forked from AMReX-Codes/amrex
-
Notifications
You must be signed in to change notification settings - Fork 0
/
CHANGES
3091 lines (1695 loc) · 88 KB
/
CHANGES
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
895
896
897
898
899
900
901
902
903
904
905
906
907
908
909
910
911
912
913
914
915
916
917
918
919
920
921
922
923
924
925
926
927
928
929
930
931
932
933
934
935
936
937
938
939
940
941
942
943
944
945
946
947
948
949
950
951
952
953
954
955
956
957
958
959
960
961
962
963
964
965
966
967
968
969
970
971
972
973
974
975
976
977
978
979
980
981
982
983
984
985
986
987
988
989
990
991
992
993
994
995
996
997
998
999
1000
# 24.01
-- MLMG: Use free functions instead of MF member functions (#3681)
-- Add a few free functions for MLMG (#3680)
-- Eliminating Matrix operations in MLMG CG bottom solver if initial vector is zero (#3668)
-- Add a for loop that is unrolled at compile time (#3674)
-- Add PTD version of getParticleCell (#3675)
-- Improve ParIter docs (#3676)
-- Fix CI for ROCm 6.0 (#3673)
-- PureSoA IdCpu fixes (#3671)
-- CMake: AMReX_PARALLEL_LINK_JOBS (#3628)
-- Clang-Tidy in CI: Keep Going after Errors (#3667)
-- Delete empty below comments on classes and functions (#3669)
-- Documentation for Profiling: Hot Spots and Load Balance (#3622)
-- Fix warnings in SortParticlesForDeposition (#3664)
-- Fix Resize Issue of Fab with the Async Arena (#3663)
-- Fix SuperParticle `push_back` (#3661)
-- Pure SoA Particle: Separate Array for IdCPU (#3585)
-- Limit the scope of gpu_rand_generator (#3659)
-- Fix a typo in doxygen for NonLocalBC::FillBoundary (#3658)
-- GNU Make: Fix name collision for aurora (#3656)
-- two separate fixes -- particle_compare and ref_ratio=1 (#3655)
-- Clarify documentation on setEBDirchlet() and fix link to AMReX-Hydro (#3652)
-- Robustify the Cache Cleanup Scripts (#3650)
-- Disable CodeQL scheduled jobs on forks (#3649)
-- Work around compiler bug in nvcc 12.2 by using functor instead of lambda (#3653)
# 23.12
-- solve_cg: avoid use of MF `z` (#3637)
-- Fix: nosmt OMP Threads Default (#3647)
`amrex.omp_threads`: Can Avoid SMT (#3607)
-- When checking for periodic outs on GPU, copy full particle data (#3646)
-- MLEBABecLap: Support Robin BC at Domain Boundaries (#3617)
-- Ascent: SoA Particle Support (#3350)
-- solve_bicgstab: use fewer MFs (#3635)
-- solve_bicgstab: cut use of `s` (#3629)
-- Bug fix for amrex::Subtract when called with interger nghost (#3634)
-- Fix typo in `MLMGT<MF>::getGradSolution` when `MF` is different from `AMF` (#3631)
-- SUNDIALS: Use sunrealtype instead of realtype (#3632)
-- SYCL: Use get_multi_ptr instead of get_pointer (#3630)
-- Plotfile Tools: GPU support (#3626)
-- solve_cg: use linop.make instead of MF constructor (#3627)
-- CArena: shrink_in_place and operator<< (#3621)
-- solve_bicgstab: use linop.make instead of MF constructor (#3619)
-- replace AMREX_DEVICE_COMPILE with AMREX_IF_ON_DEVICE and AMREX_IF_ON_HOST (#3591)
-- [Breaking] Prefix `amrex_` to each plotfile Tool (#3600)
-- FillRandom: Use MKL host API (#3536)
-- use hipPointerAttribute_t.type as HIP is removing hipPointerAttribute_t.memoryType (#3610)
# 23.11
-- Give FlashFluxRegisters ways to accumulate data in registers (#3597)
-- `AMReXBuildInfo.cmake`: AMReX_DIR (#3609)
-- update doc for amrex::Abort on GPU (#3605)
-- Add runtime particle components to HDF5 wrapper (#3596)
-- Windows: Fix Installed AMReXBuildInfo.cmake (#3606)
-- Print AMReX version at the beginning of Initialize (#3604)
-- Install Move Tools to `shared/amrex` (#3599)
-- Revert "Add ability for GCC 8 in CMake to build fgradient which uses std::filesystem" (#3601)
-- Avoid std::filesystem (#3602)
-- Fix Assertion in MLEBNodeFDLaplacian (#3594)
-- Fix a memory "leak" in VisMF's persistent streams (#3592)
-- RealVect Static: Export (#3589)
-- change MaxCnt from 4 to max(4,max_level+1) for how many iterations we… (#3588)
… allow in creation of the initial grid hierarchy
-- Add Bittree CI (#3577)
-- BCType::ext_dir_cc (#3581)
-- Disable CCache in Windows CIs (#3566)
-- Fix ICC CI by Freeing up Disk Space (#3583)
-- Docs: Link pyAMReX (#3582)
-- NodeABecLaplacian: Reuse (#3579)
-- simplify how 2d surface integrals are computed (#3571)
-- Adding bittree interface to improve regridding performance in octree mode (#3555)
-- MLNodeABecLaplacian (#3559)
-- Fix Boundary Centroid in a Corner Case in 2D (#3568)
# 23.10
-- Bugfix typo in AMReX_SundialsIntegrator.H Nvar vs NVar, the
declared/used variable is NVar (#3573)
-- Code Spell (#3563)
-- Add Fortran interface for average_down_faces (#3553)
-- PureSoA: Disable AoS Access (#3290)
-- Another terrain fix for MPI (#3557)
Fix Increment, OK, and EnforcePeriodicWhere for terrain-fitted particles. (#3556)
-- Added cvode functionality to SUNDIALS integrator (#3436)
-- ParmParse::addfile needs Init (#3440)
-- Make the same changes to ApplyInitialRedistribution as to ApplyMLRedistribution (#3554)
-- Reset EB Fab Type (#3552)
EB Data outside domain (#3549)
-- We weren't defining cent_hat out far enough (#3548)
-- Add Fortran interface for FillCoarsePatch for face variables (#3542)
-- print_state/printCell: Make it work without managed memory (#3543)
-- FillPatch Fortran Interface: Fix incorrect size of Vector<BCRec> (#3546)
-- ReduceOps: reset result readiness flag (#3545)
-- Fix Fortran interface for FillPatch for face variables (#3541)
-- Support multiple CUDA architectures at compilation (#3535)
-- Add Kestrel machine and remove Rhodes machine from Make.nrel (#3533)
-- Explicitly flush when writing to the terse run log (#3532)
-- Missing header in AMReX_GpuComplex.H (#3531)
-- Add global domain id offset to conduit wrapper (#3524)
# 23.09
-- Fix InitRandomPerBox for 1D & 2D (#3527)
-- Add ability for GCC 8 in CMake to build fgradient which uses std::filesystem (#3523)
-- Fix: Include Guard 1D for MLPoisson (#3528)
-- Workaround for Intel compiler classic (#3526)
-- Constness in buildInfo: num_modules (#3522)
-- MLABecLaplacian: Tweak kernel fusing (#3521)
-- UniqueString tweak (#3520)
-- faverage fix (#3519)
-- Empty level fix (#3517)
-- Simplify filterParticles Kernel (#3510)
-- Generalize particle-to-cell assignment function (#3499)
Follow-on to 3499 (#3514)
ParticleLocator: Make Assignor optional template parameter (#3515)
-- GPU Launch Min Blocks (#3503)
-- Remove unsafe std::forward (#3513)
-- Fix Bug in FaceLinear Interpolater (#3483)
-- Add test on whether we are in the valid box when updating drho_as_crs… (#3506)
-- Fix backtrace nullptrs (#3505)
-- Skip ubsan lib on OSX (#3504)
-- SYCL: Add table of GNU Make config vars to docs (#3400)
-- Fix: Backtraces will NULL Addresses (#3502)
-- Update gpu elixir and async array synchronization for sycl (#3498)
-- SundialsIntegrator: Fix memory deallocation (#3501)
-- FillRandom & FillRandomNormal (#3500)
-- Update position in 2nd pass for tracer advect with Ucc. (#3496)
-- Move use of bcrec back onto GPU (#3494)
-- fix bug in StateRedist and add multi-level functionality for FluxRedi… (#3491)
-- fgradient: A new plotfile tool for computing gradient (#3490)
-- CI: Remove redundancy in nvcc dependencies files (#3387)
-- CMake: HIP Debug with -O1 (#3487)
-- Fix overflow in ParallelFor(Long n, ...) (#3489)
-- Adjust build for upstream Mpich and OpenMPI modules on Perlmutter. (#3486)
-- CArena: Implement alloc_in_place (#3426)
-- Clang-Tidy: Add more checks (#3466)
Fix a bug in #3466 (#3485)
-- Option to force regrid level zero (#3484)
-- Fix typo introduced in PR 3452 (#3482)
-- Clang-Tidy changes in Src/LinearSolvers (#3475)
-- Update FluxRedist and comments for StateItracker (#3481)
-- Clang-Tidy changes in Src/EB (#3473)
-- Clang-Tidy changes in Src/Boundary (#3471)
-- Clang-Tidy changes in Src/F_Interfaces (#3474)
-- Clang-Tidy changes in Src/Particle (#3476)
-- Clang-Tidy changes in Src/Extern (#3472)
-- Clang-Tidy changes in Tests (#3477)
-- Clang-Tidy changes in Tools (#3478)
-- Change the default value of The_Pinned_Arena release threshold (#3479)
-- Handle ThetaGPU in GNU make system (#3469)
-- Clang-Tidy changes in Src/AmrCore (#3468)
-- Clang-Tidy changes in Src/Amr (#3467)
-- Fix a bug in EB tensor solver's cross term (#3465)
-- Add misc-misplaced-const check to clang-tidy CI test (#3464)
-- Suppress implicit return warnings with nvcc (#3463)
-- Silence "unreachable loop" warning for GPU builds (#3462)
-- PlotFileUtil: Add Direct Includes (#3446)
# 23.08
-- Fix a bug in AmrMesh::ChopGrids (#3460)
-- Remove use of managed memory from TracerParticleContainer::TimeStamp (#3457)
-- Mac Arm64 Architecture fpe handling (#3447)
-- SYCL: Remove Workaround no longer needed (#3455)
-- SENSEI: SoA Particle Support (#3349)
-- Warn if USE_GPU_RDC=TRUE when HIP_SAVE_TEMPS=TRUE (#3454)
-- SYCL: Allocate 3/4 of total global memory by default (#3431)
-- GPU Assignment (#3382)
-- call_f refactor (#3452)
-- HDF5 bug fix for vol-async and compression (#3451)
-- Add second template parameter to other AoS for swap (#3450)
-- Refactor call_f in ParticleTransformation and WriteBinaryParticleData
to use constexpr if (#3448)
-- Fix this version of WritePlotFile to use SuperParticle, as expected by
WriteBinaryParticleData (#3449)
-- PODVector: Add a Missing STL Include (#3445)
-- Disable Managed Memory for The_Arena by default. (#3438)
-- SYCL RelWithDebInfo Build: Add -g1 (#3429)
-- Clang Tidy: +modernize-use-using (#3420)
-- Intel CI: Update Warning Flags (#3443)
-- In MLEBABecLap::compGrad, add missing call to addInhomogNeumannFlux (#3441)
-- Doxygen: SoA Get[Real/Int]Data (#3439)
-- ParmParse: Line Continuation (#3437)
-- SYCL: Get Pointer Type (#3434)
-- SYCL: UUID (#3432)
-- Re-Enable FPE Trap for SYCL (#3430)
-- Memory Efficient AoS Particle Sorting (#3427)
-- Use MPI_IN_PLACE (#3428)
-- PODVector Updates (#3425)
-- generalize interpolaters to not need or use extra values in a direction
for which the refinement ratio is 1 (#3415)
-- Fix Fortran module installation (#3411)
-- Fix allocateSlice for EB (#3391)
-- Update Intel compiler installation (#3423)
-- Improve comments and documentation on FaceDivFree Interpolater. (#3422)
-- Add the option to throw an exception on MLMG failure rather than aborting (#3424)
-- Make ReduceData::value safer (#3421)
-- Use atomic load in SYCL version of the single-pass scan (#3419)
-- GPU: Add Device::deviceVendor() function and fix #3416 (#3418)
-- New feature in EB: Add regular coarse levels (#3414)
-- add access function for EBFactory (moved out of IAMR) (#3417)
-- DataServices: Qualify math functions with `std::` namespace specifier (#3406)
-- Update CleanUpCache workflow (#3403)
-- Add some profilers to AmrLevel and FillPatcher (#3402)
-- Update the clang-tidy/ccache script (#3399)
-- Update Git workflow in CONTRIBUTING.md (#3397)
-- move redist into amrex (#3378)
-- Amr: Add printing of simulation time (#3392)
-- Add function for setting growth factor (#3394)
-- Updates Ascent Github Actions CI to use 0.9.2 (latest release)
# 23.07
-- Allow users to change the default vector growth strategy (#3389)
-- Communications arena implementation (#3388)
-- CI: oneAPI SYCL for AMD GPUs (#3341)
-- GPU: Always deallocate gpu_rand_state in Finalize() (#3384)
-- Hypre ILU options (#3381)
-- Amr Class: Synchronization of StateData's Time (#3375)
-- EB 2D: Fix levelset on nodes adjacent to covered edges (#3370)
-- Add workflow for oneAPI SYCL on Nvidia GPUs (#3360)
-- CMake: Enforce >= C++17 for ROCm (#3355)
-- Use device arena for the_fa_arena when activating GPU-aware MPI (#3362)
-- Coverity Scan (#3361)
-- CMake: AMReX_TEST_TYPE (#3357)
-- CMake: Enable AMReX_PARTICLES by default (#3358)
-- Add AMReX Apps to CI (#3348)
-- Make sure amrex::Long is wider than int. (#3345)
-- Particle Ids: Add int Constants (#3338)
-- CI: Clang CUDA (#3184)
-- Reinforce __CUDACC__ conditionals w/ AMREX_USE_CUDA (#3331)
-- CMake: Link option when HIP is a language (#3335)
# 23.06
-- Implement Checkpoint, Restart, and Plotfile for pure SOA (#3332)
-- Clang: -Wno-null-conversion for Lexer (#3333)
-- Fix Pure SOA RedistributeGPU: size from ptile, not the AoS (#3330)
-- cleaning and fixes for PureSoA ParticleTile (#3327)
-- RealBox: Accept RealVect Setters (#3328)
-- Port InitRandom for pure SoA (#3325)
-- FillBoundary for Spherical Coordinates (#3286)
-- Fix: AMReXConfig.cmake Multi-Dim (#3324)
-- HypreSolver: a new interface for Hypre (#3269)
-- Fix Tests/EB_CNS in 2D (#3323)
-- Fix CodeQL warnings (#3318)
-- Add get/set of AMRErrorTagInfo in AMRErrorTag (#3317)
-- GNU Make: allow skipping paths when running clang-tidy (#3316)
-- Multi-Dim Buildsystem Support (#3309)
-- GNU Make: use CLANG_TIDY_CONFIG_FILE if it's set (#3315)
-- Refactor Parser (#3265)
-- Enable binning for ParticleTileData (#3307)
-- ParticleTile: More SoA Updates (#3305)
-- HIP Debug Build (#3311)
-- Run PODVector::push_back on GPU (#3308)
-- ParticleInit: Implicit Int Float Conversion (#3304)
-- More constexpr if for pure soa in RedistributeCPU (#3299)
-- MLEBNodeFDLaplacian: Implement the alpha term (#3301)
-- Fixing the ParIter numParticles functions for pure SOA (#3303)
-- Add .mailmap (#3295)
-- Implement StructOfArray::empty() and ParticleTile::empty() for pure SoA (#3296)
-- port the old BoxLib faverage tool to AMReX (#3293)
-- GNU Make: add -pthread for HIP (#3294)
-- Github Cache: Path and Hypre (#3288)
# 23.05
-- Support SoA-Only Particles (#2878)
Conduit: Update ParticleTile API (#3260)
Fix default template parameter for ParConstIter (#3262)
Update SortParticlesForDeposition for pure SoA (#3277)
Implement increment for pure SoA (#3278)
Fix RealVect version of pos() for pure SoA (#3283)
Fix increment for pure SoA (follow on to #3278) (#3284)
-- handle divide by 0 in signed distance function (#3279)
-- Work-Around: CUDA 12.1 Non-Default Codelines (#3275)
-- CMake: Fix CUDA Options Order (#3274)
-- Fix bug in EBNodeFDLap (#3271)
-- update ci to use ascent 0.9.1 (#3266)
-- Add powi function in AMReX_Math.H (#3251)
-- update hiprand header path (#3252)
-- Installation using configure: Forgot to install Parser headers (#3249)
-- ParticleTileData: No Restrict in Storage (#3245)
-- CI: Retry Apt Repos (#3242)
-- Silence SWFFT (#3240)
-- Support complete elliptic integrals of 1st and 2nd type in Parser (#3225)
-- Rework handling of roundoff domain extent (#3199)
Fix periodic boundary bug in #3199 (#3243)
Fix Roundoff Domain (#3247)
Roundoff errors in computeRoundoffDomain (#3255)
Ensure that particles are always < rhi after applying periodic bcs. (#3263)
-- Fix: queryAdd for resizing vectors (#3220)
# 23.04
-- Speedup clang tidy (#3219)
-- Use ccache in Github Actions (#3218)
-- Clang-tidy fixes
#3227, #3224, #3222, #3206, #3203, #3202, #3201, #3200, #3197, #3190, #3188, #3176
-- bug fix in creating EB from STL files (#3223)
-- Fix bug in MLEBABecLap getEBFluxes(). (#3217)
-- Add build option for Intel SYCL AOT GRF mode (#3173)
-- SYCL sub-group size (#3180)
-- Warning about CPU core oversubscription (#3211)
-- Fix issues in ParticleContainerBase (#3208)
-- Add assert that we are not inside threaded region when InitRandom is called. (#3204)
-- Sorting for faster current deposition (#3198)
-- Update SUNDIALS NVector constructors (#3165)
-- ReduceToPlane (#3187)
-- ParticleContainer: Resize runtime components (#3186)
-- SYCL: Tweak #3164 and switch to multi_ptr for sincos (#3185)
-- Fix race condition with TinyProfiler for memory (#3169)
# 23.03
-- GNU Make: Allow customizing tmp_build_dir (#3177)
fix recently introduced tmp_build_dir build bug (#3179)
-- GNU Make: Allow choice of Intel compiler variant (#3175)
-- CMake: Parallel HDF5 Detection (#3170)
-- TableData: Relax the static assertion (#3174)
-- SYCL: Group and subgroup size (#3172)
-- Add Make.local-pre to gitignore (#3171)
-- New functions for getting data in cell or line. (#3166)
-- SYCL: Optimization of small reduction (#3167)
-- amrex::Math: No longer need to use sycl math functions (#3164)
-- gitignore: Editors & IDEs (#3163)
-- SYCL Device Info (#3161)
-- SYCL AOT: Fix warning (#3159)
-- GNU Make: make it an error if intel gpu arch for aot is unknown (#3157)
-- Update Build Systems for oneAPI (#3123)
SYCL: Fix AOT (#3155)
-- CI: Add sundials (#3153)
-- Add static_assert to Mpi_typemap<GpuComplex> (#3154)
-- SUNDIALS: Replace SUNDIALS math macros with std math functions (#3151)
