003/ERR9856983/ERR9856983.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/003/ERR9856983/ERR9856983.fastq.gz 266491413 42e39471cf0e2dcadd7e5551c466b3b7 7676832 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856983/11877.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856983/11877.bam.bai bd31f5fe2dfeff2556ba278b72317baa;27da2578e0877092c27ddcb37780c79b +R12229 half ds n/a ERR9856972 PRJEB53564 SAMEA110145219 R12229 ERS12244031 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R12229 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/002/ERR9856972/ERR9856972.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/002/ERR9856972/ERR9856972.fastq.gz 2440068570 afcd43dee0501ce7ea433b8044755b31 79043334 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856972/12229.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856972/12229.bam.bai 6cb4027d1d19331ca9644392ab879937;15c7e7c4c5568fd0842069303effcd39 +R1223 half ds n/a ERR9856985 PRJEB53564 SAMEA110145220 R1223 ERS12244032 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R1223 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/005/ERR9856985/ERR9856985.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/005/ERR9856985/ERR9856985.fastq.gz 1024716423 a50c77ad08b51e5d1ba921c8f86548a8 27850765 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856985/1223.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856985/1223.bam.bai ab896e4672c28c185573ea8e9ef119bf;0adce010e03f53b90c8aa778d354236b +R12233 half ds n/a ERR9856908 PRJEB53564 SAMEA110145221 R12233 ERS12244033 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R12233 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/008/ERR9856908/ERR9856908.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/008/ERR9856908/ERR9856908.fastq.gz 748457145 04890926140de648d8c5a41f24384952 21464747 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856908/12233.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856908/12233.bam.bai 741beb05f85d57be1b3af6a345838eae;0718e835eb5b4a91d675dbd505a7ad6c +R12245 half ds n/a ERR9856835 PRJEB53564 SAMEA110145222 R12245 ERS12244034 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R12245 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/005/ERR9856835/ERR9856835.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/005/ERR9856835/ERR9856835.fastq.gz 668743577 e1c6f72999619ed2eb2e484ddd241ef4 16858954 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856835/12245.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856835/12245.bam.bai e719aefca5c815ced7c20f82f2d3208d;ed899d071987d7855bc76b2bb083296f +R12246 half ds n/a ERR9856940 PRJEB53564 SAMEA110145223 R12246 ERS12244035 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R12246 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/000/ERR9856940/ERR9856940.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/000/ERR9856940/ERR9856940.fastq.gz 666856170 e64e14fd48dd56dfc61cab37b29717c2 17108087 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856940/12246.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856940/12246.bam.bai f7c465f5c436268976ce423d38a59f5b;f2caf548401f58621237b5b5e82e6ba1 +R1225 half ds n/a ERR9856836 PRJEB53564 SAMEA110145224 R1225 ERS12244036 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R1225 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/006/ERR9856836/ERR9856836.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/006/ERR9856836/ERR9856836.fastq.gz 1195626478 13ba178950190fa1c3f68821d7ad2140 32505568 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856836/1225.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856836/1225.bam.bai b22625d5d23ada8bee9cdac2f0bd837d;657a55cd86ade8d7f73d44b02c14e7b1 +R1291 half ds n/a ERR9856993 PRJEB53564 SAMEA110145225 R1291 ERS12244037 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R1291 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/003/ERR9856993/ERR9856993.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/003/ERR9856993/ERR9856993.fastq.gz 1221114082 c08b8b890f58e5be423e89018e8c1504 35261849 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856993/1291.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856993/1291.bam.bai 77ccdcfb695c3959c321488e7e7fa234;ba934c2de074e8c8e957288717115c26 +R1292 half ds n/a ERR9856858 PRJEB53564 SAMEA110145226 R1292 ERS12244038 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R1292 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/008/ERR9856858/ERR9856858.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/008/ERR9856858/ERR9856858.fastq.gz 1020434498 f73e2008a455e6deaf2a957a8612b550 30531691 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856858/1292.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856858/1292.bam.bai fa4fe0dd44c6bbfdbe7b9fccb1b59398;689d13600f8ed3e3557d9903e6708786 +R1294 half ds n/a ERR9856957 PRJEB53564 SAMEA110145227 R1294 ERS12244039 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R1294 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/007/ERR9856957/ERR9856957.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/007/ERR9856957/ERR9856957.fastq.gz 993219833 4a0e895de9baa93a7e6cfd53ccd59b5c 28192693 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856957/1294.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856957/1294.bam.bai 01fbe3cb50fc9d3ba187931ae6adc333;7d5bcf8f6f90c75cf3dbb58552f6ca50 +R1554 half ds n/a ERR9856889 PRJEB53564 SAMEA110145228 R1554 ERS12244040 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R1554 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/009/ERR9856889/ERR9856889.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/009/ERR9856889/ERR9856889.fastq.gz 1175720191 2286f009f1d46ca759bc74288c9dd027 33159159 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856889/1554.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856889/1554.bam.bai 42a4cd14356503966c3cef0c033fb804;6cfa5f6571380b6a40286063f510ce92 +R1555 half ds n/a ERR9856927 PRJEB53564 SAMEA110145229 R1555 ERS12244041 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R1555 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/007/ERR9856927/ERR9856927.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/007/ERR9856927/ERR9856927.fastq.gz 1134027524 bb747b579a0b845dbf6a16bcbeb102a9 31645436 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856927/1555.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856927/1555.bam.bai 5861b5566722f5b3f87db1306f0a58d4;4229db1cd606c8486b8fa7bade4768ab +R1556 half ds n/a ERR9856981 PRJEB53564 SAMEA110145230 R1556 ERS12244042 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R1556 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/001/ERR9856981/ERR9856981.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/001/ERR9856981/ERR9856981.fastq.gz 1169979168 c799a957ca5adc9eaaf571604023c4a2 34114073 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856981/1556.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856981/1556.bam.bai 6501a94db54dbaa22064b6627dbb1bc8;0810f21a00d1d0f9230649fa61e441e4 +R1557 half ds n/a ERR9856949 PRJEB53564 SAMEA110145231 R1557 ERS12244043 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R1557 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/009/ERR9856949/ERR9856949.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/009/ERR9856949/ERR9856949.fastq.gz 1098614292 e4366241399707ec107642aeeb0e5f88 31652972 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856949/1557.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856949/1557.bam.bai 1923f5ff2b9127eb5ffd1782d3b67901;da26ad1d0b46e321c8fcf6f3a1177598 +R1874 half ds n/a ERR9856942 PRJEB53564 SAMEA110145232 R1874 ERS12244044 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R1874 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/002/ERR9856942/ERR9856942.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/002/ERR9856942/ERR9856942.fastq.gz 1689620740 79e8557592e9fce87f5fcebe0cf9e70d 47783474 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856942/1874.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856942/1874.bam.bai c05996121b6857073ee8154db9b9da05;a08aa7ac7e8c08cc8dd4e01ebc0c6b63 +R2040 half ds n/a ERR9856870 PRJEB53564 SAMEA110145233 R2040 ERS12244045 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R2040 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/000/ERR9856870/ERR9856870.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/000/ERR9856870/ERR9856870.fastq.gz 1024362520 696edb2adb8f379dacb0018471ab56a5 29731707 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856870/2040.