-
-
Notifications
You must be signed in to change notification settings - Fork 534
289 lines (239 loc) · 9.34 KB
/
test_on_push.yml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
name: PyBaMM
on:
workflow_dispatch:
pull_request:
env:
FORCE_COLOR: 3
PYBAMM_IDAKLU_EXPR_CASADI: ON
PYBAMM_IDAKLU_EXPR_IREE: ON
concurrency:
# github.workflow: name of the workflow, so that we don't cancel other workflows
# github.event.pull_request.number || github.ref: pull request number or branch name if not a pull request
group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }}
# Cancel in-progress runs when a new workflow with the same group name is triggered
# This avoids workflow runs on both pushes and PRs
cancel-in-progress: true
jobs:
style:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- name: Setup Python
uses: actions/setup-python@v5
with:
python-version: 3.12
- name: Set up uv
run: python -m pip install uv
- name: Check style
run: |
python -m uv pip install pre-commit
pre-commit run -a
run_unit_integration_and_coverage_tests:
needs: style
runs-on: ${{ matrix.os }}
strategy:
fail-fast: false
matrix:
os: [ubuntu-latest, macos-12, macos-14, windows-latest]
python-version: ["3.9", "3.10", "3.11", "3.12"]
name: Tests (${{ matrix.os }} / Python ${{ matrix.python-version }})
steps:
- name: Check out PyBaMM repository
uses: actions/checkout@v4
- name: Install Linux system dependencies
uses: awalsh128/[email protected]
if: matrix.os == 'ubuntu-latest'
with:
packages: gfortran gcc graphviz pandoc
execute_install_scripts: true
# dot -c is for registering graphviz fonts and plugins
- name: Install OpenBLAS and TeXLive for Linux
if: matrix.os == 'ubuntu-latest'
run: |
sudo apt-get update
sudo dot -c
sudo apt-get install libopenblas-dev texlive-latex-extra dvipng
- name: Install macOS system dependencies
if: matrix.os == 'macos-12' || matrix.os == 'macos-14'
env:
HOMEBREW_NO_INSTALL_CLEANUP: 1
HOMEBREW_NO_AUTO_UPDATE: 1
HOMEBREW_NO_COLOR: 1
# Speed up CI
NONINTERACTIVE: 1
# sometimes gfortran cannot be found, so reinstall gcc just to be sure
run: |
brew analytics off
brew install graphviz libomp
brew reinstall gcc
- name: Install Windows system dependencies
if: matrix.os == 'windows-latest'
run: choco install graphviz --version=8.0.5
- name: Set up Python ${{ matrix.python-version }}
id: setup-python
uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python-version }}
cache: 'pip'
- name: Set up uv
run: python -m pip install uv
- name: Install nox
run: python -m uv pip install nox[uv]
- name: Cache pybamm-requires nox environment for GNU/Linux and macOS
uses: actions/cache@v4
if: matrix.os != 'windows-latest'
with:
path: |
# Repository files
${{ github.workspace }}/pybind11/
${{ github.workspace }}/install_KLU_Sundials/
# Headers and dynamic library files for SuiteSparse and SUNDIALS
${{ env.HOME }}/.local/lib/
${{ env.HOME }}/.local/include/
key: nox-${{ matrix.os }}-pybamm-requires-${{ steps.setup-python.outputs.python-version }}-${{ hashFiles('**/install_KLU_Sundials.py', '**/noxfile.py', '**/test_on_push.yml') }}
- name: Install SuiteSparse and SUNDIALS on GNU/Linux and macOS
timeout-minutes: 10
if: matrix.os != 'windows-latest'
run: python -m nox -s pybamm-requires
- name: Run unit tests for ${{ matrix.os }} with Python ${{ matrix.python-version }}
if: matrix.os != 'ubuntu-latest' || matrix.python-version != '3.12'
run: python -m nox -s unit
- name: Run coverage tests for ${{ matrix.os }} with Python ${{ matrix.python-version }}
if: matrix.os == 'ubuntu-latest' && matrix.python-version == '3.12'
run: python -m nox -s coverage
- name: Upload coverage report
if: matrix.os == 'ubuntu-latest' && matrix.python-version == '3.12'
uses: codecov/[email protected]
with:
token: ${{ secrets.CODECOV_TOKEN }}
- name: Run integration tests for ${{ matrix.os }} with Python ${{ matrix.python-version }}
