diff --git a/docs/markdown/pipelines/pipeline_releases.md b/docs/markdown/pipelines/pipeline_releases.md index 7f882eb..961768e 100644 --- a/docs/markdown/pipelines/pipeline_releases.md +++ b/docs/markdown/pipelines/pipeline_releases.md @@ -6,13 +6,13 @@ These versions will be revised periodically and tested in our infrastructure bef ## Pipeline releases to be used at QBiC -| Analysis type | Pipeline | Use version | -| ------------------ | --------------------------------------------------------------------- | :---------: | -| RNAseq | [nf-core/rnaseq](https://nf-co.re/rnaseq/3.12.0) | 3.12.0 | -| RNAseq DE analysis | [qbic-pipelines/rnadeseq](https://github.com/qbic-pipelines/rnadeseq) | 2.3 | -| WGS / WES | [nf-core/sarek](https://nf-co.re/sarek/3.1.2) | 3.1.2 | -| HLAtyping | [nf-core/hlatyping](https://nf-co.re/hlatyping/1.2.0) | 1.2.0 | -| 16S amplicon | [nf-core/ampliseq](https://nf-co.re/ampliseq/2.1.1) | 2.1.1 | +| Analysis type | Pipeline | Use version | +| --------------------- | ------------------------------------------------------------------------- | :---------: | +| RNAseq | [nf-core/rnaseq](https://nf-co.re/rnaseq/3.12.0) | 3.12.0 | +| RNAseq DE analysis | [qbic-pipelines/rnadeseq](https://github.com/qbic-pipelines/rnadeseq) | 2.3 | +| WGS / WES | [nf-core/sarek](https://nf-co.re/sarek/3.1.2) | 3.1.2 | +| HLAtyping | [nf-core/hlatyping](https://nf-co.re/hlatyping/1.2.0) | 1.2.0 | +| 16S amplicon | [nf-core/ampliseq](https://nf-co.re/ampliseq/2.1.1) | 2.1.1 | | Shotgun metagenomics | [nf-core/mag](https://nf-co.re/mag/2.1.1) | 2.1.1 | | BCR / TCR repseq | [nf-core/airrflow](https://nf-co.re/airrflow/2.4.0) | 2.4.0 | | CAGEseq | [nf-core/cageseq](https://nf-co.re/cageseq/1.0.2) | 1.0.2 |