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856870/2040.bam.bai 46e4d0dc6edb063081e2cb1ac08db5e2;c32f3a55c861cf789456f9698d1a6161 +R2041 half ds n/a ERR9856893 PRJEB53564 SAMEA110145234 R2041 ERS12244046 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R2041 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/003/ERR9856893/ERR9856893.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/003/ERR9856893/ERR9856893.fastq.gz 1099503144 6e3fb3292a1772e0a9909f02a77708b9 31099850 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856893/2041.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856893/2041.bam.bai 3c7d49a673917c453a5ae2d66ab47552;8a82be5abfd3fc6134ba742821a52390 +R2042 half ds n/a ERR9856988 PRJEB53564 SAMEA110145235 R2042 ERS12244047 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R2042 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/008/ERR9856988/ERR9856988.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/008/ERR9856988/ERR9856988.fastq.gz 1012963647 533f8a6d22ebaaa26125a08404e063fe 29896090 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856988/2042.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856988/2042.bam.bai 1e4d5f9bb59dfe0d5787b2728ceae7aa;f17e2bec697dfb1e1becac53a5fcab2a +R2045 half ds n/a ERR9856937 PRJEB53564 SAMEA110145236 R2045 ERS12244048 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R2045 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/007/ERR9856937/ERR9856937.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/007/ERR9856937/ERR9856937.fastq.gz 904264970 13a5bb145934577f1b808501d74d2fa3 25872458 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856937/2045.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856937/2045.bam.bai 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ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856953/2051.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856953/2051.bam.bai 7746c1417011833f3ce044862ef025fc;5176eb5e95951f201314976f1177599c +R2053 half ds n/a ERR9856948 PRJEB53564 SAMEA110145239 R2053 ERS12244051 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R2053 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/008/ERR9856948/ERR9856948.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/008/ERR9856948/ERR9856948.fastq.gz 1765390929 52f80bc20fff7138289ba21e003b5eb4 54223768 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856948/2053.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856948/2053.bam.bai 62dd1c779210e2a9e0a90d7629bd711c;ea55d514c58ca2a7a3fcb2afd3128444 +R2055 half ds n/a ERR9856915 PRJEB53564 SAMEA110145240 R2055 ERS12244052 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R2055 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/005/ERR9856915/ERR9856915.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/005/ERR9856915/ERR9856915.fastq.gz 1444265577 16ab488df8c3e4a38b5037dc760865b0 37908772 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856915/2055.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856915/2055.bam.bai 47f62c1c7b51d0d0d94e9bf13d098075;9404995ead3b67f32aa9b04bc59f89ee +R2057 half ds n/a ERR9856974 PRJEB53564 SAMEA110145241 R2057 ERS12244053 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R2057 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/004/ERR9856974/ERR9856974.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/004/ERR9856974/ERR9856974.fastq.gz 1088606936 f50968d3960d7d24f07468d798910fa5 29033514 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856974/2057.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856974/2057.bam.bai 7f16eb82e06cb7f62d6cc6db5c1907ca;dbe21a2de6a3dbe3a9b43c2525c90183 +R2058 half ds n/a ERR9856816 PRJEB53564 SAMEA110145242 R2058 ERS12244054 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R2058 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/006/ERR9856816/ERR9856816.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/006/ERR9856816/ERR9856816.fastq.gz 1121490858 c2db7ee57b47d815fc41d4478008fa89 31038631 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856816/2058.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856816/2058.bam.bai 0de39c8ab1fb008c302d32c76f9f31e2;a9fa870a631807554c950092c2aa40a9 +R2065 half ds n/a ERR9856982 PRJEB53564 SAMEA110145243 R2065 ERS12244055 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R2065 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/002/ERR9856982/ERR9856982.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/002/ERR9856982/ERR9856982.fastq.gz 1588794292 36508cd76ffc5c5644d26971de3f9d53 47932466 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856982/2065.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856982/2065.bam.bai 2e88bcb5d192f253b5e0a82aa1d6f0cc;2004d223719e545f56fae199488791ac +R2066 half ds n/a ERR9856811 PRJEB53564 SAMEA110145244 R2066 ERS12244056 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R2066 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/001/ERR9856811/ERR9856811.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/001/ERR9856811/ERR9856811.fastq.gz 1261419072 2dc1b3f4625afd15515fc27b763866bd 34977738 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856811/2066.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856811/2066.bam.bai ba52113668a0117fc0c06feb692f87f6;fe0bba2efba77b5ffae241415bb246f5 +R2200 half ds n/a ERR9856924 PRJEB53564 SAMEA110145245 R2200 ERS12244057 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R2200 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/004/ERR9856924/ERR9856924.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/004/ERR9856924/ERR9856924.fastq.gz 1837231409 e098df1add5d2c443896ec88298cb0fa 59206472 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856924/2200.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856924/2200.bam.bai e2841d03b924d2d58d2b2d0f54c927ca;0e1ca421da8b0515867fa6b3a279e0c1 +R2201 half ds n/a ERR9856854 PRJEB53564 SAMEA110145246 R2201 ERS12244058 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R2201 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/004/ERR9856854/ERR9856854.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/004/ERR9856854/ERR9856854.fastq.gz 1147873261 7748519bf4d172c831a84923c384a15f 35718514 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856854/2201.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856854/2201.bam.bai 26d8433ead01bb59ef3547243ed6aac4;e91f1b5f0ed272f1dbfb26447e60f57c +R2202 half ds n/a ERR9856907 PRJEB53564 SAMEA110145247 R2202 ERS12244059 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R2202 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/007/ERR9856907/ERR9856907.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/007/ERR9856907/ERR9856907.fastq.gz 1286378777 7948fac7df09eb5adb551f8a07ba1b12 32575886 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856907/2202.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856907/2202.bam.bai 93da3995740e6c503d310d1442b5f2c8;eccd4a04c8b0a8a80f0b3a1da0049f6a +R2204 half ds n/a ERR9856886 PRJEB53564 SAMEA110145248 R2204 ERS12244060 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R2204 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/006/ERR9856886/ERR9856886.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/006/ERR9856886/ERR9856886.fastq.gz 1743353223 139c6e95a869c5a24f6ab4a43f19bb81 53319361 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856886/2204.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856886/2204.bam.bai 8373893a0f9e9e433ecbd5f016d552af;c2cce972f3bff29f2f62d00cd22bcde4 +R2206 half ds n/a ERR9856814 PRJEB53564 SAMEA110145249 R2206 ERS12244061 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R2206 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/004/ERR9856814/ERR9856814.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/004/ERR9856814/ERR9856814.fastq.gz 1478946407 cda9bdc6ea5a99dd9368d476f2e4dae7 38567060 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856814/2206.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856814/2206.bam.bai 41f5a3c6bc7288b7f923c7377a27125a;00b0d760f7e78b33162032b791b164ea +R2207 half ds n/a ERR9856841 PRJEB53564 SAMEA110145250 R2207 ERS12244062 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R2207 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/001/ERR9856841/ERR9856841.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/001/ERR9856841/ERR9856841.fastq.gz 1095074113 aa06f58d96b9576ba877e68324de15bf 34208039 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856841/2207.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856841/2207.bam.bai aa8062a5a956c90a08aee187a56689be;5be260dafec6032672c323d0e0056f1a +R2208 half ds n/a ERR9857001 PRJEB53564 SAMEA110145251 R2208 ERS12244063 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R2208 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/001/ERR9857001/ERR9857001.