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COVID19_GeneSets.gmt
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COVID19_GeneSets.gmt
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COVID19-E protein host PPI from Krogan BRD4 BRD2 SLC44A2 ZC3H18 AP3B1 CWC27
COVID19-M protein host PPI from Krogan SLC30A7 AASS AAR2 SLC30A9 INTS4 SAAL1 ATP1B1 ANO6 YIF1A REEP6 GGCX REEP5 COQ8B TARS2 FAM8A1 RTN4 ATP6V1A TUBGCP2 TUBGCP3 AKAP8L FASTKD5 ETFA BZW2 PSMD8 ACADM PITRM1 STOM PMPCB PMPCA SLC25A21
COVID19-N protein host PPI from Krogan RBM28 UPF1 CSNK2A2 FAM98A DDX21 RRP9 MOV10 LARP1 G3BP1 CSNK2B G3BP2 SNIP1 PABPC4 RPL36 PABPC1
COVID19-Nsp1 protein host PPI from Krogan POLA1 POLA2 PRIM2 PRIM1 PKP2 COLGALT1
COVID19-Nsp10 protein host PPI from Krogan TIMM8B ZYG11B CUL2 AP2A2 GFER RBX1 THTPA GRPEL1 MAP7D1 PPT1 ELOB ELOC AP2M1 ERGIC1
COVID19-Nsp12 protein host PPI from Krogan CRTC3 PPIL3 USP54 MYCBP2 TCF12 TYSND1 AKAP8 LARP4B PLEKHA5 PRRC2B SBNO1 BCKDK PDZD11 ZNF318 UBAP2L UBAP2 RBM41 RIPK1 ZC3H7A SLU7
COVID19-Nsp13 protein host PPI from Krogan TLE5 CEP135 TLE3 TLE1 RDX CEP112 PDE4DIP HSBP1 CIT MIPOL1 CLIP4 CENPF NIN GOLGB1 HOOK1 GORASP1 TBKBP1 CEP43 GRIPAP1 CEP68 USP13 AKAP9 GCC1 GCC2 JAKMIP1 GOLGA3 C1ORF50 FYCO1 TBK1 PRKAR2B CNTRL GOLGA2 PRKAR2A CEP250 CDK5RAP2 CEP350 ERC1 NINL PCNT PRKACA
COVID19-Nsp2 protein host PPI from Krogan GIGYF2 SLC27A2 POR FKBP15 RAP1GDS1 EIF4E2 WASHC4
COVID19-Nsp4 protein host PPI from Krogan TIMM9 TIMM10B TIMM29 DNAJC11 IDE NUP210 TIMM10 ALG11
COVID19-Nsp7 protein host PPI from Krogan CYB5B RHOA RAB2A ACSL3 PTGES2 DCAKD MOGS DNAJC19 SCCPDH RAB10 GNB1 SELENOS AGPS RAB14 NDUFAF2 RAB18 RAB7A RAB1A RAB5C RALA MTARC1 NAT14 COMT HS2ST1 TOR1AIP1 CYB5R3 LMAN2 GNG5 FAM162A RAB8A QSOX2 SCARB1
COVID19-Nsp8 protein host PPI from Krogan ATE1 SRP19 MRPS27 MEPCE MRPS25 MPHOSPH10 NGDN DDX10 MRPS2 LARP7 SEPSECS MRPS5 AATF EXOSC8 HECTD1 SRP72 EXOSC5 NARS2 NSD2 SRP54 CCDC86 NOL10 EXOSC3 EXOSC2
COVID19-Nsp9 protein host PPI from Krogan NEK9 NUP214 GTF2F2 MIB1 DCAF7 FBLN5 SPART MAT2B NUP54 NUP62 NUP58 ZNF503 EIF4H NUP88 FBN1 FBN2
COVID19-Orf3a protein host PPI from Krogan SUN2 CLCC1 ALG5 ARL6IP6 HMOX1 TRIM59 VPS11 VPS39
COVID19-Orf8 protein host PPI from Krogan IL17RA TOR1A GDF15 CHPF2 GGH EDEM3 INHBE FBXL12 ERP44 COL6A1 NPC2 LOX SMOC1 HYOU1 ADAM9 MFGE8 DNMT1 FKBP7 ERO1B ITGB1 FKBP10 POGLUT3 PLEKHF2 POGLUT2 TM2D3 CHPF NGLY1 STC2 CISD3 PVR PLAT PLOD2 PCSK6 HS6ST2 FOXRED2 PLD3 POFUT1 ADAMTS1 OS9 EMC1 ERLEC1 NEU1 NPTX1 SDF2 SIL1 PUSL1 UGGT2
COVID19-Orf9b protein host PPI from Krogan PTBP2 BAG5 TOMM70 MARK1 DPH5 CSDE1 CHMP2A DCTPP1 SLC9A3R1 MARK3 MARK2
COVID19-Orf9c protein host PPI from Krogan ACAD9 TAPT1 NDFIP2 WFS1 ALG8 SLC30A6 BCS1L DPY19L1 ECSIT F2RL1 NDUFAF1 TMEM39B FAR2 RETREG3 ABCC1 PIGS NLRX1 NDUFB9 PIGO TMEM97 GHITM GPAA1 ERMP1 SCAP UBXN8 TMED5
COVID19-All 332 protein host PPI from Krogan ATE1 ACSL3 NGDN NUP214 MOGS PLEKHA5 NUP210 LARP7 NIN NUP98 CCDC86 TBKBP1 FAR2 GLA RETREG3 TARS2 NLRX1 RALA MYCBP2 AKAP9 CISD3 AKAP8 GHITM HS6ST2 DCAF7 EXOSC8 SRP72 EXOSC5 PSMD8 GNG5 STOM UBAP2L VPS11 NUP88 EXOSC3 EXOSC2 SIGMAR1 IL17RA AAR2 NDFIP2 ALG8 ATP6AP1 ALG5 INTS4 EDEM3 TOMM70 TYSND1 PRRC2B MOV10 GIGYF2 POR SPART GOLGB1 CSNK2B GORASP1 NOL10 PPT1 HYOU1 NDUFAF1 NDUFAF2 CEP68 MEPCE MPHOSPH10 NGLY1 GCC1 TMEM97 GCC2 RRP9 GOLGA3 LARP1 CYB5R3 TBK1 GRPEL1 PRKAR2B GOLGA2 NUP62 PRKAR2A ARL6IP6 CDK5RAP2 HMOX1 RPL36 GOLGA7 SIL1 PUSL1 PRKACA ACAD9 AASS RHOA UPF1 PTGES2 RDX TIMM29 TCF12 SIRT5 MRPS2 NUTF2 AP3B1 TRMT1 MRPS5 CENPF ECSIT UBAP2 PABPC4 PABPC1 COQ8B SLU7 CEP43 GRIPAP1 RAB7A ERGIC1 RAB5C SLC44A2 MTARC1 FASTKD5 IDE CSDE1 STC2 GPAA1 TIMM10 PCSK6 TOR1AIP1 AATF SBNO1 THTPA ERMP1 PITRM1 PDZD11 NEU1 CNTRL DPH5 SCAP UBXN8 QSOX2 RIPK1 ATP5MG TMED5 BRD4 ZYG11B MRPS27 BRD2 MRPS25 CSNK2A2 SAAL1 HSBP1 CIT ANO6 MIB1 MIPOL1 ERP44 CLIP4 DPY19L1 AGPS SMOC1 F2RL1 TMEM39B ARF6 ERO1B PIGS TIMM9 FKBP10 FKBP15 PIGO PRIM2 PRIM1 AP2A2 ZDHHC5 LMAN2 POFUT1 ACADM OS9 SRP54 HEATR3 RAB8A ELOB SDF2 ELOC NINL TLE5 TOR1A TLE3 PPIL3 RAB2A GDF15 TLE1 CEP112 LARP4B ALG11 GTF2F2 ATP1B1 YIF1A RNF41 RBX1 SELENOS ZNF318 PKP2 ADAM9 FKBP7 FAM8A1 RAB1A SLC27A2 CRTC3 POGLUT3 POGLUT2 CHPF PVR PLOD2 CWC27 JAKMIP1 BZW2 COMT FBLN5 CLCC1 EMC1 NSD2 CEP250 PMPCB NPTX1 PMPCA RAE1 PCNT NEK9 SLC30A7 SLC30A9 CHPF2 WFS1 SLC30A6 DCAKD INHBE TBCA SLC9A3R1 DNAJC19 SCCPDH TIMM10B GNB1 COL6A1 REEP6 GGCX REEP5 LOX DNAJC11 MAP7D1 CHMP2A MFGE8 DNMT1 FBN1 FBN2 SRP19 ATP6V1A TUBGCP2 USP54 TUBGCP3 CUL2 NAT14 PLAT SEPSECS C1ORF50 BAG5 G3BP1 FAM162A G3BP2 ZC3H18 MARK1 SNIP1 CEP350 MARK3 AP2M1 MARK2 WASHC4 GPX1 TAPT1 CYB5B SUN2 GGH POLA1 BCKDK POLA2 NPC2 NUP54 HOOK1 TRIM59 NUP58 DCTPP1 ATP13A3 EIF4E2 ABCC1 RTN4 NDUFB9 PLEKHF2 STOML2 RAP1GDS1 HS2ST1 PLD3 PTBP2 FYCO1 ERLEC1 ZNF503 EIF4H ZC3H7A MDN1 TIMM8B CEP135 FAM98A PDE4DIP DDX10 GFER BCS1L FBXL12 RAB10 IMPDH2 RAB14 RBM41 RAB18 RBM28 MTCH1 ITGB1 TM2D3 HDAC2 AKAP8L USP13 DDX21 ETFA FOXRED2 HECTD1 MAT2B NARS2 ADAMTS1 ERC1 SLC25A21 COLGALT1 UGGT2 SCARB1 VPS39
ACE2 Co-expressed genes from ARCHS4 SECTM1B AOC1 ARL14 BTNL2 BTNL1 ACSL5 BTNL4 TM4SF5 MYO7B BTNL6 MALL CYP2C66 GLOD5 CYP2C65 RBP2 2010003K11RIK ENPEP ASAH2 SLC5A1 2010106E10RIK BAIAP2L2 MS4A18 CHP2 MALRD1 MS4A10 ST3GAL4 SLC15A1 SLC6A19 NAALADL1 CYP4F14 H2-T3 IL22RA1 TMEM236 MEP1B CDHR2 CDHR5 CDH17 SLC27A4 CLRN3 VIL1 CYP3A13 SLC2A7 ANPEP PLS1 SLC5A4A GIMD1 CCL25 ACE APOA4 ISX SULT1B1 SLC7A9 DNASE1 THEMIS3 CLDN15 ADH6A IFI27L2B ADA ALPI SLC26A6 GUCY2C REG3A MTTP MOGAT2 SLC7A15 HNF4G KRT20 PTPRH GM8909 IGSF23 BTNL5-PS 9130409J20RIK CES2E NPC1L1 ERICH4 TM4SF20 SLC13A2 ANXA13 TM6SF2 FABP2 CLCA4A MYO1A MYO15B HKDC1 CLCA4B CLEC2H LCT SIS CLEC2E SMIM24 SLC28A1 TRIM31 TREH SLC5A12 MYRFL USH1C BTNL7-PS ENPP3 EPS8L3 ENPP7
ACE2 top 50 Geneshot AutoRIF TGFB1 ACE CMA1 AGTRAP SOX14 LNPEP AGT MID2 CRYGB CLCN6 LAP3 CRYGA CYP11B2 AGTR2 APLNR AGTR1 UTS2 CLEC4M REN CALM3 ENPEP ZNF274 RPL12 IGSF3 TMPRSS2 SWI5 NUP85 SCAP CTSD CPA2 SLC6A19 TMPRSS11A ATP6AP2 SLC6A18 RNLS MME SYVN1 ACE2 EHBP1 MAS1 ADAM17 COL4A3 MOB2 NOX4 THOP1 ITM2A NR3C2 SLC6A20 ANPEP RNPEP
ACE2 top 200 Geneshot AutoRIF ARCHS4 predictions ENTPD5 GLYCTK ENTPD8 ACSL5 SEPP1 TMEM82 MALL SLC5A9 XPNPEP2 RBP2 TRIM15 NBL1 ENPEP ADAMDEC1 SLC46A3 RETSAT VIPR1 TUBAL3 SLC23A1 ITLN2 SLC5A1 PRAP1 BAIAP2L2 CREB3L3 CUBN SLC6A19 ST14 CYP4F2 FLJ22763 ACE2 TCN2 MEP1B TDP2 MEP1A CES2 HHLA2 GBA3 SULT1A2 LGALS4 ANPEP SI TSPAN8 REG4 ZBTB7B CCL25 ACE SLC10A2 SEC16B ISX TMEM37 SLC7A7 SLC7A9 CLDN15 GIPC2 ALDOB C17ORF78 GUCY2C REG3A NR1I2 MTTP MOGAT2 MAOA ACY1 HNF4G GPT KHK KRT20 PTPRH HSD11B2 SLC22A18 HNF4A PCK2 PCK1 TM4SF20 TMEM176A DGAT1 KIAA2013 ANO9 NR1H4 GUCA2B GUCA2A FABP2 GAK FABP6 KCNQ1 AADAC NUCB1 PLCB3 FABP1 MTMR11 SLC28A1 DHRS11 LRRC19 TMEM54 PEPD FCGBP FCGRT DMBT1 FAM3B GPA33 ACADS SLC17A4 FBXW5 CDX2 UNC5CL DEFA5 CDX1 DEFA6 BTNL3 LRRC66 MUC3A SDCBP2 BTNL8 TMEM253 SLC9A3 CRYL1 DPEP1 PRR15L OTC ABCG2 SLC1A1 PBLD C1ORF115 CNDP2 CAPN5 NLRP6 CHP2 MALRD1 CEACAM20 MISP SLC39A5 C11ORF86 MGAM SLC15A1 TTC38 ESRRA MUC17 PHGR1 EPHX2 NAALADL1 CYP4F12 REEP6 CDHR2 CDHR5 CDH17 CLRN3 VIL1 CYP2C18 PLB1 AKR7A3 PDZD3 ADGRG7 MUC13 CLCA1 PLS1 GGT1 ACAA1 CYP2J2 VDR KCNJ13 APOA4 TMBIM1 ZZEF1 TMIGD1 FBP1 CPO FAM109A CYP3A4 AGPAT2 DPP4 TKFC ERICH4 UGT2A3 VILL SLC13A2 SLC36A1 AMN PPP1R14D UGT2B17 SLC13A1 TM6SF2 PFKL MYO1D CTDSP1 MYO1A TST MYO15B MGAT4B NAGS ACADVL TREH MVP SLC5A12 USH1C TPRN GNA11 HEPH MAPK3 EPS8L2 EPS8L3
ACE2 top 200 Geneshot AutoRIF Enrichr co-occurrence predictions RPS2P52 TAAR9 RSPH6A TAAR8 TEX35 TEX36 UNC93A TAAR1 TAAR2 POM121L4P PSG6 HOXBAS4 PPY2P SPATA19 OR6C3 OR5AK2 OR13J1 TEX47 OR1I1 SLC5A2 AKAP4 AQP2 GPR151 TTTY22 OR6B3 TEX11 TEX12 OR2J3 GDF2 TAS2R38 TAS2R39 TEX13B F13B OR6A2 WFDC10A ACTRT1 CRYAA ACTRT2 TSPYL6 OR1G1 WFDC5 TEX28 WFDC6 TP53AIP1 GALR3 GALR2 OR8D2 OR7A17 SMCO2 TMC2 PDHA2 GABRA6 OR1N2 TMCO2 OR1N1 SPAM1 PICSAR SLC7A9 ANKRD66 ANKS4B SLC22A9 OR3A3 OR3A2 TAS2R40 REG3A OR10H2 OR10H1 WFIKKN1 FTH1P18 GPR20 SNARI UMOD HIGD1AP11 SULT1C3 FAM221B OPN1LW TINAG OR1F2P AMELY TRBV102 OR8J1 OR10G3 GCGR TMEM270 OR1L4 PRSS37 OR1L3 GUCA2B FAM71E2 TMEM61 TERB1 GPR142 PRSS42 A4GNT GHRH SEMG2 ZNF575 PGLYRP4 PTH PGLYRP3 PTGER1 AFM CRYBA2 HOXD12 FAM170A RNF133 SEPT12 FBXW12 CRYBB2 CRYBB3 PRSS58 SNARA8 PRSS55 FAM215A OR4X2 SLC25A31 OR13C4 TBC1D29 AGRP OR1A2 OR1A1 PRSS47 H1FOO SNARC5 PRSS50 OR1Q1 TMEM247 TEKT3 SLC16A8 SLC25A41 OR51B6 RGS21 SMIM2IT1 FGF23 ODF4 SLC30A2 PGC TMEM239 RHPN2P1 REG1B FGF6 OR6Y1 SSX7 SSX5 ODF1 TGM6 PDZD9 TGM4 TRIM64 CRYGN OR1F1 ZNF252PAS1 TBC1D3P5 SYNGR4 SNARA13 CRYGD ADGRD2 CRYGB CRYGC SPACA3 SAXO1 SPEM1 ALPI OR10A4 OR10A6 PRAC2 HMGB4 ETDB TMEM202 ERICH4 OR2W1 GRK7 AQP12A PDILT FAM71C FAM71B TRIM40 GIF PTCRA TRIM42 UTS2R SLC13A1 TPD52L3 SLC4A9 SLFNL1 TBX10 ZP2 ZP4 OR1C1 RTP2 TREH CRX SPATA21 UROC1 TREML3P UBE2DNL OR1S2 TAS1R2 SPATA31E1 UGT1A7
SARS top 50 Geneshot AutoRIF MX1 PLA2G2D SARS CXCL10 SARS2 PPIA IRF3 RASA3 PPIG PPIH CLEC4M TRIM55 CLEC4G FCER2 VIT IFITM2 IFITM3 IFITM1 FGL2 TMPRSS2 GHITM DPP4 LRRC2 GNGT2 CTSL YWHAQ HIST1H1C TMPRSS11A STAT1 EDEM1 TRAF3 ISG15 IL17RD WARS2 ACE2 TOM1L2 FKBP1B FKBP1A PLP2 EIF3F FURIN COPB2 COPB1 RARS ENDOU TBK1 ANPEP SIX3 DEDD RPH3A
TMPRSS2 top 50 Geneshot AutoRIF ANXA3 ETV1 TMPRSS13 ETV4 SPINK1 ETV5 SHQ1 HOOK3 FAM72B TOP2B ST6GALNAC1 KLK2 MAST4 TMPRSS7 TMPRSS4 TMPRSS5 TMPRSS2 TMPRSS3 UAP1 KLK3 NDRG1 CHD1 SEC14L1 PES1 NT5C SPOP FAM71D SLC16A6 SH3BGR RNF24 TMEM65 HSPBAP1 TMPRSS11D TDRD1 RYBP AMACR ERG UMODL1 FOXA1 CRISP3 NCKAP5 SLC45A3 CANT1 PIGU PTEN CACNA1D ELK4 RSRC2 PMEPA1 NKX3-1
SARS 133 Literature-Associated Genes from Geneshot GeneRIF UBE2I MX1 SARS RUNX1 TICAM2 MAPK14 CXCL10 EEF1A1 PSMC6 PPIA CD209 CLEC4M PF4 CLEC4G TP53 RB1 RELA C11ORF74 IFITM3 CSF2 IFITM1 SERPINE1 FGL2 TNF RCHY1 EGFR CXCL16 IFNL3 CCND3 HOXA9 STAT6 IL12RB1 KPNA2 SMAD3 EGR1 APOBEC3G DDX58 ZCRB1 GOT1 PPBP HLA-C HLA-A ISG15 HLA-B NFKB1 TMPRSS11D EIF2S1 ACE2 MYD88 BCL2L1 ATF6 EZR IFNAR1 HLA-DRB1 PHB2 SPI1 VCP DDX5 DDX1 PHB ICAM3 CFP TBK1 UBB CLTRN HMOX1 IL12B CD14 ACE IL10 ANXA2 PLA2G2D SFTPD EIF2AK2 NMI TMEM173 OAS1 IL2 IL1A IL1B IL4 FCGR2A IL6 IRF3 IFNG PI4KB TLR4 FCER2 CXCL9 TMPRSS2 CXCL2 GPT HSPB1 DPP4 CXCL5 MAP1LC3A CASP6 THPO BDKRB1 CTSL CASP3 CD34 HLA-DQA2 MPP5 STAT1 NOS3 AHSG PKLR F2 POU5F1 F5 WARS2 IL17A KPNB1 ADAM17 KLF6 CANX NPIPB3 PTX3 MASP2 IFNA1 CTNNB1 NUDT2 ESM1 CCL5 VHL MAPK3 TRIM25 IFNB1 CCL2 TSPO MAPK1 MBL2
ACE2 Pathway from BioCarta 2013 ACE2 COL4A1 COL4A3 COL4A2 COL4A5 CMA1 COL4A4 AGTR2 COL4A6 AGTR1 REN AGT
ACE2 PPI from the NCBI Gene database ACE2 ISYNA1 CAT DLEU2 HRAS GHRL AAMP AGT NTS CALM1
SARS coronavirus protease from BioPlanet 2019 CKM ANPEP NCL GPT EIF4E FBL MAPK14
SARS coronavirus endoRNAse from Virus-Host PPI P-HIPSTer 2020 RB1 RBL1 RBL2 UBC UBB ISG15
SARS coronavirus protein E from Virus-Host PPI P-HIPSTer 2020 APP BRD4 SRC VARS STAT1 STAT3 CTNNB1 STMN4 RAD23B HSPA4 ESR1 BAG3 EP300 CDK2 GRB2
SARS coronavirus hypothetical protein sars7a from Virus-Host PPI P-HIPSTer 2020 ARHGEF11 STAT1 ITGA4 STAT3 PDE4D LILRB1 FN1 LILRB2 VCAM1 YWHAZ SRPK2 DIAPH1 FMNL1 CD8A ARHGEF4 GRB2 DAAM1 EVL EZR YWHAG SRC PFAS KIR3DS1 YWHAE VARS YWHAB ARRB2 BRCA1 FASLG UBC BAG3 PSMD4 YWHAQ UBD SFN WASF1 B2M YWHAH
SARS coronavirus hypothetical protein sars9b from Virus-Host PPI P-HIPSTer 2020 YWHAG NPM1 SRC YWHAE YWHAB TARS YWHAZ UBC SUMO2 YWHAQ ARHGEF4 ATM SFN GRB2 B2M SQSTM1 YWHAH
SARS coronavirus orf1ab from Virus-Host PPI P-HIPSTer 2020 PPP2R1A SMARCA4 HIST1H4A APC RBCK1 TLN2 CALM1 APP RNF2 RB1 EPB41 FRMPD4 RPL13 FRMPD3 SNX31 BAIAP2L1 PSMD4 B2M GABARAPL2 PTK2 NPLOC4 FERMT2 PRKCZ GRB2 EZR FERMT3 RCOR1 MACF1 VARS EPB41L5 NUB1 EPB41L1 EPB41L2 EPB41L3 RCC1 SFN UBL4B LYN H3F3A TMUB2 LILRB1 FN1 TMUB1 BRAF GMIP ARHGEF4 ATM PABPC1 SDE2 UBXN1 SPTBN5 BRCA1 NEDD9 NEDD8 SPTA1 ATXN3 SNX1 UIMC1 EPS15 RPS27A SPTBN1 SPTBN2 UBXN6 STAT1 CSNK2A1 STAT3 FRMD8P1 XIAP NBR1 SF3A1 DYNC1H1 PFAS FAF1 CTNNB1 TUBA1A HERPUD1 HERPUD2 ING5 ING3 UBL5 ING4 WRN EP300 XPO6 UBTD2 SPTAN1 JAK1 UBTD1 JAK2 MAP3K1 USP7 TPM4 TPM3 VCAM1 GRIN1 ABI1 FAU UBE2K SQSTM1 PTPN3 PTPN4 ZFAND4 UBE2D3 UBXN2A UBE2D1 UBE2D2 ASAP2 EGFR USP2 SAP18 CAPN2 USP48 ASPSCR1 FRMD4B ISG15 ESR1 FRMD1 FRMD3 HGS FRMD6 FRMD7 FRMD8 CD8A UBA1 BIRC2 BIRC3 PXN CUL1 UBFD1 BAG6 UBC BAG3 UBB UBD NFATC2IP ABL1 PLS3 HSP90AA1 USP21 ITGA4 HSPA5 HSPA8 MSN RAD23B HSPA4 RAD23A PTPN14 SPTB RBL1 RBL2 UBQLNL NF2 MYH9 PLEC BCAR1 YWHAG YWHAE YWHAB PTPN21 TARS PIK3R2 ELAVL1 SHARPIN ERBB2 DDI2 YWHAQ DDI1 ANKUB1 YWHAH ANXA11 YWHAZ PKM CRK UBA52 USP15 SRC KIR3DS1 HSP90AB1 USP11 UHRF2 UHRF1 ARRB2 OASL SUMO2 SUMO1 IQUB SUMO3 UBQLN2 UBQLN1 TRIM28 FYN UBQLN4 NCK1 UBQLN3
SARS coronavirus 2-O-ribose methyltransferase from Virus-Host PPI P-HIPSTer 2020 RB1 RBL1 PFAS RBL2 STAT1 UBC UBB BRCA1 ISG15 GRB2 ELAVL1
SARS coronavirus leader protein from Virus-Host PPI P-HIPSTer 2020 LYN YWHAG SRC YWHAE STAT1 YWHAB STAT3 ISG15 YWHAZ UBC UBB YWHAQ ARHGEF4 CRK ABL1 SFN FYN GRB2 YWHAH NCK1
SARS coronavirus formerly known as growth-factor-like protein from Virus-Host PPI P-HIPSTer 2020 APP YWHAG SRC YWHAE VARS STAT1 YWHAB STAT3 ISG15 YWHAZ UBC UBB YWHAQ ARHGEF4 SFN GRB2 YWHAH
SARS coronavirus nsp7-pp1a from Virus-Host PPI P-HIPSTer 2020 HBG1 STAT1 HSPA5 HSPA8 MSN FN1 RAD23B ISG15 ESR1 YWHAZ SPTB EZR CALM1 APP YWHAG YWHAE VARS YWHAB PXN CTNNB1 HBD BRCA1 KALRN ING5 BAIAP2L1 HBM UBC BAG3 UBB EP300 YWHAQ HBQ1 SFN B2M SPTBN1 YWHAH
SARS coronavirus nsp9-pp1a from Virus-Host PPI P-HIPSTer 2020 APP SRC STAT1 HSPA5 STAT3 ISG15 UBC BAG3 UBB CD8A ARHGEF4 ATM GRB2
SARS coronavirus nucleocapsid protein from Virus-Host PPI P-HIPSTer 2020 NPM1 STAT1 CSNK2A1 STAT3 FN1 ESR1 YWHAZ TUBB4B TUBA4A TUBA8 CDK2 ATM GRB2 TRIB3 YWHAG SRC GSK3B YWHAE YWHAB CTNNB1 BRCA1 TUBA1A TUBA3C TUBA1C EP300 YWHAQ SFN B2M YWHAH
SARS coronavirus nsp3-pp1a from Virus-Host PPI P-HIPSTer 2020 MAP3K1 FAU RBCK1 TLN2 SQSTM1 PTPN4 APP RNF2 RB1 EPB41 FRMPD4 ZFAND4 FRMPD3 SNX31 PSMD4 SAP18 USP48 GABARAPL2 ASPSCR1 FRMD4B ISG15 ESR1 FRMD1 FRMD3 PTK2 NPLOC4 FERMT2 PRKCZ HGS FRMD6 FRMD7 FRMD8 CD8A GRB2 EZR FERMT3 VCP VARS UBFD1 EPB41L5 NUB1 BAG6 EPB41L1 UBC BAG3 UBB EPB41L3 UBD NFATC2IP SFN UBL4B PAICS ITGA4 MSN TMUB2 LILRB1 FN1 TMUB1 RAD23B BRAF RAD23A PTPN14 RBL1 RBL2 UBQLNL ARHGEF4 NF2 MYH9 ATM SDE2 UBXN1 YWHAG YWHAE YWHAB PTPN21 BRCA1 TARS NEDD8 ATXN3 SHARPIN UIMC1 DDI2 YWHAQ DDI1 EPS15 ANKUB1 RPS27A YWHAH UBXN6 STAT1 STAT3 YWHAZ NBR1 UBA52 SF3A1 USP15 SRC FAF1 USP11 UHRF2 UHRF1 HERPUD1 OASL HERPUD2 UBL5 EPB41L4A SUMO2 SUMO1 IQUB SUMO3 UBQLN2 UBTD2 UBQLN1 UBQLN4 JAK1 UBTD1 UBQLN3 JAK2
SARS coronavirus nsp8-pp1a from Virus-Host PPI P-HIPSTer 2020 STAT1 TPM4 STAT3 H3F3A TPM3 MSN FN1 RAD23B HSPA4 ISG15 SMARCA4 HIST1H4A ABI1 NBR1 ATM GRB2 PLEC EZR CHRNB1 DYNC1H1 BCAR1 RCOR1 APP SPTBN5 SRC MACF1 RPL13 CTNNB1 CUL1 ARRB2 BRCA1 NEDD9 ELAVL1 TUBA1A BAIAP2L1 SPTA1 UBC BAG3 UBB ERBB2 EP300 CAPN2 STX3 SPTAN1 SPTBN1
SARS coronavirus RNA-dependent RNA polymerase from Virus-Host PPI P-HIPSTer 2020 YWHAG YWHAB UBC UBB CDK2 ISG15 GRB2 YWHAZ TRIB3
SARS coronavirus E2 glycoprotein precursor from Virus-Host PPI P-HIPSTer 2020 ACE HSP90AA1 SIGLEC15 MSN LILRB1 FN1 LSAMP LILRB2 VCAM1 CD200R1 CD4 CD7 ARHGEF4 ATM MXRA8 PDCD1 VSTM2B CD244 IGSF8 APP IGSF9 YWHAG MIPEP YWHAE YWHAB IGSF3 BRCA1 TARS ELAVL1 THY1 TREM2 HAPLN2 SIRPB2 VPREB3 PSMD4 YWHAQ MPZL1 CTLA4 B2M SCN3B YWHAH ICOS MPZL3 TRGV3 STAT1 STAT3 ESR1 YWHAZ ACE2 CD8B CD8A GRB2 SCN2B EZR SRC FLT1 PFAS KIR3DS1 NCAN TTN CD79B BAG3 EP300 SIRPA Q6P2N6 GPA33 VSIG4 SFN SIRPD NPTN CD200R1L VSTM4
SARS coronavirus nsp4-pp1a from Virus-Host PPI P-HIPSTer 2020 YWHAG SRC YWHAE STAT1 YWHAB STAT3 BRCA1 ISG15 YWHAZ UBC UBB EP300 YWHAQ SFN GRB2 YWHAH
SARS coronavirus P2 envelope protein from Virus-Host PPI P-HIPSTer 2020 APP BRD4 SRC VARS STAT1 STAT3 CTNNB1 STMN4 RAD23B HSPA4 ESR1 BAG3 EP300 CDK2 GRB2
COVID-19 patients BALF up RPL21 RPL24 RPL23 SYTL2 SYTL5 C12ORF75 GATAD2B WDR78 KIAA1217 MARCKS RPS13P2 RPL24P4 AP001324.1 RPL27 C2ORF73 PRKAA2 MT-ND5 EHF MT-ND6 RPL11 MT-CO1 MT-CO2 RPL12 WDR63 ADCY2 STATH MT-ND3 FNBP1L MT-ND4 TMEM71 MT-ND1 MT-ND2 AL450998.1 LSM12 KIAA1324 KCNQ1OT1 LURAP1L S100A14 PLCE1 RPL14 SNORA73B RPL12P4 HES1 RPL19 EXPH5 LINC00630 LINC00632 SAMD12 CHST9 LINC01881 FYB1 CNTD1 CFAP53 ABCA1 RPL41 NEBL FZD6 AC138393.1 STARD10 PBX1 PLEKHS1 MT-CO3 AC090498.1 FREM2 AC105052.5 RPL6 RPL31 ZNF253 RPL30 DANCR PATJ AL035661.1 CFH MT-ND4L NEDD4L TEX26 RPL9 PLA2G7 RPL7 ADH7 RPL13AP25 ZC3H12D AC069549.2 RPSAP58 MTATP6P1 NKX3-1 RPL37 HESX1 RPL39 TPRG1 RPL38 RPL21P16 AC011933.2 WDR38 COLCA1 GRAMD2B H3F3A PRSS16 TET2 EMP2 KIAA1143 CP TMC5 C1ORF21 H19 PAWR GPRC5A ZEB1 RPL3P4 MZT2A ZEB2 PAX9 VEPH1 CCDC7 RARB ANKRD66 ADGRL2 HIST2H2AC AC111149.2 TRIM2 HIST2H2AB C20ORF85 TRIM7 EPCAM FAM204BP MECOM SH3BGRL2 TCP11L2 RPL14P1 RNF152 RPL37P2 TEAD1 RPS15A RPS27A ZNF467 CGNL1 SERPINB5 SERPINB2 MBNL2 ZNF462 SERPINB3 AADAT ZNF460 MTRNR2L12 ACOT13 CD180 RNASE7 FMO2 MTND1P23 AC007996.1 FMO3 NFIA POU5F2 MIPOL1 ZNF33B NPM1P27 AC034236.1 PLCB4 DHRS9 MORN5 NFIB CKS2 SERPINB11 MT-TP PIGR CRCT1 RPLP2 CEP295NL RPLP1 LRRC18 ALMS1 RN7SL5P FMN1 PRSS23 FOXQ1 ADAM28 HEY1 RPL10AP6 GCNT3 GCNT4 METTL7B AGR2 RICTOR DEPTOR CYP2F1 ZNF564 RPS8 S100A2 RPS7 CYBRD1 PNRC1 RPSA TC2N ENKUR FOXP2 DCDC1 ITGA10 C1ORF116 RPL13AP5 UTS2 PKP4 COPS9 UTRN SPINT1-AS1 PPIL6 ANKRD36C FRK LINC02541 AC079793.1 SLC27A2 VTCN1 KLHL6-AS1 ZC3HAV1L EGFR C6ORF132 ZBTB20 FAM214A FAM117B CXCL17 ABLIM1 RAB25 SLC16A7 SLC16A9 PITX1 LZTS3 AC099336.2 STOX1 SLC15A2 OSBPL6 FP671120.7 RBPMS FAM229B AL033519.3 FBXO36 NBEA HOPX MAP3K19 METTL23 MAL LCN2 MALAT1 C3ORF67 FTL MTCO3P12 BIRC3 ZNF532 MDM2 ANKRD33B IL5RA ARL3 TACSTD2 AK4 OLFML2B ATP12A CDC14B RHOBTB3 FAM216B RIMS1 CLCA2 AC104126.1 EFHD1 SRGAP1 CLCA4 SYBU AC122718.1 GPX2 ITGA2 RPL22P1 RPL13A PTPN13 RPL21P28 AOPEP RPL37A SCGB3A1 ESRP1 PIP CCDC74A DSG2 AL133243.4 MT-CYB ZNF750 ST6GALNAC1 NFAT5 SLC25A4 FAM114A1 SOX21-AS1 NDUFB2 SPATA5 AC012066.1 DUSP16 WDFY3-AS2 AC012066.2 ZNF507 RPS23P8 BCAS1 FNIP2 CEP170 CCDC30 LINC01765 PPP1R14C DPRXP4 TSTD1 MYO10 RPL35A COBL KLF5 FBXL13 ATOX1 MYO1D MYO1B SMPDL3A EEF1A1P5 PLEKHG1 BDP1 TPT1 ZNF850 LINC01315 SEMA3A LINC00342 CEBPD EEF1A1P6 PSCA NCKAP1 PTEN KIAA1671 PAICSP1 STARD13-AS RN7SL3 RN7SL1 TRIM29 CCL8 AC114760.2 PTPRZ1 IQUB ZNF204P BEND5 SLITRK6 ERC1 CCL2 SMIM31 SH3D19 SLC25A23 RPL7A MSMB BEND7 TTC39A ENTPD3 KRT5 ZFP1 KRT4 KRT8 KRT7 PLEKHA5 TM4SF1 ASS1 TRIM52-AS1 HIST1H4B SNTN CCDC80 GAREM1 MAPK10 NINJ1 IFI27 APLF SLPI DDX10P1 HIST1H4H HIST1H4I MXRA7 CCDC84 MT1E AC116533.1 SPRR3 IFITM3 SATB1 IFITM1 ADH1C UQCR10 RPS15AP1 AQP5 BAIAP2L1 PARD6B SHOC1 ZNF827 RPS2P46 MAL2 POF1B PART1 AL139100.1 EGR1 GADD45A OMG MYO5B FTH1P7 ANK3 FTH1P8 TENT5C EXT1 RPS27 INPP4B BPIFB1 TMSB4XP4 RPS26 SNHG16 RPS29 RPL27A MYO5C SDC1 RPL26P19 RPS20 SPRR1A SPRR1B APOBEC3A RPS25 RGL1 CFTR CCNO RPS24 CERKL PTGFR GASK1B TSHZ2 WFDC2 PPL PALM2-AKAP2 ACTR3C INSYN2B DNALI1 RPS16 RPS15 MT2A AC016739.1 RPS18 RPS3AP26 SOX2 RASSF6 TSPAN8 TSPAN6 KIF21A TNFSF10 RPS12 RPS11 TNS4 RALGPS2 RPS14 RPS13 TP63 RPL41P1 PCP4L1 NME5 KLK11 OSMR ENAH CRNN TOX3 KRT19 KRT18 KRT17 CEACAM6 CEACAM5 KRT15 SOX2-OT TFF3 MTCO1P12 TFF1 CD24 AC006141.1 LINC01133 MTND5P32 IGSF6 COX7C RPS3AP6 TMPRSS4 OTUD7B TMPRSS2 RPL13P12 FTH1P10 GNGT2 DUOX2 STK33 AC009951.4 MAP7 MAP6 SPTBN1 SPRR2D IL33 TPD52 SORBS2 C9ORF116 MPP7 TJP1 TTC9 FAM183A TPST1 MT-RNR2 MT-RNR1 BBOF1 AC073861.1 NEK10 TACC2 SLC22A23 AC007969.1 ECM1 MTRNR2L1 PTN MTRNR2L8 AIF1 SPAG16 SH3RF1 PCLO AKAP14 MT-ATP6 AC099560.2 RPS7P1 MTCO2P12 MTCO2P11 SPINK5 HS3ST1 SLX4IP GABRP TGFB2 LMO3 RPL6P27 SHISA6 LMO7 EEF1A1 APTR AC005912.1 GSTA1 CD300E CDK2AP1 UCA1 CNTN5 KLHDC9 RAI14 YAP1 AL033523.1 SRGAP3-AS2 PRDM1 NDRG2 COX6A1 SCEL NT5E RAB40B TMEM246 CCND1 PERP HIST1H2AG FOPNL REPS2 HIST1H2AC RPL39P3 ARHGEF12 TMPRSS11B AUTS2 ARID5B CHCHD10 A2ML1 TMPRSS11D TMPRSS11E TMEM232 FTH1P20 AC026403.1 ISG20 NR4A2 ZNF91 DLGAP1-AS1 DDAH1 DYNLRB2 TAB2 FGF14 MUC21 AQP4-AS1 FGFR2 CRISP3 CCL4L2 RASEF SLC2A1 HTRA1 CNN3 AC018628.1 RGS2 SNORD17 COBLL1 MUC13 USP51 MUC15 MUC16 FDCSP RPL15P3 MAPK6P3 QSER1 ADGRG1 CYP2J2 ARFGEF3 GALNT5 GALNT3 RPL7P9 MYRIP RPS3A HUNK PARVA GULP1 CEP170P1 RPL7P1 ELF3 MEIS1 TMIGD3 HOOK1 H3F3AP4 CYP2B7P TSGA10 BMPR1B MCTP2 CCL3L1 TTC22 HSPB8 TRPS1 CXCL2 SLC40A1 CXCL1 AGAP1 CXCL6 SCIN UPK1B MCF2L RPL7AP6 ERBB3 HIST1H1E CA8 CFAP47 AC066616.2 AC092645.2 HIST1H1C FAM83B HIST1H1D TIMM8B LMNTD1 FTLP3 EYA1 SNORA79B EYA4 HIST1H2AL KCTD1 AL162377.1 AC004765.1 AC024293.1 C9ORF24 USF3 SGPP2 AL590867.2 SETBP1 PEAK1 S100P SSBP2 HIST1H2BH AC013264.1 HIST1H2BC HIST1H2BD HLF STEAP4 HIST1H2BK THRB C4ORF19 SIX1 RPS27AP16 RND3 SLC4A4 RTEL1P1 HTN1 NT5DC2 HTN3 EVA1C AL357093.2 SIX4 IGLC2 LRIG3 CRYM RPL18AP3
COVID-19 patients BALF down UNC13D BSDC1 NUP210 SCAMP2 MAPK8IP3 GALNS MARCO TOLLIP RFX5 CD2BP2 ORAI2 BAX UQCRC1 SIK2 CPVL RETREG2 AKAP1 CYBC1 TBC1D9B SF3B4 LRP1 AQP3 ADCY7 NCLN PDCD11 ALOX5 TGOLN2 AKT1 SLAMF8 APOL2 NCSTN APOL1 SLC12A9 TMEM184B TMED9 SLC11A1 ATP6AP1 EDEM2 RMDN3 VPS37C HLA-B MIF4GD HLA-E VASP IFFO1 GIGYF1 SLC6A6 ACER3 PARP10 POR GORASP1 TAGLN2 SF1 C2CD2L OGDH PHB2 SPI1 PIEZO1 NUMA1 TMEM94 CYB5R3 PCNX3 STMN1 SNRNP70 MICAL1 TSPAN3 PIP5K1C ZBTB7B UPF1 LRRC25 ITPK1 EMP3 TMC8 TMEM173 TYK2 TMC6 RHOB SUMF2 BST2 INF2 ITPKB PIGK GART RARA DAZAP1 ARF3 SLC44A2 SEL1L ABHD2 QSOX1 CD37 AP1M1 CIC CTSD MPZL2 TOR3A MBD6 CLUH MBD1 GAA SYVN1 VASH1 WDR13 TMEM273 XAB2 TM9SF3 DHRS7 DDB1 B3GNT7 TAOK2 SHKBP1 NUCB1 PNPLA6 PLEKHO2 PLCB2 HBEGF TKT PNPLA2 ANKRD13D C1QC NRP2 C1QA TOMM40 RNASEL GRN PYGB PTGER4 ZDHHC7 PRAM1 LMAN2 FCGRT NDST1 OS9 MRC1 SDF4 ANKRD52 GPAT4 HS1BP3 ENPP4 ZSWIM8 MGAT1 TBC1D10B TBC1D10C LAIR1 GSN TLE5 IL4R SEC24C TOR1B DENND4B TBC1D2B TRPV2 DOK2 SELENON SLC9A6 STIM1 ARHGAP30 PLOD1 GPD1 ATG16L2 EHBP1L1 TGFBI TUBGCP6 ZYX FKBP8 ZNF316 MYADM STEAP3 LRP10 SNRPB GRINA SRSF9 VKORC1L1 TYMP RIPOR1 SRRT CD81 URM1 PROS1 SLC1A5 INPPL1 ATP10A ATP1A1 CXCL16 GGA1 EFTUD2 LMNA KHSRP PTPA SH3TC1 TMEM127 DDRGK1 SH3BP2 NACC1 EMC1 PES1 FLNA BANF1 NLRP1 RELT SLC16A3 CMTR1 ACSS1 PDIA4 SLC15A3 PRNP ARID5A KCNAB2 CYBA SMAD7 PGD PDIA6 ACLY DDOST HGS GNB2 STT3A MAP3K11 GPR107 GLYR1 LGALS3BP SRPRA SLC38A10 CORO1B ARHGAP4 SLCO2B1 HCAR2 UBB TMEM109 NFATC2IP TRIM65 ACAA1 TTC14 ABCC3 ITGA5 KSR1 RHBDD2 CMTM6 ARAP1 ADA2 TMBIM1 PARVG MYH9 ATG4B MAN2B1 TMBIM6 PPP1R12C FBP1 PLEC NFE2L1 H6PD KCNK6 GSK3A SHC1 SLC3A2 DDX41 TNFAIP2 HK1 ARHGEF10L HK3 SIRPB2 GRK2 DNAJB2 APH1A SPN RIC8A C15ORF39 SYNGR2 DPP7 ZC3H7B PPP6R1 PPP6R2 ADGRE5 SYMPK EMILIN2 CHID1 CPT1A CAD KHNYN LEMD2 USF1 PLA2G15 PFKL LTBR UNC50 MAN1B1 RGS12 LEPROT EIF3B MYO1G CD101 ITGB2 SMARCD1 ITGB1 HDAC6 SMARCD2 ACADVL UNC93B1 LSP1 PRKCSH USP11 ITGB5 LDB1 PRPS1 MVP EMC10 THBS1 SPATA20 ITGAM ITGAL USP19 NADSYN1 ARHGDIA GANAB RPS6KA1 NAGLU SIN3B PSD4 PTK2B ITGAX FBXO6 TRIM28 POLG COLGALT1 NPTN
COVID-19 patients PBMC up UNC13B PRELID1 AC138207.9 IGHV3-11 AC138207.4 IGHV3-13 IGHV3-15 MCEMP1 RN7SL138P SCD DEPDC1B MTHFD2 ADPRH VPS25 AC006946.1 ANKLE1 CYFIP1 IGHV3-20 IGHV4-4 POMP IGHV3-21 IGHV3-22 HERC2P4 IGHV3-23 C3AR1 NCAPG AKIP1 NCAPH SNX32 IGHV2-70D UACA ACCS MILR1 KNSTRN IGKV1-17 CHST13 CAPNS1 IGKV1-16 IGKV1-13 AP2S1 IGKV1-12 PPARGC1B GTSE1 APOL4 EPSTI1 FZD2 BATF2 PRR11 HLA-DRB6 PLK1 FZD5 STARD13 ST14 ERLIN1 IGHV2-26 ELL2 AC007952.4 FAM198B-AS1 TBL2 TCN2 SAPCD2 KCNMA1 PLBD1 PPT1 LINC02724 C5ORF30 PADI2 EZH2 LINC02723 CDCA2 GLDC CDCA3 43891 CDCA5 ITSN1 PDGFC CDCA8 HPR MRPL15 ENO1 IGHV1-69 RAPH1 C2 LIPA EPS8 GLDN MRPL12 OPLAH SULT1A1 PRDX3 C5 SCPEP1 NETO2 ALCAM PRDX1 ARPIN LTA4H MYBL2 AL035411.1 ZNF366 CENPU SNAPIN CENPW ANXA2 TPI1 RMI1 ANXA5 FUCA2 MYOF FCRL5 FN1 CARD6 CDC6 DUSP7 MS4A4A IGLJ3 IGLV2-23 CENPF SLCO4A1 PAX8 DPYD MMP19 IGLV2-28 CDKN3 TMEM106A HLA-DQB2 IGHV6-1 SKA1 IGHV1-46 CLTA MRPL37 AREG VSIG10L IGLV2-34 TRIM7 LDHA TK1 FLVCR2 TIMP4 PLEKHN1 TIMP1 TK2 IGHA2 CEP55 HLA-DQA2 DLGAP5 IGHA1 ZNF100 DYNLL1 CDKN2B GSTO1 SQOR CD180 SLC39A11 CIT RNASE3 RNASE2 F5 DHRS4 RNASE1 IGHV1-18 IGLL5 IGKJ4 HADHB MRPL51 IGLV3-16 IGLV3-10 ADAM15 IGKJ1 HADHA PLP2 PPARG CKS2 AL021155.5 IGLV3-19 FH C5ORF66 XXYLT1 SERPINB10 HEXB IGHV1-24 ASGR2 PSMB7 IGLV3-25 JPH4 IGLV3-21 NUF2 MRC1 GPNMB PSMB2 METTL7A TMEM38A TSPO AL355922.1 NUDT16 JAK2 FADS1 IGHV3-69-1 SLC16A1 AC098679.2 CD163 AC027601.6 IGKV1-9 IGKV1-8 IGKV1-6 CYBRD1 CDC25A IGKV1D-37 PAX8-AS1 AC078819.1 IGKV1D-39 CORO2B TEX2 IGKV1D-33 SAP30 CXCL10 FKBP9 IGKV1-5 ADAM9 AC093627.4 FKBP5 C11ORF74 ALDH1L2 LINC02785 CTNND1 HP LINC00482 HJURP PAPSS1 C1ORF115 BZW2 FGD2 RAB20 ADORA3 SLC16A8 GRB10 RBBP8 LDLR MPDU1 IGHV5-51 MAP3K6 AC245014.3 IGFBP2 IGHV3-72 IGHV3-73 CERS6 IGHV3-74 SEMA6B GLMP IGKV1D-16 MAFB ADAP2 IGLV1-40 IGKV1D-12 PGD C1ORF43 IGKV1D-13 GPAT2P1 IGHGP IGLV1-36 KIFC1 MAFG BIRC5 EIF4G1 TROAP BCAT1 KCNE1 CALCRL IGHV1-2 IGHV4-55 AK2 TRIM71 HVCN1 AK4 IGHV4-59 PKMYT1 IGLV1-51 OLFML2A IGLV1-44 IGHG4 IGLV2-11 IGHG2 IGHG3 IGLV1-41 IGHG1 IGLV1-47 IGLV2-14 NEK2 SLC38A7 SRD5A1 IGLV2-18 SRGAP1 IGHV4-61 RPH3A GPX1 ITGA1 MGME1 PRRT4 IGHV3-53 C1ORF162 MACC1 NRG1 DHCR24 IGHV4-28 CDC42BPA MERTK Z93241.1 G6PC3 IGHJ5 IGHJ6 IGHJ3 CDK5 ESPL1 IGHJ4 AC140134.1 IGHJ2 ECHDC3 CDK1 ITGA7 ACO2 CHRFAM7A MCM2 IGHV2-5 IGHV3-62 IGHV4-31 IGHV3-64 IGHV4-34 IGHV3-66 NDUFB5 SHMT1 TMEM121B HMMR MCM10 NREP CBWD1 IGKV3D-11 IGHV4-39 IGKV3D-15 SPR ORC1 TNFRSF17 ME1 AC253572.2 WASF1 IGHV3-30 IGHV3-33 KCNK13 SPAG5 NAGA ZBTB32 IGKV3D-20 AL645608.2 AL022322.1 ASPM MYO1E PKM P2RX4 RAB13 LINC00106 ANG DTL ALDH9A1 GAPDH IGHV2-70 NECTIN2 CEBPA MTCH2 SEC23B FLT1 SMARCD3 SEC11A FRRS1 SH2D4A FLT3 IGHV3-43 AC004923.4 KIAA0895L ZBTB43 IGHV3-48 IGHV3-49 TTK HSD17B10 DEPP1 CDC45 CLEC1B EXO1 ADAMTS2 SLITRK4 SPCS2P4 LINC01547 EPHB2 IGHV3-7 PGM2 SLC35A5 KNL1 IGKV5-2 MYO7A MIR181A1HG CDC20 GSTZ1 MARCO LAP3 AC008957.3 IGKV1D-8 KIF20A NAIP MT1E MT1F CES1 GLRX IGLV3-1 PNP STS AC100786.1 E2F1 E2F2 NTSR1 AF111167.2 PTGFRN IGKV6-21 FER1L4 MSR1 EAF2 PAQR4 ERAL1 TUBG1 IFI44 ALOX15B GBGT1 AIMP2 SMIM34B TPX2 HTR7P1 IGKV2D-29 SMTN NET1 SPATS2L NDUFAF3 SDC1 IGKV2D-24 IGKV4-1 NDUFAF1 IGKV2D-28 INKA1 IFI27L2 GASK1B IGKV2D-30 FAM89A CES1P2 CES1P1 WFDC1 ICAM5 TMTC2 TMTC1 MGST1 NLN CD1A TRPM2 DHFRP1 IGLV2-8 COMMD9 LGALS3 LGALS1 SLC9A7P1 IGLV2-5 KIAA0930 IGLV9-49 IGHV1-69D TNFSF10 SIL1 AC018647.2 CTSB CCR2 SIGLEC16 IL10 TMEM150B AC106865.1 IGKV3-7 SIGLEC12 IGKV2D-40 SIGLEC11 IGLV7-46 IGLV7-43 IL18 RENBP LHFPL2 ZWINT LILRB5 SYN2 NME1 DERA ANLN FAM20C ANXA2P2 MPND KPTN MZB1 ACVRL1 KIF11 PTPRO MAOA SDC4 TOP2A CTSZ KIF15 KIF14 TWF2 AC012085.1 BRCA2 JCHAIN SLC22A16 SNX3 SH3PXD2B ERI2 NKIRAS2 CTSL CLTCL1 RRAS TNFAIP8L2 SNX8 PCK2 OTOF CTSD CBR1 SORT1 OLAH ATP5PB GAA CREG1 CEBPA-DT ANO5 KCNQ1 TPST1 STAC3 TRIP13 KIAA1958 AL139384.1 C1QC AC067930.5 C1QB CCDC200 C1QA COX5A SLC43A3 CAPG MKI67 HCCS NUS1P1 AC068580.3 ARNTL2 ATP5F1B SPTLC2 ATP5F1C METTL9 CCT8 MGAT1 LAIR1 CCT5 LMO2 UBE2C ALG14 OCRL ARHGAP29 SDHD FAH ALDH4A1 GNPDA1 SLFN11 ARHGAP31 TP53I3 BUB1B KIF4A STEAP3 YPEL4 RPL26L1 IGKV3-20 NOL3 RGS16 CHRNA7 AURKA PRDM1 SLC1A3 HSD17B4 SLC1A5 HDLBP TYMS AURKB IGKC GAS2L3 OPN3 IGKV2-40 NIBAN2 IDH1 STIL SMAD1 IGHV1-69-2 HGF TDRD9 KIF23 PDIA5 CCNA2 KIF18B H1F0 OSTC STT3A KIF2C AMPH MICU1 BLVRA IGKV2-30 LPL COPB2 ROGDI ATP5MC3 PSEN2 HTRA1 ARHGAP23 MYDGF CCNB2 CCNB1 UAP1L1 CLSPN IGLV6-57 IGKV3-15 SIRPD ATP6V1F IGKV3-11 AC009303.4 C14ORF119 GGH GALNT2 PYCR1 SHROOM1 OAS1 TICRR ADA2 PHETA2 GRHPR COQ5 GALK1 TMIGD3 IRF5 NDUFS7 FAM72A NDUFS4 AC090204.1 FAM72D DOCK1 TMEM45A FAM72C FAM72B YWHAG LAMC1 LMNB1 SNORD3C AGPAT2 HK1 SEPTIN10 IGLV4-60 PLD3 MARVELD1 HEBP1 RASGEF1B NRIP1 FABP5P7 IGKV2-29 IGKV2-28 GPER1 IGKV2-26 IGKV2-24 H1FX TIMM8B RRM2 POLQ KCTD3 SCIMP SHCBP1 CLDN7 TBC1D2 PLA2G15 CAT DDIT4 IGLV4-69 IGKV1-27 SPRY2 VDAC1 IGLV10-54 SCARB2 CLEC12B AL844908.1 CLEC12A SOWAHD CD163L1 CLCN4 ACVR1B AC130689.1 NT5DC2 IGKV1-39 IGKV1-37 VSIG4 IGLC2 IGKV1-33 PDSS1 IGLC3 ABCD1 MAPK6 BUB1
COVID-19 patients PBMC down CACNA2D2 PLEKHA1 SYTL2 PRSS30P EBF4 AC008440.1 SOX13 SIGLEC17P RUNX3 CCDC80 RHEBL1 RNVU1-18 CORO6 ZNF831 ZNF830 LINC00402 CHIC1 CLDND2 MT-ND6 LINC02384 AC131568.1 AKAP5 FAM169A AL359962.3 AL359962.2 AKT3 LINC-PINT LINC00513 SNORA73B AL365203.2 CCN3 ARVCF RAB11FIP5 PTGDR AC068282.1 YES1 ZNF266 TSPYL1 EGR3 MIR3648-1 MIR3648-2 BCL11B SH2D1B MMP23A NUAK1 TOPORS FAM160A1 ZFPM1 SCARNA5 CTAGE6 TCN1 AC020978.3 MMP23B CTAGE9 AC010894.3 ITM2A AC010894.5 SLC45A3 SPON1 RNVU1-7 AC008533.1 TSHZ2 TMEM182 IKZF2 GATA3 KLF3-AS1 PDGFD KIF21A MTERF2 RNA5-8SN2 A2M RNA5-8SN1 BMERB1 MYBL1 RNA5-8SN3 CEP78 ZNF365 AC092652.2 LINC00298 GSTM2 LINC00299 FCRL6 GSTM1 SCARNA21 AC010168.2 AC022217.3 MAGEE1 FAAHP1 PTCH1 AC104809.2 ZDHHC11B AC089984.2 MLF1 C1ORF21 NCR3 AC016957.2 AC009318.1 U1 HAR1A ZNF528-AS1 COL18A1 PTPRS PTGDR2 AC068587.4 AL035701.1 KIR2DL1 AP000936.3 MYO6 5_8S_RRNA ST8SIA6 CCR9 C16ORF54 CAMP CCR3 LINC02458 KRTAP5-AS1 NOG MME G0S2 KIR3DL1 AKR1C3 RN7SL4P MPP6 CROCC2 MIB2 PER3 LINC00869 LINC00987 ANGPTL6 LGR6 LLGL2 TJP3 ZNF574 RNU4-1 AL359636.2 CDKN1C RN7SL5P PRSS23 BEGAIN CST7 FGFRL1 GLI1 CRIP2 NBPF13P PTGS2 ZFYVE28 AKAP12 CXCR2 CAMK2N1 FP236383.4 A2MP1 FP236383.5 ENPP3 LINC00612 HEATR4 ENPP5 BTG1P1 SNORA75 RORA-AS1 GDF11 CA11 Z94721.3 ARHGEF35 Z94721.1 AC079781.5 SEMA4C TPM2 B3GAT1 MATK CR392039.1 LGALS9B PRSS57 LGALS9C LRFN3 CLC YPEL1 ADORA2A-AS1 OVCH1-AS1 KANK3 CEP126 AC079793.1 PRDM8 RNU1-4 RNU1-3 RNU1-2 GPR68 RNU1-1 AL031283.1 AC026124.2 SLC1A7 EFNA5 ZBTB20 RNU1-27P AL713852.1 LCNL1 AL499604.1 TSPOAP1 S1PR5 MYH11 CPA3 ZNF540 SLC30A4 FP671120.7 AC006369.1 AUTS2 FP671120.6 IGFBP3 AC026748.1 TNFRSF10C UPK3B ESR2 RNU1-28P LRRC43 ZNF91 TFDP2 CDHR1 COL6A2 CDHR3 MALAT1 FP671120.2 LINC00944 KLRB1 RNF165 IL7R AC008033.3 AC087854.1 CCL4L2 AC022973.3 AL365475.1 IL5RA CABP4 LTBP4 RHOBTB3 PDZD4 A2M-AS1 KIF3A MSC AC009133.3 RN7SKP71 RPL10P19 TRBV29-1 AC020659.1 NAP1L2 TRDJ1 KY METAZOA_SRP TGFBR3 AP003717.4 ARL4D C19ORF84 AJM1 ARL4C ESRP2 IFNG CMTM2 CD247 MS4A2 CHI3L1 BMPR1A LINC002481 TNRC6C CXCL8 ABCB1 TRIM51BP CRYBG2 PZP SH2D2A ZBTB20-AS1 AC044849.1 NCALD AP004608.1 AGAP1 AL135818.1 HRH4 TRDC TPPP AC092645.1 B4GALNT3 LIM2 AC058791.1 AC067945.3 NTRK1 AC008735.2 AC016831.1 KLF2 AP001033.2 AC111000.4 MGAT4A FAM131B ADGRB2 CRY1 EEF1A1P3 SIGIRR DRAXIN LINC02520 LAMA2 RNU6-1010P LINC02084 SLC4A4 PBXIP1 KRT17P8 RN7SL1 RPS6KA5 SGCD SLC25A29 ADAMTS1 CCL4 EPHB1 ITGB8 NEO1 ZNF600 REELD1 COLGALT2 KLRG1 AL355987.4
SARS-CoV-2/Human Interactome Gene Set from Guzzi BTF3 UBE2I NMB FAM108A1 BRF1 SFTPD NCOA5 CAV1 C20ORF27 C1ORF63 ARL4D EEF1A1 PPIA LCP1 LAS1L ALB CD209 IRF3 PPIG BCL2 PPIH CLEC4M CLEC4G EIF4B C11ORF74 SLC46A3 YWHAE TPSB2 BCL2A1 TMPRSS2 C7ORF36 BZW2 CHEK2 NPHP3 CCHCR NAE1 HNRPA1 MCL1 KPNA2 FAHD1 ATP6V1G1 VKORC1 SGTA CAMLG ND4L C1ORF142 TERF1 TBCB MIF4GD ACE2 FKBP1A RYBP HGS PSMA2 DDAH2 PLEKHO1 RNF128 RCAN3 MKRN2 SMOC1 BCL2L1 SERPING1 OCIAD2 MKRN3 CHMP2B EIF3F RPS20 H2AFY2 PFDN5 MNAT1 ATF5 BCL2L2 ZNF410 BAP1 DDX5 BAT3 DCTN2 NDUFA10 XPA ENO1 N4BP2L2 ISLR DEDD2 IKBKB RPS17 POLR2B HOXC6 COX2 TPSAB1 MARK3 MARK2 NOMO3
SARS Perturbation Down Genes Mouse Lung from GSE68820:GPL7202:1 TRDN ZNF442 CCL24 MYBPC3 CKM EBF2 CIDEC CCK CIDEA OBSCN MYL7 MYH4 MYL1 GSTA5 KRT15 MYL4 CD207 CYP1A1 ITGB1BP2 THRSP MYH6 S100A9 TMEM45B MYH8 PON1 MOGAT1 ALOX15 HSPB3 RETN METTL21C CSRP3 MB CA3 DHRS7C XIRP2 ANKRD33 GPR113 BVES ADIPOQ PLIN1 PGAM2 IL36G FABP3 FABP4 TXLNB TNNT2 DCT PLIN4 CASQ2 CYP2E1 FABP1 RYR2 MYOM2 CFD CST9L BEX1 DOC2B KCNA1 STMN3 TMEM182 KCNA6 TTN COX7A1 LCTL SRL CKMT2 BPIFA1 NPPA NPY MYBPHL TNNI3 VAT1L CDH26 ENPP6 KCNJ3 CCL17
SARS Perturbation Up Genes Mouse Lung from GSE68820:GPL7202:2 COL24A1 ZNF705A PASK DEPDC1B MTHFD2 GPR162 ASF1B ANKLE1 ATF3 C3AR1 NCAPG CH25H FAM132B APOL6 KNSTRN CREB3L3 UBASH3A GBP5 GTSE1 GBP4 EPSTI1 PRR11 PLK1 CYP4F2 MASTL SAPCD2 EZH2 GTSF1 CFB MS4A7 CDCA2 CDCA3 CDCA5 NCAPG2 CDCA8 LY9 SMC2 C2 CHTF18 C3 SPIC GPR176 GPR171 FIGNL1 OCSTAMP HOXC5 MYBL1 BARD1 TCF19 GPR15 CENPW LRRC25 PHF11 DUSP2 FCRL5 IL10RA PRSS16 GP2 CDC6 CENPE CENPF CENPH SLC7A8 SIGLEC1 CENPI INCENP CENPK CENPM CENPN CENPP PHF19 CDKN3 IL18BP SKA1 PARPBP MEFV IQGAP3 SKA3 RAD51AP1 CHL1 TK1 PBK TIMP1 CEP55 DLGAP5 HELLS STAT1 EMR1 GPR31 GPR141 MS4A6A GATM AADAC HCLS1 NCAPD2 CKS2 SLC29A3 CCL13 LOC101929327 GRN AOAH CENPA PRSS22 PSMB8 NUF2 GPNMB AGR2 SEPT12 LAG3 CD160 TAP1 CXCL10 MELK CXCL13 PSAT1 CLEC4A PDCD1 FKBP5 MAD2L1 ALDH1L2 GPR68 CASC5 GPR65 TNF C1ORF112 HPGDS PYCARD IL12RB1 BCL2L15 FANCI C11ORF82 FAM26F FBXO39 B3GALT5 LY86 MAFB NDC80 MMS22L CLEC6A LHX2 KIFC1 CNGB3 BIRC5 LCN2 TROAP XAF1 BCAT1 CD274 GPR84 FASLG FOXM1 CHAF1A CHAF1B CLEC5A TNFRSF9 OIP5 KCNJ10 SLC37A2 XCL1 FCGR2A FCGR2B ESPL1 MCM5 CDK1 MTFR2 LCP2 SLC26A4 MCM2 SFT2D1 LAT RETNLB HMMR MCM10 PTPN22 TREM2 EFCAB11 KNG1 SPN PSTPIP1 KIAA1524 SLFN12L CKAP2L SPAG5 PRC1 ASPM CHIT1 GZMK RAD51 LCK EVI2A DBF4 IL2RA SYT12 IL2RB SYT10 DTL FSBP FOLR2 C1R ARHGAP11A PPM1N UHRF1 KHDC1L SAA2-SAA4 TTK KIAA0101 COCH FYB CDC45 ADAMTS4 FCGR1A EXO1 DHX58 CCL5 FBXO5 CCL4 CCL2 CCL1 IGF2BP3 SPDL1 INSL6 ARL11 ESCO2 IL1R2 RSAD2 CDC20 C14ORF80 NEIL3 LACC1 KIF20A FAM64A KIF20B CCNF HSF2BP CALML5 RAD54B NSL1 SFRP1 AKAP4 LRP8 CHEK1 RACGAP1 IFI16 RAD54L SLAMF9 SLAMF8 SLAMF7 E2F8 MSR1 ZRANB3 SLC11A1 SH2D1A XRCC3 GDF3 HLA-A IFI44 HLA-E HLA-F TPX2 STAG3 PLA1A IL1RN GFI1 LRR1 IFIT2 IFIT1 IFIT3 BRIP1 DPF1 TREX1 IL12B APOD CCR2 APOBEC1 CCR1 CDT1 IL10 CYP7B1 PALB2 LILRB4 VAV1 ANLN DEPDC1 TLR7 IGSF6 REG3G KIF11 TOP2A KIF15 SECTM1 BRCA1 CD3G CTSW CTSS CLEC7A MIS18BP1 CTSK FCER1G CCR5 TRAIP SPC24 CCNE2 CCNE1 CMPK2 TRIP13 CD48 TACC3 SAA1 AUNIP DNASE1L3 SPC25 C1QC C1QB C1QA DSCC1 PRIM1 CD5L CXCR6 MKI67 AIF1 CST7 C17ORF53 CPN2 CXCR3 GSG2 FAM3B IFNB1 NUSAP1 LAIR1 GINS2 CA13 ZBP1 EOMES GEN1 GINS1 UBE2C CD72 CRTAM ARHGEF39 IGJ SLFN13 UBE2T POLE2 BUB1B FANCD2 KIF4A TGFBI CD300C CD69 CD86 CD84 ZWILCH RGS16 AURKA AURKB TBX21 HIST1H2AE KNTC1 GAS2L3 HIST1H2AA HIST1H2AD HIST1H2AC KIF22 STIL NKG7 CKAP2 CYBB ISG15 KIF23 SELE UPK3A KIF18A CCNA2 KIF18B CD8B CD8A KIF2C MXD3 LGALS3BP CABP4 ARHGAP19 DNPH1 IL18RAP CCNB2 EME1 CCNB1 RGS1 CLSPN UBD KLRC1 KDM4D MMP8 OAS1 SGOL1 TICRR IL6 OAS2 OAS3 TNIP3 IFNG IRF7 C9ORF169 BCL2A1 CCL3L3 CKS1B LMNB1 CXCL2 HMGB2 CXCL3 PLD4 HK3 CXCL6 SIRPB1 CYP26B1 CA7 LPXN ECT2 FAM83D HIST1H1D RRM2 GIF HIST1H2AJ H2AFX POLQ DCK SCIMP SHCBP1 PSRC1 ACKR1 IFIT1B ERCC6L RTP4 CXORF21 USP18 KRT86 OASL IRG1 POLE SGOL2 KYNU TSHB
SARS Perturbation Down Genes Mouse Lung from GSE68820:GPL7202:2 MRGPRX3 SEPT3 OSCAR NR5A1 NKPD1 C12ORF68 CD207 CYP1A1 FAM181B TRIM10 SPACA7 MDFI FCER2 PRDM8 TEX40 CHRM2 PNLIPRP1 PON1 HBB MOGAT1 HEPACAM2 MB DHRS7C EMILIN3 ANKRD33 GPR113 SNCA FAM83B PAQR9 NTRK2 IL36G FMO3 FABP3 CDH16 NEUROG1 FABP1 LRRC3B CST9L ALAS2 GRIA1 CLEC12B BEX1 DOC2B C15ORF60 UPK2 C5ORF28 GDPD2 ASGR1 SLC4A1 PLA2G5 KCNA6 CHRDL1 SUV420H2 FSTL4 CNR1 CD19 CYP2F1 CCL17 TGM4
SARS Perturbation Up Genes Mouse Lung from GSE68820:GPL7202:3 COL24A1 ZNF705A PASK PDYN DEPDC1B MTHFD2 GPR162 ASF1B ANKLE1 ATF3 NPRL3 C3AR1 NCAPG CH25H FAM132B APOL6 KNSTRN S100A14 GBP5 GTSE1 GBP4 EPSTI1 PRR11 PLK1 CYP4F2 MASTL DHFR SAPCD2 LGMN GTSF1 CFB MS4A7 CDCA2 CDCA3 CDCA5 NCAPG2 CDCA8 LY9 CFP SMC2 HPX C2 CHTF18 C3 SPIC GPR176 PLAC8 FIGNL1 OCSTAMP BARD1 TCF19 CENPW LRRC25 PHF11 FCRL5 IL10RA PRSS16 CDC6 CENPE CENPF MMP12 COL3A1 CENPH SLC7A8 SIGLEC1 CENPI INCENP MMP19 CENPK CENPM CENPN CENPP PHF19 CDKN3 IL18BP SKA1 PARPBP MEFV IQGAP3 SKA3 RAD51AP1 CHL1 TK1 PBK TIMP1 HCRT CEP55 DLGAP5 HELLS STAT1 STAT2 PGAM2 EMR1 GPR31 GPR141 MS4A6A GATM FABP7 AADAC HCLS1 NCAPD2 CKS2 TIMELESS SLC29A3 CCL13 LOC101929327 GRN PTAFR AOAH TMEM54 CENPA UNG TMEM143 PRSS22 IFIH1 NUF2 GPNMB AGR2 NEFH ZNF442 SEPT12 LAG3 TAP1 CDC25C CXCL10 ITGA10 MELK CLEC4D CXCL13 CLEC4E PSAT1 CLEC4A PDCD1 MAD2L1 CD177 ALDH1L2 CASC5 GPR65 TNF C1ORF112 HPGDS ADORA3 HAS3 MISP IL12RB1 BCL2L15 CCDC18 FANCI C11ORF82 FAM26F FBXO39 LY86 MAFB NDC80 MMS22L CLEC6A LHX2 KIFC1 CNGB3 BIRC5 LCN2 TROAP XAF1 GPR84 FOXM1 CHAF1A CHAF1B CLEC5A TNFRSF9 OIP5 SLC37A2 XCL1 EIF2AK2 AMBP FCGR2A FCGR2B ESPL1 MCM5 CDK1 MTFR2 AAK1 SLC26A4 MCM2 RETNLB HMMR MCM10 TREM2 EFCAB11 KNG1 ORC1 KIAA1524 CD300LF SLFN12L CKAP2L SPAG5 PRC1 ASPM CHIT1 RAD51 EVI2A IL2RA SYT12 MAB21L3 DTL FSBP C1R ARHGAP11A UHRF1 KHDC1L SAA2-SAA4 TTK KIAA0101 ITGAM CDC45 ADAMTS4 FCGR1A EXO1 DHX58 CCL4 CCL2 CCL1 SPDL1 TMEM52B ESCO2 IL1R2 RSAD2 PCDH20 CDC20 C14ORF80 NEIL3 LACC1 SLPI KIF20A FAM64A KIF20B NAIP IFITM3 FGL1 CCNF HSF2BP RAD54B NSL1 SFRP1 HERC6 CHEK1 RACGAP1 IFI16 RAD54L E2F1 SLAMF9 SLAMF8 SLAMF7 E2F8 MSR1 ZRANB3 SLC11A1 XRCC3 GDF3 HLA-A IFI44 HLA-F TPX2 STAG3 SPRR1A PLA1A IL1RN LRR1 PREP IFIT2 IFIT1 IFIT3 BRIP1 DPF1 TREX1 IL12B APOF APOD CCR2 APOBEC1 CCR1 CDT1 CYP7B1 LILRB4 ANLN IL1B DEPDC1 TLR7 SLU7 IGSF6 REG3G KIF11 TOP2A KIF15 SECTM1 BRCA1 CTSS CLEC7A MIS18BP1 CTSK FCER1G CCR5 TRAIP SPC24 CCNE2 CCNE1 CMPK2 TRIP13 KIZ TACC3 SAA1 AUNIP SPC25 C1QC C1QB C1QA DSCC1 PRIM1 CD5L MKI67 AIF1 C17ORF53 CPN2 CXCR3 DMBT1 GSG2 IFNB1 NUSAP1 LAIR1 GINS2 CA13 ZBP1 GEN1 GINS1 UBE2C CD72 ARHGEF39 IGJ SLFN13 UBE2T POLE2 BUB1B FANCD2 KIF4A TGFBI CD300C SUCNR1 ZWILCH RGS16 CHRNA7 AURKA AURKB HIST1H2AE KNTC1 GAS2L3 HIST1H2AA HIST1H2AD HIST1H2AC DDX58 KIF22 STIL CKAP2 CYBB ISG15 KIF23 SELE UPK3A NMRAL1 KIF18A CCNA2 KIF18B KIF2C MXD3 LGALS3BP DNPH1 BRINP1 TGM1 CCNB2 EME1 CCNB1 RGS1 CLSPN UBD MLKL MMP8 PYCR1 NAV3 OAS1 SGOL1 TICRR IL6 OAS2 OAS3 IFNG ALPL IRF7 C9ORF169 CCL3L3 TNFAIP6 ALOX15 CKS1B LMNB1 CXCL2 CXCL3 PLD4 CXCL6 SIRPB1 LPXN CPXM1 ECT2 FAM83D HIST1H1D RRM2 HIST1H2AJ H2AFX POLQ DCK SCIMP SHCBP1 PSRC1 ACKR1 IFIT1B STEAP4 ERCC6L RTP4 USP18 OASL IRG1 POLE SGOL2 ALDH1B1
SARS Perturbation Down Genes Mouse Lung from GSE68820:GPL7202:3 SFTPB AASS HMGCS2 AXIN2 DCDC5 SEPT3 NR5A1 C12ORF68 SCGB3A1 CD207 AKNAD1 OR4C12 TRIM10 SPACA7 NRN1 CHRM2 PON1 CPNE5 MESP1 HBB MOGAT1 HEPACAM2 EMILIN3 GPR113 SNCA FAM83B DACT2 PAQR9 S100G WNT10B IGFBP6 SLC32A1 HBG2 LGI3 CNPY1 FMO3 SNX22 RNASE4 CYP4F8 GNAL CDH16 RAMP1 NEUROG1 FABP1 SMIM23 CST9L ALAS2 GRIA1 CLEC12B BEX1 C15ORF60 UPK2 GDPD2 ASGR1 SLC4A1 STON1 PLA2G5 CHRDL1 CCDC129 LTBP4 CST8 LYZL4 CACNA1G EPPIN-WFDC6 SUV420H2 ACOXL CDK5RAP1 CYP2F1 CCL17 TGM4
SARS Perturbation Up Genes Mouse Lung from GSE68820:GPL7202:4 GBP7 GBP6 SP110 IL1R2 BTBD16 BTBD17 RSAD2 ZNF705A PLEKHA4 PPA1 UNC93A PDYN PML MTHFD2 LACC1 NINJ2 TRIM15 IDO1 ATF3 IFITM3 C3AR1 TIFA NOD2 UBE2L6 SFRP1 CLDN2 ARNTL CH25H PNP APOL6 HERC6 IFNL3 IFI16 S100A14 SLAMF8 SLAMF7 GBP2 GBP5 GBP4 EPSTI1 MSR1 EGR1 BATF2 EGR4 DAXX GADD45G TEX19 IFI44 PARP14 PARP11 PARP12 ARC FOSL1 TPX2 PARP10 KLHDC8A GJB5 SPRR1A PTGES PLA1A GTSF1 CFB MS4A7 IL1RN GLDC DOC2B PCDH10 IFI35 PLA2G7 IFIT2 IFIT1 HPX C2 LYPD8 IFIT3 SPIC IL4I1 LIPG RNF213 HELZ2 PLAC8 OCSTAMP PDE2A ARSI TREX1 PPY IL12B A2M APOF APOD APOBEC1 WARS GPR15 LRRC25 IL10 PHF11 DUSP2 TNFRSF12A CCL20 NMI TMEM171 CYP7B1 LILRB4 TMC5 IL1A IL1B SLC7A8 SLCO4A1 SIGLEC1 MMP19 HAP1 MITD1 TLR3 TMEM106A IL18BP SERPINA3 PTPRT MEFV TINAGL1 SECTM1 LRRC4 ADM TMPRSS3 SLC7A11 AREG SOCS3 SOCS1 TRIM6 CHL1 TIMP1 NFIL3 FCER1G CCR5 TOR3A GPR35 STAT1 ARG1 STAT2 GCH1 CD180 GPR31 SLC39A14 F3 PARP9 GPR141 F9 MS4A6A DHRS9 FABP7 CMPK2 ANGPTL4 AIDA SAA1 DNASE1L3 CCL13 LOC101929327 GRN CSTA CCL11 CDKN1A IL24 PTAFR IFNA4 AMIGO3 OGFR AOAH AIF1 PRSS22 IFIH1 PSMB8 JPH3 NAMPT NPY DMBT1 SLC17A6 IFNB1 XDH AGR2 CCL19 CA13 ZBP1 LAG3 GDF15 CD72 RASL10B AOC1 DIO2 TAP1 LGALS9B CXCL10 SLFN13 CLEC4D CXCL13 CLEC4E PSAT1 FAP TRAFD1 TGFBI PDCD1 CD69 RHCG CD177 CD86 CSF3 RGS16 CHRNA7 GPR65 TNF ASAP3 SAMD9L RAB20 BASP1 HAS2 HAS1 MISP IL12RB1 BCL2L15 MORC1 C11ORF85 PSAPL1 GCKR SLC15A3 DDX58 FAM26F FBXO39 ARID5A FST INHBA ISG15 SELE MAFB ISG20 MYD88 SELP NT5C3A LOX LHX2 TARM1 CNGB3 HPSE LCN2 ZNF536 XAF1 CALCB CD274 C5AR1 DDX4 LGALS3BP TACSTD2 CABP4 C20ORF141 PLAU GPR84 SLC2A6 NTS TGM1 GLIPR2 MMP25 HCAR2 RGS1 CLEC5A UBD TNFRSF9 PIM1 CLCA1 MLKL KL MMP8 SLC37A2 MRGPRX3 XCL1 MMP3 RNASE10 EIF2AK2 AMBP GFPT2 NAV3 OAS1 SMC1B C19ORF80 IL5 VCAN IL6 RASA4 OAS2 IRF5 OAS3 TNIP3 IFNG BCL3 ALPL IRF7 SLC26A4 NFKBIE C9ORF169 RETNLB UBA7 CCL3L3 TNFAIP6 MCM10 CXCL2 NLRC5 TREM1 ADAR CXCL3 HK3 CXCL6 KNG1 SIRPB1 PSTPIP1 NRIP3 CASP4 DRD4 SLFN12L MUC5B FGG DCK SCIMP MCOLN2 IRGM CHIT1 GZMK EVI2A HSH2D ACKR1 AIM1 SYT12 ALDH1A3 IFIT1B OR2V1 APOC2 HAND2 MAB21L3 PTX3 KCTD19 STEAP4 RTP4 CXORF21 TCIRG1 THBS1 SAA2-SAA4 TTK USP18 OASL SAMHD1 COCH IRG1 ADAMTS4 FCGR1A ALDH1B1 DHX58 CCL5 TRIM25 CCL4 SLC25A22 CCL2 TNNI1
SARS Perturbation Down Genes Mouse Lung from GSE68820:GPL7202:4 CD163 KRT5 ENTPD8 CIDEC HPCAL4 GDF10 RBP7 SFRP2 SHISA2 LGALS12 HSBP1L1 YPEL1 ZNF711 EPHA1 CES1 PON1 DGKB GLT8D2 CALML3 RETN GPR155 SCUBE2 WIF1 KIAA1324 SCN7A PIPOX ALOX5 UCP3 ZNF704 CHP2 MICALCL CPA3 SLC15A1 WNT10B CHST8 EPHX1 TNNC2 GDF1 SLC6A15 UPK3A EFNA2 WBSCR17 SMO SNAI2 CDH16 PGPEP1L FREM2 PTGFR CPB1 BEX1 TRIL DIXDC1 CCDC129 C1ORF56 LCTL C1QTNF3 NETO1 CDH22 NDP CDH26 GSG1L LRAT SCN1A RIMKLB MAP2K6 FN3K PABPC4L AASS HMGCS2 SPACA1 KCNIP4 INMT SORD SPTB SEPT3 IQCH NAP1L5 VEPH1 TMEM35 KRT15 ITGA8 THRSP ATP13A4 VSTM2A SIGLEC8 MYH7 TMEM45B NRN1 RTN2 PNLIPRP1 SLC35F3 CELF5 SLC3A1 HEPACAM2 GPT SLC7A10 DBP CA3 SCN3A WNT2 TINAG GAL3ST4 TMED6 CNGA1 S100G ADIPOQ MAMDC2 NEGR1 SPAG4 GPR34 LGI3 CNPY1 KAZALD1 FMO3 ATP2B2 PER3 P2RX6 PPP2R2C IGDCC4 OCIAD2 ACKR4 PCOLCE2 CYP2E1 HCN1 ANGPTL2 SVOPL FABP1 HLF EPHB6 DDC LRRC17 KCNA6 CST8 SLC4A5 CPN2 PSD2 METTL7A CD59 CYP2F1 COLGALT2 KCNJ3 CTHRC1 TSHB
SARS Perturbation Up Genes Mouse Lung from GSE19137:GPL1261:1 GBP7 GBP6 RSAD2 HPCAL1 KRT8 KRT7 PPP2R1A SEPP1 PSMB9 HNRNPM ST5 MYL7 HNRNPK MYL2 MYL4 TEK RPL28 TMCC3 TMCC2 PFN1 CD200 IFITM2 EPAS1 IFITM3 EI24 HPGD RNF7 AKAP5 MYL12B AKAP2 PSMB10 ACTB DPYSL2 TFG IFI16 CAPNS1 KDR PXDC1 B2M GBP3 GBP2 GBP4 AFAP1L1 EGR1 GABARAPL1 DAXX TNNC1 FOXF1 TMA7 C9ORF69 IFI44 PARP14 ACER2 PARP12 FERMT2 MYL12A EHD4 VAMP8 RIPPLY3 RPS28 TNNT2 PSME2 PSME1 CRYAB RPS23 ITM2B ATF5 ANAPC13 GLTP SPARC TTYH3 CTBP1 IFI35 TXN PCBP1 PTTG1IP IFIT2 GATA2 IFIT1 ICAM1 AARD RPL8 IFIT3 TNS1 RNF213 HELZ2 PLAC8 SOX18 STMN1 TSPAN7 PCBP2 SOX17 FTH1 IER2 JUNB RPS12 IER3 GSTM5 PSENEN ACE JUN ANXA3 RDX PHF11 DUSP1 PTGES3 JUP TSC22D1 ANXA5 AKR1A1 KLHL5 RHOG RHOB TOX2 TPPP3 PTPRB ID3 RAPGEF2 CLDN18 RAB7A SGK1 DAZAP2 CLIC5 BTG2 CLIC4 SLC44A2 PTPRM ADIPOR1 TOR1AIP1 MED18 SOCS3 MAP1LC3A MAP1LC3B SNX3 RRAS GPR116 CLIC3 ATP6V1G1 ATP6V0E1 STAT1 ELOVL5 CDKN2B FMO1 FOS BGN PARP9 TJP2 FKBP1A TJP1 CMPK2 SMAGP LAMTOR3 RAMP2 SIPA1 LOC101929327 GRN RPLP2 GSTP1 GDPD3 TUBA1A GNAI2 IFIH1 AKAP12 TUBA1B UBL3 CTNNA1 RAC1 XDH MYOZ2 SPTAN1 LMO2 SHISA5 SDHB LGALS9B PNRC1 PPP1CB LRFN4 CXCL10 EEF1A1 MORF4L2 LY6E SRSF4 CHMP4B RNF187 SNRPB SRSF9 RELA PLVAP FAM129B ZFP36L1 MRFAP1 PEBP1 AHR COX6A2 SAMD9L FGD5 SLC9A3R2 CDH5 ZFP36 SCN7A MYH14 SPTSSA RPS2 FGF23 HMGN1 ARHGEF12 ATP6V0C ZCRB1 IGFBP4 EEF2 EIF2S3 SMAD6 DGKZ HOPX COASY ISG20 GNB1 RHEB SELK GNB2 CDC42EP1 MAFK XAF1 FTL CALCRL DDX5 COX17 UQCRB ACTG1 ETS1 RASGRP3 AGER TMEM100 TGM2 CNN2 UBC BAG1 NPPA PLS3 UNC45B EGFL7 DTX3L HMGCS1 CAV2 MSN CAV1 APOA4 OAS1 SEPT4 BMP6 TMBIM1 MYH1 IRF1 NFKBIA SMDT1 ARL2BP SYF2 ALB IRF2 RBMS1 IRF9 IRF7 R3HDM2 SHANK3 BMPR2 SLC25A4 NUFIP1 GSK3A YWHAE ATP5J CLEC14A HSPB1 CYR61 PLTP RABGGTA CA2 LASP1 MB TMEM204 CAPZB GRASP NDUFA3 CYP4B1 YWHAZ IRGM KLF4 KLF2 CLDN5 CTDSP1 SNRK IFIT1B TXNIP HIST1H2BI EIF3G TPT1 NCKAP5 KRT80 CEBPD RTP4 HSP90AB1 THRA SEMA3C YBX1 U2AF2 YBX3 ATP5G3 ACTC1 USP18 TSPAN13 OASL SAMHD1 CYTH3 ARHGDIA THBD EDNRB FAM73B MAPK3 TRIM25 CYYR1 CHCHD2
SARS Perturbation Down Genes Mouse Lung from GSE19137:GPL1261:1 PDGFRA NPNT RPL22 RPL21 RPL23 RPS7 MPEG1 FBXO16 IGJ ATP1B1 RPSA PPIA SCD MGP SCGB1A1 FKBP9 UQCRC2 RPL26 DPEP1 S100A4 MXRA8 RPL27 PPIB CES1 ENPEP FIGF CYFIP1 RPL11 PON1 TAGLN RPL10 CD81 RPL13 SERPINE2 RPL12 HP CPNE7 WBP5 UCP1 RPS4Y1 CTGF LAMP2 C16ORF90 SNRPD2 LAMP1 SH2B1 RPS5 RBBP7 RPL19 MYH10 CHIA HLA-DRB5 F2R SLC34A2 RABL2A SLC16A11 NR1D2 COX7A2L RPS26 RPS29 NACA RPL27A SPECC1L SERPING1 TAGLN2 RPS21 MFGE8 ITM2C RPS24 RPL5 GABARAP RPL3 RPL4 DPT WFDC2 C14ORF166 MGST1 COX7A2 RPL7 EFEMP1 AMMECR1L EEF1B2 RPS15 C5 RPS18 RPS17 GNG10 BPIFA1 LGALS1 ALCAM RGS2 RPS19 RPS10 LRAT RPL38 RPS14 RPS13 SFTPB EGFL6 SFTPC SFTPD RPL13A CP LYZ VEGFA CYB5A COL3A1 NPC2 OGN RPL37A SCGB3A1 HLA-DQB1 ITGA8 SCGB3A2 ZNF780A VIMP LUC7L3 YWHAB BTG1 RPN1 NREP CTSS ACAT2 DBP ADAMTS15 DRAM1 SH3BGRL DVL1 CTSH RPS15A RPS27A HSD11B1 CTSC HLA-DQA1 S100G SLC36A2 NPM1 LIMCH1 CCT2 C2ORF53 BCAP31 H2AFZ MDH2 MAMDC2 FMO2 RNASE4 DCN ERP44 KLF9 FABP4 NGFRAP1 FABP5 CAT SNX17 ALDH1A1 GPAM EIF3K P4HB EIF3I SFTPA1 PDE5A PLIN2 PCOLCE2 EIF3E HLF RPLP0 GDI2 POLDIP3 NDUFA13 DMKN RPL10A CRIP1 PKD2 CST3 TAF7L MAT2A PRRG3 CYP2F1 RPL7A CCT5
SARS Perturbation Up Genes Mouse Lung from GSE19137:GPL1261:2 GBP7 GBP6 RSAD2 HPCAL1 KRT7 PISD SEPP1 PSMB9 MAPK11 MYL7 MGP MYL2 C19ORF43 PSMC2 TEK TMCC2 PFN1 IDO1 VPS28 CD200 ATF3 IFITM2 EPAS1 IFITM3 POMP MYL12B AKAP2 PSMB10 RNF114 PNP ACTB IFI16 PSMD3 CAPNS1 KDR B2M GBP3 GBP2 GBP4 EGR1 COX8A DAXX TNNC1 MANF HLA-A IFI44 PARP14 PARP12 MYL12A EHD4 VAMP8 TNNT2 PLSCR3 PSME2 PSME1 CRYAB ITM2B ATF5 GABARAP SPARC IFI35 TXN PCBP1 IFIT2 IFIT1 ICAM1 IFIT3 MRPL20 RNF213 HELZ2 LGALS3 PLAC8 PRDX5 SOX18 TSPAN7 FTH1 ARL6IP4 APOD IER3 PSENEN RHOA WARS JUN ANXA3 PHF11 DUSP1 ANXA5 TUBB NMI AKR1A1 EMP3 LYVE1 NME2 KRT18 ID3 CLDN18 DAZAP2 CLIC5 CLIC4 TMEM160 LITAF TOR1AIP1 CTSS LDHA SNX3 RAP1B PRX RRAS C1QBP SH3BGRL3 GPR116 FCER1G CLIC3 DYNLL1 STAT1 TMEM176B FOS SERPINB9 PARP9 FKBP1A PSMA2 COL4A2 CMPK2 RAMP2 CCL13 GRN CDKN1A RPLP2 GSTP1 GDPD3 TUBA1A GNAI2 IFIH1 PSMB8 PSMB5 PSMB6 TUBA1B RAC1 TSPO XDH MYOZ2 LMO2 ZBP1 TPM3 SHISA5 SDHB LGALS9B PPP1CA CXCL10 EEF1A1 IFI44L PPIA NUPR1 TRAFD1 LY6E FAU S100A6 ISCU CHMP4B SQSTM1 SNRPB SRSF9 RELA PLVAP FAM129B IHH SAMD9L COX6A1 SLC9A3R2 ZFP36 LAPTM4A BASP1 CCND1 RPS2 ATP6V0C CYBA EEF2 HOPX ISG20 RHEB ARPC3 SELK ARPC2 GNB2 DRAP1 MAFK UBA1 XAF1 FTL C11ORF96 CD274 UQCRB LGALS3BP ACTG1 AGER TGM2 CNN2 UBC BAG1 NPPA AP2M1 GPX1 EGFL7 EIF5A DTX3L MSN CAV1 OAS1 TAPBP IRF1 SMDT1 DNAJC8 SYF2 NDUFS6 BCL6B NDUFS3 IRF7 TMBIM6 ATP5J CXCL3 HSPB1 ATP5D PLTP CA2 YWHAH PPP1R14A NDUFA3 CYP4B1 IRGM KLF2 TRAPPC6B CLDN5 IFIT1B VDAC2 EIF3G CD226 PFDN6 TPT1 KRT80 RTP4 HSP90AB1 YBX1 ATP5G3 ACTC1 USP18 OASL SAMHD1 ARHGDIA FCGR1A SUMO2 CCL5 MAPK3 TRIM25 RPL7A
SARS Perturbation Down Genes Mouse Lung from GSE19137:GPL1261:2 RPL22 RPL21 CNBP RPL23 SLC12A2 EID1 HNRNPK SCD SDPR SPINT2 SCGB1A1 VIM UQCRC2 RPL26 NSMF SPARCL1 RPL27 CES1 ENPEP RPL11 PON1 KDELR1 CCNI RPL10 ADH1C RPL13 SERPINE2 WBP5 ABRACL RPS4Y1 PABPN1 RPL15 RPL14 RPL18 NDFIP1 JUND CHIA ATP6AP2 TMEM50B SLC34A2 ARRDC3 COX7A2L PTP4A2 RPS26 RPS29 RPS28 RPL27A RPS21 RPS20 ITM2C RPS25 RPS24 RPL5 RPL6 RPL3 RPL4 RPL35 WFDC2 C14ORF166 MGST1 RPL9 RPL7 RPS15 C5 RPS18 RPS17 GNG10 ALCAM RPS19 SCP2 PRDX1 DHX15 EPC2 GLUL RPS10 LRAT RPL38 RPS12 RPS11 RPS14 RPS13 SFTPB SFTPC TSC22D1 SFTPD TSC22D3 PLXDC2 LYZ VEGFA RHOQ COL3A1 PABPC1 DDR2 BTG1 CETN2 OAZ1 ACAT2 HINT1 SH3BGRL CCKAR SH3PXD2A C6ORF57 RPS15A RPS27A HSD11B1 CTSC HLA-DQA1 CCT4 MBNL1 NPM1 MAMDC2 G0S2 FMO1 FMO2 BGN RNASE4 PTGR1 TM9SF2 FABP4 HNRNPUL1 FABP5 SNX17 HNRNPH1 GPAM GDI2 TCF21 METTL7A MDH1 CYP2F1 CCT5 PAIP2 GSN PDGFRA CD74 NPNT RPS8 RPS9 RPS7 ATP1B1 RPSA HIPK3 PPP1CB MORF4L1 GSTA3 FKBP9 PDCD4 DPEP1 MYADM PPIB NDUFB11 CD81 HP TOMM20 GIMAP8 CTGF PCNP ITPRIPL2 LAMP1 SCN7A HCFC1R1 SPTSSA RPS5 RBBP7 MYH10 F2R SHFM1 RABL2A TBCA QDPR NACA SPECC1L DYNLRB2 LRRC58 DPT LPL LTBP3 SRP14 COX7A2 EFEMP1 EEF1B2 RGS2 FNTA TMEM109 HADH PLS3 PAICS RPL13A INMT NAP1L1 CYB5A MYH1 SP3 OGN IMPAD1 RPL37A SCGB3A1 ITGA8 SCGB3A2 ZMYND11 VIMP RBMS3 LUC7L3 DDX3X YWHAB NDUFB5 NDUFB3 BRK1 NREP DBP ADAMTS15 DRAM1 ATP5H TMEM204 DVL1 C10ORF10 COX4I1 NAE1 MCL1 SMIM15 LIMCH1 DDX17 H2AFZ DYNLT3 TP53INP1 DCN KLF9 CAT ALDH1A1 EIF3I EIF3F SMPDL3A SFTPA1 PDE5A PCOLCE2 SNRNP48 MATR3 EIF3E FHL1 RPL10A TTN PKD2 SEPT7 MAT2A PRRG3 BNIP3 CHCHD2
SARS Perturbation Up Genes Mouse Lung from GSE19137:GPL1261:3 HPCAL1 KRT7 PPP2R1A ACSL5 HN1 SEPP1 MYL7 HNRNPK SPINT2 PSMC2 FDX1 SLPI VIM NSMF RPL28 PREB CDK16 RAN IFITM2 EPAS1 IFITM3 KDELR1 RPL13 AQP5 IL2RG AKAP5 AQP1 MYL12B DHX30 ACTB KRTCAP2 CHORDC1 GNG5 PABPN1 C19ORF59 RPL14 PXDC1 S100A16 B2M CCNL1 AFAP1L1 EGR1 NDFIP1 CNTD1 JUND HLA-DRB5 ATP6AP2 TALDO1 MANF TMA7 HLA-A IFI44 EHD1 BPIFB1 MYL12A RIPPLY3 RPS28 TCN2 JTB CHST1 RNPS1 RPS21 CRYAB ITM2B ITM2C ATF4 GLTP TTYH3 RPL35 IFI35 TXN TEX261 PCBP1 PTTG1IP GATA2 IFI30 ICAM1 ICAM2 C3 IFIT3 HSPH1 HELZ2 LGALS3 FAM134A PLAC8 CYP2B6 STMN1 IER2 FAM53B JUNB RPS12 IER3 FUCA1 LYPLA2 JUN ANXA2 ANXA3 PHF11 DUSP1 PTGES3 ANXA5 TSC22D3 MRPL28 EMP2 AKR1A1 IL18 LYVE1 TUBB2A NME1 NME2 GPRC5A TOX2 PRPF19 FXYD5 KRT18 HLA-DQB1 JDP2 RAPGEF3 CRELD2 CALR GPI LIMS2 SLC44A2 ARF1 RPN1 TMEM160 PQBP1 OAZ1 LIMD2 CTSS MAP1LC3A TRMT112 HINT1 RAP1A MAP1LC3B SNX3 CLEC7A PRX C1QBP SH3BGRL3 GPR116 RPS27A HLA-DQA1 CCT3 ATP6V1G1 ATP6V0E1 DYNLL1 BCAP31 MDH2 PRMT2 TMEM176B FMO1 FOS LAPTM5 FAM189A2 RAB11A COX6B1 PSMA6 TJP2 FKBP1A COL4A1 CTU2 SNX17 COL4A2 LAMTOR1 RAMP2 TKT ARF6 ERRFI1 COX5A GRN HEXA CDKN1A NDUFA13 RPLP2 PIGQ GSTP1 GDPD3 TUBA1A GNAI2 ADAMTSL2 CST3 RPL18A TUBA1B UBL3 PSMB4 CTNNA1 MYEOV2 TSPO XDH METTL9 SPTAN1 GSN KLHDC3 SLC39A1 CD74 RPS8 TPM3 ZBTB16 MPEG1 SHISA5 IGJ TYROBP RPSA PPP1CA TUBA4A TMEM259 FAP LY6E APLNR CHMP4B PKP4 RNF187 PPIB SNRPB GRINA PLVAP NDUFB11 SEPW1 SCNN1A MRFAP1 GIMAP4 PEBP1 CLU CNDP2 COX6A1 SLC9A3R2 ZFP36 ITPRIPL2 PDPN LAMP1 EFNB1 RBBP4 EMC3 HCFC1R1 MYH14 CFL1 ROMO1 RPS2 NDUFV3 HMGN1 CD97 ATP6V0C ATP6V0B F2R ZCRB1 CYBA PGD DGKZ HOPX QDPR RGCC REEP5 ARPC2 ESAM XAF1 MFGE8 MXD4 CSF1R COX17 UQCRB BRI3 RTKN2 ACTG1 ARL3 FAM107A LTBP3 SRP14 CORO1A AGER COX7A2 TGM2 CNN2 UBC MPC2 FHAD1 TMEM109 CAMTA2 PIM3 IGFBP7 ACAA1 EGFL7 HSP90AA1 HSPA5 HSPA8 CAV1 NDUFC1 TMBIM1 NFKBIA ACTA1 NPC2 NDUFS7 RPL37A ALB IL3RA PEX6 MYH9 IRF7 BLMH TMBIM6 EIF4E3 MYH6 VIMP NDUFB7 NDUFB6 NPR3 BRK1 HSPB1 CYR61 ATP5D PLTP SYNGR2 DNAJB1 MARVELD1 PSAP TMEM204 CA4 MKNK2 C10ORF10 COX4I1 MCL1 HIST1H1C DSP PLEKHG2 NDUFA5 ADRM1 H2AFY CYP4B1 ALOX5AP NDUFA2 NDUFA1 KLF4 SOD1 KLF2 DNAJA1 CLDN5 DDIT4 IFIT1B TXNIP HIST1H2BI EIF3G RP9 STUB1 SMIM22 ITGB2 CEBPB KRT80 CEBPD RTP4 HSP90AB1 FURIN DCTN2 YBX1 EMC10 U2AF2 YBX3 TSPAN13 ARHGDIA THBD EVA1B MAT2A BMS1 SAP30L MAPK3 CDIPT CHCHD2
SARS Perturbation Down Genes Mouse Lung from GSE19137:GPL1261:3 MYLIP RPL22 RPL21 PDHX RPL23 RPS7 FBXO16 PISD ATP1B1 PPIA MGP NUPR1 SCGB1A1 FEZ2 CAPZA2 UQCRC2 FAU CDO1 CES1 ENPEP RPL11 PON1 CCNI TAGLN RPL10 ADH1C HP RPL36AL RPS5 RPL19 MYH10 PSKH1 CHIA SLC34A2 RABL2A DSTN NR1D2 COX7A2L RPS26 WNK1 NACA SPECC1L DYNLRB2 TCF4 RPS23 RPS24 RPL3 LRRC58 NAB1 DPT WFDC2 MGST1 RPL7 MYLK EEF1B2 RPS15 C5 RPS18 RPS17 LGALS1 RGS2 RPS19 LRAT TNS3 RPS14 TCP11 ANXA1 GSTM1 SFTPD INMT NAP1L1 LYZ VEGFA MYH1 COL3A1 OGN ITGA8 SCGB3A2 AGO1 PABPC1 ZNF780A MBLAC1 DDR2 DDX3X CSDE1 NREP DBP LBH DRAM1 SH3BGRL CCKAR SH3PXD2A STK38 HSD11B1 NPM1 LIMCH1 C2ORF53 CCDC57 NDUFA6 MAMDC2 FMO2 FNDC3B RNASE4 SERPINB6 SELENBP1 PTGR1 DCN UQCRHL TJP1 FABP4 NFIB ALDH1A1 EIF3I VDAC3 PDE5A PCOLCE2 EIF3E TPT1 HLF RPLP0 FHL1 FSTL1 TMEM260 KCNA7 RPL10A ATP5G3 CRIP1 PKD2 RBM3 AKAP12 METTL7A BNIP3 CYP2F1 RPL7A
SARS Perturbation Up Genes Mouse Lung from GSE19137:GPL1261:4 GBP7 GBP6 PRELID1 RSAD2 KRT8 KRT7 PPP2R1A ACSL5 PSMB9 MGP VIM RPL28 RAN IFITM3 C1ORF198 AQP5 IL2RG MYL12B PSMB10 PNP ACTB PRPSAP1 KRTCAP2 GNG5 IFI16 CAPNS1 C19ORF59 PXDC1 MAL2 B2M GBP3 GBP2 GBP4 EGR1 HLA-DRB5 ATP6AP2 TMA7 HLA-A IFI44 MYL12A RPS28 FASN SERPING1 PLBD1 PSME2 PSME1 CRYAB RGL2 ITM2B LXN MS4A7 GLTP SPARC IFI35 PCBP1 GNS IFIT2 IFI30 ICAM1 C3 IFIT3 RNF213 HELZ2 LGALS3 PLAC8 SOX18 GPR171 CYP2B6 FTH1 FAM53B IER3 SFTPB FUCA1 APOBEC1 PSENEN ANXA2 ANXA3 PHF11 DUSP1 ANXA5 TUBB EMP2 AKR1A1 EMP3 RHOG TUBB2A GPRC5A COL3A1 THEMIS2 FXYD5 KRT18 HLA-DQB1 CLDN18 CALR GPI LIMS2 TMED10 SLC44A2 OAZ1 LIMD2 CTSS MAP1LC3B SNX3 CLEC7A PRX RRAS SH3BGRL3 CTSH FCER1G CLIC3 HLA-DQA1 ELOVL1 STAT1 MDH2 CDKN2B PRMT2 TMEM176B FOS LAPTM5 BGN RNASE6 LRG1 SERPINB9 HCK COX6B1 FKBP1A COL4A1 MS4A6A SNX17 COL4A2 COL4A4 PLP2 UBE2V1 RAMP2 SIPA1 C1QB C1QA COX5A GRN ZNF692 HEXA CDKN1A NDUFA13 RPLP2 GSTP1 TUBA1A GNAI2 CST3 IFIH1 PSMB8 RPL18A TUBA1B UBL3 TSPO SPTAN1 HLA-DMA PHLDA1 CD74 TPM3 MPEG1 SHISA5 LMO7 TYROBP PPP1CA CXCL10 TMEM259 FAP TGFBI LY6E CHMP4B RNF187 SNRPB KANK3 FIGF PLVAP FAM129B SCNN1A CLU SAMD9L CNDP2 COX6A1 PDPN BASP1 CDH1 HCFC1R1 MYH14 CFL1 RPS2 NDUFV3 ATP6V0C KIF22 CHCHD10 LY86 EEF2 HOPX ISG20 COL6A1 REEP5 ARPC2 GNB2 COL6A2 LCN2 XAF1 MFGE8 CSF1R COX17 UQCRB NCF4 ACTG1 CORO1A AGER CSF2RA SAT2 TGM2 CNN2 UBC EFHD2 GYG1 IGFBP7 GPX1 HSPA8 EDF1 OAS1 TAPBP IRF1 FCGR2A NPC2 NDUFS7 EEF1G IRF8 IRF7 TMBIM6 CHI3L1 NUFIP1 SLC25A3 YWHAB HSPB1 CYR61 SIRPB1 ATP5D PLTP SYNGR2 LASP1 PSAP MKNK2 COX4I1 EIF4H HIST1H1C PLEKHG2 VWF H2AFY ALOX5AP PCOLCE IRGM KLF2 CLDN5 IFIT1B EIF3K EIF3F HIST1H2BI EIF3G RP9 ITGB2 KRT80 RTP4 HSP90AB1 USP18 SAMHD1 FYB ARHGDIA FCGR1A EVA1B GM2A MAPK3 TRIM25 CDIPT
SARS Perturbation Down Genes Mouse Lung from GSE19137:GPL1261:4 RPL22 RPL21 RPL24 CNBP RPL23 KIAA1462 SEPP1 EID1 PDCL3 SDPR SCGB1A1 SUB1 TEK UQCRC2 RPL26 RPL27 CDO1 CES1 ENPEP RPL11 PON1 HPGD TAGLN RPL10 SERPINE2 MSANTD4 ABRACL RPS4Y1 TPRG1L PREX2 RPL36AL PABPN1 VTI1B RPL15 RPL19 JUND TNNC2 SLC34A2 USMG5 NR1D2 COX7A2L RPS26 MYLPF RPL27A RPS21 RPS23 RPS25 RPS24 RPL5 RPL3 RPL4 MGST1 RPL9 VPS26A RPL7 RPL8 MRPL20 RPS15 GNG11 RPS18 RPS17 GNG10 RPS19 PRDX1 EPC2 GLUL RPS10 LRAT RPL38 GOLGA7 RPS12 RPS14 BTF3 SFTPD TSC22D3 LYVE1 LYZ RHOQ ALDH6A1 PTPRB ZNF780A DDR2 CETN2 CETN3 CSDE1 SH3BGRL GPR116 CD36 RPS15A RPS27A HSD11B1 NPM1 MAMDC2 G0S2 FMO1 FMO2 RNASE4 SERPINB6 TJP1 TM9SF2 FABP4 PSMA3 NRP1 WDR45B GDPD3 KCNA7 CRIP1 AKAP12 METTL7A CYP2F1 PAIP2 GSN RPS8 RPS9 RPS7 FBXO16 ATP1B1 HIPK3 PPP1CB EEF1A1 PPIA GSTA3 CAPZA2 FAU SRSF3 DPEP1 PF4 IVNS1ABP PHLDB2 GTF2B HP GIMAP8 CTGF PCNP ITPRIPL2 SCN7A EMC2 SPTSSA RPS5 RPS3 MYH10 NDUFV2 TRAPPC2 F2R TVP23B TBCA NACA DYNLRB2 NOP10 CALCRL LRRC58 DPT SLC2A4 SRP14 ARL1 ETS1 SAT1 EFEMP1 EEF1B2 PLS3 TCP11 PAICS VBP1 CAV2 CAV1 RPL13A INMT NAP1L1 CYB5A MYH1 SP3 OGN SCGB3A1 SCGB3A2 VIMP LUC7L3 BMPR2 SLC25A4 DDX3X ATP5J DBP DRAM1 ATP5H MB TMEM204 YWHAQ NAE1 SMIM15 C2ORF53 NDUFA6 DYNLT3 NDUFA4 NDUFA1 ZFP91 SELENBP1 DCN UQCRHL CFDP1 KLF9 CAT ALDH1A1 EIF3I VDAC2 SFTPA1 PDE5A PCOLCE2 SNRNP48 MATR3 EIF3E TPT1 EIF4A2 RPL10A TTN PKD2 SEPT7 RBM3 SUMO2 TNNI2 BNIP3 VPS35 CHCHD2 POLR2K RPL7A RBM7
SARS Perturbation Up Genes Mouse Lung from GSE19137:GPL1261:5 KRT4 HPCAL1 KIAA1462 PPP2R1A UPF3A HN1 SEPP1 MAPK11 DYNC1LI2 HNRNPK DDX39B SDPR VIM NSMF RPL28 EPAS1 IFITM3 KDELR1 RPL13 RPS4Y1 PSMB10 DHX30 NXF1 ACTB PRPSAP1 DPYSL2 PABPN1 KDR RPL14 S100A16 B2M CCNL2 CCNL1 RPL18 EGR1 CNTD1 JUND HLA-DRB5 NUDT16L1 COX7A2L BPIFB1 MYL12A EHD4 RPS29 RPS28 CYP2S1 RPL27A CHST1 RNPS1 RPS21 RPS20 CRYAB RGL2 SET GLTP RPL6 SPARC RPL4 TTYH3 TEX261 RPL9 RPL8 RPS15 HELZ2 PLAC8 SOX18 RASSF5 STMN1 PCBP2 FTH1 MYO18A RPL38 RPS12 RPS11 IER3 CSNK1A1 ANXA2 DUSP1 TUBB MRPL28 EMP2 AKR1A1 TOX2 PRPF19 ID3 RAPGEF3 PABPC1 MEGF8 GPI MZB1 DAZAP2 CLIC4 YTHDC1 SLC44A2 BTG1 ARF1 RPN1 TMEM160 OAZ1 LIMD2 MAP1LC3A FAM160B2 TRMT112 SNX3 PRX SH3BGRL3 GPR116 C16ORF54 SPTBN1 HLA-DQA1 BRD2 PRMT2 RFTN1 FMO1 FOS LAPTM5 BGN FAM189A2 ANO6 FKBP1A HNRNPUL1 SNX17 KIF26A KIF26B COL4A4 LAMTOR1 RAMP2 RAB3GAP1 TRUB2 COX5A GRN RPLP0 GDI2 RPLP2 PIGQ GSTP1 GDPD3 NUCKS1 TUBA1A GNAI2 GUK1 RPL18A TUBA1B RAC1 GSN KLHDC3 CD74 RPS8 RPS9 TPM3 ZBTB16 SHISA5 IGJ RPSA PPP1CA EEF1A1 TMEM259 FAP TGFBI LY6E FAU APLNR CHMP4B PKP4 SNRPB GRINA PLVAP SEPW1 ZFP36L1 GIMAP4 PEBP1 CLU GIMAP8 COX6A1 BASP1 CCND1 CDH1 EFNB1 HCFC1R1 CFL1 RPS2 NDUFV3 ARHGEF12 SMAD4 ZCRB1 HPS4 EEF2 PGD SUPT5H DGKZ HOPX QDPR REEP5 PITPNM1 ARPC2 FSCN1 FTL MFGE8 VCP DDX5 COX17 ACTG1 LTBP3 CORO1A ETS1 AGER EDC4 AMMECR1L CNN2 UBC GYG1 ACAA1 GPX1 UNC45B EGFL7 EIF5A MSN IRF1 NFKBIA NDUFS7 RPL37A EEF1G RBMS1 IRF8 MYH9 BLMH ZMYND11 TMBIM6 EIF4E3 MYH6 VIMP SLC25A3 YWHAB NDUFB7 USHBP1 STK4 CYR61 ATP5D PLTP SYNGR2 CA2 METTL14 LASP1 PSAP MKNK2 EIF4H WASF2 GRASP MCL1 HIST1H1C MARCKSL1 DSP CDK11A DDX17 GLRX5 H2AFY ANXA11 ATP2B1 YWHAZ KLF2 SNRK CTDSP2 TXNIP ANAPC5 EIF3F HIST1H2BI PDE5A EIF3G RP9 STUB1 SMIM22 SMARCD2 KRT80 LSP1 HSP90AB1 DCTN2 THRA YBX1 EMC10 U2AF2 YBX3 ATP5G3 TSPAN13 ARHGDIA ARHGDIB BMS1 MAPK3 TRIM25 CDIPT CHCHD2 RPL7A
SARS Perturbation Down Genes Mouse Lung from GSE19137:GPL1261:5 RPL22 RPL21 RPL23 MRPS18C PISD SCD MGP SCGB1A1 GLOD4 TEK UQCRC2 RPL26 SPARCL1 CDO1 CES1 ENPEP RPL11 PON1 TAGLN SERPINE2 WBP5 ABRACL GPR155 RPL36AL C16ORF90 SNRPD2 RPL15 S100A10 CHIA TMEM50B TNNC2 SLC34A2 ARRDC3 USMG5 ACADSB NR1D2 RPS26 VAMP8 SERPING1 RPS23 BEX4 CFH ACTL7B WFDC2 ATP5C1 MGST1 MRPL20 C5 RPS18 RPS17 GNG10 LGALS1 RPS19 SCP2 LRAT SFTPB SFTPC ANXA1 SSR3 SFTPD IL18 LYVE1 PLXDC2 LYZ VEGFA NME2 FXYD1 RHOQ ALDH6A1 COL3A1 ZNF780A CETN3 RPS27L SH3BGRL SEC61G C6ORF57 CTSH CD36 RPS15A HSD11B1 CTSC IL33 ATP6V0E1 ELOVL5 MAMDC2 G0S2 GSTO1 FMO2 UBE2E1 RNASE4 PGRMC1 PTGR1 FABP4 FABP5 PSMA2 PSMA3 RAB9A ERRFI1 OAT NRP1 FOXA1 FSTL1 CRIP1 CST3 METTL7A CYP2F1 PDGFRA CD164 NPNT RPS7 FBXO16 ACYP2 ATP1B1 PPIA NUPR1 GSTA3 S100A6 PMP22 MYADM PPIC PPIB CNTN1 CD81 GTF2B HP CTGF ATP5J2 LAMP2 LAMP1 SCN7A EMC2 MYH10 F2R IGFBP5 SHFM1 RABL2A DSTN TVP23B TBCA PICALM RGCC NACA COL6A3 DYNLRB2 PIN4 RAB5A NOP10 VCL CD151 UQCRB DPT LPL SRP14 COX7A2 RGS5 EFEMP1 RGS2 PLS3 EGFL6 VBP1 INMT NDUFC2 CYB5A OGN ITGA8 SCGB3A2 CYCS SERINC3 DDX3X SAR1B GLO1 NDUFB3 DBI DBP DRAM1 ATP5H TRIM46 S100G SMIM15 C8ORF59 LIMCH1 H2AFZ NDUFA6 DYNLT3 NDUFA4 NDUFA1 HAUS4 SELENBP1 DCN KLF9 DNAJA1 CAT ALDH1A1 P4HB VDAC3 SFTPA1 PCOLCE2 HLF FHL1 DMKN RPL10A TTN PKD2 THBD RBM3 SUMO2 PRRG3 BNIP3 CHCHD1
