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The data loading container fails when it tries to download https://github.com/DiseaseOntology/HumanDiseaseOntology/raw/master/src/ontology/doid.obo
motherlode_1 | 2020-11-18 17:27:05,985 HELOMICS_HETIONET INFO: 2020-11-18T17:27:05.983637831Z downloading https://github.com/DiseaseOntology/HumanDiseaseOntology/raw/master/src/ontology/doid.obo to /app/dataloader/../dataset/disease_ontology/doid.obo motherlode_1 | motherlode_1 | 2020-11-18 17:27:06,287 HELOMICS_HETIONET INFO: 2020-11-18T17:27:06.286466529Z URL *** motherlode_1 | motherlode_1 | 2020-11-18 17:27:06,288 HELOMICS_HETIONET INFO: 2020-11-18T17:27:06.286524846Z pw SomeTestHere motherlode_1 | motherlode_1 | 2020-11-18 17:27:06,289 HELOMICS_HETIONET INFO: 2020-11-18T17:27:06.286541817Z user neo4j motherlode_1 | motherlode_1 | 2020-11-18 17:27:06,289 HELOMICS_HETIONET INFO: 2020-11-18T17:27:06.286555575Z Code block 'Downloader' took: 13.71501 s motherlode_1 | motherlode_1 | 2020-11-18 17:27:06,292 HELOMICS_HETIONET INFO: 2020-11-18T17:27:06.292236156Z Traceback (most recent call last): motherlode_1 | motherlode_1 | 2020-11-18 17:27:06,293 HELOMICS_HETIONET INFO: 2020-11-18T17:27:06.292285742Z File "./main.py", line 38, in <module> motherlode_1 | motherlode_1 | 2020-11-18 17:27:06,294 HELOMICS_HETIONET INFO: 2020-11-18T17:27:06.292306764Z download() motherlode_1 | motherlode_1 | 2020-11-18 17:27:06,295 HELOMICS_HETIONET INFO: 2020-11-18T17:27:06.292322897Z File "/app/dataloader/download_data.py", line 127, in download motherlode_1 | motherlode_1 | 2020-11-18 17:27:06,296 HELOMICS_HETIONET INFO: 2020-11-18T17:27:06.292339030Z download_disease_dataset() motherlode_1 | motherlode_1 | 2020-11-18 17:27:06,296 HELOMICS_HETIONET INFO: 2020-11-18T17:27:06.292355303Z File "/app/dataloader/download_data.py", line 62, in download_disease_dataset motherlode_1 | motherlode_1 | 2020-11-18 17:27:06,297 HELOMICS_HETIONET INFO: 2020-11-18T17:27:06.292371995Z download_file(config.DISEASE_DOWNLOAD_URL, config.DISEASE_OBO_FILE) motherlode_1 | motherlode_1 | 2020-11-18 17:27:06,298 HELOMICS_HETIONET INFO: 2020-11-18T17:27:06.292388616Z File "/app/dataloader/download_data.py", line 31, in download_file motherlode_1 | motherlode_1 | 2020-11-18 17:27:06,298 HELOMICS_HETIONET INFO: 2020-11-18T17:27:06.292419486Z with urllib.request.urlopen(url) as response: motherlode_1 | motherlode_1 | 2020-11-18 17:27:06,298 HELOMICS_HETIONET INFO: 2020-11-18T17:27:06.292435130Z File "/usr/local/lib/python3.6/urllib/request.py", line 223, in urlopen motherlode_1 | motherlode_1 | 2020-11-18 17:27:06,298 HELOMICS_HETIONET INFO: 2020-11-18T17:27:06.292450704Z return opener.open(url, data, timeout) motherlode_1 | motherlode_1 | 2020-11-18 17:27:06,299 HELOMICS_HETIONET INFO: 2020-11-18T17:27:06.292465231Z File "/usr/local/lib/python3.6/urllib/request.py", line 532, in open motherlode_1 | motherlode_1 | 2020-11-18 17:27:06,299 HELOMICS_HETIONET INFO: 2020-11-18T17:27:06.292509998Z response = meth(req, response) motherlode_1 | motherlode_1 | 2020-11-18 17:27:06,299 HELOMICS_HETIONET INFO: 2020-11-18T17:27:06.292549318Z File "/usr/local/lib/python3.6/urllib/request.py", line 642, in http_response motherlode_1 | motherlode_1 | 2020-11-18 17:27:06,299 HELOMICS_HETIONET INFO: 2020-11-18T17:27:06.292574670Z 'http', request, response, code, msg, hdrs) motherlode_1 | motherlode_1 | 2020-11-18 17:27:06,300 HELOMICS_HETIONET INFO: 2020-11-18T17:27:06.292609101Z File "/usr/local/lib/python3.6/urllib/request.py", line 570, in error motherlode_1 | motherlode_1 | 2020-11-18 17:27:06,300 HELOMICS_HETIONET INFO: 2020-11-18T17:27:06.292632079Z return self._call_chain(*args) motherlode_1 | motherlode_1 | 2020-11-18 17:27:06,300 HELOMICS_HETIONET INFO: 2020-11-18T17:27:06.292650237Z File "/usr/local/lib/python3.6/urllib/request.py", line 504, in _call_chain motherlode_1 | motherlode_1 | 2020-11-18 17:27:06,300 HELOMICS_HETIONET INFO: 2020-11-18T17:27:06.292673913Z result = func(*args) motherlode_1 | motherlode_1 | 2020-11-18 17:27:06,300 HELOMICS_HETIONET INFO: 2020-11-18T17:27:06.292691583Z File "/usr/local/lib/python3.6/urllib/request.py", line 650, in http_error_default motherlode_1 | motherlode_1 | 2020-11-18 17:27:06,301 HELOMICS_HETIONET INFO: 2020-11-18T17:27:06.292707855Z raise HTTPError(req.full_url, code, msg, hdrs, fp) motherlode_1 | motherlode_1 | 2020-11-18 17:27:06,301 HELOMICS_HETIONET INFO: 2020-11-18T17:27:06.292724757Z urllib.error.HTTPError: HTTP Error 404: Not Found
The text was updated successfully, but these errors were encountered:
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The data loading container fails when it tries to download https://github.com/DiseaseOntology/HumanDiseaseOntology/raw/master/src/ontology/doid.obo
The text was updated successfully, but these errors were encountered: