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Maybe this could be implemented with sth. like pipes-zlib. It would allow for even smaller file sizes, which in turn would simplify and speed up a lot of our operations.
Ideally poseidon-hs should recognize .[bed|bim|geno|snp].gz suffixes in file names and stream the respective files accordingly when reading a package.
I suggest we play around with this here to see if it's possible and feasible. Later we could consider adding it to the standard.
The text was updated successfully, but these errors were encountered:
yes. Note that last time I tried pipes-zlib sadly suffered from this bug: k0001/pipes-zlib#16 which was actually a bug in some other library upstream. I ended up decompressing directly from lazy bytestring (https://hackage.haskell.org/package/zlib-0.6.3.0/docs/Codec-Compression-Zlib.html) before then piping it through a suitable Pipes.Parser. So, definitely possible, but definitely also requires some playing around.
Maybe this could be implemented with sth. like pipes-zlib. It would allow for even smaller file sizes, which in turn would simplify and speed up a lot of our operations.
Ideally poseidon-hs should recognize
.[bed|bim|geno|snp].gz
suffixes in file names and stream the respective files accordingly when reading a package.I suggest we play around with this here to see if it's possible and feasible. Later we could consider adding it to the standard.
The text was updated successfully, but these errors were encountered: