From 4e70bbc7f428bb3c4f23c49b3c248077e1ea79fb Mon Sep 17 00:00:00 2001 From: Tlkhi Date: Wed, 17 Sep 2025 02:29:45 +0330 Subject: [PATCH] Added SSF for 2024_Childebayeva_NorthernEurasian package --- .../2024_Childebayeva_NorthernEurasian.ssf | 17 +++++++++++++++++ 1 file changed, 17 insertions(+) create mode 100644 packages/2024_Childebayeva_NorthernEurasian/2024_Childebayeva_NorthernEurasian.ssf diff --git a/packages/2024_Childebayeva_NorthernEurasian/2024_Childebayeva_NorthernEurasian.ssf b/packages/2024_Childebayeva_NorthernEurasian/2024_Childebayeva_NorthernEurasian.ssf new file mode 100644 index 0000000..f1a5605 --- /dev/null +++ b/packages/2024_Childebayeva_NorthernEurasian/2024_Childebayeva_NorthernEurasian.ssf @@ -0,0 +1,17 @@ +poseidon_IDs udg library_built notes run_accession study_accession sample_accession sample_alias secondary_sample_accession first_public last_updated instrument_model library_layout library_source instrument_platform library_name library_strategy 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f1bf3a786308601f0758d262b5a15893;618349f18ad1048455db7b5884c88d69 +BOO006 half ds n/a ERR13137437 PRJEB74730 SAMEA5043933 BOO006 ERS2855667 2024-05-24 2024-05-24 Illumina HiSeq 4000 SINGLE GENOMIC ILLUMINA BOO006.A0101_rmdup WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR131/037/ERR13137437/ERR13137437.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR131/037/ERR13137437/ERR13137437_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR131/037/ERR13137437/ERR13137437_2.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR131/037/ERR13137437/ERR13137437.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR131/037/ERR13137437/ERR13137437_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR131/037/ERR13137437/ERR13137437_2.fastq.gz 4232606835;3428212;3749997 5a428722eaec09d52c89dd72d62dca26;2beff907fbacaa0213de117c00a16852;8c15d7ce7b7986cedfd396f56da9da78 133321698 ftp.sra.ebi.ac.uk/vol1/run/ERR131/ERR13137437/BOO006.A0101_rmdup.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR131/ERR13137437/BOO006.A0101_rmdup.bam.bai 1567fde99fba5af7b46e1308aa6d1f3e;a6c743f748ba94527869eff88d602f35 +BOO008 half ds n/a ERR13137429 PRJEB74730 SAMEA115646281 BOO008 ERS20098999 2024-05-24 2024-05-24 Illumina HiSeq 4000 PAIRED GENOMIC ILLUMINA BOO008.A0101.TF1.1 Targeted-Capture ftp.sra.ebi.ac.uk/vol1/fastq/ERR131/029/ERR13137429/ERR13137429.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR131/029/ERR13137429/ERR13137429.fastq.gz 165445828 31121e7e37b7f4cde5d2a7fbdf95e3fb 4962617 ftp.sra.ebi.ac.uk/vol1/run/ERR131/ERR13137429/BOO008.A0101.TF1.1.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR131/ERR13137429/BOO008.A0101.TF1.1.bam.bai cc2236d046f6b0c80cad6b5a4a6d508c;8fbe220dd94ce2c8ca9948cbff4de90b +BOO009 half ds n/a ERR13137430 PRJEB74730 SAMEA115646282 BOO009 ERS20099000 2024-05-24 2024-05-24 Illumina HiSeq 4000 PAIRED GENOMIC ILLUMINA BOO009.A0101.TF1.1 Targeted-Capture ftp.sra.ebi.ac.uk/vol1/fastq/ERR131/030/ERR13137430/ERR13137430.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR131/030/ERR13137430/ERR13137430.fastq.gz 403966654 149e19ded92091b8a16a4f2d16024ade 13047471 ftp.sra.ebi.ac.uk/vol1/run/ERR131/ERR13137430/BOO009.A0101.TF1.1.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR131/ERR13137430/BOO009.A0101.TF1.1.bam.bai 9e3dea4381be846c4e6a626f353093b2;e94b342b6aab1bddaea88dbbe4eb473b +ROT002 minus ss n/a ERR13137403 PRJEB74730 SAMEA115646272 ROT002 ERS20098990 2024-05-24 2024-05-24 Illumina HiSeq 4000 SINGLE GENOMIC ILLUMINA ROT002_merged Targeted-Capture ftp.sra.ebi.ac.uk/vol1/fastq/ERR131/003/ERR13137403/ERR13137403.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR131/003/ERR13137403/ERR13137403.fastq.gz 2254961472 c0e90823d9594a4f6d385c569ec2c3a0 71833161 ftp.sra.ebi.ac.uk/vol1/run/ERR131/ERR13137403/ROT002_merged.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR131/ERR13137403/ROT002_merged.bam.bai f5ded14e95b13fb4ebadb6fbe2777648;86f8f1303fe559ed1027bf8fe62d615a +ROT003 minus ss n/a ERR13137404 PRJEB74730 SAMEA115646273 ROT003 ERS20098991 2024-05-24 2024-05-24 Illumina HiSeq 4000 SINGLE GENOMIC ILLUMINA ROT003_merged Targeted-Capture ftp.sra.ebi.ac.uk/vol1/fastq/ERR131/004/ERR13137404/ERR13137404.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR131/004/ERR13137404/ERR13137404.fastq.gz 2256582664 7fecaa0660e9aa0fe433b0852ad8d207 75096195 ftp.sra.ebi.ac.uk/vol1/run/ERR131/ERR13137404/ROT003_merged.