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/001/ERR9857001/ERR9857001.fastq.gz 1279667676 c89cd0669124996d6d2b1efee1a5497a 40053647 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9857001/2208.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9857001/2208.bam.bai c479a3105b0efe0967f6af5671bd53e7;d1233c07fe3dda4cc847c2170f5bd985 +R2209 half ds n/a ERR9856998 PRJEB53564 SAMEA110145252 R2209 ERS12244064 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R2209 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/008/ERR9856998/ERR9856998.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/008/ERR9856998/ERR9856998.fastq.gz 1887093454 1cc3fd812f5d0da1eb5d4f9794fb1404 56133298 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856998/2209.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856998/2209.bam.bai 143d4a4e87848aef5a62125ecbd2a765;9fff7a3e511cc41ad3db27f8a28487e8 +R2210 half ds n/a ERR9856926 PRJEB53564 SAMEA110145253 R2210 ERS12244065 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R2210 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/006/ERR9856926/ERR9856926.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/006/ERR9856926/ERR9856926.fastq.gz 1293021396 63ab4efbebedac2be171d58255b98427 36515196 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856926/2210.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856926/2210.bam.bai 748c2631e0b6b41bbc43ce2d2ee85114;85f4a0fea70a5c9b17c5f5f1547a1360 +R2211 half ds n/a ERR9856898 PRJEB53564 SAMEA110145254 R2211 ERS12244066 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R2211 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/008/ERR9856898/ERR9856898.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/008/ERR9856898/ERR9856898.fastq.gz 1720836202 5471f61cb4788aa3f102bc2e5dc9f690 47827563 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856898/2211.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856898/2211.bam.bai 8926bb49726bee73faffaad82c7a053c;e3fb5eb5f8e6131d4b568b90ba11f686 +R3359 half ds n/a ERR9856820 PRJEB53564 SAMEA110145255 R3359 ERS12244067 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R3359 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/000/ERR9856820/ERR9856820.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/000/ERR9856820/ERR9856820.fastq.gz 1432604579 304b715fb1f9e6d0c73e74f68669e7fe 41554405 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856820/3359.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856820/3359.bam.bai 6d51b2f255fb560b484d3e99e94d9eb8;44cbaf3b65e11607770b4ae23a7bb2e4 +R3361 half ds n/a ERR9856986 PRJEB53564 SAMEA110145256 R3361 ERS12244068 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R3361 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/006/ERR9856986/ERR9856986.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/006/ERR9856986/ERR9856986.fastq.gz 1795652536 6abbc640f164d753c62fa577577e904d 49004973 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856986/3361.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856986/3361.bam.bai 5e66c630d0fae92a3440473b6338763e;cd853ed3991646aae768fc78734deb79 +R3473 half ds n/a ERR9856844 PRJEB53564 SAMEA110145257 R3473 ERS12244069 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R3473 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/004/ERR9856844/ERR9856844.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/004/ERR9856844/ERR9856844.fastq.gz 1469947335 00406c5a3fb00cdb71092481f712f089 43974873 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856844/3473.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856844/3473.bam.bai cf96457da0ef7c397a0bdf047af8a184;1fe6245ea59e61421198956d79b92dfc +R3476 half ds n/a ERR9856818 PRJEB53564 SAMEA110145258 R3476 ERS12244070 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R3476 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/008/ERR9856818/ERR9856818.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/008/ERR9856818/ERR9856818.fastq.gz 1665183215 1643904752ff13be94ad7c99f1440a1d 42350896 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856818/3476.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856818/3476.bam.bai db54df60f2a28f227cc867d0f58a217d;ce25bbf1ce8b101d64820eaa560b7f6d +R3477 half ds n/a ERR9856862 PRJEB53564 SAMEA110145259 R3477 ERS12244071 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R3477 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/002/ERR9856862/ERR9856862.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/002/ERR9856862/ERR9856862.fastq.gz 1197144815 c444e82882aa92cbe52d3e0c749719d3 31357028 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856862/3477.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856862/3477.bam.bai 5bf4eea6f9937e293c88bff3ee20263f;a6590df4316cde970d9020af431e360f +R3478 half ds n/a ERR9857000 PRJEB53564 SAMEA110145260 R3478 ERS12244072 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R3478 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/000/ERR9857000/ERR9857000.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/000/ERR9857000/ERR9857000.fastq.gz 1692173337 1c34261ea514a0d35c48f8d18f582b28 47738215 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9857000/3478.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9857000/3478.bam.bai 093ba52f5d885beb652843d3ecc16a25;9886fb29d6c5f27d7eef9d04ba2d0f54 +R3481 half ds n/a ERR9856995 PRJEB53564 SAMEA110145261 R3481 ERS12244073 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R3481 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/005/ERR9856995/ERR9856995.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/005/ERR9856995/ERR9856995.fastq.gz 1430103614 7de1218b2c9646df7c9983c4ff3ab4d0 39034736 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856995/3481.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856995/3481.bam.bai d3e7eb1f433dde98c7606d5cba64da4e;5aec0e0db0e55bc88d58e605c928c239 +R3482 half ds n/a ERR9856978 PRJEB53564 SAMEA110145262 R3482 ERS12244074 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R3482 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/008/ERR9856978/ERR9856978.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/008/ERR9856978/ERR9856978.fastq.gz 1934013696 f10df90bb7e3a1d5b4e0930a71799808 52483517 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856978/3482.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856978/3482.bam.bai d5ae318114333d0d7315ecb38138a319;a171b19d177fda112d59a341dccf0ba9 +R3542 half ds n/a ERR9856837 PRJEB53564 SAMEA110145263 R3542 ERS12244075 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R3542 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/007/ERR9856837/ERR9856837.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/007/ERR9856837/ERR9856837.fastq.gz 1399911429 929889be7367f6839dcc2bc5147effdd 40619815 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856837/3542.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856837/3542.bam.bai 12c2cc43d462b59e35f790c7707064f9;c023b23379f7eaf665a2515d34b81462 +R3543 half ds n/a ERR9856902 PRJEB53564 SAMEA110145264 R3543 ERS12244076 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R3543 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/002/ERR9856902/ERR9856902.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/002/ERR9856902/ERR9856902.fastq.gz 1502971143 ab94b86b2544a61130d11cce87dde1c0 45208465 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856902/3543.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856902/3543.bam.bai e100bb0a48ced52258c2b5954cefbc00;1199578508229360edcd621521f2d194 +R3544 half ds n/a ERR9856920 PRJEB53564 SAMEA110145265 R3544 ERS12244077 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R3544 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/000/ERR9856920/ERR9856920.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/000/ERR9856920/ERR9856920.fastq.gz 1496138759 779874b842c3776ee1b6ea7b92d7b0f5 43613366 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856920/3544.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856920/3544.bam.bai b81ad97b30938d8c499490b86989ff1d;5404b20faf5179a61f3c9e19481ccbd7 +R3545 half ds n/a ERR9856852 PRJEB53564 SAMEA110145266 R3545 ERS12244078 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R3545 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/002/ERR9856852/ERR9856852.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/002/ERR9856852/ERR9856852.fastq.gz 1337655262 f5cc32721cd0418a37c52c450edcc7c1 38458504 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856852/3545.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856852/3545.bam.bai 7473b8fcfd1c92f6f792d4bfea531f2e;419af7efae27a24de31104e0a3f82d53 +R3547 half ds n/a ERR9856840 PRJEB53564 SAMEA110145267 R3547 ERS12244079 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R3547 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/000/ERR9856840/ERR9856840.