-- Fix case where a norm is 1e-15 but not technically zero (#3149)
-- Fix bug in async IO for particles (#3150)
-- DPCPP -> SYCL (#3140)
-- Add MPI support to GpuComplex (#3148)
-- GNU Make: Add support for Intel LLVM compiler in CPU builds (#3126)
-- SYCL: Fix the order of destruction (#3146)
-- Adjust subgroup size for Intel GPUs (#3139)
-- Runtime parameters for Signal handling controls (#3125)
-- FillPatcher: Update interpolation in time (#3106)
-- AmrLevel::FillPatch: Abort if grids are not properly nested for GPU or EB (#3098)
-- Fix FabArray::shift (#3147)
-- Fix nl test (#3142)
-- Fix bug in Device::Finalize: Forgot to clear streams (#3143)
-- Add a compute face-centered velocity gradient in MLEBTensor (#3133)
-- Test: Reinit AMReX (#3141)
-- Functional: Less -> Minimum, Greater -> Maximum (#3138)
-- Profile memory allocations of the CArena using TinyProfiler (#3105)
Fix #3105: missing include (#3134)
Initialize TinyProfiler earlier only for memory (#3137)
-- PODVector: Add some stream synchronization (#3130)
-- SENSIE CI: run on ubuntu-20.04. 18.04 is deprecated. (#3131)
-- NeighborParticles: memcpy -> memcpy_async (#3129)
-- Rename AMReX_CUDA_MAX_THREADS to AMReX_GPU_MAX_THREADS (#3115)
-- CI: NVHPC 23.1 (#3122)
NVHPC: CUDA (#3124)
-- NVHPC: OpenMP Atomic Capture Fixed (#2378)
-- oneAPI: Work around compiler bug (#3121)
-- Multi-grid NeighborList GPU Sync (#3120)
-- Modify the neighbor particles test to also test selectActualNeighbors. (#3118)
-- Remove Atomic::Inc and Dec (#3117)
# 23.02
-- update github actions to use ascent 0.9.0 release (#3114)
-- CMake 3.18+: Stay OLD CUDA_ARCHITECTURES Policy (#3112)
-- OpenBCSolver: Fix reuse (#3111)
-- CMake: Fix AMD Flags for ROCm 5.5 and Bump cmake minimum version to
3.18 (#3107)
-- Check component and derive names for `canDerive` and `get` (#3109)
-- CMake clean up (#3100)
-- Replace sprintf with snprintf to fix compiler warnings (#3108)
-- ParmParse: support nan and inf (#3101)
-- CMake: add offload linker option --whole-archive for ROCm hipcc (#3097)
-- SinCos: AppleClang Fix (#3094) (#3096)
-- CMake: Make hypre and PETSc available only if it's not 1D. (#3093)
-- introduce amrex code of conduct (#3092)
-- SYCL: Reinforce device compilation preprocessor conditionals (#3090)
-- New knapsack function to reduce the cost of data movement in load
balancing (#3079)
-- GPU single stream region and no sync region (#3073)
-- Check for small cell before checking for multi-cut (#3088)
-- Improve AmrMesh::ChopGrids (#3081)
-- Add extra check for multicut cell (#3087)
-- Polydisperse neighbor search algorithm (#3060)
-- GPU UUID and Arena initial size (#3085)
-- Use IsCallable to detect if F is callable (#3080)
-- GNU Make: No need to do GCC version check for make clean etc. (#3084)
-- Mlebabeclap aniso (#2640)
# 23.01
-- amrex::fillAsync (#3076)
-- CI: Ascent (#3078)
-- Add forward declarations for class template friends (#3077)
-- Update GNU Make file for OLCF (#3070)
-- HIP: amdgpu-target -> offload-arch (#3069)
-- GPU kernel fusing in MLPoisson (#3071)
-- Docs: Sync Before Comms (#3075)
-- Remove deprecated SYCL declaration (#3074)
-- Change the type of DeriveRec::DeriveBoxMap to std::function (#3068)
-- Add CodeQL Scanning (#3059)
-- Remove old python scripts for releasing (#3066)
-- Plotfile Reader: Allow multi-word variable names (#3067)
-- Fix FPE in FillPatcher for RK (#3065)
-- Fix: Shared CMake builds w/ `AMReX_BUILD_SHARED_LIBS` (#3057)
-- Add PETSc CI (#3049)
-- remove plotsinglevar.py (#3063)
-- Remove old python build scripts from Castro / Maestro (#3064)
-- Add math functions to amrex::Math (#3008)
-- remove some astro-specific python routines (#3062)
-- Gpu Streams: Performance Tuning (#3058)
-- MLMG: template (#3035)
-- Add Hypre CI (#3048)
-- Print host name in backtrace files (#3054)
# 22.12
-- SYCL: Remove floating-point specialisations for atomic adds (#3050)
-- Template average down (#2980)
-- fix compilation of RichardsonConvergenceTest (#3046)
-- Refactor Boundary Registers (#3028)
-- Fix Multi-Level Open BC Solver (#3032)
-- Template average_down_faces (#3040)
-- Add FabArray::LocalCopy and LocalAdd (#3043)
-- FabArray::sum (#3041)
-- amrex::Any::hasValue() (#3025)
-- Make YAFluxRegister template (#3030)
-- FabArray::norminf (#3039)
-- amrex::Dot (#3042)
-- template FabArray::Saxpy, Xpay and LinComb (#3044)
-- Use std::max when coarsening a TagBox to preserve TagBox::SET values (#3045)
-- Update for oneAPI 2023 (#3024)
-- min/max- and linear combination-preserving interpolater (#3020)
-- template Xpay (#3031)
-- CMake: AMReX_BUILD_SHARED_LIBS (#3013)
-- Fix mis-matched array type that broke mixed-precision restarts (#3026)
-- Add amrex::demangle for demangling C++ names (#3022)
-- Add more functionalities to TypeList (#3021)
-- Add muller to NERSC machines (#3019)
-- Fix -lquadmath in GNU Make (#3018)
-- Fix EB tensor solver's boundary when EB is tilted. (#3002)
-- Add -Wmissing-include-dirs to gcc warning flags (#3012)
-- A better fix for the PETSc compilation issue (#3011)
-- Replace all `sprintf` by `snprintf` (#3010)
-- Use std::less for comparison of pointers (#3007)
-- Add YAFluxRegister::getFineData (#3004)
-- C++17 Transition (#2992)
# 22.11
-- MPI Reduce for ValLocPair (#3003)
-- `FabArray::isDefined` (#2997)
-- Make The_Device_Arena non-managed (#2998)
-- Add alias template Gpu::NonManagedDeviceVector (#2999)
-- Pre- and Post-interpolation hook interface (#2991)
-- Add user defined BC types (#2995)
-- Add BCRec::set for convenience (#2993)
-- ParallelFor with compile time optimization of kernels with run time parameters (#2954)
-- 2D RZ solver for WarpX: Arbitrary coefficient (#2986)
-- Runge-Kutta support for AMR (#2974)
-- Fourth-order interpolation from fine to coarse level (#2987)
-- Fix EB data inconsistency when fixing small cells and multiple cuts (#2943)
-- MFIter::Finalize (#2983, #2985, #2988)
-- Fix MLMG::getGradSolution & getFluxes for inhomogeneous Neumann and Robin BC (#2984)
-- MLLinOp::postSolve (#2981)
-- add templating for the cell bilinear interpolators (#2979)
-- FillPatcher class (#2972)
-- Remove sycl namespace alias (#2971)
-- Fix Tensor Solver BC (#2930)
-- Disable host device for macros for SYCL/DPC++ (#2969)
# 22.10
-- Solve an issue with particles async IO when having runtime added variables (#2966)
-- Fix int overflow in amrex::bisect (#2964)
-- Fix MLEBNodeFDLaplacian bottom solver (#2963)
-- make tagging routines EB_aware (#2962)
-- Volume weighted sum (#2961)
-- CellData: data in a single cell (#2959)
-- Quartic interpolation for cell centered data (#2960)
