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main.py
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main.py
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from .config import Config
from .utils import cmn, json2, logger
from . import validate_sample
from . import validate_experiment
from . import prevalidate
from . import sraparse
import os
def main(args):
if args.has('-prevalidate') or args.has('-gendoc'):
return prevalidate.main(args)
base = os.path.dirname(os.path.realpath(__file__))
if not args.has('-config'):
if not args.has('-dev'):
args.add_key('-config', "{0}/config.json".format(base))
else:
args.add_key('-config', "{0}/config-dev.json".format(base))
logger(str([args.keys, args.args()]) + '\n')
if not args.has('-out'):
logger('#__noOutFileGiven___\n')
return
if not args.has('-dbg') and (cmn.fexists(args['-out']) and not args.has('-overwrite-outfile')):
logger('#__outfile:{0} exists\n'.format(args['-out']))
return
#try:
if True:
if args.has('-extract'):
#import sraparse
return sraparse.SRAParseObjSet.extract_attributes_to_json(args.args(), args['-out'])
elif args.has("-test-sample"):
testargs = ["./examples/samples.xml", "-config:{0}".format(args['-config']), "-out:./examples/samples.versioned.xml"]
validate_sample.main(Config(testargs))
elif args.has("-sample"):
return validate_sample.main(args)
elif args.has("-experiment"):
return validate_experiment.main(args)
else:
raise NotImplementedError("#__unknownArguments__")
else:
#except Exception as err:
logger('#__unexpected__\n')
logger(str(err.message) + '\n')
if __name__ == '__main__':
main(Config.sys())