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/000/ERR9856840/ERR9856840.fastq.gz 1467818866 8be45603fef1f9632d814c4299658b02 46478157 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856840/3547.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856840/3547.bam.bai 16b5452c5d3133fb8e657524d2e9e0eb;c6d89c0a86abdcd0fca5ede220dd36a5 +R3655 half ds n/a ERR9856965 PRJEB53564 SAMEA110145268 R3655 ERS12244080 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R3655 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/005/ERR9856965/ERR9856965.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/005/ERR9856965/ERR9856965.fastq.gz 965846055 542a89901376c68602e9ecf90569e255 27090694 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856965/3655.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856965/3655.bam.bai 255967b846984cc5cdc4fbf5406941de;e1486fa9e5647d9c595933af848d56cd +R3656 half ds n/a ERR9856904 PRJEB53564 SAMEA110145269 R3656 ERS12244081 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R3656 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/004/ERR9856904/ERR9856904.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/004/ERR9856904/ERR9856904.fastq.gz 1115908345 d368cd3d6cba86622051d4018f002e69 31117759 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856904/3656.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856904/3656.bam.bai 805c1a1158ff607efc36b2082ff97be4;fc63ade3e00cf18ed48ebbc7326e6892 +R3657 half ds n/a ERR9856849 PRJEB53564 SAMEA110145270 R3657 ERS12244082 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R3657 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/009/ERR9856849/ERR9856849.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/009/ERR9856849/ERR9856849.fastq.gz 960958570 bc7a19f9ffcc08b2b97d91ddcde3220a 26434161 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856849/3657.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856849/3657.bam.bai dd5078bfe736557fcf36eafe9c6ac377;e046e1ed24cfbf6a0e8bb2e0f0c2443b +R3659 half ds n/a ERR9856821 PRJEB53564 SAMEA110145271 R3659 ERS12244083 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R3659 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/001/ERR9856821/ERR9856821.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/001/ERR9856821/ERR9856821.fastq.gz 932550247 b0ac19217a25d21f5614eabd6ddc6257 25800872 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856821/3659.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856821/3659.bam.bai c92b0b73e1681e734144c8a7a5c5f153;23466afef6fe2b9e8192b8167e92d055 +R3660 half ds n/a ERR9856959 PRJEB53564 SAMEA110145272 R3660 ERS12244084 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R3660 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/009/ERR9856959/ERR9856959.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/009/ERR9856959/ERR9856959.fastq.gz 1097846280 9f1f48b8f58a2db9bdc13537ffe46c97 32426363 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856959/3660.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856959/3660.bam.bai 2f91b4245e4334df71f03ce30a85676e;032986dbc2651c51367d1a26f584fa23 +R3662 half ds n/a ERR9856866 PRJEB53564 SAMEA110145273 R3662 ERS12244085 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R3662 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/006/ERR9856866/ERR9856866.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/006/ERR9856866/ERR9856866.fastq.gz 1094291982 0ff875d7d5d7a39064d1618730423bff 30843354 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856866/3662.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856866/3662.bam.bai 2da1a26e4785e282689bd9afd239c25f;03ca958598f7489e51648545b30abb40 +R3663 half ds n/a ERR9856825 PRJEB53564 SAMEA110145274 R3663 ERS12244086 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R3663 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/005/ERR9856825/ERR9856825.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/005/ERR9856825/ERR9856825.fastq.gz 861605380 8ce25d6fe7c43b519d9f436e2c49c052 23553915 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856825/3663.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856825/3663.bam.bai 00712869380d99767b149890d87b44c1;98fb68a58498af7edd96dfd4296b9469 +R3664 half ds n/a ERR9856882 PRJEB53564 SAMEA110145275 R3664 ERS12244087 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R3664 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/002/ERR9856882/ERR9856882.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/002/ERR9856882/ERR9856882.fastq.gz 1285894164 2458e6418ad1b33d9ebe0a98483a3cd4 37407384 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856882/3664.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856882/3664.bam.bai 2d7a7e0a3a2ab7967f0a087cce411edd;bb4b992e42d0c309149fc4c1336204cf +R3665 half ds n/a ERR9856875 PRJEB53564 SAMEA110145276 R3665 ERS12244088 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R3665 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/005/ERR9856875/ERR9856875.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/005/ERR9856875/ERR9856875.fastq.gz 825534559 683c7a910b9f60ad6ef45f1b79b3d530 22992184 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856875/3665.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856875/3665.bam.bai 4faa3f05ccdd7ad768177c414027e231;f172f74474514ab530c251751cdb501d +R3670 half ds n/a ERR9856823 PRJEB53564 SAMEA110145277 R3670 ERS12244089 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R3670 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/003/ERR9856823/ERR9856823.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/003/ERR9856823/ERR9856823.fastq.gz 813814485 e18dfe580ae453ad91f890d6ce50da47 21853307 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856823/3670.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856823/3670.bam.bai 37a1c2c3055ed872a3ee6d333a58139d;90f5b7c8a9f2a0a4bc8ff911778c68ac +R3685 half ds n/a ERR9856864 PRJEB53564 SAMEA110145278 R3685 ERS12244090 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R3685 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/004/ERR9856864/ERR9856864.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/004/ERR9856864/ERR9856864.fastq.gz 1367126488 effa769f95674f5227dde1deccd25919 35856604 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856864/3685.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856864/3685.bam.bai 34da0f5b02e74c72f9f5167f160a4b93;e547a58a95d8756d248db9a26a95f847 +R3742 half ds n/a ERR9856873 PRJEB53564 SAMEA110145279 R3742 ERS12244091 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R3742 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/003/ERR9856873/ERR9856873.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/003/ERR9856873/ERR9856873.fastq.gz 1074535033 02a747ddb1632a4699fbf85f836acffd 29580057 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856873/3742.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856873/3742.bam.bai 598844c207291c0b585f9a22332e4880;eb3b4a7fa3c314830218569d5fc3a83c +R3743 half ds n/a ERR9856890 PRJEB53564 SAMEA110145280 R3743 ERS12244092 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R3743 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/000/ERR9856890/ERR9856890.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/000/ERR9856890/ERR9856890.fastq.gz 1349577297 59e162a64e6b43f2324b32f9939c6515 38808071 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856890/3743.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856890/3743.bam.bai e39aa61a904e59d26318654e6465e450;2bb1491058af6edfee4e1251d486f4c3 +R3744 half ds n/a ERR9856815 PRJEB53564 SAMEA110145281 R3744 ERS12244093 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R3744 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/005/ERR9856815/ERR9856815.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/005/ERR9856815/ERR9856815.fastq.gz 1121059388 1fb7cc6265e80dd4d4bff7e68d8ce1b6 31763595 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856815/3744.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856815/3744.bam.bai 3dd8f4590b62a5d189dc2e43d385f1f2;12075788cda9e5cbe969ae448410ff65 +R3745 half ds n/a ERR9856830 PRJEB53564 SAMEA110145282 R3745 ERS12244094 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R3745 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/000/ERR9856830/ERR9856830.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/000/ERR9856830/ERR9856830.fastq.gz 1426586764 45c53683059fa77170dc2b9c0a30d41e 36646769 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856830/3745.