-- Add GPU-compatible upper bound and lower bound algorithms to AMReX_Algorithm (#2958)
-- add option for makebuildsources to specify the style arguments for 'git describe'. (#2957)
-- Add roundoff_lo corresponding to roundoff_hi for domains that don't start at 0 (#2950)
-- Add template parameter to ParallelFor and launch specifying block size (#2947)
-- Byte spread fixes (#2949)
-- CMake: HIP_PATH from ROCM_PATH (#2948)
-- Fix: Make Finalize->Initialize->F->I->... Work (#2944)
-- Changes for Cray & Clang (#2941)
-- Link to cublas when using CUDA and Hypre (#2933)
-- HIP: use coarse grained host memory (#2932)
-- EB checkpoint files (#2897)
-- Fix: Loading Files Again (#2936)
-- Check if boundary particles container has been created before clearance. (#2935)
-- SYCL: Replace deprecated atomic types and operations (#2921)
# 22.09
-- Preserve neighbor particles when sorting particles. (#2923)
-- Scope of NonLocalBC::ParallelCopy (#2922)
-- Open Boundary Poisson Solver (#2912)
Add hypre as an option for OpenBCSolver (#2931)
-- Fix OOB access of ref ratio on HDF write header (#2919)
-- Add Polaris to GNUMake (#2908)
-- Export GpuDevice Globals (#2918)
-- enable LinOp to use the right Factory (fixes moving geometry problem) (#2916)
-- Use 1 atomic instead of two per item in DenseBins::build (#2911)
-- [SYCL] Remove amrex::oneapi and update deprecated device descriptors (#2910)
-- Add: `MultiFab::sum_unique` (#2909)
-- In MLMG::mgFcycle, assert that for EB the linop is cell-centered. (#2905)
-- EB: Add Fine Levels (#2881)
-- Add rpath to lib64 for ZFP. (#2902)
-- change data types from double to amrex::Real, and thus we can use single precision for the hypre IJ interface (#2896)
-- MPMD Support (#2895)
-- MLMG interface (#2858)
# 22.08
-- Let `selectActualNeighbors` return right after starting if there are no
particles for communication. (#2886)
-- Add Comm Sync to Redistribute (#2891)
-- Multi-materials and derived variable output (#2888)
-- Fix host / device sync bug in PODVector (#2890)
-- MinLoc and MaxLoc Support (#2885)
-- HIP: Remove the call to hipDeviceSetSharedMemConfig (#2884)
-- Add Frontier to GNU Make (#2879)
-- Add option to derefine to AMRErrorTag (#2875)
-- Fix the segmentation fault in selecting actual neighbor particles. (#2877)
-- Workaround to bypass issue observed at very large scale with Fujitsu MPI (#2874)
`TagBoxArray::collate`: Fujitsu Clang (#2889)
-- Allow zero components MultiFab and BaseFab (#2873)
-- New EB optimization parameter: eb2.num_coarsen_opt (#2872)
-- SENSEI 4.0: Fix Build for Particles (#2869)
-- Cache the neighbor comm tags for the CPU implementation of fillNeighbors. (#2862)
-- Remove some hard checks in check_mvmc for 3D (#2864)
-- Carry over fix for ngbxy.smallEnd typo (#2868)
# 22.07
-- Adding control APIs and namespacing for core algorithm paths like SpGEMM, SpMV, and SpTrans. (#2859)
-- update the SENSEI in situ coupling for SENSEI v4.0.0 (#2785)
-- Write runtime attribs to checkpoints on GPUs (#2856)
-- Fix gnu make on Crusher for mpi_gtl_hsa (#2857)
-- CMake: FindDependency CUDAToolkit (#2849)
-- NERSC Programming Environment prototype (#2848)
-- GNU Make: No need to query mpif90 if Fortran is not used. (#2852)
-- Remove f90doc (#2851)