diff --git a/notebooks/invivo_python.ipynb b/notebooks/invivo_python.ipynb index 7d4ca4c..2063305 100644 --- a/notebooks/invivo_python.ipynb +++ b/notebooks/invivo_python.ipynb @@ -116,11 +116,11 @@ "## Visualize interactive KDE ridgelines \n", "\n", "* In the manuscript, `invivo3` was selected for visualization. You can select `invivo1` and `invivo2` as well. \n", - "* In the `WM`, sampN was `37000`\n", - "* In the `GM`, sampN was `20000`\n", - "* For metric `T1` `lowlim: 0` and `uplim: 2.5` (WM)\n", - "* For metric `MTR` `lowlim: 35` and `uplim: 70` (WM)\n", - "* For metric `MTsat` `lowlim: 1` and `uplim: 8` (WM)" + "* In the `wm`, sampN was `37000`\n", + "* In the `gm`, sampN was `20000`\n", + "* For metric `T1` `lowlim: 0` and `uplim: 2.5` (wm)\n", + "* For metric `MTR` `lowlim: 35` and `uplim: 70` (wm)\n", + "* For metric `MTsat` `lowlim: 1` and `uplim: 8` (wm)" ] }, { @@ -129,10 +129,10 @@ "metadata": {}, "outputs": [], "source": [ - "fig = plot_ridgelines('invivo3',sessions,'T1','WM',colors,sides,37000,0.5,2)\n", - "#plot_ridgelines('invivo3',sessions,'MTR','WM',colors,sides,37000,35,70)\n", - "#plot_ridgelines('invivo3',sessions,'MTsat','WM',colors,sides,37000,1,8)\n", - "#plot_ridgelines('invivo3',sessions,'T1','GM',colors,sides,20000,0.5,2)\n", + "fig = plot_ridgelines('invivo3',sessions,'T1','wm',colors,sides,37000,0.5,2)\n", + "#plot_ridgelines('invivo3',sessions,'MTR','wm',colors,sides,37000,35,70)\n", + "#plot_ridgelines('invivo3',sessions,'MTsat','wm',colors,sides,37000,1,8)\n", + "#plot_ridgelines('invivo3',sessions,'T1','gm',colors,sides,20000,0.5,2)\n", "\n", "plot(fig, filename = 'fig.html')\n", "display(HTML('fig.html'))"