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856830/3745.bam.bai f94b2642297c4560de788e1273dfc285;0db2c5e11044ffe81df65d3b37b760af +R3746 half ds n/a ERR9856877 PRJEB53564 SAMEA110145283 R3746 ERS12244095 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R3746 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/007/ERR9856877/ERR9856877.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/007/ERR9856877/ERR9856877.fastq.gz 1771249342 da224a3d9b0ccb376e62291cab627c4e 50682248 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856877/3746.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856877/3746.bam.bai 0d7a0b2ef11c492ab1662af21fdba5cc;9e09331b7bc3fc235be6d01b901867af +R3747 half ds n/a ERR9856923 PRJEB53564 SAMEA110145284 R3747 ERS12244096 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R3747 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/003/ERR9856923/ERR9856923.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/003/ERR9856923/ERR9856923.fastq.gz 1788680707 3fc77c3224b6a02b0c3fd124f2b18ec0 48985395 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856923/3747.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856923/3747.bam.bai ab4ce0377065d76e418d1cde539eb7ce;a83786ec8597c3c951ca09b2bfe00088 +R3906 half ds n/a ERR9856829 PRJEB53564 SAMEA110145285 R3906 ERS12244097 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R3906 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/009/ERR9856829/ERR9856829.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/009/ERR9856829/ERR9856829.fastq.gz 988361240 1173eacf382b24ad8fad6c376cfbb944 27008169 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856829/3906.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856829/3906.bam.bai 26adbc54b660fda79e9ada4ddbaa0759;29a75d61ee7712a83292f48dcc3c595d +R3918 half ds n/a ERR9856984 PRJEB53564 SAMEA110145286 R3918 ERS12244098 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R3918 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/004/ERR9856984/ERR9856984.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/004/ERR9856984/ERR9856984.fastq.gz 1024999913 e94640f75558de24b6dedcb651395561 28867293 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856984/3918.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856984/3918.bam.bai 6e3376e516cf1bb87afb1946b4ecbd6f;28ab66951883387209b246e2b958b04b +R3931 half ds n/a ERR9856994 PRJEB53564 SAMEA110145287 R3931 ERS12244099 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R3931 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/004/ERR9856994/ERR9856994.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/004/ERR9856994/ERR9856994.fastq.gz 1711666451 30c9be7b8a046ad5c1dc1d21a7e816f2 50757498 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856994/3931.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856994/3931.bam.bai 32ca44d95d42b518c843740e9c76fc72;34e809e7fd92ba0ee3a446cb5f6cfc7f +R6681 half ds n/a ERR9856846 PRJEB53564 SAMEA110145288 R6681 ERS12244100 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R6681 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/006/ERR9856846/ERR9856846.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/006/ERR9856846/ERR9856846.fastq.gz 1776090067 86d340a59d824d934163abeee9b9f743 50196071 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856846/6681.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856846/6681.bam.bai 42649e5385dcdddd553a13fd0868c939;94e0b4c8b2b115811c207835d861f4fd +R6688 half ds n/a ERR9856955 PRJEB53564 SAMEA110145289 R6688 ERS12244101 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R6688 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/005/ERR9856955/ERR9856955.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/005/ERR9856955/ERR9856955.fastq.gz 1259321832 5b5c7b14b2ddf37d859e0c97ed3ba78c 35367536 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856955/6688.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856955/6688.bam.bai da6dca2e583de6948858db4ae629dc0b;51147ab4ec2e459b5058ca2004b14acc +R6693 half ds n/a ERR9856968 PRJEB53564 SAMEA110145290 R6693 ERS12244102 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R6693 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/008/ERR9856968/ERR9856968.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/008/ERR9856968/ERR9856968.fastq.gz 913996020 82cf8a3b18f876185d0fbf5ffebfdbec 28510525 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856968/6693.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856968/6693.bam.bai 99822f2dcc013d3b9a5ea1c97525839a;3413f0c0af649e8a043bf4c4cae8e4bc +R6701 half ds n/a ERR9856896 PRJEB53564 SAMEA110145291 R6701 ERS12244103 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R6701 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/006/ERR9856896/ERR9856896.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/006/ERR9856896/ERR9856896.fastq.gz 1536063284 991cc82d2bec16c11c64e1f2d0c03d6d 43650674 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856896/6701.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856896/6701.bam.bai 8216fdf11c434941dcee8265c874c7e1;d59601b1ddbe86c9324f4ed7c5227497 +R6730 half ds n/a ERR9856987 PRJEB53564 SAMEA110145292 R6730 ERS12244104 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R6730 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/007/ERR9856987/ERR9856987.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/007/ERR9856987/ERR9856987.fastq.gz 1811956572 7617b53605c7592e83709d1c62c83cc8 48998061 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856987/6730.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856987/6730.bam.bai 77d1837381c360c51f0d2249cb0b200f;d96069d9be1c1f2f6d3cbbc8f37e4a9d +R6737 half ds n/a ERR9856887 PRJEB53564 SAMEA110145293 R6737 ERS12244105 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R6737 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/007/ERR9856887/ERR9856887.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/007/ERR9856887/ERR9856887.fastq.gz 1662421202 8084a0c596e216edf4e1a69849288b3c 43605902 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856887/6737.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856887/6737.bam.bai 322eff9277b547e4372305a9b3735f4f;a7afdbfc7ea62af7bb36b2a707d10eae +R6750 half ds n/a ERR9856905 PRJEB53564 SAMEA110145294 R6750 ERS12244106 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R6750 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/005/ERR9856905/ERR9856905.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/005/ERR9856905/ERR9856905.fastq.gz 1617234364 a1d9088c4f11fdd3efcb3835d046e821 47209004 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856905/6750.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856905/6750.bam.bai ceb3c4a4240e77661f6ddd22890c72a9;6056e1dd223ff6b5aa205e8ca7bfbb99 +R6756 half ds n/a ERR9856857 PRJEB53564 SAMEA110145295 R6756 ERS12244107 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R6756 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/007/ERR9856857/ERR9856857.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/007/ERR9856857/ERR9856857.fastq.gz 1179881693 57ca6efd40dce8eef93bf914a74f73a3 34691086 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856857/6756.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856857/6756.bam.bai e410e025773978f10ae920c373416469;dc75e0449d082f85737d62a7e15ec713 +R6759 half ds n/a ERR9856879 PRJEB53564 SAMEA110145296 R6759 ERS12244108 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R6759 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/009/ERR9856879/ERR9856879.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/009/ERR9856879/ERR9856879.fastq.gz 1504805396 9757d152406478a43bc3ec4f2138a7ec 44343902 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856879/6759.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856879/6759.bam.bai 38599c7862f128fd3e502414b02c8bef;22986119720a355f061e0f7ec5a368bb +R6764 half ds n/a ERR9856909 PRJEB53564 SAMEA110145297 R6764 ERS12244109 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R6764 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/009/ERR9856909/ERR9856909.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/009/ERR9856909/ERR9856909.fastq.gz 1597688683 417fbbfd71718c6f1656a73f42f1dd48 48168916 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856909/6764.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856909/6764.bam.bai 51f009a126453120c7a473f6229c4f3a;5677409afae08717fb8699c5310344a8 +R6769 half ds n/a ERR9856941 PRJEB53564 SAMEA110145298 R6769 ERS12244110 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R6769 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/001/ERR9856941/ERR9856941.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/001/ERR9856941/ERR9856941.fastq.gz 1468679596 b701f278518f5cfd8ff989ede83038d4 40175645 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856941/6769.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856941/6769.bam.bai 827dd228bbda42fd12a1fb68f7df0209;d3df391dc2894ebe02c19d15f8932cbf +R9662 half ds n/a ERR9856938 PRJEB53564 SAMEA110145299 R9662 ERS12244111 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R9662 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/008/ERR9856938/ERR9856938.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/008/ERR9856938/ERR9856938.fastq.gz 999417558 95ab8d621b8bb95c0a63500c98e3d7bf 26814967 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856938/9662.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856938/9662.bam.bai 7ef7c23a2c6f0f39c429c460dd615421;9a0313254641a25418c371b6dc9b1b6f +R9669 half ds n/a ERR9856931 PRJEB53564 SAMEA110145300 R9669 ERS12244112 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R9669 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/001/ERR9856931/ERR9856931.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/001/ERR9856931/ERR9856931.fastq.gz 996387703 445aa9084ebb579d7bc1d37b716f674d 27409430 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856931/9669.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856931/9669.bam.bai 5566055b6c70113c1f381cb3e97e9838;0272b93da8d0d12e161ef113ce1f043a +R9673 half ds n/a ERR9856973 PRJEB53564 SAMEA110145301 R9673 ERS12244113 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R9673 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/003/ERR9856973/ERR9856973.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/003/ERR9856973/ERR9856973.fastq.gz 1682727747 8f1b2f2856ca42ad1ecb4908e12b15b1 47036809 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856973/9673.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856973/9673.bam.bai 377cde20ab5c3297ed5f696d2174bf20;801731ffe9e3cfc9513cf7326edb47d4 +R9674 half ds n/a ERR9856912 PRJEB53564 SAMEA110145302 R9674 ERS12244114 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R9674 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/002/ERR9856912/ERR9856912.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/002/ERR9856912/ERR9856912.fastq.gz 1711848753 7c9e1eb1f474d775241b082203f31de7 48719676 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856912/9674.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856912/9674.bam.bai caad25e64abf1d70c7083dafefc2568e;b7b44f8e50b7c7a8b0e6649b6e4dbc92 +R9818 half ds n/a ERR9856910 PRJEB53564 SAMEA110145303 R9818 ERS12244115 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R9818 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/000/ERR9856910/ERR9856910.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/000/ERR9856910/ERR9856910.fastq.gz 1373573083 a327a612eba03dfdac0d7d9239073b34 42792607 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856910/9818.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856910/9818.bam.bai 127a7a73eb3ec7d585eb51504b108fbf;1a3555486a0c94aec719ee240aa8ec0b +R9823 half ds n/a ERR9856950 PRJEB53564 SAMEA110145304 R9823 ERS12244116 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R9823 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/000/ERR9856950/ERR9856950.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/000/ERR9856950/ERR9856950.fastq.gz 1761065363 4052a8333cfd5d1f5c03833eb8a183b1 56846061 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856950/9823.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856950/9823.bam.bai d1c23a5484ef857e0fa4e62aaa71e62f;0c4206806c28683cf7e75d2717ff6603 +R9918 half ds n/a ERR9856831 PRJEB53564 SAMEA110145305 R9918 ERS12244117 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R9918 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/001/ERR9856831/ERR9856831.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/001/ERR9856831/ERR9856831.fastq.gz 1304016168 90b26aefec65636397857d2704ff9392 37230765 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856831/9918.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856831/9918.bam.bai 3f42429643104c3dc9fd316a46d27e53;d7213988a3c07304e575af27524bc653 +R9919 half ds n/a ERR9856884 PRJEB53564 SAMEA110145306 R9919 ERS12244118 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R9919 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/004/ERR9856884/ERR9856884.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/004/ERR9856884/ERR9856884.fastq.gz 1721159752 642bf73d8a08c430cd50acb42611596f 48936176 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856884/9919.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856884/9919.bam.bai 0d03700c1cbfd61023eaed77e6ced999;1fef9ec32970c2ceee9fabd646a2b565 +R9920 half ds n/a ERR9856996 PRJEB53564 SAMEA110145307 R9920 ERS12244119 2022-06-20 2022-06-20 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA R9920 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR985/006/ERR9856996/ERR9856996.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR985/006/ERR9856996/ERR9856996.fastq.gz 1181476856 f5e2261e4d708844406ce78e3d2007e5 31181775 ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856996/9920.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR985/ERR9856996/9920.bam.bai e05812db281177f0b5c38a6f9ea1d507;543c19bb072ddd45598a9ad8482cab45 diff --git a/packages/2024_Antonio_HighMobility/2024_Antonio_HighMobility.tsv b/packages/2024_Antonio_HighMobility/2024_Antonio_HighMobility.tsv new file mode 100644 index 0000000..adc6798 --- /dev/null +++ b/packages/2024_Antonio_HighMobility/2024_Antonio_HighMobility.tsv @@ -0,0 +1,193 @@ +Sample_Name Library_ID Lane Colour_Chemistry SeqType Organism Strandedness UDG_Treatment R1 R2 BAM R1_target_file R2_target_file BAM_target +R10467 R10467_R10467 1 4 SE Homo sapiens (modern human) double half /R10467_R10467_L1_R1.fastq.gz NA NA ERR9856917.fastq.gz NA NA +R10469 R10469_R10469 1 4 SE Homo sapiens (modern human) double half /R10469_R10469_L1_R1.fastq.gz NA NA ERR9856892.fastq.gz NA NA +R10471 R10471_R10471 1 4 SE Homo sapiens (modern human) double half /R10471_R10471_L1_R1.fastq.gz NA NA ERR9856961.fastq.gz NA NA +R10473 R10473_R10473 1 4 SE Homo sapiens (modern human) double half /R10473_R10473_L1_R1.fastq.gz NA NA ERR9856997.fastq.gz NA NA +R10474 R10474_R10474 1 4 SE Homo sapiens (modern human) double half /R10474_R10474_L1_R1.fastq.gz NA NA ERR9856817.fastq.gz NA NA +R10477 R10477_R10477 1 4 SE Homo sapiens (modern human) double half /R10477_R10477_L1_R1.fastq.gz NA NA ERR9856850.fastq.gz NA NA +R10478 R10478_R10478 1 4 SE Homo sapiens (modern human) double half /R10478_R10478_L1_R1.fastq.gz NA NA ERR9856951.fastq.gz NA NA +R10487 R10487_R10487 1 4 SE Homo sapiens (modern human) double half /R10487_R10487_L1_R1.fastq.gz NA NA ERR9856916.fastq.gz NA NA +R10488 R10488_R10488 1 4 SE Homo sapiens (modern human) double half /R10488_R10488_L1_R1.fastq.gz NA NA ERR9856921.fastq.gz NA NA +R10491 R10491_R10491 1 4 SE Homo sapiens (modern human) double half /R10491_R10491_L1_R1.fastq.gz NA NA ERR9856888.fastq.gz NA NA +R10494 R10494_R10494 1 4 SE Homo sapiens (modern human) double half /R10494_R10494_L1_R1.fastq.gz NA NA ERR9856922.fastq.gz NA NA +R10496 R10496_R10496 1 4 SE Homo sapiens (modern human) double half /R10496_R10496_L1_R1.fastq.gz NA NA ERR9856861.fastq.gz NA NA +R10499 R10499_R10499 1 4 SE Homo sapiens (modern human) double half /R10499_R10499_L1_R1.fastq.gz NA NA ERR9856860.fastq.gz NA NA +R10500 R10500_R10500 1 4 SE Homo sapiens (modern human) double half /R10500_R10500_L1_R1.fastq.gz NA NA ERR9856856.fastq.gz NA NA +R10501 R10501_R10501 1 4 SE Homo sapiens (modern human) double half /R10501_R10501_L1_R1.fastq.gz NA NA ERR9856947.fastq.gz NA NA +R10502 R10502_R10502 1 4 SE Homo sapiens (modern human) double half /R10502_R10502_L1_R1.fastq.gz NA NA ERR9856885.fastq.gz NA NA +R10503 R10503_R10503 1 4 SE Homo sapiens (modern human) double half /R10503_R10503_L1_R1.fastq.gz NA NA ERR9856838.fastq.gz NA NA +R10506 R10506_R10506 1 4 SE Homo sapiens (modern human) double half /R10506_R10506_L1_R1.fastq.gz NA NA ERR9856932.fastq.gz NA NA +R10507 R10507_R10507 1 4 SE Homo sapiens (modern human) double half /R10507_R10507_L1_R1.fastq.gz NA NA ERR9856874.fastq.gz NA NA +R10508 R10508_R10508 1 4 SE Homo sapiens (modern human) double half /R10508_R10508_L1_R1.fastq.gz NA NA ERR9856966.fastq.gz NA NA +R10618 R10618_R10618 1 4 SE Homo sapiens (modern human) double half /R10618_R10618_L1_R1.fastq.gz NA NA ERR9856901.fastq.gz NA NA +R10620 R10620_R10620 1 4 SE Homo sapiens (modern human) double half /R10620_R10620_L1_R1.fastq.gz NA NA ERR9856828.fastq.gz NA NA +R10625 R10625_R10625 1 4 SE Homo sapiens (modern human) double half /R10625_R10625_L1_R1.fastq.gz NA NA ERR9856845.fastq.gz NA NA +R10626 R10626_R10626 1 4 SE Homo sapiens (modern human) double half /R10626_R10626_L1_R1.fastq.gz NA