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When using transforms.ToUndirected() it will copy all items with the same dimension as the edge index. For large graphs it is increasingly unlikely that a feature has the same dimension as the number of edges, but relying on this can still cause annoying bugs. I had a dataset with some graphs only having one edge originally, and a per graph target vector. This is not handled correctly by the transform.
I assume the root of the problem lies in the _store.is_edge_attr() function, but I could not find source or documentation for it in the docs.
Versions
PyTorch version: 1.13.1
Is debug build: False
CUDA used to build PyTorch: 11.7
ROCM used to build PyTorch: N/A
OS: Rocky Linux 8.6 (Green Obsidian) (x86_64)
GCC version: (GCC) 8.5.0 20210514 (Red Hat 8.5.0-10)
Clang version: 13.0.1 (Red Hat 13.0.1-2.module+el8.6.0+987+d36ea6a1)
CMake version: version 3.20.2
Libc version: glibc-2.28
Python version: 3.10.9 (main, Jan 11 2023, 15:21:40) [GCC 11.2.0] (64-bit runtime)
Python platform: Linux-4.18.0-372.9.1.el8.x86_64-x86_64-with-glibc2.28
Is CUDA available: True
CUDA runtime version: 11.7.99
CUDA_MODULE_LOADING set to: LAZY
GPU models and configuration:
GPU 0: NVIDIA A40
GPU 1: NVIDIA A40
GPU 2: NVIDIA A40
GPU 3: NVIDIA A40
GPU 4: NVIDIA A40
GPU 5: NVIDIA A40
GPU 6: NVIDIA A40
GPU 7: NVIDIA A40
Nvidia driver version: 535.104.05
cuDNN version: Could not collect
HIP runtime version: N/A
MIOpen runtime version: N/A
Is XNNPACK available: True
CPU:
Architecture: x86_64
CPU op-mode(s): 32-bit, 64-bit
Byte Order: Little Endian
CPU(s): 96
On-line CPU(s) list: 0-95
Thread(s) per core: 2
Core(s) per socket: 24
Socket(s): 2
NUMA node(s): 2
Vendor ID: GenuineIntel
CPU family: 6
Model: 85
Model name: Intel(R) Xeon(R) Platinum 8268 CPU @ 2.90GHz
Stepping: 7
CPU MHz: 3575.911
CPU max MHz: 3900.0000
CPU min MHz: 1200.0000
BogoMIPS: 5800.00
Virtualization: VT-x
L1d cache: 32K
L1i cache: 32K
L2 cache: 1024K
L3 cache: 36608K
NUMA node0 CPU(s): 0,2,4,6,8,10,12,14,16,18,20,22,24,26,28,30,32,34,36,38,40,42,44,46,48,50,52,54,56,58,60,62,64,66,68,70,72,74,76,78,80,82,84,86,88,90,92,94
NUMA node1 CPU(s): 1,3,5,7,9,11,13,15,17,19,21,23,25,27,29,31,33,35,37,39,41,43,45,47,49,51,53,55,57,59,61,63,65,67,69,71,73,75,77,79,81,83,85,87,89,91,93,95
Flags: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc art arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc cpuid aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 sdbg fma cx16 xtpr pdcm pcid dca sse4_1 sse4_2 x2apic movbe popcnt tsc_deadline_timer aes xsave avx f16c rdrand lahf_lm abm 3dnowprefetch cpuid_fault epb cat_l3 cdp_l3 invpcid_single intel_ppin ssbd mba ibrs ibpb stibp ibrs_enhanced tpr_shadow vnmi flexpriority ept vpid ept_ad fsgsbase tsc_adjust bmi1 avx2 smep bmi2 erms invpcid cqm mpx rdt_a avx512f avx512dq rdseed adx smap clflushopt clwb intel_pt avx512cd avx512bw avx512vl xsaveopt xsavec xgetbv1 xsaves cqm_llc cqm_occup_llc cqm_mbm_total cqm_mbm_local dtherm ida arat pln pts pku ospke avx512_vnni md_clear flush_l1d arch_capabilities
The text was updated successfully, but these errors were encountered:
🐛 Describe the bug
When using transforms.ToUndirected() it will copy all items with the same dimension as the edge index. For large graphs it is increasingly unlikely that a feature has the same dimension as the number of edges, but relying on this can still cause annoying bugs. I had a dataset with some graphs only having one edge originally, and a per graph target vector. This is not handled correctly by the transform.
