diff --git a/.github/workflows/build.yml b/.github/workflows/build.yml index b56b2515..dbe79726 100644 --- a/.github/workflows/build.yml +++ b/.github/workflows/build.yml @@ -9,8 +9,7 @@ on: workflow_dispatch: env: LATEST_PY_VERSION: '3.13' - COVERAGE_ARGS: '--cov --cov-report=term --cov-report=xml' - XDIST_ARGS: '--numprocesses=auto' + PYTEST_VERBOSE: 'true' jobs: # Run unit tests for each supported python version @@ -26,9 +25,7 @@ jobs: - uses: actions/setup-python@v5 with: python-version: ${{ matrix.python-version }} - - uses: snok/install-poetry@v1.4 - with: - virtualenvs-in-project: true + - uses: yezz123/setup-uv@v4 # Cache packages per python version, and reuse until lockfile changes - name: Cache python packages @@ -36,14 +33,14 @@ jobs: uses: actions/cache@v4 with: path: .venv - key: venv-${{ matrix.python-version }}-${{ hashFiles('poetry.lock') }} + key: venv-${{ matrix.python-version }}-${{ hashFiles('uv.lock') }} - name: Install dependencies if: steps.cache.outputs.cache-hit != 'true' - run: poetry install -v -E all + run: uv sync # Run tests with coverage report - name: Run tests - run: poetry run pytest -rs -x -vv ${{ env.XDIST_ARGS }} ${{ env.COVERAGE_ARGS }} + run: uv run nox -e cov -- xml # Latest python version: send coverage report to codecov - name: "Upload coverage report to Codecov" diff --git a/.github/workflows/deploy.yml b/.github/workflows/deploy.yml index 1cba7931..7eadc439 100644 --- a/.github/workflows/deploy.yml +++ b/.github/workflows/deploy.yml @@ -27,9 +27,7 @@ jobs: - uses: actions/setup-python@v5 with: python-version: ${{ env.LATEST_PY_VERSION }} - - uses: snok/install-poetry@v1.4 - with: - virtualenvs-in-project: true + - uses: yezz123/setup-uv@v4 - name: Set pre-release version if: ${{ !startsWith(github.ref, 'refs/tags/v') }} @@ -37,20 +35,12 @@ jobs: pre-release-suffix: ${{ github.event.inputs.pre-release-suffix || 'dev' }} pre-release-version: ${{ github.event.inputs.pre-release-version || github.run_number }} run: | - poetry version $(poetry version -s).${{ env.pre-release-suffix }}${{ env.pre-release-version }} - poetry version + PKG_VERSION=$(uvx --from=toml-cli toml get --toml-path=pyproject.toml project.version) + DEV_VERSION=$PKG_VERSION.${{ env.pre-release-suffix }}${{ env.pre-release-version }} + echo "Setting pre-release version to $DEV_VERSION" + uvx --from=toml-cli toml set --toml-path=pyproject.toml project.version $DEV_VERSION - name: Build package distributions - run: poetry build + run: uvx --from build pyproject-build --installer uv - name: Publish package distributions to PyPI uses: pypa/gh-action-pypi-publish@release/v1 - - # Notify Docker image repo that there's a new release available - #- name: Repository Dispatch - # if: ${{ startsWith(github.ref, 'refs/tags/v') }} - # uses: peter-evans/repository-dispatch@v1 - # with: - # token: ${{ secrets.DOCKERHUB_TRIGGER_TOKEN }} - # repository: JWCook/pyinaturalist-notebook - # event-type: post-release - # client-payload: '{"ref": "${{ github.ref }}", "sha": "${{ github.sha }}"}' diff --git a/.gitignore b/.gitignore index 75c3ad3c..98eeb0b6 100644 --- a/.gitignore +++ b/.gitignore @@ -18,6 +18,7 @@ eggs lib lib64 parts +scratch sdist var venv/ @@ -52,6 +53,7 @@ docs/examples docs/sample_data docs/models/ docs/modules/ +docs/requirements.txt # Mac OS X .DS_Store diff --git a/.readthedocs.yml b/.readthedocs.yml index 97fb661f..1c0100fc 100644 --- a/.readthedocs.yml +++ b/.readthedocs.yml @@ -9,10 +9,13 @@ build: os: 'ubuntu-24.04' tools: python: '3.12' - + jobs: + # Use uv to export optional + documentation dependencies + post_create_environment: + - pip install uv + - uv export -q --no-dev --group docs --no-emit-project -o docs/requirements.txt python: install: - method: pip path: . - extra_requirements: - - docs + - requirements: docs/requirements.txt diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md index a553c386..720dbdb4 100644 --- a/CONTRIBUTING.md +++ b/CONTRIBUTING.md @@ -3,11 +3,11 @@ Contributions are welcome, and they are greatly appreciated! Every little bit helps, and credit will always be given. ## Installation -To set up for local development (requires [poetry](https://python-poetry.org)): +To set up for local development (requires [uv](https://docs.astral.sh/uv)): ```bash $ git clone https://github.com/pyinat/pyinaturalist.git $ cd pyinaturalist -$ poetry install -v -E docs +$ uv sync --all-extras --all-groups ``` ## Contribution Guidelines @@ -20,8 +20,10 @@ Here are some general guidelines for submitting a pull request: - Submit the PR to be merged into the `main` branch. ### Tests -We use the [pytest](https://docs.pytest.org/en/latest/) framework for unit testing. -Just run the `pytest` command to run locally. +To run all tests and linting: +```sh +uv run nox +``` #### Testing supported python versions For PRs, GitHub Actions will run these tests for each supported python version. @@ -43,7 +45,7 @@ For PRs, please include docstrings for all functions and classes. To build the docs locally: ```bash -$ nox -e docs +$ uv run nox -e docs ``` To preview: @@ -56,7 +58,7 @@ $ xdg-open docs/_build/html/index.html You can also use [sphinx-autobuild](https://github.com/executablebooks/sphinx-autobuild) to rebuild the docs and live reload in the browser whenever doc contents change: ```bash -$ nox -e livedocs +$ uv run nox -e livedocs ``` Project documentation is generated using [Sphinx](https://www.sphinx-doc.org), diff --git a/LICENSE b/LICENSE index 9a88046a..835d84ed 100644 --- a/LICENSE +++ b/LICENSE @@ -1,6 +1,6 @@ MIT License -Copyright (c) 2024 Jordan Cook +Copyright (c) 2025 Jordan Cook Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal diff --git a/noxfile.py b/noxfile.py index 692bd2fb..8ef1da1e 100644 --- a/noxfile.py +++ b/noxfile.py @@ -1,14 +1,14 @@ """Notes: -* 'test' command: nox will use poetry.lock to determine dependency versions +* 'test' command: nox will create new virtualenvs per python version * 'lint' command: tools and environments are managed by pre-commit -* All other commands: the current environment will be used instead of creating new ones +* All other commands: will use the project virtualenv managed by uv """ +from os import getenv from os.path import join from shutil import rmtree import nox -from nox_poetry import session nox.options.reuse_existing_virtualenvs = True nox.options.sessions = ['lint', 'cov'] @@ -16,6 +16,8 @@ LIVE_DOCS_PORT = 8181 LIVE_DOCS_IGNORE = ['*.csv', '*.ipynb', '*.pyc', '*.tmp', '**/modules/*'] LIVE_DOCS_WATCH = ['pyinaturalist', 'examples'] +DEFAULT_COVERAGE_FORMATS = ['html', 'term'] +DOC_BUILD_DIR = join('docs', '_build', 'html') CLEAN_DIRS = [ 'dist', 'build', @@ -25,15 +27,26 @@ ] -@session(python=['3.8', '3.9', '3.10', '3.11', '3.12', '3.13']) +def install_deps(session): + """Install project and test dependencies using uv""" + session.env['UV_PROJECT_ENVIRONMENT'] = session.virtualenv.location + session.run_install( + 'uv', + 'sync', + '--frozen', + '--all-extras', + ) + + +@nox.session(python=['3.8', '3.9', '3.10', '3.11', '3.12', '3.13'], venv_backend='uv') def test(session): """Run tests for a specific python version""" test_paths = session.posargs or ['test'] - session.install('.', 'pytest', 'pytest-sugar', 'pytest-xdist', 'requests-mock') + install_deps(session) session.run('pytest', '-n', 'auto', *test_paths) -@session(python=False) +@nox.session(python=False) def clean(session): """Clean up temporary build + documentation files""" for dir in CLEAN_DIRS: @@ -41,40 +54,47 @@ def clean(session): rmtree(dir, ignore_errors=True) -@session(python=False) -@session(python=False, name='cov') +@nox.session(python=False, name='cov') def coverage(session): """Run tests and generate coverage report""" - cmd = 'pytest -n auto --cov --cov-report=term --cov-report=html' - session.run(*cmd.split(' ')) + cmd = ['pytest', '--numprocesses=auto', '--cov'] + + # Add coverage formats + cov_formats = session.posargs or DEFAULT_COVERAGE_FORMATS + cmd += [f'--cov-report={f}' for f in cov_formats] + + # Add verbose flag, if set by environment + if getenv('PYTEST_VERBOSE'): + cmd += ['--verbose'] + session.run(*cmd) -@session(python=False) +@nox.session(python=False) def docs(session): """Build Sphinx documentation""" - cmd = 'sphinx-build docs docs/_build/html -j auto' - session.run(*cmd.split(' ')) + session.run('sphinx-build', 'docs', DOC_BUILD_DIR, '-j', 'auto') -@session(python=False) +@nox.session(python=False) def livedocs(session): """Auto-build docs with live reload in browser. Add `-- open` to also open the browser after starting. """ - args = ['-a'] - args += [f'--watch {pattern}' for pattern in LIVE_DOCS_WATCH] - args += [f'--ignore {pattern}' for pattern in LIVE_DOCS_IGNORE] - args += [f'--port {LIVE_DOCS_PORT}', '-j auto'] + cmd = ['sphinx-autobuild', 'docs', DOC_BUILD_DIR] + cmd += ['-a'] + cmd += ['--port', str(LIVE_DOCS_PORT), '-j', 'auto'] + for pattern in LIVE_DOCS_WATCH: + cmd += ['--watch', pattern] + for pattern in LIVE_DOCS_IGNORE: + cmd += ['--ignore', pattern] if session.posargs == ['open']: - args.append('--open-browser') + cmd.append('--open-browser') clean(session) - cmd = 'sphinx-autobuild docs docs/_build/html ' + ' '.join(args) - session.run(*cmd.split(' ')) + session.run(*cmd) -@session(python=False) +@nox.session(python=False) def lint(session): """Run linters and code formatters via pre-commit""" - cmd = 'pre-commit run --all-files' - session.run(*cmd.split(' ')) + session.run('pre-commit', 'run', '--all-files') diff --git a/poetry.lock b/poetry.lock deleted file mode 100644 index f943dc0e..00000000 --- a/poetry.lock +++ /dev/null @@ -1,3214 +0,0 @@ -# This file is automatically @generated by Poetry 1.8.3 and should not be changed by hand. - 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+[project] +name = 'pyinaturalist' +version = '0.20.1' +description = 'iNaturalist API client for python' +authors = [{ name = 'Jordan Cook' }] +license = 'MIT' +readme = 'README.md' keywords = [ - "inaturalist", - "biodiversity", - "conservation", - "citizen-science", - "community-science", - "api", - "api-client", - "data-model", - "requests", + 'inaturalist', + 'biodiversity', + 'conservation', + 'citizen-science', + 'community-science', + 'api', + 'api-client', + 'data-model', + 'requests', ] classifiers = [ - "Development Status :: 4 - Beta", - "Intended Audience :: Developers", - "Intended Audience :: Education", - "Intended Audience :: Science/Research", - "Topic :: Software Development :: Libraries :: Python Modules", - "Typing :: Typed", + 'Development Status :: 4 - Beta', + 'Intended Audience :: Developers', + 'Intended Audience :: Education', + 'Intended Audience :: Science/Research', + 'Topic :: Software Development :: Libraries :: Python Modules', + 'Typing :: Typed', ] 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