NA ERR9856989.fastq.gz NA NA +R10631 R10631_R10631 1 4 SE Homo sapiens (modern human) double half /R10631_R10631_L1_R1.fastq.gz NA NA ERR9856868.fastq.gz NA NA +R10633 R10633_R10633 1 4 SE Homo sapiens (modern human) double half /R10633_R10633_L1_R1.fastq.gz NA NA ERR9856930.fastq.gz NA NA +R10634 R10634_R10634 1 4 SE Homo sapiens (modern human) double half /R10634_R10634_L1_R1.fastq.gz NA NA ERR9856839.fastq.gz NA NA +R10636 R10636_R10636 1 4 SE Homo sapiens (modern human) double half /R10636_R10636_L1_R1.fastq.gz NA NA ERR9856992.fastq.gz NA NA +R10654 R10654_R10654 1 4 SE Homo sapiens (modern human) double half /R10654_R10654_L1_R1.fastq.gz NA NA ERR9856918.fastq.gz NA NA +R10656 R10656_R10656 1 4 SE Homo sapiens (modern human) double half /R10656_R10656_L1_R1.fastq.gz NA NA ERR9856810.fastq.gz NA NA +R10657 R10657_R10657 1 4 SE Homo sapiens (modern human) double half /R10657_R10657_L1_R1.fastq.gz NA NA ERR9856911.fastq.gz NA NA +R10658 R10658_R10658 1 4 SE Homo sapiens (modern human) double half /R10658_R10658_L1_R1.fastq.gz NA NA ERR9856936.fastq.gz NA NA +R10659 R10659_R10659 1 4 SE Homo sapiens (modern human) double half /R10659_R10659_L1_R1.fastq.gz NA NA ERR9856859.fastq.gz NA NA +R10660 R10660_R10660 1 4 SE Homo sapiens (modern human) double half /R10660_R10660_L1_R1.fastq.gz NA NA ERR9856876.fastq.gz NA NA +R10665 R10665_R10665 1 4 SE Homo sapiens (modern human) double half /R10665_R10665_L1_R1.fastq.gz NA NA ERR9856980.fastq.gz NA NA +R10666 R10666_R10666 1 4 SE Homo sapiens (modern human) double half /R10666_R10666_L1_R1.fastq.gz NA NA ERR9856833.fastq.gz NA NA +R10667 R10667_R10667 1 4 SE Homo sapiens (modern human) double half /R10667_R10667_L1_R1.fastq.gz NA NA ERR9856865.fastq.gz NA NA +R10668 R10668_R10668 1 4 SE Homo sapiens (modern human) double half /R10668_R10668_L1_R1.fastq.gz NA NA ERR9856964.fastq.gz NA NA +R10670 R10670_R10670 1 4 SE Homo sapiens (modern human) double half /R10670_R10670_L1_R1.fastq.gz NA NA ERR9856928.fastq.gz NA NA +R10760 R10760_R10760 1 4 SE Homo sapiens (modern human) double half /R10760_R10760_L1_R1.fastq.gz NA NA ERR9856906.fastq.gz NA NA +R10766 R10766_R10766 1 4 SE Homo sapiens (modern human) double half /R10766_R10766_L1_R1.fastq.gz NA NA ERR9856967.fastq.gz NA NA +R10770 R10770_R10770 1 4 SE Homo sapiens (modern human) double half /R10770_R10770_L1_R1.fastq.gz NA NA ERR9856894.fastq.gz NA NA +R10830 R10830_R10830 1 4 SE Homo sapiens (modern human) double half /R10830_R10830_L1_R1.fastq.gz NA NA ERR9856812.fastq.gz NA NA +R10832 R10832_R10832 1 4 SE Homo sapiens (modern human) double half /R10832_R10832_L1_R1.fastq.gz NA NA ERR9856891.fastq.gz NA NA +R10836 R10836_R10836 1 4 SE Homo sapiens (modern human) double half /R10836_R10836_L1_R1.fastq.gz NA NA ERR9856881.fastq.gz NA NA +R10838 R10838_R10838 1 4 SE Homo sapiens (modern human) double half /R10838_R10838_L1_R1.fastq.gz NA NA ERR9856819.fastq.gz NA NA +R10840 R10840_R10840 1 4 SE Homo sapiens (modern human) double half /R10840_R10840_L1_R1.fastq.gz NA NA ERR9856999.fastq.gz NA NA +R11109 R11109_R11109 1 4 SE Homo sapiens (modern human) double half /R11109_R11109_L1_R1.fastq.gz NA NA ERR9856933.fastq.gz NA NA +R11111 R11111_R11111 1 4 SE Homo sapiens (modern human) double half /R11111_R11111_L1_R1.fastq.gz NA NA ERR9856960.fastq.gz NA NA +R11112 R11112_R11112 1 4 SE Homo sapiens (modern human) double half /R11112_R11112_L1_R1.fastq.gz NA NA ERR9856813.fastq.gz NA NA +R11113 R11113_R11113 1 4 SE Homo sapiens (modern human) double half /R11113_R11113_L1_R1.fastq.gz NA NA ERR9856969.fastq.gz NA NA +R11115 R11115_R11115 1 4 SE Homo sapiens (modern human) double half /R11115_R11115_L1_R1.fastq.gz NA NA ERR9856914.fastq.gz NA NA +R11116 R11116_R11116 1 4 SE Homo sapiens (modern human) double half /R11116_R11116_L1_R1.fastq.gz NA NA ERR9856827.fastq.gz NA NA +R11117 R11117_R11117 1 4 SE Homo sapiens (modern human) double half /R11117_R11117_L1_R1.fastq.gz NA NA ERR9856971.fastq.gz NA NA +R11118 R11118_R11118 1 4 SE Homo sapiens (modern human) double half /R11118_R11118_L1_R1.fastq.gz NA NA ERR9856935.fastq.gz NA NA +R11119 R11119_R11119 1 4 SE Homo sapiens (modern human) double half /R11119_R11119_L1_R1.fastq.gz NA NA ERR9856958.fastq.gz NA NA +R11120 R11120_R11120 1 4 SE Homo sapiens (modern human) double half /R11120_R11120_L1_R1.fastq.gz NA NA ERR9856855.fastq.gz NA NA +R11121 R11121_R11121 1 4 SE Homo sapiens (modern human) double half /R11121_R11121_L1_R1.fastq.gz NA NA ERR9856975.fastq.gz NA NA +R11391 R11391_R11391 1 4 SE Homo sapiens (modern human) double half /R11391_R11391_L1_R1.fastq.gz NA NA ERR9856824.fastq.gz NA NA +R11535 R11535_R11535 1 4 SE Homo sapiens (modern human) double half /R11535_R11535_L1_R1.fastq.gz NA NA ERR9856851.fastq.gz NA NA +R11536 R11536_R11536 1 4 SE Homo sapiens (modern human) double half /R11536_R11536_L1_R1.fastq.gz NA NA ERR9856979.fastq.gz NA NA +R11538 R11538_R11538 1 4 SE Homo sapiens (modern human) double half /R11538_R11538_L1_R1.fastq.gz NA NA ERR9856897.fastq.gz NA NA +R11540 R11540_R11540 1 4 SE Homo sapiens (modern human) double half /R11540_R11540_L1_R1.fastq.gz NA NA ERR9856848.fastq.gz NA NA +R11541 R11541_R11541 1 4 SE Homo sapiens (modern human) double half /R11541_R11541_L1_R1.fastq.gz NA NA ERR9856943.fastq.gz NA NA +R11542 R11542_R11542 1 4 SE Homo sapiens (modern human) double half /R11542_R11542_L1_R1.fastq.gz NA NA ERR9856977.fastq.gz NA NA +R11543 R11543_R11543 1 4 SE Homo sapiens (modern human) double half /R11543_R11543_L1_R1.fastq.gz NA NA ERR9856939.fastq.gz NA NA +R11544 R11544_R11544 1 4 SE Homo sapiens (modern human) double half /R11544_R11544_L1_R1.fastq.gz NA NA ERR9856944.fastq.gz NA NA +R11545 R11545_R11545 1 4 SE Homo sapiens (modern human) double half /R11545_R11545_L1_R1.fastq.gz NA NA ERR9856963.fastq.gz NA NA +R11546 R11546_R11546 1 4 SE Homo sapiens (modern human) double half /R11546_R11546_L1_R1.fastq.gz NA NA ERR9856976.fastq.gz NA NA +R11550 R11550_R11550 1 4 SE Homo sapiens (modern human) double half /R11550_R11550_L1_R1.fastq.gz NA NA ERR9856871.fastq.gz NA NA +R11552 R11552_R11552 1 4 SE Homo sapiens (modern human) double half /R11552_R11552_L1_R1.fastq.gz NA NA ERR9856913.fastq.gz NA NA +R11553 R11553_R11553 1 4 SE Homo sapiens (modern human) double half /R11553_R11553_L1_R1.fastq.gz NA NA ERR9856990.fastq.gz NA NA +R11554 R11554_R11554 1 4 SE Homo sapiens (modern human) double half /R11554_R11554_L1_R1.fastq.gz NA NA ERR9856945.fastq.gz NA NA +R11555 R11555_R11555 1 4 SE Homo sapiens (modern human) double half /R11555_R11555_L1_R1.fastq.gz NA NA ERR9856925.fastq.gz NA NA +R11556 R11556_R11556 1 4 SE Homo sapiens (modern human) double half /R11556_R11556_L1_R1.fastq.gz NA NA ERR9856822.fastq.gz NA NA +R11557 R11557_R11557 1 4 SE Homo sapiens (modern human) double half /R11557_R11557_L1_R1.fastq.gz NA NA ERR9856869.fastq.gz NA NA +R11558 R11558_R11558 1 4 SE Homo sapiens (modern human) double half /R11558_R11558_L1_R1.fastq.gz NA NA ERR9856832.fastq.gz NA NA +R11559 R11559_R11559 1 4 SE Homo sapiens (modern human) double half /R11559_R11559_L1_R1.fastq.gz NA NA ERR9856900.fastq.gz NA NA +R11560 R11560_R11560 1 4 SE Homo sapiens (modern human) double half /R11560_R11560_L1_R1.fastq.gz NA NA ERR9856863.fastq.gz NA NA +R11561 R11561_R11561 1 4 SE Homo sapiens (modern human) double half /R11561_R11561_L1_R1.fastq.gz NA NA ERR9856934.fastq.gz NA NA +R11563 R11563_R11563 1 4 SE Homo sapiens (modern human) double half /R11563_R11563_L1_R1.fastq.gz NA NA ERR9856899.fastq.gz NA NA +R11651 R11651_R11651 1 4 SE Homo sapiens (modern human) double half /R11651_R11651_L1_R1.fastq.gz NA NA ERR9856929.fastq.gz NA NA +R11653 R11653_R11653 1 4 SE Homo sapiens (modern human) double half /R11653_R11653_L1_R1.fastq.gz NA NA ERR9856895.fastq.gz NA NA +R11655 R11655_R11655 1 4 SE Homo sapiens (modern human) double half /R11655_R11655_L1_R1.fastq.gz NA NA ERR9856843.fastq.gz NA NA +R11668 R11668_R11668 1 4 SE Homo sapiens (modern human) double half /R11668_R11668_L1_R1.fastq.gz NA NA ERR9856826.fastq.gz NA NA +R11675 R11675_R11675 1 4 SE Homo sapiens (modern human) double half /R11675_R11675_L1_R1.fastq.gz NA NA ERR9856878.fastq.gz NA NA +R11678 R11678_R11678 1 4 SE Homo sapiens (modern human) double half /R11678_R11678_L1_R1.fastq.gz NA NA ERR9856847.fastq.gz NA NA +R11713 R11713_R11713 1 4 SE Homo sapiens (modern human) double half /R11713_R11713_L1_R1.fastq.gz NA NA ERR9856991.fastq.gz NA NA +R11714 R11714_R11714 1 4 SE Homo sapiens (modern human) double half /R11714_R11714_L1_R1.fastq.gz NA NA ERR9856872.fastq.gz NA NA +R11828 R11828_R11828 1 4 SE Homo sapiens (modern human) double half /R11828_R11828_L1_R1.fastq.gz NA NA ERR9856952.fastq.gz NA NA +R11829 R11829_R11829 1 4 SE Homo sapiens (modern human) double half /R11829_R11829_L1_R1.fastq.gz NA NA ERR9856842.fastq.gz NA NA +R11832 R11832_R11832 1 4 SE Homo sapiens (modern human) double half /R11832_R11832_L1_R1.fastq.gz NA NA ERR9856834.fastq.gz NA NA +R11833 R11833_R11833 1 4 SE Homo sapiens (modern human) double half /R11833_R11833_L1_R1.fastq.gz NA NA ERR9856903.fastq.gz NA NA +R11834 R11834_R11834 1 4 SE Homo sapiens (modern human) double half /R11834_R11834_L1_R1.fastq.gz NA NA ERR9856956.fastq.gz NA NA +R11835 R11835_R11835 1 4 SE Homo sapiens (modern human) double half /R11835_R11835_L1_R1.fastq.gz NA NA ERR9856954.fastq.gz NA NA +R11836 R11836_R11836 1 4 SE Homo sapiens (modern human) double half /R11836_R11836_L1_R1.fastq.gz NA NA ERR9856883.fastq.gz NA NA +R11866 R11866_R11866 1 4 SE Homo sapiens (modern human) double half /R11866_R11866_L1_R1.fastq.gz NA NA ERR9856919.fastq.gz NA NA +R11867 R11867_R11867 1 4 SE Homo sapiens (modern human) double half /R11867_R11867_L1_R1.fastq.gz NA NA ERR9856867.fastq.gz NA NA +R11868 R11868_R11868 1 4 SE Homo sapiens (modern human) double half /R11868_R11868_L1_R1.fastq.gz NA NA ERR9856962.fastq.gz NA NA +R11872 R11872_R11872 1 4 SE Homo sapiens (modern human) double half /R11872_R11872_L1_R1.fastq.gz NA NA ERR9856880.fastq.gz NA NA +R11873 R11873_R11873 1 4 SE Homo sapiens (modern human) double half /R11873_R11873_L1_R1.fastq.gz NA NA ERR9856970.fastq.gz NA NA +R11875 R11875_R11875 1 4 SE Homo sapiens (modern human) double half /R11875_R11875_L1_R1.fastq.gz NA NA ERR9856853.fastq.gz NA NA +R11877 R11877_R11877 1 4 SE Homo sapiens (modern human) double half /R11877_R11877_L1_R1.fastq.gz NA NA ERR9856983.fastq.gz NA NA +R12229 R12229_R12229 1 4 SE Homo sapiens (modern human) double half /R12229_R12229_L1_R1.fastq.gz NA NA ERR9856972.fastq.gz NA NA +R1223 R1223_R1223 1 4 SE Homo sapiens (modern human) double half /R1223_R1223_L1_R1.fastq.gz NA NA ERR9856985.fastq.gz NA NA +R12233 R12233_R12233 1 4 SE Homo sapiens (modern human) double half /R12233_R12233_L1_R1.fastq.gz NA NA ERR9856908.fastq.gz NA NA +R12245 R12245_R12245 1 4 SE Homo sapiens (modern human) double half /R12245_R12245_L1_R1.fastq.gz NA NA ERR9856835.fastq.gz NA NA +R12246 R12246_R12246 1 4 SE Homo sapiens (modern human) double half /R12246_R12246_L1_R1.fastq.gz NA NA ERR9856940.fastq.gz NA NA +R1225 R1225_R1225 1 4 SE Homo sapiens (modern human) double half /R1225_R1225_L1_R1.fastq.gz NA NA ERR9856836.fastq.gz NA NA +R1291 R1291_R1291 1 4 SE Homo sapiens (modern human) double half /R1291_R1291_L1_R1.fastq.gz NA NA ERR9856993.fastq.gz NA NA +R1292 R1292_R1292 1 4 SE Homo sapiens (modern human) double half /R1292_R1292_L1_R1.fastq.gz NA NA ERR9856858.fastq.gz NA NA +R1294 R1294_R1294 1 4 SE Homo sapiens (modern human) double half /R1294_R1294_L1_R1.fastq.gz NA NA ERR9856957.fastq.gz NA NA +R1554 R1554_R1554 1 4 SE Homo sapiens (modern human) double half /R1554_R1554_L1_R1.fastq.gz NA NA ERR9856889.fastq.gz NA NA +R1555 R1555_R1555 1 4 SE Homo sapiens (modern human) double half /R1555_R1555_L1_R1.fastq.gz NA NA ERR9856927.fastq.gz NA NA +R1556 R1556_R1556 1 4 SE Homo sapiens (modern human) double half /R1556_R1556_L1_R1.fastq.gz NA NA ERR9856981.fastq.gz NA NA +R1557 R1557_R1557 1 4 SE Homo sapiens (modern human) double half /R1557_R1557_L1_R1.fastq.gz NA NA ERR9856949.fastq.gz NA NA +R1874 R1874_R1874 1 4 SE Homo sapiens (modern human) double half /R1874_R1874_L1_R1.fastq.gz NA NA ERR9856942.fastq.gz NA NA +R2040 R2040_R2040 1 4 SE Homo sapiens (modern human) double half /R2040_R2040_L1_R1.fastq.gz NA NA ERR9856870.fastq.gz NA NA +R2041 R2041_R2041 1 4 SE Homo sapiens (modern human) double half /R2041_R2041_L1_R1.fastq.gz NA NA ERR9856893.fastq.gz NA NA +R2042 R2042_R2042 1 4 SE Homo sapiens (modern human) double half /R2042_R2042_L1_R1.fastq.gz NA NA ERR9856988.fastq.gz NA NA +R2045 R2045_R2045 1 4 SE Homo sapiens (modern human) double half /R2045_R2045_L1_R1.fastq.gz NA NA ERR9856937.fastq.gz NA NA +R2050 R2050_R2050 1 4 SE Homo sapiens (modern human) double half /R2050_R2050_L1_R1.fastq.gz NA NA ERR9856946.fastq.gz NA NA +R2051 R2051_R2051 1 4 SE Homo sapiens (modern human) double half /R2051_R2051_L1_R1.fastq.gz NA NA ERR9856953.fastq.gz NA NA +R2053 R2053_R2053 1 4 SE Homo sapiens (modern human) double half /R2053_R2053_L1_R1.fastq.gz NA NA ERR9856948.fastq.gz NA NA +R2055 R2055_R2055 1 4 SE Homo sapiens (modern 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(modern human) double half /R2204_R2204_L1_R1.fastq.gz NA NA ERR9856886.fastq.gz NA NA +R2206 R2206_R2206 1 4 SE Homo sapiens (modern human) double half /R2206_R2206_L1_R1.fastq.gz NA NA ERR9856814.fastq.gz NA NA +R2207 R2207_R2207 1 4 SE Homo sapiens (modern human) double half /R2207_R2207_L1_R1.fastq.gz NA NA ERR9856841.fastq.gz NA NA +R2208 R2208_R2208 1 4 SE Homo sapiens (modern human) double half /R2208_R2208_L1_R1.fastq.gz NA NA ERR9857001.fastq.gz NA NA +R2209 R2209_R2209 1 4 SE Homo sapiens (modern human) double half /R2209_R2209_L1_R1.fastq.gz NA NA ERR9856998.fastq.gz NA NA +R2210 R2210_R2210 1 4 SE Homo sapiens (modern human) double half /R2210_R2210_L1_R1.fastq.gz NA NA ERR9856926.fastq.gz NA NA +R2211 R2211_R2211 1 4 SE Homo sapiens (modern human) double half /R2211_R2211_L1_R1.fastq.gz NA NA ERR9856898.fastq.gz NA NA +R3359 R3359_R3359 1 4 SE Homo sapiens (modern human) double half /R3359_R3359_L1_R1.fastq.gz NA NA ERR9856820.fastq.gz NA NA +R3361 R3361_R3361 1 4 SE Homo 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SE Homo sapiens (modern human) double half /R3543_R3543_L1_R1.fastq.gz NA NA ERR9856902.fastq.gz NA NA +R3544 R3544_R3544 1 4 SE Homo sapiens (modern human) double half /R3544_R3544_L1_R1.fastq.gz NA NA ERR9856920.fastq.gz NA NA +R3545 R3545_R3545 1 4 SE Homo sapiens (modern human) double half /R3545_R3545_L1_R1.fastq.gz NA NA ERR9856852.fastq.gz NA NA +R3547 R3547_R3547 1 4 SE Homo sapiens (modern human) double half /R3547_R3547_L1_R1.fastq.gz NA NA ERR9856840.fastq.gz NA NA +R3655 R3655_R3655 1 4 SE Homo sapiens (modern human) double half /R3655_R3655_L1_R1.fastq.gz NA NA ERR9856965.fastq.gz NA NA +R3656 R3656_R3656 1 4 SE Homo sapiens (modern human) double half /R3656_R3656_L1_R1.fastq.gz NA NA ERR9856904.fastq.gz NA NA +R3657 R3657_R3657 1 4 SE Homo sapiens (modern human) double half /R3657_R3657_L1_R1.fastq.gz NA NA ERR9856849.fastq.gz NA NA +R3659 R3659_R3659 1 4 SE Homo sapiens (modern human) double half /R3659_R3659_L1_R1.fastq.gz NA NA ERR9856821.fastq.gz NA NA +R3660 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version of the TSV_patch template used +VERSION='0.2.1dev' + +## This script is applied to the eager input TSV file locally to edit the dummy +## path to the fastQ files added by `create_eager_input.sh` to a real local +## path provided as a positional argument. Any further local tweaks to the +## TSV before running eager should be added below that in the form of bash +## commands to aid in reproducibility. + +## usage tsv_patch.sh + +local_data_dir="$(readlink -f ${1})" +input_tsv="$(readlink -f ${2})" +output_tsv="$(dirname ${local_data_dir})/$(basename -s ".tsv" ${input_tsv}).finalised.tsv" +columns_to_keep=("Sample_Name" "Library_ID" "Lane" "Colour_Chemistry" "SeqType" "Organism" "Strandedness" "UDG_Treatment" "R1" "R2" "BAM") +source $(readlink -f ${3}) ## Path to helper function script should be provided as 3rd argument. https://github.com/poseidon-framework/poseidon-eager/blob/main/scripts/source_me.sh + +## Index non-proliferated columns and exclude them from the finalised TSV +cut_selector='' +tsv_header=($(head -n1 ${input_tsv})) +for col_name in ${columns_to_keep[@]}; do + let idx=$(get_index_of ${col_name} "${columns_to_keep[@]}")+1 ## awk uses 1-based indexing + if [[ ! ${idx} -eq -1 ]]; then + cut_selector+="${idx}," + fi +done + +## Remove added columns, and put columns in right order +cut -f ${cut_selector%,} ${input_tsv} > ${output_tsv} +sed -i -e "s||${local_data_dir}|g" ${output_tsv} + +## Any further commands to edit the file before finalisation should be added below as shown +# sed -ie 's/replace_this/with_this/g' ${output_tsv} + +## Keep track of versions +version_file="$(dirname ${input_tsv})/script_versions.txt" +## Remove versions from older run if there +grep -v -F -e "$(basename ${0})" -e "source_me.sh for final TSV" ${version_file} >${version_file}.new +## Then add new versions +echo -e "$(basename ${0}):\t${VERSION}" >> ${version_file}.new +echo -e "source_me.sh for final TSV:\t${HELPER_FUNCTION_VERSION}" >>${version_file}.new +mv ${version_file}.new ${version_file} diff --git a/packages/2024_Antonio_HighMobility/script_versions.txt b/packages/2024_Antonio_HighMobility/script_versions.txt new file mode 100644 index 0000000..13ace45 --- /dev/null +++ b/packages/2024_Antonio_HighMobility/script_versions.txt @@ -0,0 +1,2 @@ +create_eager_input.sh: 0.5.1 +source_me.sh for initial TSV: 0.5.2