run: python -m nox -s integration
# Skips IDAKLU module compilation for speedups, which is already tested in other jobs.
run_doctests:
needs: style
runs-on: ubuntu-latest
strategy:
fail-fast: false
name: Doctests (ubuntu-latest / Python 3.11)
steps:
- name: Check out PyBaMM repository
uses: actions/checkout@v4
with:
fetch-depth: 0
- name: Install Linux system dependencies
uses: awalsh128/[email protected]
with:
packages: graphviz pandoc
execute_install_scripts: true
# dot -c is for registering graphviz fonts and plugins
- name: Install TeXLive for Linux
run: |
sudo apt-get update
sudo dot -c
sudo apt-get install texlive-latex-extra dvipng
- name: Set up Python
id: setup-python
uses: actions/setup-python@v5
with:
python-version: 3.11
cache: 'pip'
- name: Set up uv
run: python -m pip install uv
- name: Install nox
run: python -m uv pip install nox[uv]
- name: Install docs dependencies and run doctests for GNU/Linux
run: python -m nox -s doctests
- name: Check if the documentation can be built for GNU/Linux
run: python -m nox -s docs
run_example_tests:
needs: style
runs-on: ubuntu-latest
strategy:
fail-fast: false
name: Example notebooks (ubuntu-latest / Python 3.12)
steps:
- name: Check out PyBaMM repository
uses: actions/checkout@v4
- name: Install Linux system dependencies
uses: awalsh128/[email protected]
with:
packages: gfortran gcc graphviz pandoc
execute_install_scripts: true
# dot -c is for registering graphviz fonts and plugins
- name: Install OpenBLAS and TeXLive for Linux
run: |
sudo apt-get update
sudo dot -c
sudo apt-get install libopenblas-dev texlive-latex-extra dvipng
- name: Set up Python 3.12
id: setup-python
uses: actions/setup-python@v5
with:
python-version: 3.12
cache: 'pip'
- name: Set up uv
run: python -m pip install uv
- name: Install nox
run: python -m uv pip install nox[uv]
- name: Cache pybamm-requires nox environment for GNU/Linux
uses: actions/cache@v4
with:
path: |
# Repository files
${{ github.workspace }}/pybind11/
${{ github.workspace }}/install_KLU_Sundials/
# Headers and dynamic library files for SuiteSparse and SUNDIALS
${{ env.HOME }}/.local/lib/
${{ env.HOME }}/.local/include/
key: nox-${{ matrix.os }}-pybamm-requires-${{ steps.setup-python.outputs.python-version }}-${{ hashFiles('**/install_KLU_Sundials.py', '**/noxfile.py', '**/test_on_push.yml') }}
- name: Install SuiteSparse and SUNDIALS on GNU/Linux
timeout-minutes: 10
run: python -m nox -s pybamm-requires
- name: Run example notebooks tests for GNU/Linux with Python 3.12
run: python -m nox -s examples
run_scripts_tests:
needs: style
runs-on: ubuntu-latest
strategy:
fail-fast: false
name: Example scripts (ubuntu-latest / Python 3.12)
steps:
- name: Check out PyBaMM repository
uses: actions/checkout@v4
- name: Install Linux system dependencies
uses: awalsh128/[email protected]
with:
packages: gfortran gcc graphviz
execute_install_scripts: true
# dot -c is for registering graphviz fonts and plugins
- name: Install OpenBLAS and TeXLive for Linux
run: |
sudo apt-get update
sudo dot -c
sudo apt-get install libopenblas-dev texlive-latex-extra dvipng
- name: Set up Python 3.12
id: setup-python
uses: actions/setup-python@v5
with:
python-version: 3.12
cache: 'pip'
- name: Set up uv
run: python -m pip install uv
- name: Install nox
run: python -m uv pip install nox[uv]
- name: Cache pybamm-requires nox environment for GNU/Linux
uses: actions/cache@v4
with:
path: |
# Repository files
${{ github.workspace }}/pybind11/
${{ github.workspace }}/install_KLU_Sundials/
# Headers and dynamic library files for SuiteSparse and SUNDIALS
${{ env.HOME }}/.local/lib/
${{ env.HOME }}/.local/include/
key: nox-${{ matrix.os }}-pybamm-requires-${{ steps.setup-python.outputs.python-version }}-${{ hashFiles('**/install_KLU_Sundials.py', '**/noxfile.py', '**/test_on_push.yml') }}
- name: Install SuiteSparse and SUNDIALS on GNU/Linux
timeout-minutes: 10
run: python -m nox -s pybamm-requires
- name: Run example scripts tests for GNU/Linux with Python 3.12
run: python -m nox -s scripts