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Data not saving correctly #316
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Hi @swmercer34, thanks for opening this issue. Did you try to remove the spaces in the directory path (e.g. . Upgrading the the data-saving functionality in |
Hi @swmercer34, thanks @fdrgsp. Yeah, we're currently struggling to reproduce this. so we're going to need a bit more information. I'll make this information easier to gather in an upcoming PR, but for now, could you run the following commands and paste the output here?
and, if possible, include your micro-manager config file so we can see which devices you might be using |
Also, as @fdrgsp mentioned, the file-saving logic in napari-micromanager is lagging behind the activity in the lower level pymmcore-plus library... which now has much improved saving handlers for ome-tiff, ome-zarr, and tiff sequences. We haven't yet plugged it into napari-micromanager though, but changes and improvements are coming soon |
The issue I am having is with saving an image to an allocated directory. As you can see in the screenshot, I set up the acquisition to save to the directory, however all I end up with is a weird test image with no data and also nothing is saved to the allocated file. Has anyone come across this issue before? Is there anything anyone can suggest?
![Save acqusition issue - napari micromanager](https://private-user-images.githubusercontent.com/149545248/307999916-16eccc9e-dbfd-433e-b3fb-dd603a3e9cb0.PNG?jwt=eyJhbGciOiJIUzI1NiIsInR5cCI6IkpXVCJ9.eyJpc3MiOiJnaXRodWIuY29tIiwiYXVkIjoicmF3LmdpdGh1YnVzZXJjb250ZW50LmNvbSIsImtleSI6ImtleTUiLCJleHAiOjE3MjM5Njk2NTUsIm5iZiI6MTcyMzk2OTM1NSwicGF0aCI6Ii8xNDk1NDUyNDgvMzA3OTk5OTE2LTE2ZWNjYzllLWRiZmQtNDMzZS1iM2ZiLWRkNjAzYTNlOWNiMC5QTkc_WC1BbXotQWxnb3JpdGhtPUFXUzQtSE1BQy1TSEEyNTYmWC1BbXotQ3JlZGVudGlhbD1BS0lBVkNPRFlMU0E1M1BRSzRaQSUyRjIwMjQwODE4JTJGdXMtZWFzdC0xJTJGczMlMkZhd3M0X3JlcXVlc3QmWC1BbXotRGF0ZT0yMDI0MDgxOFQwODIyMzVaJlgtQW16LUV4cGlyZXM9MzAwJlgtQW16LVNpZ25hdHVyZT1mNTdiMTU1MTI5NmJiYmY4MjYzMzYyNTc2NTFlMGZhY2U5MjJmNmQ5MThlZWIxZDE2YTg5YmMwNDI0NTUwYzE2JlgtQW16LVNpZ25lZEhlYWRlcnM9aG9zdCZhY3Rvcl9pZD0wJmtleV9pZD0wJnJlcG9faWQ9MCJ9.jjQln6CSjfsw_3BsObcBaYFQmFZIuZTwZ54290-HI1s)
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