I assume the root of the problem lies in the _store.is_edge_attr() function, but I could not find source or documentation for it in the docs.
Versions
PyTorch version: 1.13.1
Is debug build: False
CUDA used to build PyTorch: 11.7
ROCM used to build PyTorch: N/A
OS: Rocky Linux 8.6 (Green Obsidian) (x86_64)
GCC version: (GCC) 8.5.0 20210514 (Red Hat 8.5.0-10)
Clang version: 13.0.1 (Red Hat 13.0.1-2.module+el8.6.0+987+d36ea6a1)
CMake version: version 3.20.2
Libc version: glibc-2.28
Python version: 3.10.9 (main, Jan 11 2023, 15:21:40) [GCC 11.2.0] (64-bit runtime)
Python platform: Linux-4.18.0-372.9.1.el8.x86_64-x86_64-with-glibc2.28
Is CUDA available: True
CUDA runtime version: 11.7.99
CUDA_MODULE_LOADING set to: LAZY
GPU models and configuration:
GPU 0: NVIDIA A40
GPU 1: NVIDIA A40
GPU 2: NVIDIA A40
GPU 3: NVIDIA A40
GPU 4: NVIDIA A40
GPU 5: NVIDIA A40
GPU 6: NVIDIA A40
GPU 7: NVIDIA A40
Nvidia driver version: 535.104.05
cuDNN version: Could not collect
HIP runtime version: N/A
MIOpen runtime version: N/A
Is XNNPACK available: True
CPU:
Architecture: x86_64
CPU op-mode(s): 32-bit, 64-bit
Byte Order: Little Endian
CPU(s): 96
On-line CPU(s) list: 0-95
Thread(s) per core: 2
Core(s) per socket: 24
Socket(s): 2
NUMA node(s): 2
Vendor ID: GenuineIntel
CPU family: 6
Model: 85
Model name: Intel(R) Xeon(R) Platinum 8268 CPU @ 2.90GHz
Stepping: 7
CPU MHz: 3575.911
CPU max MHz: 3900.0000
CPU min MHz: 1200.0000
BogoMIPS: 5800.00
Virtualization: VT-x
L1d cache: 32K
L1i cache: 32K
L2 cache: 1024K
L3 cache: 36608K
NUMA node0 CPU(s): 0,2,4,6,8,10,12,14,16,18,20,22,24,26,28,30,32,34,36,38,40,42,44,46,48,50,52,54,56,58,60,62,64,66,68,70,72,74,76,78,80,82,84,86,88,90,92,94
NUMA node1 CPU(s): 1,3,5,7,9,11,13,15,17,19,21,23,25,27,29,31,33,35,37,39,41,43,45,47,49,51,53,55,57,59,61,63,65,67,69,71,73,75,77,79,81,83,85,87,89,91,93,95
Flags: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc art arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc cpuid aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 sdbg fma cx16 xtpr pdcm pcid dca sse4_1 sse4_2 x2apic movbe popcnt tsc_deadline_timer aes xsave avx f16c rdrand lahf_lm abm 3dnowprefetch cpuid_fault epb cat_l3 cdp_l3 invpcid_single intel_ppin ssbd mba ibrs ibpb stibp ibrs_enhanced tpr_shadow vnmi flexpriority ept vpid ept_ad fsgsbase tsc_adjust bmi1 avx2 smep bmi2 erms invpcid cqm mpx rdt_a avx512f avx512dq rdseed adx smap clflushopt clwb intel_pt avx512cd avx512bw avx512vl xsaveopt xsavec xgetbv1 xsaves cqm_llc cqm_occup_llc cqm_mbm_total cqm_mbm_local dtherm ida arat pln pts pku ospke avx512_vnni md_clear flush_l1d arch_capabilities
The text was updated successfully, but these errors were encountered: