From 284cebae316a6efec59e27c321e3055179b83d4e Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Ester=20Mu=C3=B1oz=20del=20Campo?= <emunozdc99@gmail.com>
Date: Tue, 25 Jun 2024 12:37:56 +0200
Subject: [PATCH] Add example data file.

---
 src/pyranges_plot/example_data.py | 171 ++++++++++++++++++++++++++++++
 1 file changed, 171 insertions(+)
 create mode 100644 src/pyranges_plot/example_data.py

diff --git a/src/pyranges_plot/example_data.py b/src/pyranges_plot/example_data.py
new file mode 100644
index 0000000..ba4fe49
--- /dev/null
+++ b/src/pyranges_plot/example_data.py
@@ -0,0 +1,171 @@
+import pyranges as pr
+
+
+p1 = pr.PyRanges(
+    {
+        "Chromosome": [1, 1, 2, 2, 2, 2, 2, 3],
+        "Strand": ["+", "+", "-", "-", "+", "+", "+", "+"],
+        "Start": [1, 40, 10, 70, 85, 110, 150, 140],
+        "End": [11, 60, 25, 80, 100, 115, 180, 152],
+        "transcript_id": ["t1", "t1", "t2", "t2", "t3", "t3", "t3", "t4"],
+        "feature1": ["a", "a", "b", "b", "c", "c", "c", "d"],
+        "feature2": ["A", "A", "B", "B", "C", "C", "C", "D"],
+    }
+)
+
+p2 = pr.PyRanges(
+    {
+        "Chromosome": [1, 1, 2, 2, 2, 2, 2, 3, 4, 4, 4, 4, 4, 4],
+        "Strand": [
+            "+",
+            "+",
+            "-",
+            "-",
+            "+",
+            "+",
+            "+",
+            "+",
+            "-",
+            "-",
+            "-",
+            "-",
+            "+",
+            "+",
+        ],
+        "Start": [
+            1,
+            40,
+            10,
+            70,
+            85,
+            110,
+            150,
+            140,
+            30100,
+            30150,
+            30500,
+            30647,
+            29850,
+            29970,
+        ],
+        "End": [
+            11,
+            60,
+            25,
+            80,
+            100,
+            115,
+            180,
+            152,
+            30300,
+            30300,
+            30700,
+            30700,
+            29900,
+            30000,
+        ],
+        "transcript_id": [
+            "t1",
+            "t1",
+            "t2",
+            "t2",
+            "t3",
+            "t3",
+            "t3",
+            "t4",
+            "t5",
+            "t5",
+            "t5",
+            "t5",
+            "t6",
+            "t6",
+        ],
+        "feature1": [
+            "1",
+            "1",
+            "1",
+            "1",
+            "1",
+            "2",
+            "2",
+            "2",
+            "2",
+            "2",
+            "2",
+            "2",
+            "2",
+            "2",
+        ],
+        "feature2": [
+            "A",
+            "A",
+            "B",
+            "B",
+            "C",
+            "C",
+            "C",
+            "D",
+            "E",
+            "E",
+            "E",
+            "E",
+            "F",
+            "F",
+        ],
+        "Feature": [
+            "exon",
+            "exon",
+            "CDS",
+            "CDS",
+            "CDS",
+            "CDS",
+            "CDS",
+            "exon",
+            "exon",
+            "CDS",
+            "CDS",
+            "exon",
+            "CDS",
+            "CDS",
+        ],
+    }
+)
+
+p3 = pr.PyRanges(
+    {
+        "Chromosome": ["1"] * 10 + ["2"] * 10,
+        "Strand": ["+", "+", "+", "+", "-", "-", "-", "-", "+", "+"]
+        + ["+", "+", "+", "+", "-", "-", "-", "-", "+", "+"],
+        "Start": [90, 61, 104, 228, 9, 142, 52, 149, 218, 151]
+        + [6, 27, 37, 47, 1, 7, 42, 37, 60, 80],
+        "End": [92, 64, 113, 229, 12, 147, 57, 155, 224, 153]
+        + [8, 32, 40, 50, 5, 10, 46, 40, 70, 90],
+        "transcript_id": ["t1", "t1", "t1", "t1", "t2", "t2", "t2", "t2", "t3", "t3"]
+        + ["t4", "t4", "t4", "t4", "t5", "t5", "t5", "t5", "t6", "t6"],
+    }
+)
+
+
+p_ala = pr.PyRanges(
+    {
+        "Start": [10, 50, 90] + [13, 60, 72, 120],
+        "End": [20, 75, 130] + [16, 63, 75, 123],
+        "Chromosome": [1] * 7,
+        "id": ["gene1"] * 7,
+        "trait1": ["exon"] * 3 + ["aa"] * 4,
+        "trait2": ["gene_1"] * 3 + ["Ala"] * 4,
+        "depth": [0] * 3 + [1] * 4,
+    }
+)
+
+p_cys = pr.PyRanges(
+    {
+        "Start": [10, 50, 90] + [15, 55, 62, 100, 110],
+        "End": [20, 75, 130] + [18, 58, 65, 103, 113],
+        "Chromosome": [1] * 8,
+        "id": ["gene1"] * 8,
+        "trait1": ["exon"] * 3 + ["aa"] * 5,
+        "trait2": ["gene_1"] * 3 + ["Cys"] * 5,
+        "depth": [0] * 3 + [1] * 5,
+    }
+)