From 8af078d83749ffb94d1bc96db29769e2725b260f Mon Sep 17 00:00:00 2001 From: qclayssen <37511834+qclayssen@users.noreply.github.com> Date: Mon, 5 Apr 2021 21:50:21 +0200 Subject: [PATCH] Update README.md --- README.md | 22 ---------------------- 1 file changed, 22 deletions(-) diff --git a/README.md b/README.md index 4915c34ff..0acbaa7bf 100644 --- a/README.md +++ b/README.md @@ -29,28 +29,6 @@ If a recompilation is needed please use to purge all compiled files: This project is provided with a tool to generate some naive data set. This tool fit with a logistic regression and produce a data set of given sizes with a given number of causal SNPs. This operation is performed by simu_naive.py. -### Prerequisite, generation of right virtual environment -These steps are done if installation_of_project.sh was used. -Some packages are required to run this tool. List of them is provided with needed version in environment.yml or environment.txt file. In order to generate a virtual environment where simu_naive.py can be executed please follow next steps. - -For this step conda is needed, please follow instructions from anaconda documentation to get it installed. If conda is installed please execute this line to generate an environment called projet_c: - - conda env create -f ./environment_to_execute_python/environment.yml - -If virtualenv if prefered and is not installed. Please use following lines: - - pip install virtualenv - virtualenv -p /usr/bin/python3.6 projet_c - source projet_c/bin/activate - pip install -r environment.txt - deactivate - - - -Following this, activate this environment and execute simu_naive with arguments: - - source activate projet_c ./simu_naive.py -p simu_naive -f 1 -v 28 -pa 2000 -o toy_dataset -c 2000 -s 2 - source deactivate