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR131/ERR13137404/ROT003_merged.bam.bai 6f5c087c88355c1b7863c5eb64a72b3a;5e8d16327a167326fa92ef304e9491f0 +ROT004 minus ss n/a ERR13137405 PRJEB74730 SAMEA115646274 ROT004 ERS20098992 2024-05-24 2024-05-24 Illumina HiSeq 4000 SINGLE GENOMIC ILLUMINA ROT004_merged Targeted-Capture ftp.sra.ebi.ac.uk/vol1/fastq/ERR131/005/ERR13137405/ERR13137405.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR131/005/ERR13137405/ERR13137405.fastq.gz 2001542799 5bf758ee9ed26f9a2a305e4d70c8c6b9 65795832 ftp.sra.ebi.ac.uk/vol1/run/ERR131/ERR13137405/ROT004_merged.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR131/ERR13137405/ROT004_merged.bam.bai ff071e9d2e015574bbe120b76d612125;df562e520cff2b64c919d238d4b16f07 +ROT006 minus ss n/a ERR13137406 PRJEB74730 SAMEA115646275 ROT006 ERS20098993 2024-05-24 2024-05-24 Illumina HiSeq 4000 SINGLE GENOMIC ILLUMINA ROT006_merged Targeted-Capture ftp.sra.ebi.ac.uk/vol1/fastq/ERR131/006/ERR13137406/ERR13137406.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR131/006/ERR13137406/ERR13137406.fastq.gz 2172225699 363a456267fa127feaa611ab4c1d3474 72668582 ftp.sra.ebi.ac.uk/vol1/run/ERR131/ERR13137406/ROT006_merged.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR131/ERR13137406/ROT006_merged.bam.bai aa5164f20cce6063544baa73b7076033;e6f43509861eaa4f011af7ec2f750bb3 +ROT011 minus ss n/a ERR13137407 PRJEB74730 SAMEA115646276 ROT011 ERS20098994 2024-05-24 2024-05-24 Illumina HiSeq 4000 SINGLE GENOMIC ILLUMINA ROT011.merged Targeted-Capture ftp.sra.ebi.ac.uk/vol1/fastq/ERR131/007/ERR13137407/ERR13137407.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR131/007/ERR13137407/ERR13137407.fastq.gz 1803630042 3ce1d92c0e2bbee5ef4bc1aac9e202fb 55926511 ftp.sra.ebi.ac.uk/vol1/run/ERR131/ERR13137407/ROT011_merged.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR131/ERR13137407/ROT011_merged.bam.bai c57410404379d07003eb612ab7633c57;2cd60794a57dda3a13a0449746d4e501 +ROT013 minus ss n/a ERR13137408 PRJEB74730 SAMEA115646277 ROT013 ERS20098995 2024-05-24 2024-05-24 Illumina HiSeq 4000 SINGLE GENOMIC ILLUMINA ROT013_merged Targeted-Capture ftp.sra.ebi.ac.uk/vol1/fastq/ERR131/008/ERR13137408/ERR13137408.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR131/008/ERR13137408/ERR13137408.fastq.gz 1945825904 b327d55971f3cc2265632fa8649df43a 59743824 ftp.sra.ebi.ac.uk/vol1/run/ERR131/ERR13137408/ROT013_merged.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR131/ERR13137408/ROT013_merged.bam.bai 2d62ef1fcdae53ca8d65e902690160b2;c1dadb62fb8e6ae18674a701d7f49216 +ROT015 minus ss n/a ERR13137409 PRJEB74730 SAMEA115646278 ROT015 ERS20098996 2024-05-24 2024-05-24 Illumina HiSeq 4000 SINGLE GENOMIC ILLUMINA ROT015_merged Targeted-Capture ftp.sra.ebi.ac.uk/vol1/fastq/ERR131/009/ERR13137409/ERR13137409.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR131/009/ERR13137409/ERR13137409.fastq.gz 1964537495 a1b00e8a84e9efd779b95defa5ebe8bb 64423723 ftp.sra.ebi.ac.uk/vol1/run/ERR131/ERR13137409/ROT015_merged.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR131/ERR13137409/ROT015_merged.bam.bai fc9ca414e3fa0abff579a27d2c5dab5e;3d1e54af0ebf9bef016a10ed46b703ff +ROT016 minus ss n/a ERR13137410 PRJEB74730 SAMEA115646279 ROT016 ERS20098997 2024-05-24 2024-05-24 Illumina HiSeq 4000 SINGLE GENOMIC ILLUMINA ROT016_merged Targeted-Capture ftp.sra.ebi.ac.uk/vol1/fastq/ERR131/010/ERR13137410/ERR13137410.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR131/010/ERR13137410/ERR13137410.fastq.gz 2450997514 41684856d0841ddee2c580f14087e09a 72900732 ftp.sra.ebi.ac.uk/vol1/run/ERR131/ERR13137410/ROT016_merged.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR131/ERR13137410/ROT016_merged.bam.bai 2b9257e3cd3baa1800f53c5154832ecd;76bd528282a99e2b20071b413e769d9b +ROT017 minus ss n/a ERR13137411 PRJEB74730 SAMEA115646280 ROT017 ERS20098998 2024-05-24 2024-05-24 Illumina HiSeq 4000 SINGLE GENOMIC ILLUMINA ROT017 Targeted-Capture ftp.sra.ebi.ac.uk/vol1/fastq/ERR131/011/ERR13137411/ERR13137411.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR131/011/ERR13137411/ERR13137411.fastq.gz 119901137 a98228c16109f0e7ba6c22346532b0de 3527919 ftp.sra.ebi.ac.uk/vol1/run/ERR131/ERR13137411/ROT017.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR131/ERR13137411/ROT017.bam.bai 5ee7614cf7dd8606e5617452c5f0ad31;42a0b78383f9955ab38c5ec5de25d893