SARS Perturbation Up Genes Mouse Lung from GSE19137:GPL1261:6 NGDN KRT7 PPP2R1A SEPP1 PSMB9 MAPK11 MYL7 DDX39B SDPR SPINT2 CD9 FDX1 SLPI VIM RPL27 CDK16 RAN IFITM2 IFITM3 AQP5 IL2RG AQP1 MYL12B PSMB10 DHX30 ACTB KRTCAP2 PABPN1 C19ORF59 KDR S100A13 RPL14 PXDC1 S100A16 B2M CCNL1 RPL18 AFAP1L1 EGR1 NDFIP1 CNTD1 JUND HLA-DRB5 ATP6AP2 TALDO1 MANF TMA7 HLA-A VPS37C IFI44 ACER2 MYL12A RIPPLY3 RPS28 TCN2 RPL27A JTB CHST1 PLBD1 PSME2 RNPS1 PSME1 CRYAB ITM2B ITM2C ATF4 GLTP SPARC TTYH3 PIEZO1 IFI35 TXN PCBP1 GATA2 IFI30 ICAM1 ICAM2 IFIT3 MRPL20 HSPH1 HELZ2 LGALS3 PLAC8 STMN1 TSPAN7 FTH1 MARC2 IER2 FAM53B JUNB IER3 PSENEN RHOA LYPLA2 ACE JUN ANXA2 ANXA3 PHF11 DUSP1 ANXA5 TUBB EMP2 EMP3 IL18 LYVE1 TUBB2A NME1 RHOB NME2 GPRC5A TPPP3 PRPF19 FXYD5 KRT18 AGO4 ID3 HLA-DQB1 CLDN18 MYZAP CRELD2 CALR UBXN1 SLC44A2 RPN1 RBM8A FPR2 TMEM160 TWF2 PQBP1 OAZ1 LIMD2 CTSS MED18 MAP1LC3A TRMT112 SNX3 CLEC7A PRX SCAND1 SH3BGRL3 GPR116 TMED2 FCER1G CLIC3 CTSD HLA-DQA1 ATP6V0E1 DYNLL1 BCAP31 MDH2 PRMT2 TMEM176B FOS LAPTM5 CACYBP FAM189A2 ZDHHC18 COX6B1 FKBP1A CTU2 FABP5 SNX17 LAMTOR1 SMAGP PLIN2 RAMP2 TKT COX5A GRN HEXA CDKN1A NDUFA13 RPLP2 GSTP1 GDPD3 TUBA1A GNAI2 ADAMTSL2 CST3 TMEM147 TUBA1B MYEOV2 TSPO GSN CD74 RPS8 RPS9 ZBTB16 MPEG1 SHISA5 IGJ TYROBP RPSA PPP1CA CXCL10 TMEM256 TMEM259 LY6E FAU APLNR S100A6 ABCG1 RNF187 SNRPB GRINA PLVAP SEPW1 NDUFB10 PEBP1 CLU COX6A1 ECSCR SLC9A3R2 CDH5 ZFP36 PDPN LAMP1 EFNB1 HCFC1R1 MYH14 CFL1 ROMO1 RPS2 NDUFV3 CD97 SLC38A2 ATP6V0C ATP6V0B F2R IGFBP4 CYBA TBCB PGD DGKZ HOPX QDPR RGCC REEP5 SELK ARPC2 ESAM XAF1 FTL MFGE8 CSF1R COX17 UQCRB BRI3 RTKN2 ACTG1 ARL3 LTBP3 CORO1A AGER C1ORF54 TMEM100 CNN2 UBC BAG1 TMEM109 PIM3 IGFBP7 COX14 ACAA1 GPX1 EGFL7 EIF5A HSP90AA1 HSPA5 GPX4 HSPA8 CAV1 NDUFC1 HIGD2A TMBIM1 NFKBIA SMDT1 NDUFS7 RPL37A SYF2 ALB MYH9 IRF7 TMBIM6 PLEC VIMP NDUFB7 BRK1 HSPB1 AGPAT4 CYR61 ATP5D PLTP SYNGR2 ADAMTS15 PSAP TMEM204 CA4 DVL1 CCDC85B COX4I1 YWHAH HIST1H1C NDUFA7 NDUFA5 GLRX5 ADRM1 NDUFA3 H2AFY CYP4B1 ALOX5AP NDUFA2 NDUFA1 ATP2B1 KLF4 KLF2 DNAJA1 CLDN5 DAD1 IFIT1B TXNIP HIST1H2BI EIF3G STUB1 SMIM22 PFDN6 EIF3C ITGB2 CEBPB KRT80 CEBPD RTP4 HSP90AB1 FURIN DCTN2 EMC10 ATP5G3 TSPAN13 ARHGDIA MIEN1 EVA1B MAT2A BMS1 PGLS MAPK3 CDIPT CHCHD2
Down Genes Mouse Lung from GSE19137:GPL1261:6 MYLIP RPL22 RPL21 CNBP RPL23 RPS7 DEK FBXO16 KIAA1462 ATP1B1 HIPK3 PPP1CB EDAR EID1 PPIA NUPR1 SCGB1A1 GSTA3 CAPZA2 UQCRC2 RPL26 CES1 ENPEP PHLDB2 RPL11 PON1 CCNI RPL10 ADH1C HP MSANTD4 RPS4Y1 PCNP RPL15 RPS5 MYH10 CHIA TNNC2 SLC34A2 BNIP3L RABL2A DSTN NR1D2 COX7A2L RPS26 NACA SPECC1L DYNLRB2 TCF4 RPS24 RPL5 RPL3 RPL4 LRRC58 DPT WFDC2 ATP5C1 C14ORF166 MGST1 VPS26A RPL7 MYLK EEF1B2 RPS15 C5 RPS17 BPIFA1 LGALS1 RGS2 SCP2 PRDX1 LRAT RPS12 HADH RPS11 PLS3 TNS3 RPS14 PAICS ANXA1 SSR3 CBX3 SFTPD RPL13A INMT NAP1L1 LYZ VEGFA CYB5A MYH1 BMP4 COL3A1 OGN PTPRB SCGB3A1 RBMS1 ITGA8 SCGB3A2 PABPC1 ZNF780A DDR2 DDX3X SLC25A3 CSDE1 NREP DBP DRAM1 SH3BGRL CCKAR CA3 HSD11B1 SMIM15 MBNL1 NPM1 LIMCH1 MAMDC2 DYNLT3 FMO1 TP53INP1 FMO2 BGN FNDC3B RNASE4 SERPINB6 PTGR1 DCN IL17A KLF9 TJP1 FABP4 CAT NFIB ALDH1A1 GPAM RAB9A PDE5A PCOLCE2 EIF3E HLF FHL1 FSTL1 TMEM260 KCNA7 RPL10A PKD2 SEPT7 FAM102B RBM3 METTL7A BNIP3 CYP2F1 RPL7A
Coronavirus Perturbation Up Genes Calu-3 2B4 from GSE45042:GPL6480:1 GLYCAM1 SLC12A1 STARD9 TNRC6C-AS1 OTOP3 PNLDC1 POM121L4P RHEBL1 COL9A2 CYP1A2 PFN3 HIST1H4G ANKLE1 AMER2 ATF3 C1ORF194 LOC400756 TMEM75 ALOX12B AQP6 ASCL2 SLC5A5 MLLT4-AS1 IFNL1 FBXL22 IFNL3 SPOCK3 GNAT1 LY6G6E OR7D4 SAMD14 EGR1 EGR2 RAET1E-AS1 CHST8 TPT1P8 KIR2DS4 ARRDC4 TNFSF14 SLC6A12 NEXN-AS1 ANK1 LOC100996385 TEX19 LCA5L FLJ40194 CNKSR2 ARC LOC100130964 TNNT2 GJB7 C19ORF26 PADI4 MAGEB1 TAGLN3 ACSBG2 MESTIT1 CRYAB ACTRT3 VGLL2 FERMT3 PAEP TBC1D22A-AS1 LST1 FLG SPI1 ZNF132 NPFFR2 SLC22A6 RSPH10B SPG20OS CAPSL COL13A1 STMN4 TPTE2P1 SAMSN1 HSP90AB6P ART4 ISM1 SCGB1D2 ART1 IL36B ZC3H12A TMEM88 C10ORF128 BPIFA3 KLF3-AS1 ALX4 MYO18B APOH DIRC1 CCL26 EDN2 GABRA1 JUN CCL23 DUSP1 IL16 PAX7 ADAM32 RGMA TMCO2 DUSP8 NPAP1 ZEB1 MMP12 FLJ40536 COL3A1 CHIAP2 PDZRN3 ZNF479 TLR4 SIGLEC7 CCL27 ZNF597 ZCCHC13 NRN1 C17ORF77 RRAD LRRC39 FBF1 TAS2R46 AKAP17A HEPACAM2 GPT AXDND1 MLN SLC22A14 DEC1 CASP14 NCKIPSD MYCT1 GPR116 FAM43B CCR8 HAO1 CLIC2 CCR4 SLC18A3 C11ORF44 MAP4K1 MRGPRG-AS1 FOS LAPTM5 PRSS36 C6ORF165 CTAGE10P MIR133A1 LCE2B LOC101929680 KIF26B INGX AHRR LOC100506557 MGARP IL17F TRIML2 PLCB2 C16ORF86 SLC22A23 CDK5R2 C1QB PTGER1 IL27 TGFB1I1 PTGER3 QPRT SPANXA2-OT1 TCF23 CCM2L GLI1 SLC8A2 GLI3 SCML2 FAM223B PRAMEF2 IFNB1 DMD NEFH KCNF1 PLCL1 CD163 AOC3 SCARA5 DEFA3 OSM RAB30 LIN28A TBC1D21 LIX1 APLNR ADORA2A-AS1 ZSCAN1 CSPG4P5 CNTN1 FIGF EMX2OS OR2C1 CSF2 RGS14 CSF1 SLA PPP1R15A LOC646903 BEST1 LENEP ATOH8 FRZB OR2S2 UNC5B-AS1 MPZ SPP2 RGS22 NLRP1 ZNF667 KIRREL3-AS3 SYT6 KRTAP5-8 ARID5A TRPC3 TRAF1 NSG1 C2ORF16 GFAP LOC100129648 KMO MFHAS1 AZIN2 GEM NR4A3 FAM187B FLJ44715 KIFC3 SELM DGKQ BIRC8 PRO2012 CREB5 IFNA10 C17ORF99 MRO CYP46A1 CACNA1G LOC653581 FGF8 RGS4 BAG3 LOC100507316 MFSD6L TNFRSF9 MBP SLC38A4 MAGEB10 TGM4 SSX2 UNC45B ZNF880 POU2F2 TMCO5A C1ORF162 HSPA6 RFPL1 RFPL2 RFPL3 MRGPRX1 OR1F1 FAM74A1 MT3 SYNGR4 BMP7 SUN5 LOC645752 QRICH2 THRSP RBM24 SLC25A2 BCAR4 NLGN1 BNC2 CCDC26 HSPB8 CELF4 ACSM2A ACSM2B CXCL2 CXCL1 HK1 PLD2 TREM1 TREM2 CGB1 PLD4 PIK3R6 ADAMTS10 ADAMTS17 FBXO40 DNAJB1 KIAA1524 AOX1 UTY TRIM49 TRIM43 MAGEA12 DRD4 RBM11 PRLHR KDM6B CCDC179 FGB NTRK3 NLGN4X DCD LGI4 TAF11 ALOX5AP HTR3D PDX1 FAM209B CPT1C DLK1 TBX3 CLEC2B FAM167A NOVA1 MAB21L2 IL2RB TSPAN18 ASXL3 ESF1 PI16 PI15 DDIT3 LTA BPI MASP2 ACKR2 B4GALT7 UMODL1 SCOC-AS1 CX3CR1 SLC5A12 KIAA1551 SLC5A10 UROC1 SLC5A11 LDB3 THBS2 CKMT2 RNF113B PIP5K1P1 CECR6 TAGAP OR13D1 SOST NOS2 OIT3 SLC25A25
Coronavirus Perturbation Down Genes Calu-3 2B4 from GSE45042:GPL6480:1 TRHR CCDC155 EPHA8 AKR1E2 TREX2 PCDH8 HSD3B2 THNSL2 POU4F3 CXCL10 GPRIN3 FNDC5 CCDC81 OLFM4 FOLH1 RAB37 HOXC13-AS LRFN2 TNFSF4 GSTA2 DPEP1 MXRA5 PRDM9 USP27X-AS1 CHRM2 CHRM5 C21ORF49 LOC149703 GPR65 JAKMIP3 H1FOO RGAG1 SLIT1-AS1 LOC100126784 CCND2 FLRT1 HMCN1 ADORA1 OR2B6 GBP5 OR2A25 LOC100130950 S100A12 LOC101060157 C8ORF46 WSCD1 ODF3 SYT1 ABCA4 LOC643549 IL22RA2 ATP4A CYP2A7 GLIS3-AS1 VAMP1 PRR16 LHX6 TSPYL6 SPARC TCERG1 ARHGEF25 KCNE4 LOC283701 LYPD2 LYPD4 RORB LYPD6 MAGEL2 SLC2A9 RIMS3 ART3 GJA8 KCNN2 ERMAP PCDHA9 OR8D2 IL13RA2 GLYATL1 KCNJ16 GP6 OR1N2 RPGRIP1 CLDN16 P4HA3 FSHR VN1R1 PCDHGB1 SERPINI1 CAMK1 CLDN18 SCN4A VSTM2B SIGLEC9 C21ORF128 MYH7 LRRC38 GUCY2F LOC100130193 SERPINA10 CYP7A1 FUT2 OR4S1 LOC100506242 PENK MAP6 DNAJB8 CR1 P2RY12 OR8J1 KCNK13 SYP F2 KIR3DL3 CLDN6 LOC100130920 AQP7P1 APOC2 DBIL5P2 LINC00900 DNAH1 F2RL3 SRPX FKBP10 CSTA PTGER2 UCMA CRX DAPL1 GLI2 MYPN LOC541473 FAM154A SYNGAP1 LCE3C EGFLAM SULT1E1 CCL4 GC TMEM14B TRIM22 CTHRC1 HEATR9 TBC1D10C
Coronavirus Perturbation Up Genes Calu-3 2B4 from GSE45042:GPL6480:2 IQCF6 SSTR5-AS1 SLC12A1 OTOP3 LOC283352 POM121L4P RHEBL1 MYL1 IL23A RBP2 COL9A2 COL9A1 CYP1A1 CCDC89 VIP ASB2 ALOX12B SFRP1 CDKN2AIP SLC5A5 IFNL1 FBXL22 SAMD15 SPOCK1 SNCG E2F6 RIBC1 ZNF267 LOC100286922 NTNG2 NAPSA PLA2G4C ARRDC3 KIR2DS4 LOC253805 ANK1 LCA5L FLJ40194 LOC100130964 SNHG15 GPR182 TEX13B GJB7 C19ORF26 SPDYA CRYAB CETN4P FLG SPON2 SPI1 NPFFR2 DCUN1D3 STMN4 LINC01191 IKZF1 RXFP4 DYNLL1-AS1 ZC3H12A GJA4 BPIFA3 TESPA1 ALX4 APOH MIOX TMEM150C ZNF484 DUSP1 OR7E91P SLC35E4 IL19 PAX7 ADAM32 TET1 ZNF35 LOC101929412 TMCO2 IL1A ZEB1 MMP12 TG COL3A1 ZEB2 LINC00847 TLR9 REN TLR6 KBTBD8 TLR4 ZNF596 TENM2 CITED1 OR10H3 KGFLP2 GRIK2 C6ORF52 GRIK3 GPT C10ORF91 SLC22A14 GPR111 SOCS2 C6ORF58 MYCT1 CTLA4 HAO1 LINC01126 SERPINB4 RSPH4A MPP4 P2RY12 DEFB106B ANO3 GUCA2B ACTL8 HYPM MS4A6A LCE2B FAM183B AADAC B3GNT5 INGX FLJ25715 TRIML2 LINC00982 RGR C16ORF86 IFNA5 ROBO4 TMEM151A MYT1L TGFB1I1 QPRT CRYBA2 TMEM52 ASGR1 LYZL6 GUCA1A FSTL4 LCE3D TAF7L EGFLAM CYP2A13 PRAMEF2 MRC1 EFCAB3 MRC2 NEFH PGLYRP1 TBC1D10A FILIP1L CD163 S100A3 FLJ13744 HCG9 RUNDC3B RAB30 ARHGAP25 BTNL8 HIC1 HILS1 IFI44L CXCL13 FAP MSH4 ADAM6 APLNR COL20A1 ZNF436 CD69 ZSCAN1 TBC1D29 KIAA0408 ZNF554 ZNF432 FIGF CSF3 ZSCAN9 NATD1 SLA LOC650293 GPR61 AURKC BEST1 FAM129C ATOH8 LOC728673 FLJ33360 FRZB ZFP37 OR2S2 C1ORF105 LRRC70 POTEG NLRP1 S1PR3 RHBG PAK4 KRTAP3-1 KIRREL3-AS3 AICDA TRPC7 ARID5A INHBA NSG1 ESRRG C2ORF16 LOXHD1 UPK3A MFHAS1 GEM KIFC3 DGKQ COL21A1 NACAD DRC1 CDH18 CREB5 FBN2 ZNF772 CLSTN3 KLHL11 MARCH10 CES5A KCNV2 C1ORF204 BRINP2 NPPB LOC100507316 TNFRSF9 KLRC2 SSX2 UNC45B C1ORF162 HSPA6 RFPL1 RFPL2 SGIP1 RFPL3 FAM74A1 SYNGR4 BMP5 NFKBIA IL6 IL3RA VSTM2B SPEM1 BCAR4 CXCL8 CELF2 BNC2 CCL3L3 LINC01096 LRRK2 CELF4 KCNQ1DN TNFAIP3 ACSM2A CXCL2 HTR2B DUSP16 HK1 TREM2 CGB1 PLD4 ADRA1A ADAMTS17 FBXO40 GPER1 VCPKMT DIAPH2-AS1 CPXM2 ERV9-1 C21ORF91 TAC3 CYTIP LONRF3 IMPG2 PRLHR CLCA3P FGB DCC EYA1 FGG IRX4 SLC13A1 OR7E5P WASH7P ALOX5AP ZNF300P1 KCNK17 C9ORF24 SUGCT KLHL41 CLEC2B NOVA1 TSPAN18 PPAP2B PI16 PI15 DDIT3 LTA LINC00900 PTX3 B4GALT7 ZNF292 KIAA1551 SLC5A11 USH1G LDB3 HDAC9 OASL CIART FTCD CYTH4 FAM166B EDNRA CKMT2 ADAMTS3 GRM7 PTPRZ1 OR13D1 CCL2 SOST TCEB3C ZNF841 MBL2
Coronavirus Perturbation Down Genes Calu-3 2B4 from GSE45042:GPL6480:2 TGFB1 QPCTL RNF44 LOC221272 TMEM178B ESX1 LOC285812 TEX38 OR2T5 SKI RGS9BP SPINT1 PP13439 STK24-AS1 IGKV1D-8 LOC728705 BCORL1 TP53 AGRN MIR210HG IFITM5 USP27X-AS1 FTHL17 GIMAP2 GPR65 OTP HERC2P7 COX6A2 GLB1L2 AQP4 C6ORF132 CMIP CXCL17 C1ORF233 CTGF MUC1 HMGN5 HERC3 CCND2 ACTG1P4 CDH1 TP53INP2 LOC100507131 PABPC1L2B GPR157 ACSS1 PPFIA3 INSR FZD8 TMEM120B CYP4F3 TRPC3 HGF LOC155060 POU3F3 VASN C9ORF62 ADRA2A PROC C20ORF96 DLGAP1-AS4 PLEKHS1 NAT8 TCN2 RADIL FASN SNAI3-AS1 TLCD2 HOXB8 OR7C2 MATN3 C11ORF96 KRT19P2 LOC283701 MS4A8 IL10RB-AS1 SLC38A11 WFDC2 SEZ6L2 HTRA1 LYPD6 C17ORF96 HSP90AB6P LOC101927221 SOX3 ARHGAP23 DMBX1 LGALS2 ANPEP FAM150A TNFSF12 LINC00933 PROM2 SEC31B SLC14A1 CDT1 FUS GPX3 GSTM2 SETD1B MUC5AC H19 TMEM213 INCENP PAH PABPC3 LOC100132363 RHPN1-AS1 RAD51-AS1 NAT8L CCL28 GGNBP1 L3MBTL1 DLX4 RTN4R CITED4 MOGAT1 MRI1 STC1 SMG1P5 FOXK1 LIMD1 MIR4697HG SYCE2 CALB2 FBXL19-AS1 PDE4A TNFRSF14 KDM6B LGI2 LOC253842 DMTN UNC5B SLC2A11 PCOLCE ANO7 SORBS3 FBXL16 ANO8 CTAGE10P KCNQ1 GDPD1 SMOC1 EGFEM1P PLA2R1 EPPK1 MAPRE3 NEUROG3 NPDC1 ZNF575 MAGEH1 LINC00342 RERE ZNRF2P1 PTGER2 C15ORF38-AP3S2 TOR4A CLN8 TTR GNA14 SLC25A27 ZFP14 POFUT1 PPP1R13L TBC1D30 CXCR3 DMBT1 C8ORF60 METTL7A PCBD2 BPNT1 ZNF205 TP53I11 SLC25A23
SARS-CoV perturbation Up Genes Vero E6 from GSE30589:GPL570:1 PHLDA1 YOD1 CXCL10 ZNFX1 NEURL3 FAM161B BAMBI SLC25A33 AMOTL2 PPP1R15B ATF3 IER5L FOXO6 FOXO3 CTGF IFNL1 ZFP36 FLRT3 TAF1D MYC CHAC1 CCNL1 SH2B3 E2F8 EGR1 SNHG1 EGR2 EGR3 EGR4 ZNF263 GADD45B GADD45A KLF10 HMHA1 INHBA ISG15 MIR21 SMAD7 MFHAS1 MAFF ZNF816 LHX1 MAFG CDC42EP3 PFKFB3 LRRC10B KLHL15 IRS2 IFIT2 IFIT1 ZC3H12A RGS2 CCRN4L IER2 RPL38 JUNB IER5 IER3 ZNF367 IL11 DUSP5 DUSP6 EMX2 TIPARP JUN TSC22D2 DUSP1 DUSP2 BDNF NFKBIZ LIF VEGFA MSL2 NFKBIA BMP2 BHLHE40 CYP11B2 CLCF1 CSRNP1 CXCL8 TNFAIP3 AREG IRF2BPL CYR61 BBC3 GRK1 PPRC1 NRIP1 NFIL3 BRD1 FEM1B FOS ZBTB34 KLF5 NGF GPR144 KLF6 FOSB DDIT4 PAPD7 DDIT3 KIAA0907 SPRY2 ERRFI1 ZNF574 CEBPB CEBPD MIR155HG SOWAHC KANSL1 BTAF1 IFIH1 SERTAD2 ADAMTS1 SERTAD1 ZIC2 LOC100289333 CCL2 ZSWIM6
SARS-CoV perturbation Down Genes Vero E6 from GSE30589:GPL570:1 MECR ATP6V1E1 TEX30 AP1S1 GPKOW CIDEB TM4SF4 PPP2R1A ACSL5 WDR77 CDC20 PTRHD1 GPR160 BRE SARNP SUB1 ASF1A TMEM126A UQCRC1 KIF20A PFN1 ATP6V0D1 WBP2 CISD1 SLAIN1 UBE2L3 EXOSC8 MAGOH TFPT EXOSC5 CDC26 SNRPD2 PSMD1 NR2C2AP S100A13 ARFIP1 RABAC1 TIPIN S100A11 MIF USMG5 VAMP8 NDUFAF3 PSME2 TAGLN2 PPT1 HYOU1 PSME3 SDC2 NDUFAF2 CRYAB PRR13 VAMP3 CUTA ISCA2 CDCA3 VARS MAGED1 BEX1 ANP32A CDCA8 MRPL13 TXNDC17 ZNHIT1 APOO PRDX4 C12ORF57 ZNHIT3 APOM MRPL2 PRDX5 C14ORF1 LGALS1 C19ORF33 C7ORF55 LYPD1 NFU1 SMCO4 ASL ARL6IP5 TSPAN6 LTA4H SERPINH1 AMZ2 ATP6V1C1 PRKACA MIOX SRP9 PSENEN CENPW MCRS1 SSSCA1 FUCA2 TUBB MRPL27 MRPL24 LYZ NME1 PDZK1IP1 MMP10 DERA IMMP1L PIGF CMSS1 MRPS9 DEPDC7 TMEM33 C12ORF29 SWI5 CSDE1 MRPL37 ZBTB8OS CYB561D2 OAZ1 LIAS MRPL34 ACAT2 STIP1 MRPL42 EPCAM SH3BGRL BABAM1 MAGT1 ERI3 STK39 TK1 SH3BGRL3 PBK TMED2 TIMP1 L3HYPDH SLC22A11 AP1M2 DLGAP5 NQO1 SF3A2 PRORSD1P DYNLL1 ATP6V0E2 VKORC1 MTX2 PGAM1 GSTO1 RPA2 ACOT13 UBE2E2 ORMDL2 TTC1 MRPL46 C12ORF10 PGRMC1 WDR12 COL4A1 PSMA4 FABP5 EBNA1BP2 PSMA2 NDUFAB1 TMEM39B ACTBP9 UBBP2 LAMTOR2 LAMTOR5 SLC29A1 SPC25 MSRB2 AHCY CD63 DHRS11 NDUFA13 HEXB WRB MRPS33 TMEM260 CAPG HCCS PRKAG1 CRIP1 CRIP2 GYS1 NKAP PSMB8 PSMB5 PSMB6 PSMB3 PPP1R7 DNER NUF2 AIFM1 SRP54 CKB MPV17 TMEM14A LCMT1 TMEM14B HLA-DMA C11ORF48 RBPMS2 RAB2B GINS1 SUPT16H UBE2C S100A3 EPDR1 UBE2A CNOT10 ILF2 APOA1BP YIF1A RBX1 NRBP1 SLC25A39 COPS5 MORF4L1 DPM3 COPRS GNPDA2 OLFM4 TMEM258 HAT1 UBE2S UBLCP1 BUB1B TMX1 FKBP9 TGFBI ISCU SNRPG CHMP4A PPIB YPEL5 SNRPB MAD2L1 UBE2M NHP2 UBE2N DAP3 SEPW1 GEMIN2 CD81 C11ORF73 NDUFB10 TSPAN31 PARK7 CIB1 GTF2E1 HSP90B1 TMEM243 TCEAL8 TUBA3D ICT1 CCND1 EMC2 PTTG1 CFL2 EMC4 SPTSSA ROMO1 COTL1 BANF1 CDC123 KPNA2 IGFBP6 BNIP3L OST4 LSM2 M6PR NUP155 WASH3P EIF2S3 PDIA6 MOB1A PDIA5 NDC80 OXA1L DLG2 LSM7 ARMCX6 MAP7D1 CDH16 DYNLRB2 RNASEH2A NOP10 CHMP5 SELT CCDC124 CPLX1 ATP6V1D GOLT1B BRI3 DDX1 PHB FAM216A CHRDL1 DPY30 HTRA1 COX7A2 VPS72 AKR7A3 ZMAT2 KHDC1 G3BP2 FLOT2 TMEM109 PLGRKT PLS3 AP2M1 GPX1 GALNT7 RHBDD2 MSN CAV1 PA2G4 TPRKB DHCR24 BFAR PJA2 NDUFS3 DSG2 SERPINI1 NDUFS2 PSMD10 MCUR1 PSMD13 SEH1L SAR1A CKS1B HMGB3 HMGB1 DPP3 HSPB1 PLD3 PDLIM1 SEP15 PSAP TMEM205 TMEM208 DDX18 MARCKSL1 H2AFZ RRM1 GLRX5 CCDC58 NDUFA4 TSTD1 TAF12 NDUFA3 DCXR GGPS1 MND1 PRC1 HAUS1 BCS1L SUCLA2 DAD1 RBM42 PFDN2 SLC25A11 ACIN1 SMIM20 DYNLT1 ASNSD1 SEC11A ERCC6L ALAS1 HSP90AB1 GMPR2 PRPS1 ETFA SRM ATRAID PTPLB CRYZ ARHGDIA SGCE CHCHD4 C19ORF70 SEC61A1 POLD2 POLR2G IDH3B
SARS-CoV perturbation Up Genes Vero E6 from GSE30589:GPL570:2 IL11 DUSP5 DUSP6 TIPARP JUN GDF15 TSC22D2 DUSP1 DUSP2 NFKBIZ LIF MSL2 CXCL10 NFKBIA ZNFX1 BMP2 FAM161B BAMBI BHLHE40 CLCF1 SLC25A33 AMOTL2 SPIN2A ZNF513 BCOR PPP1R15B CSRNP1 CXCL8 ATF3 TNFAIP3 FOXO6 IRF2BPL C1ORF74 BBC3 NPTN-IT1 ZFP36 PPRC1 FLRT3 TAF1D NFIL3 RNF151 CCNL1 SH2B3 RAB11FIP5 ZNF267 EGR1 SNHG1 BRD1 ZNF263 GADD45A KLF10 LINC00152 FOS INHBA ZBTB34 ISG15 MIR21 KLF5 SMAD7 MFHAS1 PAN3 MAFF GPR144 KLF6 MAFG DDIT3 KIAA0907 SPRY2 PRR12 VMP1 PFKFB3 ERRFI1 ZNF574 CEBPB LRRC10B PPP1R18 KLHL15 KANSL1 IFIT1 SPRED3 ZC3H12A SERTAD2 ZIC2 IER2 CCL2 RPL38 JUNB IER5 ZSWIM6 IER3 ZNF367
SARS-CoV perturbation Down Genes Vero E6 from GSE30589:GPL570:2 MECR TEX30 C2ORF74 AP1S1 PIH1D1 PTRHD1 EID1 PSMC6 POLR3C SARNP ASF1A TMEM126A UQCRC1 PSMC1 RABL3 CKLF THYN1 GHITM TFPT KNSTRN PSMD1 RABAC1 S100A11 ATP6AP2 ACTL6A WDR54 VAMP8 PSME2 PPT1 PSME3 CRYAB PRR13 CDCA2 CDCA3 TTYH1 CDCA8 ENO1 MRPL13 PRDX4 ALKBH3 PRDX5 GRPEL1 LYPD1 SERPINH1 AMZ2 SRP9 CENPW LYPLA1 ANXA3 TPI1 MRPL27 TUBB2A LYZ MMP10 PIGF TMEM33 C12ORF29 MRPL37 RPS27L OAZ1 MRPL34 ACAT2 MRPL42 ATIC EPCAM UGT8 C19ORF10 SH3BGRL3 TIMP1 TIMP2 HAVCR1 AP1M2 DLGAP5 MBD4 SF3A2 DYNLL1 PGAM1 GSTO1 UBE4A MRPL46 WDR12 PSMA6 PSMA4 FABP5 EBNA1BP2 PSMA2 SDHAF2 NUCB2 TMEM39B LAMTOR2 SLC29A1 OAT PIGU NDUFA13 HEXB PRKAG1 FAM127A LMAN1 PSMB8 PSMB5 PSMB6 PSMB3 PPP1R7 NUF2 AIFM1 SRP54 MPV17 TMEM14A TMEM14B C11ORF48 CD164 S100A3 YIPF3 GSS VRK1 MSH2 APOA1BP YIF1A RBX1 NRBP1 COPS5 COPRS HAT1 UBLCP1 UQCRQ SNRPG MAD2L1 FAM8A1 C11ORF73 PARK7 GTF2E1 HSP90B1 TUBA3D ICT1 CFL2 PHLDA3 CDC123 KPNA2 TRAPPC3 IGFBP6 BNIP3L IGFBP3 M6PR MOB1A NDC80 LSM7 REEP5 ARMCX6 NOP10 PHB FAM216A SAT1 CORO1C PI3 PLS3 GPX1 HSP90AA1 PA2G4 TPRKB DHCR24 MCM5 TMBIM6 MIPEP SAR1A NDUFB5 NDUFB3 PSAP BCAS2 NOP58 MARCKSL1 NDUFA8 NDUFA4 GGPS1 PRC1 HAUS7 HAUS1 BCS1L DNAJA1 SUCLA2 TST DAD1 BOLA3 OCIAD2 SLC25A11 SMIM20 SLC25A15 SEC11A HDAC1 ALAS1 HSP90AB1 PRPS1 ETFA SRM PRIMPOL PTPLB SGCE SUMO3 POLR2E UBQLN2 POLR2G UPP1 IDH3B ATP6V1E1 GPKOW PPA1 PPP2R1A ACSL5 CDC20 SMARCA5 ZW10 NIF3L1 LAP3 SUB1 ANP32E KIF20A PFN1 TP53 ATP6V0D1 WBP2 TAGLN AQP1 UBE2L3 EXOSC8 MAGOH EXOSC5 CDC26 SNRPD2 TIPIN MIF USMG5 UCHL3 UCHL5 MYL12A TPX2 POR TAGLN2 PTPLAD1 SDC2 NDUFAF2 ATP6V1B2 ISCA2 MAGED1 BEX1 ANP32A GSKIP TXNDC17 ZNHIT1 APOO APOM MRPL2 C14ORF1 MRPL9 LGALS1 C7ORF55 NFU1 PDE2A ARL6IP5 TSPAN6 TSPAN4 ATP6V1C1 PSENEN SSSCA1 TUBB GNG12 NME1 PDZK1IP1 ANLN IMMP1L CMSS1 MRPS9 DEPDC7 ANXA2P2 UFC1 ANXA2P1 ANXA2P3 RAB5C CETN2 CSDE1 ZBTB8OS LIAS STIP1 CTSO SH3BGRL RAP1B BABAM1 MAGT1 CTSL TMED2 L3HYPDH NQO1 VKORC1 NPM3 MRPS23 RPA2 UBE2E2 ORMDL2 TTC1 PGRMC1 TOMM34 NDUFAB1 ACTBP9 SPC25 HRSP12 AHCY CD63 MRPS35 MRPS33 CAPG CRIP1 CRIP2 GYS1 NKAP DNER LCMT1 GINS1 UBE2C NOSIP UBE2A CNOT10 DPM3 GNPDA2 TMEM258 UBE2S POLE3 TGFBI ISCU CHMP4A UBE2N PCNA DAP3 ZCCHC9 SEPW1 GEMIN2 CD81 NDUFB10 AURKA PEBP1 CIB1 TMEM243 CCND1 EMC2 PTTG1 EMC4 SPTSSA ROMO1 COTL1 BANF1 TBC1D19 ATP6V0B BORA TMEM230 PDIA6 PDIA5 DLG2 CHMP5 SELT CCDC124 ATP6V1A ATP6V1D GOLT1B DDX1 CHRDL1 DPY30 HTRA1 COX7A2 NTS ZMAT2 TMEM109 PLGRKT GALNT7 PAICS MMP1 RHBDD2 MSN MANBAL COQ5 RBKS RCN2 NDUFS3 NDUFS2 PSMD10 MCUR1 SMIM6 CKS1B HMGB3 HMGB1 DPP3 HSPB1 EMG1 SEP15 TMEM205 YWHAQ TMEM208 DDX18 TAF13 H2AFZ RRM1 TAF12 DCXR DCK RBM42 VDAC3 DYNLT1 DCTN3 CRYZ ARHGDIA C19ORF70 POLD2 CHCHD2
SARS-CoV perturbation Up Genes Vero E6 from GSE30589:GPL570:3 CXCL10 EGR1 IFNL1 NFKBIA NEURL3 TNFAIP3 CCL2
SARS-CoV perturbation Down Genes Vero E6 from GSE30589:GPL570:3 MECR RPL24 WDR83OS HSPE1 EID1 NUP93 PSMC6 SPINT2 SARNP ETHE1 CYP20A1 ASF1A UQCRC1 RAN RALA SGMS1 GHITM SLAIN1 FNBP1L CLDN2 PCMT1 DPYSL2 PSMD8 GNG5 CAPNS1 PSMD1 S100A13 RABAC1 S100A11 NAA50 ST13 MTERF3 ACTL6A HDHD2 VAMP7 JTB TDP2 PSME2 PPT1 PSME1 MMS19 CRYAB VAMP3 EZH2 HOXB7 RPL30 POP5 MRPL17 MRPL15 C14ORF166 EPRS MRPL16 MRPL13 HSPH1 PRDX4 GJA1 PRKAR2B PRDX1 LTA4H ATG5 SRP9 PNPT1 CENPW ANXA5 SSR4 CDC7 PLXDC2 GNL2 LYZ MMP10 MRPL32 PIGF C12ORF29 PAM MGLL ZNF593 RPN2 OAZ1 MRPL34 MRPL42 EPCAM LDHA SH3BGRL3 SSR2 TIMP2 DLGAP5 DYNLL1 PGAM1 ELOVL7 NOC3L DHRS1 LDOC1 MRPL46 DYNLL2 COX6B1 WDR12 PSMA6 PSMA7 ABCB10 PSMA4 FABP5 EBNA1BP2 RNF128 SLC39A10 PSMA1 APEX1 PLP2 USO1 MPLKIP UBBP2 PRKRIR LINC00621 NDUFA12 PIGP TUBA1A SNX10 MCEE UBL5 PSMB6 PSMB3 PSMB4 NUF2 AIFM1 SRP54 AP3S1 SPIN1 TMEM14A C11ORF48 HMGB3P1 SEPT10 SEC24B SUPT16H RPS8 DONSON MSH2 APOA1BP RBX1 SLC25A39 COPS5 MORF4L1 SNRPA SLC9A6 HAT1 UBLCP1 SYPL1 UQCRQ C18ORF32 SNRPG PVRL3 SNRPB MAD2L1 FAM8A1 SRSF9 NHP2 ANKRD39 C11ORF73 UBE2D2 PARK7 BZW2 BZW1 PPP1CC RUVBL1 TCEAL8 LAPTM4A TUBB6 CFL1 USP1 RPS5 LEO1 RBBP7 RBBP8 HMGN3 KPNA3 CDC123 HMGN4 KPNA2 BNIP3L M6PR NDC80 ARMCX2 LSM7 ARMCX6 MOB4 ERH NIT2 FTL NOP10 CERS2 GMNN C15ORF61 FAM107B FAM216A IPO5 CORO1C UQCRH G3BP2 NELFE PAPOLA TMSB10 PLS3 AP2M1 GPX1 RFC4 GPX4 PA2G4 EDF1 AHSA1 TNFRSF21 TMBIM4 ETF1 SERPINI1 SERINC1 GTF3C6 AMD1 GLO1 C15ORF40 ATP5L NAE1 CEP170 BCAS2 NOP58 NDUFA9 NDUFA8 ADSL MND1 LYSMD2 NDUFA1 PRC1 HAUS1 PFKM C1D DBF4 SUCLA2 DAD1 BOLA3 OCIAD2 EIF3I SMIM20 MMADHC SLC25A5 EIF3E GAPDH SLC25A15 SEC11A ALAS1 HSP90AB1 PRPS1 TTK ATRAID CXXC5 HSD17B10 SUMO2 SUMO1 UBQLN2 CCDC53 UBQLN1 POLR2G POLR2J SEC11C PCBD1 EIF2A SSB OXSM PPA1 PPP2R1A CDC20 SMARCA5 DHX40 LAP3 LACTB2 CDC16 ANP32E KIF20A PFN2 PFN1 ATP6V0D1 WBP5 CISD1 AQP1 MAGOH UXT PDCD10 RPL36AL CDC26 SNRPD2 SUSD5 PTGFRN ARFIP1 TIPIN TMEM50A TALDO1 CMC1 MIF USMG5 SNHG6 COMMD8 TUBG1 UCHL3 STAG2 PTPLAD1 SDC2 TRMT11 NOL11 ITM2B RPS25 ISCA2 BEX2 MAGED1 BEX1 ANP32A PITPNB TXN GSKIP MRPL1 HTATSF1 TMPO GNG11 SYNCRIP ZNHIT3 RPS17 PTDSS1 MRPL2 LGALS1 NFU1 ARL6IP5 TSPAN6 SKP1 RPS13 PSENEN SSSCA1 SLC10A3 UBE2G1 NME1 DERA PTMA IMMP1L DEPDC7 KRT18 ANXA2P2 ACTR10 TOP2B TMEM185B TRAM1 SLC44A3 CSDE1 ZBTB8OS PPP3CA SNX4 SH3BGRL RAP1B BABAM1 MAGT1 CTSL STK39 SEC61G C1QBP TMED2 SNX7 CCT3 CAP1 NPM1 MAP4K3 CBR1 PRORSD1P BCAP31 MTX2 ORMDL2 PGRMC1 FKBP1B SPCS1 NDUFAB1 AIDA SPC25 AHCY CD63 MRPS36 AKR1B1 MRPS35 PRIM1 ZDHHC6 MRPS30 CAPG CRIP1 GNAI1 CRIP2 METTL9 CCT7 TUFM MMGT1 GINS1 UBE2C EPDR1 CNOT10 TMEM251 PUS7 GNPDA2 TMEM258 UBE2S DKC1 POLE2 TMX1 ISCU SCG5 UBE2K PPIB STEAP1 DAP3 CD81 CIB1 TMEM243 CCND1 HSD17B2 EMC2 HSF2 PTTG1 ROMO1 BANF1 NDUFV2 RPP40 OST4 CHCHD10 PDIA5 CCNA2 PRPF3 OSTC EBPL UBA3 MICU2 FGF13 CHMP5 SRP19 GOLT1B DDX1 CHRDL1 DPY30 COX7A2 ZMAT2 PLGRKT GALNT7 NAA35 CAV1 CBX1 LAMB1 MANBAL PJA2 NDUFS2 FAM96A VIMP FAM60A MCUR1 NAA20 SMIM6 YWHAB DIABLO PSMD14 CKS1B HMGB1 DBI RPAP3 HSPB1 HEBP2 EMG1 TMEM203 SEP15 HEBP1 UBE2Q2 MFSD5 YWHAQ H2AFZ RRM1 DYNLT3 NAA10 TAF12 GLRX2 DCK SOD1 KCTD9 VDAC3 VDAC1 DYNLT1 PFDN5 NUP37 ITGB3BP DCTN6 ASNSD1 NUP107 YBX1 CRYZ MAT2A RPS6KA3 KDELC1 BNIP3 BUB3
SARS-CoV perturbation Up Genes Vero E6 from GSE30589:GPL570:4 EGR1 DUSP1 TCF15 TNFAIP3 FOS NFKBIZ SSC4D DHRS2 CXCL10 HSPH1 IFNL1 NR4A2 NFKBIA DNAJB1 ZC3H12A NEURL3 RGS2 CYP11B2 HSPA1A CCL2 PIM3 HMX1 IL17C
SARS-CoV perturbation Down Genes Vero E6 from GSE30589:GPL570:4 RPL24 WDR83OS C9ORF41 EID1 PSMC6 GPR160 SPINT2 SARNP ETHE1 ASF1A UQCRC1 RPL29 CKLF SF3B5 STAU1 SGMS1 GHITM SLAIN1 FNBP1L CLDN2 PCMT1 DPYSL2 PSMD8 GNG5 CAPNS1 S100A13 RABAC1 S100A11 MTERF3 ACTL6A HDHD2 FIBP VAMP7 VAMP8 JTB TDP2 PSME2 PPT1 PSME1 VAMP3 EZH2 RPL6 RPL30 RPL32 POP5 NCAPG2 RPL34 MRPL17 MRPL15 C14ORF166 MRPL16 MRPL13 MRPL11 PRDX4 FAM122B GJA1 PRDX5 PRKAR2B SCP2 AMZ2 SRP9 PNPT1 CENPW LYPLA1 FGFBP3 RMI1 SSR4 MRPL27 PLXDC2 GNL2 LYZ MMP10 MRPL32 MZT2A C12ORF29 CDKN3 GPI ZNF593 MRPL42 LDHB EPCAM UGT8 EXTL2 LDHA TIMP1 TIMP2 DLGAP5 DYNLL1 PGAM1 ELOVL7 NOC3L LDOC1 MRPL46 COX6B1 PSMA7 ABCB10 PSMA4 FABP5 EBNA1BP2 PSMA2 RNF128 SLC39A10 AGPS PSMA1 APEX1 PLP2 MPLKIP CKS2 LAMTOR5 LINC00621 NDUFA12 PIGP TUBA1A SNX10 FAM127A MCEE PSMB8 UBL5 PSMB6 PSMB3 NUF2 AIFM1 SRP54 AP3S1 TMEM14A C11ORF48 HMGB3P1 SEPT10 SEC24B SUPT16H RPS8 C1ORF122 DONSON MSH2 APOA1BP YIF1A SLC25A39 COPS5 MORF4L1 SNRPA SLC9A6 HAT1 UBLCP1 SYPL1 UQCRQ C18ORF32 SNRPG SNRPE PVRL3 SNRPB MAD2L1 FAM8A1 NHP2 MAD2L2 RAB1B ANKRD39 C11ORF73 UBE2D2 PARK7 GTF2E1 LCLAT1 RUVBL1 TCEAL8 LAPTM4A TUBB6 CFL1 USP1 RPS5 LEO1 RBBP7 HMGN3 HMGN4 KPNA2 BNIP3L NDC80 ARMCX2 LSM7 ARMCX6 MOB4 ERH RNASEH2A NIT2 FTL NOP10 GMNN C15ORF61 PHB FAM107B FAM216A CORO1C UQCRH G3BP2 NELFE TMSB10 PLS3 AP2M1 GPX1 RFC4 GPX4 EDF1 TNFRSF21 NPC2 TMBIM4 CDK4 SERPINI1 GTF3C6 GLO1 C15ORF40 ATP5L NAE1 RDH14 CEP170 BCAS2 NDUFA8 ADSL CCDC58 SPAG5 LYSMD2 NDUFA1 HAUS1 RNF20 PFKM C1D SUCLA2 UNC50 DAD1 BOLA3 OCIAD2 EIF3I SMIM20 MMADHC SLC25A5 GAPDH SLC25A15 SEC11A SEC23A PRPS1 ETFB TTK ATRAID CXXC5 HSD17B10 SUMO2 SUMO1 SUMO4 UBQLN2 CCDC53 POLR2G POLR2J SEC11C EIF2D IDH3B SSB EPHA7 OXSM TM4SF4 PPA1 PPP2R1A CDC20 SMARCA5 NIF3L1 LAP3 LACTB2 CDC16 ANP32E KIF20A PFN2 PFN1 WBP5 PDHB CISD1 AQP1 EXOSC8 MAGOH UXT PDCD10 RPL36AL CDC26 SNRPD2 SUSD5 PTGFRN TIPIN TMEM50A TALDO1 CMC1 MIF USMG5 SNHG6 COMMD8 TUBG1 UCHL3 RPS29 PTPLAD1 SDC2 ITM2B RPS25 ISCA2 BEX2 MAGED1 BEX1 ANP32A TXN GSKIP MRPL1 HTATSF1 APOO GNG11 CHTF8 SYNCRIP RPS18 RPS17 PTDSS1 MRPL2 LGALS1 NFU1 ARL6IP5 TSPAN6 DECR1 RPS13 PSENEN SSSCA1 TUBB NME1 DERA PTMA IMMP1L DEPDC7 KRT18 ANXA2P2 TAX1BP3 ACTR10 TOMM5 TOP2B CETN3 ZBTB8OS NEDD8 LIAS IER3IP1 SNX4 SH3BGRL RAP1B BABAM1 YAE1D1 STK39 SEC61G C1QBP TMED2 BBS5 SNX7 NPM1 CBR1 PRORSD1P BCAP31 ORMDL2 PGRMC1 FKBP1B SPCS1 NDUFAB1 F2RL1 AIDA SPC25 AHCY CD63 MRPS36 AMIGO2 AKR1B1 MRPS35 PRIM1 ZDHHC6 MRPS30 CAPG CRIP1 GNAI1 CRIP2 RAC1 METTL9 MMGT1 GINS1 EPDR1 CNOT10 TMEM251 PUS7 GNPDA2 TMEM258 DKC1 POLE2 TMX1 ISCU SCG5 UBE2K LRP11 PPIB STEAP1 PCNA DAP3 CD81 CIB1 FBL TMEM243 CCND1 EMC2 PTTG1 EMC4 ROMO1 BANF1 MYH10 NDUFV2 EMC9 OST4 CHCHD10 PDIA5 CCNA2 PRPF3 OSTC GEMIN5 EBPL UBA3 GEMIN6 MICU2 FGF13 CHMP5 SRP19 GOLT1B DDX1 CHRDL1 DPY30 COX7A2 ZMAT2 NARS GALNT7 CBX1 LAMB1 PJA2 VCAN NDUFS2 FAM96A CUEDC2 VIMP MCUR1 NAA20 STOML2 YWHAB PSMD14 CKS1B HMGB1 DBI RPAP3 DPP3 HEBP2 EMG1 SEP15 HEBP1 UBE2Q2 MFSD5 YWHAQ TAF13 H2AFZ RRM1 DYNLT3 NAA10 TAF12 GLRX2 DCK KCTD9 VDAC3 DYNLT1 PFDN5 NUP37 ITGB3BP TSEN34 ASNSD1 NUP107 YBX1 CRYZ C19ORF70 BNIP3 BUB3
SARS-CoV perturbation Up Genes Vero E6 from GSE30589:GPL570:5 TRHR PDHX HSPE1 JMJD6 CDC20 NUP98 LGALS14 SOAT1 HSPA1A SUCLG2 GLA KIF20A PLCD4 RAN RRN3 SGMS2 WBP2 ITIH2 CDKN2AIP ADCY8 TOB2 TOB1 PNP NFS1 EXOSC5 GPBP1 MXI1 C19ORF52 ARFIP1 LOC101926915 NCSTN E2F7 SH3BGR FOXF2 ARRDC3 ARRDC4 NR2F2 MANF HLA-A SNHG8 NR1D2 UCHL3 TOPORS BTD TPX2 STAG2 INTS6 PPT1 CRYAB CHST6 GRB7 HSPA4L ZBTB8A ARL6IP1 ZNF491 CTR9 TXNDC12 MRPL18 GSKIP RXFP1 DEDD2 HSPH1 LIPF ZC3H12A TSPAN7 PRDX1 CCRN4L HMOX1 HIST1H3G CSTF1 PIP5K1B FLJ45513 GLUL SERPINH1 IER5 SDF2L1 NUDC CENPW CCDC117 DUSP1 PTGES3 NCOA4 TCP1 TACR2 IL18 SIRT1 CDC6 MRPS6 VAV3 TMEFF1 ANLN DEPDC7 AFTPH KITLG C12ORF29 CCDC7 CALR ADA MGLL CDKN3 CSRNP1 USPL1 TINAGL1 SLC44A2 LOC285627 ZFAND2A TOP2A CSDE1 ADIPOR1 SLC7A11 AREG PCSK5 SKA2 STIP1 FXR2 EPCAM ERMP1 UGT8 PDZD11 RHPN2 GPR116 CAMP DLGAP5 BRD2 SF3A3 MLH1 BCAP31 ARG2 PGAM1 FOS ACOT13 UBE2E2 CREG1 SYVN1 TTC7B ANO6 WDR11 TOMM34 DDB2 SPSB3 FABP5 NUDT9 SLC39A10 PPARG ZNF217 UBBP2 SPC25 CD63 GFM2 PIGU AKR1B1 GBE1 GDPD3 MRPS30 CST7 GYS1 HERPUD1 LMAN1 CPN1 SPTLC2 NKRF TMEM47 RSPO3 SOSTDC1 TMEM38A DLAT NUSAP1 DEPTOR CCT7 HLA-DMA CD55 MYLIP MORC4 UBE2C CCDC109B SPINK6 CYBRD1 GRHL3 WBP11 CDC25B TUBA4A HIPK3 TMEM257 UBE2S FAP POLE3 SLCO2A1 UQCRQ ZNF317 FKBP4 XPR1 FRK ANKRD39 NDUFB11 ODC1 PPP1R15A ZFAND1 GPR64 FAM117A CLU CIB1 ATP2C1 HSP90B1 TMEM245 LAMP2 CWC22 RUVBL2 PTTG1 SPTSSA FOPNL SLC25A46 CADPS2 EIF2B5 ACBD5 ATP6V0B GOT2 NEK7 ARHGEF18 BNIP3L KIAA0430 TVP23B CKAP5 PRPF8 KIF18B RGCC MXD1 REEP5 MKRN1 ARMCX6 TAF4B MAP3K11 DRC1 RSRP1 MNAT1 CHMP5 ATP6V1A ERO1LB COX17 FAM13A C15ORF61 SLC2A3 RLF ARL1 SAT1 ZMAT3 UBC BAG3 RGS2 UBB G3BP2 SNIP1 NEK2 PIM1 GYG1 SLC38A6 SYBU HSP90AA1 MMP1 HSPA5 RHBDD2 HSPA8 MUM1L1 TNFRSF19 HSPA2 NFKBIZ YDJC LAMB1 AHSA1 TGFBR3 PJA2 CUL4B BMP4 RCN2 BMP2 ADORA2B MFAP1 SERINC1 SERINC5 KHDRBS3 AGPAT9 AASDH CKS1B LMNB1 HSPB1 AGPAT5 DNAJB2 DUSP10 DNAJB1 UPK1B ORC1 DNAJB4 PDE4B RPS6KC1 DNAJB9 ECT2 ERVMER34-1 TMEM30A ASCC1 PLEKHG6 IRX5 PAPD5 PTBP3 RANGAP1 KCTD9 DNAJA1 GLB1 SYT13 PPAP2A SUCLA2 ALDH1A1 VGF CTDSP2 DNAJA4 TXNIP PTX3 ZP1 ALDH9A1 FOLR1 HIST1H2BE TMEM55A RBM28 ABCD3 NXT2 GPR89A USP10 ALAS1 HSP90AB1 PRPS1 UHRF1 RB1CC1 TTK HSPD1 HSD17B11 MALT1 GNA13 ZIC2 PLEKHH2 C3ORF38
SARS-CoV perturbation Down Genes Vero E6 from GSE30589:GPL570:5 MGEA5 TMEM194A LINC01220 AOC2 ACYP2 TMEM170B NEAT1 HIST1H4C C6ORF25 TP53I3 LOC101929064 LINC00529 TGFBI BLID SRSF7 CLDND2 CLEC2L TAGLN PPP1R2P9 SRSF2 HJURP CTGF PARD6A COMP C1ORF226 FLRT3 MSANTD2 CHAC1 HMCN1 ATOH1 SRPK3 EGR1 LINC01121 NOP14 KCND1 SYT4 MIR663AHG TTC32 GPR75 INHBA SSC5D MIR21 INHBE KRT32 LOC100289361 ADRA2C C9ORF62 EXT1 EFNA1 PAN2 DUSP21 FGF16 LOC100286895 METTL25 SNORD104 MALAT1 HAMP XKR4 GNAZ APOBEC3C TRIM72 COL17A1 DQX1 GPR87 SCARNA2 RAPGEFL1 ICAM5 NLK FBLL1 WFDC3 KRCC1 C12ORF57 CNN1 PMEPA1 NPPB EPC2 TNFSF10 MSC ARGLU1 CLHC1 GABRA1 TAPT1-AS1 YTHDF3-AS1 HTR1D IZUMO2 C15ORF52 ZNF32 LIF LOC728061 SAMD4A CNFN SORCS3 PDZK1IP1 TMEM179 SLC25A25-AS1 ID1 COL7A1 SPACA3 OGT ZNF512 SGK1 CXCL8 HIST2H2AA3 NUFIP2 HHCM KRT20 SLC7A3 LRRC3 GCNT1P1 ACAT2 EXTL1 PITRM1 VPS51 BAI2 ANKRD1 HIST1H1A LOC100133985 YTHDF1 MARCKSL1 TAF13 ANKRD45 PICK1 LMNTD2 KIAA1683 THOC1 GP1BB LOC101929153 NGF MN1 KLF7 RGP1 HNRNPH1 P2RX3 ETNK2 POLR1C IGDCC4 RPL23AP53 ANAPC7 LOC102606465 TNP1 LRRC17 PTGER4 LENG8 ZDHHC23 HOXD12 ACRC PPM1H LTC4S BTAF1 LFNG LOC100506022 ZNRF3 C10ORF71 ADAMTS1 ENC1 TLDC2 SLC25A22 CCL2 FILIP1L HNRNPA0 LINC00973 ZNF322
SARS-CoV perturbation Up Genes Vero E6 from GSE30589:GPL570:6 LOC728819 OXSM PLEKHA1 SOX12 TM4SF5 C19ORF40 RRAGB SCD RRAGC ORAI1 GTF2IRD1 NCBP2-AS2 FRMPD1 ZNF274 MAML1 LOC100128843 ARNTL TOB1 FRAT1 EPB41L4A-AS1 SCAF8 FLRT3 CREB3L4 C19ORF54 CPNE1 ARFIP2 HOXA5 MYH7B EGR1 TSPYL4 JUND SURF2 EGR3 ZNF263 TNFSF15 ARRDC2 VASP FOSL2 SQLE CNKSR1 MC1R TLCD1 CYP2S1 SNORD104 CCDC64B LOC100129361 TTLL13 WFDC10A LINC00543 PRR15 SET SPON2 LHB CTBP2 CREBRF MTFR1L SPATC1L EVPLL DEDD2 GSPT2 LARP1 LIPG ZC3H12A BLOC1S4 GJA8 HMOX1 HIVEP2 HOXC6 ERMAP IER3 DUSP5 BLCAP GABRA1 DUSP1 RIPK3 CCL20 IL19 TACR3 PLXDC2 VEGFB ITPKC RHOQ ID1 KRT18 BHLHE40 ID2 AKR1B10 MGLL HRCT1 CD3D ACAT2 TIFAB EXTL2 SOCS2 MAP2 SCAND1 NFIL3 SNX9 MBD5 ZCCHC24 YTHDF2 FAM46B FOS WDR13 DYNLL2 FKBP1B TPST2 CLIP2 STAC3 MAP1B F2RL1 ZNF217 HDGF ZNF212 TGFB1I1 LRRC17 C17ORF50 SCARNA17 HYAL1 TP53TG5 EP300 ENPP7 SETD2 ZSWIM6 SEC24C PRRX2 KLHL24 CORO2B TMEM251 PNRC1 PCDHA10 SNRPA TBL1XR1 ZNFX1 GNPDA1 DOK4 BAMBI FAP TMEM139 GOLT1A TBC1D28 ANKRD39 NDRG4 FAM117A FAM129A HSD17B7 FOXO4 FOXO1 C1ORF74 ATXN1L PURB ZFP36 RNF19A TRAPPC12 SH2B3 GAS2L1 IK BNIP3L TTC21B B3GALT4 C6ORF120 MRGBP MFHAS1 PAN3 PROC EFNA1 DLG4 DDAH2 LHX1 LCN2 EID2B NARF NAB1 IRS2 INSIG1 GPR87 C15ORF65 KRBA2 TTF1 SALL1 HACL1 ATP6V1F MARK4 LINC01348 TIPARP HMGCS1 NFKBIZ NFKBIA VCAN C7ORF60 NOA1 PIR PLCH2 MNS1 MCU CXCL8 GTF3C6 USHBP1 SMIM1 TNFAIP3 UFSP1 CXCL6 IRF2BPL MFSD5 IP6K3 TRIM41 DDX17 RNF25 HIST1H2AJ TPBG KLF3 CORT GZMM ZNF618 HKDC1 TXNIP TAF7 PTX3 HIST1H2BE SMARCD2 KDM3B SRXN1 MEA1 SRI HMGCR MSMO1 PIK3C2B RPS6KA1 CCDC53 HCG11 PGM1
SARS-CoV perturbation Down Genes Vero E6 from GSE30589:GPL570:6 NIPSNAP3A TEX30 LRRN4 IL1R1 CRADD GLCE TM4SF4 DEK C9ORF41 BTBD11 PSMB9 NECAP1 ZW10 ST5 NEIL3 MT1H FAM64A ASF1B TAGLN SERPINE1 CCNF NCAPH STATH SLAIN1 GABPB1 UBE2L6 UHMK1 NEURL1B TRBC1 NUP85 SUSD5 NTSR1 GBP2 HABP2 USMG5 TMA7 NR1D2 EXT1 LINC01514 HYOU1 PRR16 CRYAB CDCA2 GLDC CDCA3 ZBED8 CDCA7 CDCA8 PHYHIPL TXNDC16 WFDC3 RRP9 CHTF18 MT2A PRDX5 NETO2 EPB41L3 PDGFD TSPAN8 LOC100507395 TMEM200A CEP76 CEP192 SDF2L1 GPR15 ANXA3 VEGFC CDC7 CDC6 ZWINT MAGOHB CENPE ANLN DEPDC7 PTPRD C12ORF29 CENPL DEPDC1 MITD1 CRELD2 PCYOX1L KBTBD8 MPND TENM2 ZCCHC12 SDC4 TOP2A KIF14 KLK5 PRDM12 TIMM10 KRT20 PPP3CB TMEM169 EPCAM CSRP1 DPH2 CTSL MED10 SH3BGRL2 TK1 PBK L3HYPDH EHMT1-IT1 KRTAP1-5 ATAD2 SF3A2 AADAT ELMOD1 ACOT13 SLC35G2 DSPP ZDHHC15 SERPINB7 RACGAP1P NEDD1 LRRN4CL CINP TMEM39B LPPR5 ZNF337 CD47 CD46 SPC25 LGR5 LINC00621 PLCB1 DHRS13 TIMM9 NDUFA13 UNG CRIP1 CRIP2 ROBO1 CENPC PSMB8 ACADM DNER TMEM47 LOC102723701 COL11A1 NUSAP1 LINC00973 ANKRD13A LOC100131347 BCHE MMGT1 GINS1 YIPF3 LOC285812 YIPF6 PCDH9 VRK1 YIF1A MELK OLFM4 HAT1 UBE2S SHISA2 POLE2 BUB1B TGFBI PCNXL3 SRSF6 LRP11 PPIC MAD2L1 STEAP1 PCNA SRSF1 SRSF2 GALNT18 PLOD2 CDH6 NTF3 CSE1L USP1 NXPH1 DENND5A TBC1D19 LOC101060553 KPNA2 LINC00116 FANCI ATP6V0B GLMN USP43 BORA FST NUP155 EIF2S3 SMAD9 FANCG NDC80 KIF18A CCNA2 REEP1 KIF18B DIAPH3 METTL25 REEP6 GNB4 TROAP KIF2C LRRC3B MYOM2 CEMIP GMNN GXYLT2 FAM216A CHRDL1 COX7A2 CORO1C GLIPR1 KIAA0895 TMEM109 TGM4 ZNF385B FUS BDNF HTR1B ANXA2R MMP9 MCC KISS1 MCM5 CDK1 MCM6 MTFR2 RBM24 C3ORF52 UAP1 ZMPSTE24 MOSPD1 C15ORF48 LBH KDSR ATP5E ME2 OTX2 FAM83D RRM2 RWDD4 PPP1R14D CKAP2L RRM1 DCD PLAUR NGF RPIA SYT13 DAD1 OCIAD2 DTL COLEC12 HDAC2 PRPS1 RND3 TSPAN13 RND1 ZNRF3 SGOL2 ZNRF4 CHSY3 FBXO5 CCL2 ITGAV UPP1 SPDL1
SARS-CoV perturbation Up Genes Vero E6 from GSE30589:GPL570:7 DNAAF3 MEIG1 DNM1P41 SOX15 LOC101928401 HIST1H4A NEURL3 RRAGC GPR162 HSPA1A TRIM16 GTF2IRD1 SIK1 SKAP1 SGMS2 MAML1 FLRT3 LINC00514 HOXA5 ZNF267 EGR1 SNHG1 JUND EGR3 GABARAPL1 ZNF263 ARRDC2 KLF10 VASN VASP FOSL2 SQLE ZFPM1 MC1R PLSCR3 SNAI2 PRR12 RAB40AL LINC00543 SET LHB CREBRF ZBTB2 DEDD2 GSPT2 HSPH1 LARP1 FAM134C ZC3H12A BLOC1S4 GJA8 SERPINH1 RPL38 JUNB IER3 DUSP5 DUSP6 BLCAP DUSP1 RIPK3 CCL20 NCOA4 LIF ZNF35 ITPKC BHLHE40 CYP11B2 ID2 REL HMX1 CSRNP1 FOXC2 BTG2 SLC44A2 ZFAND2A ADM RASAL3 BBC3 ANKRD9 NEU1 RASSF10 EMD RNF151 IL34 ZCCHC24 YTHDF2 FAM46B FOS DKKL1 LAGE3P1 GPR144 B3GNT8 C6ORF47 FAM189A1 SNX15 STAC3 F2RL1 NOTUM ZNF217 UBBP2 PRKRIR IL17C ZNF212 ERRFI1 ZNF211 CTF1 CTDP1 TGFB1I1 LRRC17 PRKAG3 C17ORF50 PRAM1 SERTAD1 RSPO3 LOC388210 ZSWIM6 FILIP1L MYLIP MAP3K1 PRRX2 F10 SRD5A2 KRTAP4-6 MUL1 BTBD6 MUC3B LOC157860 CXCL10 FAP LTB4R2 ZNF671 ITPRIP ODF3B SFSWAP LINC00482 FAM129B FAM117A ZBTB22 ASAP2 FOXO4 GPR61 RBAKDN FOXO1 CTGF ATXN1L ZFP36 SH2B3 MAP2K3 SMAD7 MFHAS1 DEXI PAN3 EFNA1 EFNA3 MXD1 TMEM115 DLG4 MLXIPL MAP3K14 MICU1 CLSTN3 NAB1 SSC4D BAG3 RUNX1-IT1 NPPA ABL2 SNIP1 ZNF646 PIM3 HACL1 MARK4 PCSK1N PRRT2 TIPARP HMGCS1 NFKBIZ SHROOM4 FLJ32742 LINGO1 NFKBIA RASA1 NOA1 LOC149401 IFT46 MCU CXCL8 TNFAIP3 IRF2BPL DNAJB1 ADAMTS14 LASP1 SNAPC2 KIAA1522 DNAJB5 PDE4B GRASP IP6K3 DDX17 ZBTB34 RNF20 DNAJA1 TXNIP SPRY2 TAF7 PTX3 MVD FOLR1 SMARCD1 KDM3B CEBPD SOWAHC HSD17B14 HMGCR MSMO1 MALT1 SPRED3
SARS-CoV perturbation Down Genes Vero E6 from GSE30589:GPL570:7 TEX30 LRRN4 AP1S1 CRADD C20ORF27 SYTL1 GDAP1 C9ORF41 PSMB9 RBP5 NEIL3 IFT88 BRE TMEM126A UQCRC1 FAM64A PFN1 CDO1 STXBP1 TAGLN SLAIN1 GABPB1 MAGOH TFPT SNRPD2 GMDS NUP85 SUSD5 TCEB1 SAMD13 MIF USMG5 TMA7 SNHG5 UCHL3 SUPV3L1 EXT1 SLC6A9 TNNT1 LOC101929084 LINC01514 HYOU1 PRR16 VAMP5 MRAP2 OGDH SPARC ISCA2 CDCA2 CDCA3 ZBED8 BEX1 CDCA8 WFDC3 CHTF18 PPP3R1 NUDCD3 HIST1H3B PRDX5 DHX15 ARL6IP5 PPY TMEM200A STAT5A GSTM5 SRP9 EDN2 ANXA3 RMI1 TUBB CDC7 NUTF2 MRPL27 ZWINT MAGOHB IMMP1L PIGF DEPDC7 C12ORF29 CENPL CENPN MITD1 KBTBD8 MPND TENM2 PCSK1 TOP2A TMEM160 TIMM10 KRT20 C8G MRPL42 EPCAM UGT8 CTSL MED10 SH3BGRL2 TK1 PBK STAP2 L3HYPDH PRORSD1P ATP6V0E2 GSTO1 ELOVL4 ACOT13 RPA3 SLC35G2 MRPL46 MRPL47 DSPP ZDHHC15 LOC158402 FABP5 NUDT9 NDUFAB1 CINP TMEM39B TACC3 CD46 APBA3 SPC25 LINC00621 PLCB1 LRRC15 NDUFA13 MRPS35 GDPD3 HCCS JPH1 UNG CRIP1 GRAMD4 PIGW CRIP2 CENPC PTS PSMB8 ACADM PSMB3 NUF2 TMEM47 CKB COL11A1 NUSAP1 ANKRD13A LOC100131347 RAB2B BCHE MMGT1 GINS1 UBE2C YIPF3 PCDH9 YIF1A RBX1 CDC25C MELK OLFM4 TMEM258 HAT1 UBE2S PSAT1 UBE2T POLE2 BUB1B CAPZA2 TGFBI SNRPG PCNXL3 CHMP4A SRSF6 LRP11 UBE2M SRSF9 STEAP1 SPESP1 GEMIN2 SRSF1 SRSF2 PLOD2 FUOM POTEKP CLEC3B BCL2L12 TUBA3D ICT1 TCTEX1D2 CFL2 ROMO1 LEO1 LOC101060553 NSF ACBD6 GLMN LSM2 NUP155 EIF2S3 FANCG NDC80 ISG20 KIF18A CCNA2 KIF18B METTL25 REEP6 ARMCX6 TROAP FLJ25758 THOP1 GNAZ SERTAD4-AS1 SELT LRRC3B CEMIP GMNN DDX1 GXYLT2 FAM216A TRIAP1 HTRA1 COX7A2 EEF1B2 GLIPR1 RDM1 ABHD10 AP2M1 MKKS RFC4 BDNF INMT TPRKB MT3 ABHD14A URB2 MMP9 MCM5 CDK1 RBM24 SAR1A NDUFB5 MOSPD1 C15ORF48 CA2 NUP43 NRIP3 RWDD4 CKAP2L TAF13 RRM1 NAA10 CCDC58 TAF12 GGPS1 MND1 HAUS7 NGF SNRNP40 DAD1 OCIAD2 SLIRP PFDN2 DYNLT1 ACPT LOC102606465 ASNSD1 MSLN PRPS1 ARHGDIG KIAA0101 ACTC1 SRM ATP5G2 CRYZ SGOL2 C19ORF70 PSD3 RNPEP TRA2B FBXO5 CCL2 UPP1 EIF2D
SARS-CoV perturbation Up Genes bronchial epithelial 2B4 from GSE17400:GPL570:1 MGC10814 ACTN4 HRES1 AP1S1 KRT3 CDC20 CAPN14 FCAMR HIST1H4B HNRNPF KIF20A COL9A3 ANP32C HIST1H4E ASF1B ATF3 IFITM3 ATP5G2P1 IFITM1 NCAPG NCAPH STATH AKAP5 LOC283484 FLRT3 RACGAP1 CPNE2 CYP1B1 C2ORF83 GTSE1 KLF17P1 NFE2 EGR1 EGR2 EGR4 NAPSA LINC00310 PLK1 XRCC1 LOC100506082 MASTL GPR137C OMP TPX2 BIN2 SAPCD2 HAMP PRKD2 NOX3 CDCA2 CDCA3 SLC22A1 CES1P1 LMAN2L TEX28 IFIT2 IFIT1 XGY2 CHTF18 IFIT3 ZNF28 TRPM2 HIST1H3B IER2 SOX9 KCNN4 SERPINH1 JUNB IER5 IER3 TRPM5 JUN DUSP1 TCF15 TESC C9ORF84 ANLN CMSS1 ID1 KRT17 FXYD2 DEPDC1 AARS CDKN3 ERGIC1 CCL27 KIF11 TOP2A CTSZ GRIK4 KIF14 PCSK9 CTSV HOXC12 TK1 ST8SIA5 LOC100506403 PBK EMD RCE1 NFIL3 RNF151 PCK1 CEP55 DLGAP5 IL33 CDKN2C FAM46A MAP1S FOS LOC340178 LBX1 GPR144 B3GNT8 IGLL1 NCAPD2 RGN CKS2 RAMP2 SPC25 NEUROG3 ERRFI1 BRDT SFTA3 TPSD1 SLC43A2 HSCB NUDT1 MKI67 PTMS VMO1 C10ORF71 HLA-DMB CST1 RNF139 PTPRD-AS1 FAM170B NUSAP1 ZNF205 ANKRD13B ANKRD20A9P DNAJC27-AS1 UBE2C RARRES2 SHISA6 BFSP1 ERMN PDGFRL CXCL11 NUPR1 BAMBI BUB1B FAM185A ZNF439 RNF182 CHMP4B CASS4 LY6H MAD2L1 INPP1 TUSC5 ODC1 PPP1R15A AURKA DLST HJURP FBLN2 ATP1A3 CASC1 CCER1 FBL CDH9 ASB17 ZFP36L2 CTGF COMP SLIT1-AS1 ZFP36 BCL2L10 PTTG1 ANKRD31 GAS2L3 KIF22 STIL CYS1 NFKB1 LRRC42 CCNB1IP1 NDC80 LOC100240735 KIF18A TRNP1 ALDH3A1 LOC100996425 IARS KIF2C LOC389332 FGFR3 KLHL15 MSI1 CABP1 PLAT FOXM1 FGF3 CCNB1 BTBD2 LOC100130691 NEK2 PIM3 LOC100132874 CPA5 TIPARP GGH OAS1 SSTR5 NFKBIA RTN4RL1 BCL3 CDK1 LOC149401 MDGA2 LOC100130741 HS3ST3A1 CXCL8 KHDRBS3 L3MBTL4 LRGUK NID1 HSPB9 KCNQ1DN TNFAIP3 HMMR LMNB1 LOC101929144 LRRC16B LOC101928731 FUT5 GRK1 LINC01405 LBR FAM83D POU1F1 RRM2 CKAP2L ANKRD30B SPAG5 LOC254896 KATNA1 PRC1 SHCBP1 CPT1C ASPM JSRP1 LENG1 PSRC1 RP1 DDIT4 TXNIP C3ORF22 C19ORF68 PTX3 MURC EIF3E LOC100130642 C3ORF27 DDX25 PHKA1-AS1 SPATA21 USP18 RND1 OASL SGOL2
SARS-CoV perturbation Down Genes bronchial epithelial 2B4 from GSE17400:GPL570:1 NIPSNAP3A FNBP4 TAAR9 LOC283357 TAAR3 SLC51A CRISPLD2 LGALS14 ARHGEF7-IT1 TNFSF4 PSG7 SEPT7P9 DCP1B SNORA21 LOC100506974 PRSS2 PRSS1 TUBAL3 LOC613266 TESK2 SLAIN1 CLDN2 FLJ32790 ZEB1-AS1 LOC100507250 TMEM68 ZNF561-AS1 CCDC78 RAB11FIP3 LOC100130278 C9ORF135-AS1 BRICD5 NTNG1 PRPF38B AFAP1L2 PAQR6 IL36G TEX14 OR5P3 MACROD2-AS1 CTAGE1 VNN1 C10ORF40 SNHG11 ARRDC3-AS1 SFXN3 MCM3AP-AS1 SPRR1B LOC729218 ACTL7A MTCL1 OR14J1 TXK LOC100127972 TSPAN7 PLAC1 LINC00659 CCDC112 APOBEC4 GSDMB PLAC8L1 OTUD6B TET1 WNT9B GNG13 GNG12 POU6F2 TTLL7-IT1 TH CEACAM8 CFHR4 PIGL LHFPL3-AS2 KBTBD8 LOC100134822 TAS2R41 MOGAT1 SOS1-IT1 LOC440704 SEC14L5 C6ORF57 GPRASP1 LOC100130111 GPR112 LOC101928107 PRORSD1P LOC100190986 C17ORF47 CYP8B1 PTGR2 PRPF39 DHRS9 GPR143 LRRN4CL EPN2-IT1 PELI2 HCLS1 ADAM1A DBIL5P2 LINC00867 ANKRA2 VMP1 SCARNA15 NCAN DPY19L2P3 LOC101927021 FAM223B LOC645485 TDRG1 NPW THSD7A LOC101927948 GABRE LINC00973 LOC100131347 LAG3 LOC100133130 TNK2-AS1 KLHL24 NEAT1 LDLRAD4-AS1 LOC157740 C6ORF141 FAM215A SYPL2 GOLGA8H CAPZA3 TMEM178A S100A9 CHRNB1 GOLGA8B ANKRD36C FRK ANKRD36B GOLGA8A FBLN7 OR1A1 OR2C1 ERV3-2 IFI6 DOCK4-AS1 LOC100287290 CLGN TAF1D BMPER SGK494 TMEM132D CATIP-AS1 PPEF1 LINC01003 FBXO39 MIR21 CYP4F11 SELE INHBE LOC100128554 LOC730961 GOLGA6A SELL CASQ2 MYF6 LOC100652770 TRIM73 KIF28P BZRAP1-AS1 FTX HVCN1 LOC414300 LOC101928161 LOC100507670 SLIT2-IT1 FIRRE LOC100130456 STPG2 TTC14 GUSBP3 RNASE11 MRGPRX3 CCDC38 AHSA2 IFNE LOC157931 IRAK1BP1 OR7A5 MMACHC ZMYND12 OPN1SW LOC257396 KCNK6 DDX43 CELF6 LY96 PP14571 NLRC3 LOC153682 KDSR GRK7 LOC100287497 OR8B2 CFAP44 TAC1 PRPS1L1 RUSC1-AS1 LINC00472 LINC01442 PPBPP2 PVRIG ILF3-AS1 SYT16 RP2 THAP9 UTS2B LOC100134445 NPIPB3 ZNF850 LINC00342 LOC100131180 MSLN OR1C1 CXORF24 LENG8 ACRC TMA16 BSN-AS2 OR2L1P SPDYE1 C3ORF33 MIF-AS1
SARS-CoV perturbation Up Genes bronchial epithelial 2B4 from GSE17400:GPL570:2 C2ORF76 KRT5 ZFP2 MEIG1 LOC286190 DNM1P41 ISL2 ZC2HC1B LOC102723831 LGALS14 TMEM126B HIST1H4H LINC00645 CYP1A1 SPIN2A HIST1H4D HIST1H4F GAGE1 ATF3 CRABP2 STX19 CALML5 APCDD1 CH25H IFNL2 PIRT EGR1 KRTAP9-8 EGR2 CUBN EGR3 EGR4 FOXF2 TNNC2 ARRDC3 OR10C1 BPIFB4 ZNF816 MAGEB1 WFDC10B PROL1 OR6A2 DHH SPI1 CES1P1 MT1X IKZF3 SOX21 LOC101929765 CD1B ZNF28 C6 ARSI HIST1H3H RPL38 JUNB RPS11 IL11 GABRA3 LINC00176 JUN DUSP1 CCL20 BBOX1 SIGLEC10 ISX DUSP9 POU6F2 DUSP8 IL1A TMEFF2 CLDN14 LOC100289026 REL CCL27 CSRNP1 MEFV RRAD GYPC LINC01492 EBI3 KGFLP2 FAM171A1 HBM LOC101928580 HCRT LOC101927379 IL32 PYY2 NOXRED1 FAM46A PGAM2 EMR1 FOS RAB11B C10ORF82 PLEKHO1 FOSB PER1 GHRH TRIML1 IL20 ORM1 TPSD1 AOC4P C16ORF71 SERTAD1 AGR3 IFNB1 RSPO1 CSMD3 C16ORF78 TBC1D10C LOC100507513 LINC00853 LINC01029 SLC9A3 LINC00929 LIN28B C6ORF25 WDR86-AS1 CD69 TBC1D29 LINC01215 OR1A2 MROH2A DPH6-AS1 PPP1R15A FBLN2 ATP1A3 ASB12 TNF GPR63 JAKMIP1 CDH9 RASD2 HIST1H2AE SLC16A8 PRNT TRAF1 INHBA CACNA1G-AS1 GEM ALDH3A1 LHX5 GPR101 TSPY26P CREB5 ND6 LINC00265 PRR23D2 KLHL11 HIGD1B LOC100996671 IGLV6-57 LOC100132078 ZNF645 LRRC4C PROSER2-AS1 HSPA6 LOC100505609 KIAA1661 C7ORF69 MGC24103 LOC284244 SSTR5 NFKBIA IL6 UBQLNL BCL3 SERPINI1 CELP SHANK3 LINC00324 LOC100130741 BCAR4 CXCL8 YWHAE BMP10 TNFAIP3 CXCL1 CXCL3 TOB1-AS1 LOC101928731 BMP15 HIST1H1T C15ORF48 IDI2-AS1 LOC100506122 LOC645188 DNAJB4 CNGA3 MADCAM1 LINC01405 DRD1 HIST1H2AM TSTD2 HIST1H2BG MNDA S100P PTX3 FAM53B-AS1 LOC338963 CD163L1 HIST1H2BL MYRFL LOC285000 SPATA25 LINC00459
SARS-CoV perturbation Down Genes bronchial epithelial 2B4 from GSE17400:GPL570:2 AHNAK2 PLEKHA6 RECQL AMFR ASRGL1 LOC283357 GDAP1 WDHD1 CDC20 MIS18A DNA2 KIF20A ALG10B RHNO1 HRASLS C22ORF39 CCDC68 LOC284219 PNKP NCAPG KIAA1211 ABAT UHMK1 FRAT2 ZEB1-AS1 RACGAP1 IFT74 GPATCH1 CCDC77 E2F7 N4BP2 E2F8 GTSE1 PDZK1 MASTL TUBG1 UCHL3 GPR137C ACE2 FAM111B TPX2 SERPING1 CD302 EZH2 APOBEC3B NAA40 LPGAT1 CDCA2 BEX2 CFI BEX1 MTCL1 CDCA5 NCAPG2 CDCA8 IL20RB GNS PPL GMCL1 TXNDC16 SMC2 ASB16-AS1 SMC3 FAM122B PGBD3 ALKBH6 PLAC8 PRDX5 C10ORF32 DHX16 SEC62 CENPU BBS2 CENPW SHPRH SLC35E3 RMI1 NBPF11 CDC7 SUMF1 ZWINT CENPF KBTBD7 CEACAM7 GIPC2 CENPK UBAP2 AKR1B10 LOC100132884 PET117 SKA1 C9ORF91 CCDC106 KIF11 KIF15 KIF14 TMEM160 EP300-AS1 SLC7A11 IQGAP3 PCSK5 VSIG10L FAM149A CHRAC1 RAD51AP1 LOC100129973 MIS18BP1 TK1 PBK SNX8 HAVCR1 CEP55 DLGAP5 ATAD2 HELLS MBNL3 UBE4A ADAT1 GTF2H3 CIT LOC158402 SPC24 TMEM56 KIAA1279 NCAPD2 NCAPD3 LRRC19 SMG1 SPIN4 NOTCH2NL DIRAS3 CIPC SLC20A1 MKI67 JPH1 UNG PIGW ROBO1 PIGZ CENPC UBL3 NUF2 GPNMB PLAGL1 HRAS NUSAP1 ZNF566 DCPS SLX4IP LOXL1-AS1 C3ORF80 LIG1 TFPI2 ALYREF NOSIP VRK1 KLHL24 MSH2 GTF2F2 GRHL2 TMEM133 SLFN13 MELK UBE2S BUB1B EOGT KIF4A SNRNP25 MPHOSPH9 CCDC152 ANKRD36B ZNF431 GALNT12 ZNF791 ARID4A HJURP CASC3 METRNL IFI6 TUBA3C ABLIM1 HMGN5 TUBB6 TUBA3D RBBP5 TAF1A LAMP3 SLC16A7 USP1 DMAP1 KNTC1 FANCI CD97 ACBD6 SMAD5 STIL IDH2 TTC31 TTC32 FST CYS1 LRRC45 MED29 NDC80 MAFF DMXL1 DCTD TMEM237 MED22 THOP1 KIF2C RNASEH2A MAD1L1 FGFR3 RNF166 EID2B CRISP3 SLC26A2 FAM13B FAM107B TTF2 TRHDE FOXM1 DDX60 HHAT TPR NRTN MAN2A1 SAC3D1 SYBU RFC5 RFC2 MMP1 HSPA2 LAMB2 NEB DDHD2 LAMB1 LOC642361 IMPACT MCM4 TRIM59 MCM5 MNS1 MCM7 ALMS1-IT1 PRTFDC1 MCUR1 LOC338620 VPS4B TNFAIP6 PSIP1 HMGB3 DDX43 MTIF2 HS2ST1 LMNB2 CA2 KDSR ORC1 VPS51 PHACTR3 ACP6 RDH14 ZNF623 LONRF2 C8ORF88 EIF3A RRM2 RRM1 SPAG5 ILF3-AS1 PRC1 HAUS6 SHCBP1 ASPM VPS41 CRY1 DTL SNRPA1 ZNF850 PRPS2 CDCA7L SEMA3E CCDC28A ETFB PSD3 ARL13B NHS C3ORF33 LOC339803
SARS-CoV perturbation Up Genes bronchial epithelial 2B4 from GSE17400:GPL570:3 STARD4 TEX30 SP110 MX1 SLC35A1 ARL14 RSAD2 MX2 YOD1 PSMB9 PML PSMC6 LAP3 XRN1 IFI27 RPL22L1 IDO1 STX16 IFITM2 IFITM3 SAMD9 ATP5G2P1 SP100 IFITM1 GORAB TRANK1 UBE2L6 APOL6 IFNL1 HERC5 PDCD10 IFNL2 IFI16 CREB3L3 GBP1 CHAC2 CCNL2 CCNL1 APOL1 GBP4 EPSTI1 BATF2 SNHG1 ZRANB2 GADD45A USMG5 SNHG5 MASTL COMMD8 IFI44 PARP14 PARP12 SCGB1C1 SNHG12 PSME2 APOBEC3B ZNF257 RPS24 SCOC C5ORF28 BCL10 IFI35 IFIT5 C12ORF60 GSKIP ZBTB6 MRPL13 IFIT2 IFIT1 IFIT3 LIPG RNF213 MT2A HELZ2 SYNPR PLAC8 TNFSF10 LGALS9 LOC441179 GABRA3 DUSP5 C17ORF67 PNPT1 ANXA1 TAPT1-AS1 PHF11 CCL20 NMI C10ORF99 CENPE CENPK CDKN3 TLR3 CCL27 ZFAND2A FASTKD3 SECTM1 MRPS11 RPS27L ADRB2 CASP16 TMEM27 TRIM5 C1QBP LOC727820 ANKRD49 STAT1 PYY2 MRPS23 METTL4 ACOT13 ACTL9 PARP9 PSMA6 C10ORF82 HNRNPA2B1 CMPK2 CKS2 CAB39 TMEM140 MS4A6E IFIH1 PSMB8 NUF2 UCN2 HYAL4 AGR3 MIR22HG IFNB1 DKFZP434I0714 MDH1 CD58 GABRE LINC00973 CD55 LMO2 ZBP1 PPIL1 TOR1B AOC3 RARRES3 TAP1 CTSLP8 NEAT1 CXCL10 CXCL11 IFI44L ZNFX1 FAP UBLCP1 TMEM178A SNRPG MAD2L1 GOLGA8B STEAP1 GOLGA8A PSMB8-AS1 SH3PXD2A-AS1 GEMIN2 GTF2B GIMAP2 OVOS2 ERV3-2 ZFAND1 LOC646903 GPR63 SAMD9L BASP1 CAPN8 GBX2 RNF19B LAMP3 ZUFSP SLC25A46 ZNF302 LINC00276 ATP6V0B TIA1 DDX58 USP44 NEK7 TDRD7 ISG15 MIR21 WASH3P ISG20 MYD88 SELO NT5C3A CT83 KIFC2 OSTC MOB4 DKFZP586I1420 UBA3 XAF1 SELT CD274 GOLT1B COX7A2 NTS DDX60 ACN9 NRD1 MLKL HADH LRRC4C USP26 DTX3L AHSA2 PILRB OAS1 IRF1 IL6 OAS2 OAS3 DNAJC7 IRF2 EFHC1 IRF9 IRF7 CXCL8 NPR2 C4ORF36 UAP1 CXCL1 NLRC5 C15ORF48 IDI2-AS1 EMG1 CASP7 ORC4 DNAJB9 CASP1 C8ORF59 NDUFA1 HSH2D UFM1 KLF6 C1D C19ORF66 HNRNPU-AS1 LRIF1 MNDA S100P ACKR4 RBMX NUP37 ITGB3BP BET1 ASNSD1 RTP4 CD163L1 DDX60L PPM1K LENG8 TTK USP18 MYRFL TNFSF13B OASL SAMHD1 SLC25A28 SPATA25 NPIPA1 TRIM21 TRIM22
SARS-CoV perturbation Down Genes bronchial epithelial 2B4 from GSE17400:GPL570:3 WSB2 ENTPD4 AHNAK2 LOC283357 HIST1H4C PPP1R3D CCDC42B ASB8 ZNF713 TRIM16 REC114 TP53 SNORA21 PPP1R2P9 CISD1 CLDN2 UHMK1 CRKL BBX MXI1 ST3GAL1 LOC100130278 SRGAP2C PROSER3 MIR663AHG PAQR8 GINM1 FZD8 VPS13B PRRC2C FAM111B GJB2 PIK3R1 TLCD2 APOBEC3C GLTP LPGAT1 DIS3L TMEM181 GNS C1ORF174 SMC5 ICAM1 SMC3 LARP1 RASSF6 GOLGA2 LIPH HOXC6 KIF21A ZBED1 ZBED6 NCOA3 FOXD1 ASH1L TET1 NUTF2 CP CDC6 GNG12 TMC5 LYZ LOC100287525 KBTBD6 DEPDC7 SIKE1 IQCJ-SCHIP1-AS1 GARS EP300-AS1 LIAS PCSK5 GLG1 MECP2 HINT3 CTSO KIF1A MLEC ANKRD1 LOC400043 TEAD1 HAVCR1 BBS5 ZNF461 TTC3 ADAT1 GTF2H3 F5 SYNJ2BP SPC24 TMEM159 LCE2B GPAM NCAPD2 LOC101928909 TRUB2 ZNF573 SMG1 TGFB1I1 KIAA1033 TRAK2 SH3RF1 NPW EP300 APPL1 RPL13P5 SLX4IP LOXL1-AS1 C3ORF80 CORO2A ALYREF CRIM1 GRHL2 LOC100506699 GTF2I CCNT1 PDCD7 UCP2 UBN1 NOL9 IFI6 NDRG3 PAPSS1 GALNT11 PAPSS2 EFNB2 YY1 ABLIM1 RBBP5 CCND1 CDH1 DNAJC22 SLC16A7 KPNA6 MYH10 SMAD5 INHBE CYS1 FBXO33 MFHAS1 CENPBD1P1 CKAP4 CDC42EP5 STT3A PCYOX1 CEP104 ATP6V1A PMCH RASEF POGK C1ORF210 AK4 LTN1 PPP1R9A IGF1R GLIS3 NIPBL TPR KIF3B KIF3A TMEM107 OIP5-AS1 CEP350 NRTN UTP20 SAC3D1 EIF5B CBX5 SMURF2 SECISBP2L DNAJC3 MEIS2 IRAK1BP1 CLCN5 TRIM59 NDUFS1 TMBIM6 TOP1 TNRC6B KDM5A KCNK6 NFAT5 TAS2R9 CHD4 SPAST PSTPIP2 RASGEF1C ORC1 CASP2 ZNF623 CCDC186 SMIM10 FAHD1 SPAG9 DDX17 PDPK1 ATRX ILF3-AS1 KANSL1-AS1 SGPP2 ZFP91 ASPM EHBP1 KPNB1 RUNDC1 KCTD12 RBM41 CSNK1G1 TAF3 FOLR1 CLUAP1 ZNF850 LOC100505501 PRPS2 SLC47A1 RBM27 PNMAL1 USP10 THRB SEMA3E TULP4 KIAA0100 JPX FAM154A HECTD1 SGOL2 PSD3 SCRN1 NHS ERC1 C3ORF33 LOC400464 CNNM3 HCG11
SARS-CoV perturbation Up Genes bronchial epithelial 2B4 from GSE17400:GPL570:4 IQCF4 KRT3 LOC497256 LOC101929450 ERMN RNF41 POU4F3 LOC283075 THNSL1 FLG2 ARMC2 EID2 PSMC6 BOP1 MTHFD2 PSAT1 UBLCP1 RNF182 DEGS2 PCDHB5 ULBP1 LL0XNC01-116E7.2 ACOT7 TCTA LINC00487 WFDC12 SCT RALB INPP1 DBR1 ODC1 RRH ZFAND1 DLST ASAP2 GTF2E1 HS6ST2 FBLN5 FAM132B PCMT1 DPYSL2 NUDT16P1 C1ORF106 SH3BP4 HSD17B2 TWISTNB PEBP4 TYW1 PIP4K2C TRAM1L1 ZNF304 LINC01209 LINC00597 MB21D2 NFE2 IGFBP1 EIF2B4 ATP6V0B SLC30A9 FAM103A1 SLC6A18 XRCC4 FST LINC01087 FLJ31356 ENTPD3-AS1 IGSF11 VAMP7 SELO H1F0 ABCA11P BIN2 PKIB REEP4 CSNK2B MEIS3P1 HAMP IARS CDC42EP1 ATF4 CERS2 ATP6V1B2 SLC22A4 CETP ZBTB8A DDX5 LOC101929524 PXN CBFB TTYH1 METTL2B PDGFC MSI1 PLAU ART4 DEDD2 ADH7 FAR2P2 CCDC91 KRTAP4-4 LINC00536 PIP5K1C TUBB7P TP53BP2 PRKACB HADH DUSP5 RBM18 LOC400548 GFPT1 C1ORF162 CDIPT-AS1 SLC10A3 SAP30L-AS1 ITGA2 EMP1 IL18 PJA1 MLF2 LOC101927354 LOC100129620 MIR4500HG AFTPH KRT16 LINC01019 CARM1 IRF9 CYP4Z2P SKA1 CLIC4 ZFAND2A HSPB9 LOC729680 LAMC2 LRRC16B LRRC31 EMG1 FUT8 ERI3 C1QBP PHACTR3 TAC4 ZNF624 OR51A1P ZNF468 TPRA1 MAP4K3 CXORF30 NDUFA8 YTHDF3 CDKN2B FEM1C CHUK LOC100131053 UBE2E2 RNASE6 YWHAZ RAB11A JSRP1 TPST2 UFM1 TTC8 XPOT AGPS LOC340340 SDHAF2 ZBTB46-AS1 MMADHC TRIB3 CCDC173 BRDT SFTA3 MTCH2 GFM2 ZNF571 PRPS1 UGT2B28 CAB39 LPCAT1 NUS1P3 HCCS SEMA3G TUBA1A CYSRT1 SULT1E1 DNER LINC00337 LINC00612 AADACP1
SARS-CoV perturbation Down Genes bronchial epithelial 2B4 from GSE17400:GPL570:4 ESCO1 LINC01184 PLEKHA4 SCAMP1 C9ORF43 SRRM2 CAPN12 HNRNPL HIST1H4C RFX7 SNORA21 MTPN NCAPG LOC100996255 CISD1 MRGPRF SDAD1 CLDN2 MLLT4-AS1 UHMK1 HERC1 BBX TGS1 LOC440982 GBP2 LOC100130278 HOXA6 FER1L4 TMEM184A EGR2 KLF13 MIR663AHG GINM1 VPS13B PRRC2C OCLM ARC FAM111B LOC399884 BTK CELF2-AS1 TLCD2 MCM3AP-AS1 CAPSL CDCA7 TMEM181 SMC5 SMC3 ZNF321P LOC100127972 TMEM88 LOC100505650 RASSF6 TSPAN7 GOLGA2 FAM110C KIF21A LOC147791 PPP1R10 TNFSF10 RPL38 ZBED6 ZNF367 CCL26 C17ORF67 NCOA3 AASS BBOX1 MMEL1 TET2 LHFPL3 CP GNG12 TMC5 DEFB132 PTMA CYP11B2 LOC100289026 GPR128 LOC100134822 RNF145 TLR3 LOC400958 FOXC1 MOGAT1 TOP2A KGFLP2 KIF15 EP300-AS1 MIR30C2 PAXBP1-AS1 SHANK2-AS3 C8G HINT3 CTSO KIF1A RASSF10 MLEC ANKRD1 EHMT1-IT1 LOC400043 TEAD1 BBS4 ZNF223 HELLS ATAD5 THOC2 TTC3 ADAT1 GUCA2B LIMA1 FLJ36848 SYNJ2BP SPC24 TMEM159 AGBL2 RFWD3 NFIC GPAM SEMG1 STAC3 ADAM1A TRIP13 SPC25 DYNC1H1 HSD17B7P2 TMEM151A SCARNA15 CSTA SMG1 SPANXA2-OT1 MIA2 KIAA1033 DEFB123 DCST2 LOC100128988 RSF1 ADAMTSL2 FAM223B RSRC1 NPW EP300 SOSTDC1 NUSAP1 SH3GL1P1 ZDHHC8P1 ZNF567 SNORA71B LINC00853 LMO2 ZNF442 SLX4IP GINS1 CDX2 RASL10A ALYREF TRPV1 GHET1 NEAT1 SLFN13 PPIG BLID ANKRD36C SLC25A36 ANKRD36B GOLGA8A DGKH CHRM3-AS2 LINC00485 PDCD7 SLFN5 ERV3-2 UBN1 CWC27 IFI6 SAMD9L SLC9A2 ABLIM1 TCEAL3 TAF1A BMPER DNAJC22 SLC16A7 C18ORF42 LINC01207 CCDC142 MYH10 GAS2L3 ATOH1 SMAD5 PNISR GCKR HPS5 CACNA1G-AS1 FBXO33 SMAD9 MFHAS1 CCNA2 KIF18B LOC100286895 LOC729732 TMEM238 MALAT1 XAF1 RSRP1 PCYOX1 ST6GALNAC6 ND6 TRIM73 RASEF ANKRD12 BOD1L1 LOC101927746 LTN1 PKMYT1 GLIS3 LOC100130458 GLT1D1 TPR SSX5 SLIT2-IT1 LOC100131662 FIRRE LINC01106 EIF5B PRRT2 LINGO2 TTC14 SECISBP2L NFKBIZ MYOD1 NPSA CDC42BPA TGFBR3 CRYGD IFNE MEIS2 ACTA1 CLCN5 CRYGA HOOK1 THRAP3 TRIM59 NDUFS1 CUEDC1 TOP1 PRAC2 NFAT5 FAM114A1 ONECUT2 LMNB1 ORC6 PLTP TMEM207 P2RY1 NAA25 CCIN LOC100130078 CEP290 MAGEA12 CCDC186 LOC100130872 RUSC1-AS1 COA7 FNIP1 LINC00472 TAF15 ATRX GLP2R ILF3-AS1 SHCBP1 KANSL1-AS1 TM6SF1 ASPM EHBP1 KPNB1 FMNL2 PSRC1 RBM43 DKFZP434J0226 LOC100134445 MAP3K14-AS1 PKHD1L1 NPIPB3 RP9 RBM41 CSNK1G1 FOLR1 EIF3C HIST1H2BO CST9L LOC100131180 RBM27 USP10 LENG9 KIAA0100 HDAC9 FAM179A JPX C1ORF94 HECTD1 SGOL2 EXO1 PSD3 LOC100289333 CCDC160 MIF-AS1 CNNM3 HCG11 BCO1 INSL5
SARS-CoV perturbation Up Genes bronchial epithelial 2B4 from GSE17400:GPL570:5 CASC23 SP110 MX1 RSAD2 HOMER1 MX2 PLEKHA4 PSMB9 PML CPEB2 LAP3 XRN1 IFI27 HIST1H4H HCG26 CYP1A1 MT1H TRIM16 HIST1H4D LINC00520 HIST1H4E IDO1 CDK17 MT1F ATF3 MAP10 IFITM2 RFPL3S IFITM3 SAMD9 SP100 IFITM1 STX19 LOC285422 LOC283484 UBE2L6 CH25H PSMB10 APOL6 NXF1 IFNL1 HERC5 IFNL2 IFI16 GBP1 CYP1B1 CHST15 HES4 LOC145474 CCNL1 MT1HL1 GBP4 EPSTI1 EGR1 BATF2 EGR2 EGR3 EGR4 ALDOAP2 ARRDC3 PLK2 KLF10 SNHG9 BAZ1A MASTL IFI44 PARP14 MOV10 PARP12 ARC SNHG12 PSME2 HAMP PRKD2 PLA1A NPFFR2 OXTR LOC284912 IFI35 IFIT5 MT1X KLHDC7B ZBTB6 IKZF3 IFIT2 RXFP2 IFIT1 ICAM1 IFIT3 LIPG RNF213 MT2A HELZ2 PLAC8 ZC3H12A TNFSF10 TP53BP2 JUNB RIMKLB LGALS9 CEP76 LINC00896 IL11 CCR1 PNPT1 WARS JUN TSC22D2 IL15 CCDC117 PHF11 DUSP1 DUSP2 CCL20 NMI SIGLEC10 TET1 BTN3A3 DUSP8 IL1A ITPKC BST2 CEACAM1 THEMIS2 KRT17 REL TLR3 CSRNP1 RRAD ZNF213-AS1 ZC3HAV1 NEDD9 ADRB2 CX3CL1 SBNO2 TMEM27 TRIM5 MAP2 NFIL3 TPRA1 IL32 STAT1 PLIN1 G0S2 FAM46A FOS SERPINB9 ANO3 PARP9 SLC22A24 TJP1 CCNE2 FOSB PER1 B3GNT5 CMPK2 IL17B VMP1 DEFB127 TMEM140 PTGS2 IFIH1 PSMB8 SERTAD2 LOC100507194 RSRC2 SERTAD1 IFNB1 HDX LMO2 ZBP1 TOR1B FBXW11 OSR2 RARRES3 GPT2 TAP2 TAP1 TICAM1 CXCL10 CXCL11 IFI44L ZNFX1 MTNR1A CFLAR-AS1 NUPR1 LOC100130428 FAP CLUHP3 TRAFD1 SIDT1 CD69 SLC28A3 CD83 SLFN5 PPP1R15A GIMAP2 SAMD9L TAF1L RELB GBX2 LAMP3 LOC100505478 HIST1H2AE ZNF426 KIR2DL5A CMTR1 MICB CD96 SLC15A3 DDX58 USP44 INHBA TDRD7 ISG15 SMAD7 KMO GEM RCAN1 ISG20 NR4A2 MYD88 NT5C3A LINC00944 XAF1 MAP3K14 CREB5 C11ORF96 CD274 PRR23D2 LINC01350 KLHL11 GPR87 ETS2 DDX60 ZNF649 SNIP1 PMAIP1 MARK2 CYP2J2 TIPARP HSPA6 DTX3L HMGCS1 EIF2AK2 OAS1 ETV7 IRF1 NFKBIA IL6 OAS2 OAS3 IRF2 BCL3 HLA-DRA IRF7 NFKBIE NFE2L3 CXCL8 NID1 GMPR TNFAIP3 CXCL2 CXCL1 NLRC5 DUSP16 AFF4 CXCL3 C15ORF48 DUSP10 IRAK2 CASP7 DNAJB4 DRD1 CASP1 IL15RA PLAUR KLF4 WEE1 HSH2D KLF6 C19ORF66 DNAJA4 HNRNPU-AS1 HIST1H2BG ACKR4 PTX3 FAM53B-AS1 HIST1H2BO SEMA3A RTP4 MIR155HG DDX60L THBS1 USP18 HDAC9 NR3C1 MYRFL TNFSF13B OASL SAMHD1 SLC25A28 CCL5 UGT1A6 FBXO6 CTNNAL1 TRIM21 ZNF600 C3ORF35 TRIM22 RBM34
SARS-CoV perturbation Down Genes bronchial epithelial 2B4 from GSE17400:GPL570:5 RALBP1 SLX4IP ACTN4 AP1S1 AHNAK2 NPY1R KLHDC2 ALYREF LOC283357 AGT HIST1H4C RRAGD UBE2S LOC100147773 ZNF713 ALDH8A1 LETMD1 RPL23AP32 SLC25A36 ANKRD36B PRSS2 PRSS1 FAM129A CISD1 IFI6 PAPSS1 CLDN2 NDRG1 PAPSS2 UHMK1 CLGN ABLIM1 EPB41L4A-AS1 HSD17B2 BBX MXI1 DNAJC22 ABI3BP SLC16A7 SEPHS2 MYH10 PRSS3 SMAD5 PMM1 IDH2 BNIP3L CYP4F3 CAMLG TMA7 CYS1 SNHG5 VAT1 ACE2 TFDP2 NOSTRIN STT3A HYOU1 TLCD2 PCYOX1 SPRR1B LINC00543 CLRN3 LPGAT1 ANP32B MAGED1 ANP32A MPHOSPH10 FAM13B TXN AK4 LTN1 PPL PLAT ZBED5-AS1 GMCL1 LARP1 PRRC1 C12ORF57 LGALS4 PPP3R1 HHAT PRDX5 LGALS1 KIF3A C10ORF32 ARL6IP5 LTA4H SEC31A CTSB DUSP4 MMP1 SLC35E2 HSPA5 SECISBP2L NEB BFAR SUMF1 TMC5 LYZ PJA2 GLUD1 DNAJC3 FAM210B LOC100287525 TH RBL2 RASA4 CEACAM7 HOOK1 CEACAM6 COPG1 TRIM59 UBAP2 TFF2 NDUFS1 AKR1B10 ACO1 SERINC3 MGLL LOC257396 RNF145 TNRC6B SERINC5 ERGIC1 YWHAB LOC338620 MOGAT1 ARPC1B ONECUT2 CTSZ SLC7A11 HINT3 SLC22A18 MARVELD2 ERICH5 MLEC LOC400043 LONRF2 BCAS3 FAHD1 ZNF581 PDPK1 NICN1 ANXA13 TTC3 ADAT1 SLC2A10 RNASE4 KANSL1-AS1 F5 ASPM MLPH TMEM159 TST GPAM SLC39A10 TMEM57 MAB21L3 KCTD12 ANKRA2 PRPS2 CDCA7L CSTB LRRC19 CCDC47 ITGB5 LENG9 ETFB SNX12 TRAK2 TUBA1A CXXC5 HSD17B11 CRIP2 ROBO1 SH3RF1 CRYZ NT5DC1 FOXQ1 RBM3 PSD3 SCRN1 GPNMB NEFL NHS MIF-AS1 CNNM3 RPL13P5 HCG11
SARS-CoV perturbation Up Genes bronchial epithelial 2B4 from GSE17400:GPL570:6 STARD4 B3GALNT1 MX1 PCGF5 MX2 GTPBP2 PSMB9 IDO1 HCP5 OPTN CDK17 ATF3 EHF SAMD9 CH25H APOL6 IFNL1 IFNL2 GPBP1 MVB12A GBP1 GBP3 HES4 GBP2 APOL1 MT1HL1 GBP4 EPSTI1 ZNF267 APOL3 BATF2 NAPSB FZD5 BAZ1A MASTL MOV10 PLEKHS1 PLSCR4 SERPING1 LGMN PSME2 PRKD2 PRR15 CFB HLA-DRB1 CFH TAPBPL LIPA C3 IL4I1 FAM122C LIPG RNF213 NUB1 PLAC8 SLC19A3 C5ORF56 PNPT1 GSDMB PHF11 CCL20 SEC16B TMEM173 RNF149 MTF2 ACHE GRAMD1C ZC3HAV1 LOC344887 TMEM27 PANX1 TRIM5 TRIM6 GPR115 STAT1 STAT2 TMEM62 DHRS2 SERPINB9 PSMA6 LOC101927027 OGFR TMEM140 IFIH1 PSMB8 IMPA1 ADAM28 NAMPT SMCHD1 FLJ32255 HLA-DPA1 MIR22HG RICTOR THAP9-AS1 JAK2 SLC16A1 TOR1B GPT2 TAP2 TAP1 TICAM1 NEAT1 MOB3C CXCL10 CXCL11 C1ORF116 TRAFD1 LY6E SLC28A3 GOLGA8B PPP1R15A GTF2B ATP10D METRNL CXCL16 CXCL17 RNF19B LAMP3 RBBP8 MAP3K8 IFNA14 TIA1 SLC15A3 IFNA16 FRMD3 MYD88 NT5C3A XAF1 SP140L BIRC3 CD274 IRS1 FMR1 SAT1 TRIM69 MAP2K6 DTX3L EIF2AK2 CFLAR HLA-DRA OR52K3P NFE2L3 PLEKHF2 WHAMM GMPR NLRC5 C15ORF48 MDK DNAJB4 PHACTR4 DNAJB9 PATL1 STYK1 ERAP2 ZBTB33 LYSMD2 BPGM KLF4 DNAJA1 KLF6 LOC340340 HNRNPU-AS1 TRIM38 NPIPB3 PIK3AP1 BLZF1 SEMA3A C1R TRIM31 MIR155HG C1S DDX60L PPM1K TNFSF13B FYB SLC25A28 DHX58 CCL5 TRIM25 TRIM26 FBXO6 TRIM21 ZNF600 ARL5B TRIM22 BCO1 SP110 ARL14 RSAD2 PLEKHA4 PML NEURL3 LAP3 XRN1 IFI27 TRIM14 MT1H MT1F STX16 IFITM2 IFITM3 CCDC68 SP100 IFITM1 TRANK1 GLRX UBE2L6 PSMB10 STS HERC5 IFI16 CCNL1 N4BP1 EGR1 RABGAP1L EGR4 APOBEC3G TNFSF15 TMEM50A ARRDC3 COG3 C8ORF4 HLA-B IFI44 HLA-E PARP14 HLA-F BTC PARP12 NCEH1 PARP10 VNN2 SNHG12 PLA1A APOBEC3B IFI35 IFIT5 MT1X KLHDC7B ZBTB6 IFIT2 IFIT1 ICAM1 IFIT3 ART3 MT2A HELZ2 NUDCD1 TREX1 FAM65B TNFSF10 IL12A RIMKLB LGALS9 CCR1 WARS BTN3A2 IL15 BTN3A1 NMI BTN3A3 OSMR IL1A BST2 CEACAM1 KITLG THEMIS2 KRT17 IL18R1 TLR3 FOXC1 SECTM1 ADRB2 CX3CL1 CTSS SOCS1 MAP2 CD38 CBR3 IL33 IL32 PARP3 GCH1 FAM46A PARP8 PARP9 NEDD1 CMPK2 CD47 IFNA2 IFNA1 IFNA4 CAB39 PTGER4 DIRAS3 MIA2 IFNB1 HDX XDH GABRE RAB8B CD55 LMO2 ZBP1 CD74 GCA CCDC109B RARRES3 LIFR PDGFRL IFI44L ZNFX1 SLFN11 NUPR1 FAP FAS SIDT1 PSMB8-AS1 TYMP SLFN5 NAPA GIMAP2 SAMD9L RELB CMTR1 MORC3 MICB AZI2 CADPS2 DDX58 USP44 INHBA TDRD7 ISG15 MIR21 ISG20 MXD1 PROCR SELL GNB4 NMUR2 CHMP5 ZCCHC2 PXK SH3KBP1 LGALS3BP JADE2 RASGRP3 ETS2 DDX60 TGM2 MUC13 PMAIP1 MLKL MARK2 CYP2J2 TIPARP NFKBIZ OAS1 ETV7 IRF1 NFKBIA IL7 IL6 OAS2 OAS3 IRF2 RBMS2 IRF9 IRF7 NFKBIE SCAMP1-AS1 CXCL8 UBA7 BCL2A1 TNFAIP3 CXCL2 CXCL1 ADAR CXCL3 FUT4 CASP7 BLNK CASP1 RHBDF2 IL15RA PLAUR SOD2 LOC100288911 HSH2D C19ORF66 ACKR4 PTX3 DYNLT1 TRIB2 RTP4 SIX1 RND3 USP18 OASL SAMHD1 CHSY1
SARS-CoV perturbation Down Genes bronchial epithelial 2B4 from GSE17400:GPL570:6 SLX4IP BRI3BP C3ORF80 UBE2C AP1S1 AHNAK2 ASRGL1 CDC20 HIST1H4C RRAGD SHISA2 ZNF713 KIF20A PANK1 CERK UCP2 NCAPG PAPSS1 CLDN2 NDRG1 PAPSS2 UHMK1 DPYSL2 RACGAP1 MXI1 SLC16A7 MYH10 SMAD5 IDH2 BNIP3L NBEA CYS1 VAT1 HOGA1 SAPCD2 NOSTRIN PCYOX1 CLRN3 PFKFB3 GLTP CRISP3 CDCA3 DANCR ANP32B MAGED1 TMEM181 ENO2 TM7SF2 HIST1H3B GRIN2A ZMAT3 LGALS1 PMEPA1 ARSE SAC3D1 CMTM4 CBX5 SLC35E2 SECISBP2L NEB NMU MNS1 NDUFS1 AKR1B10 ACO1 CDKN3 SERINC5 ERGIC1 EIF4B ABHD2 TOP2A HMGB3 KIF14 SERPINA6 CA9 LONRF2 HAVCR1 C8ORF88 DDX17 ANXA13 KANSL1-AS1 ASPM TMEM159 NCAPD2 KCTD12 PCOLCE2 GALM SEMA3E TRAK2 TUBA1A CLN8 CRIP2 SGOL2 PSD3 SOSTDC1 NEFL NUSAP1 HCG11
SARS perturbation Up Genes PBMCs GDS1028:GPL201 IL1R2 ACTN1 C20ORF24 MYL6 SLPI VIM RPL28 MYL9 TLN1 PFN1 CDA PDXK RPL12 UQCR11 GNG5 PSMD4 ALOX5 CAPNS1 TCEB2 RABAC1 B2M S100A10 RPL18 SNCA S100A11 ELANE NFE2 COX8A JUND GABARAPL2 PHC2 RPL41 SLC11A1 CYP4F3 PPBP TALDO1 MANF HLA-B HLA-G EIF1 RPS26 RPS28 RPL27A TCN1 PADI4 VAMP3 ATF4 HLA-DRB1 CFD RNH1 SPARC TXN ENO1 IFI30 CFP RPL8 RPS16 CYB5R3 RPS15 GNG11 LGALS3 RPS17 LGALS1 PRKAR2B FTH1 RPL37 HIST1H3H LTA4H RPS10 CD14 RPS11 RPS14 CTSB CTSA ANXA1 ANXA2 ANXA3 TPI1 TSC22D1 SSR4 AMPD2 GNB2L1 EMP3 AZU1 RHOG TLR2 THEMIS2 CEACAM8 CEACAM6 TAX1BP3 ALDOA CD24 SGK1 RAB5C SERPINA1 ARF1 HBB ARPC1B HBD FPR1 OAZ1 SEC61B SH3BGRL3 RSU1 CTSH TIMP1 NFIL3 CTSG CLIC1 PACSIN2 CAMP PF4V1 MMD DYNLL1 ARG1 PGAM1 SERPINB1 G0S2 GSTO1 CREG1 LAPTM5 CNPY3 RNASE3 RAB11A PGRMC1 RNASE2 HCK NGFRAP1 PLP2 TKT MSRB1 COX5A CD63 GRN CSTA F13A1 RPLP1 PYGL WAS CAPG CRIP1 TUBA1A LILRA3 COX5B PTGS1 CST3 SERP1 PSMB3 PSMB4 TSPO MTX1 PGLYRP1 TGFB1 GSN GCA DEFA4 POU2AF1 TYROBP RAB31 TMEM258 UQCRQ FAU CLC ZYX S100A6 PF4 PTPN6 S100A9 S100A8 FCN1 CSF3R ODC1 ITGA2B PPP1R15A HP PARK7 MPO CLU TYMS HSP90B1 COX6A1 PYCARD CCND3 BASP1 LAMP1 CFL1 COTL1 CHP1 RPS3 HMGN2 HIST1H2AC MGAM CD97 ATP6V0C ATP6V0B CYBA PGD ARPC4 LCN2 UBA1 PRTN3 BLVRB VCL CRISP3 C5AR1 IRS2 NCF4 ACTG1 SLC2A3 CORO1A CSF2RB UQCRH MAP3K7CL SNN UBB FLOT2 GYG1 TMSB10 GPX1 MMP8 SRGN NDUFC1 MMP9 NFKBIA VCAN RPL37A MAN2B1 MS4A3 CHI3L1 R3HDM4 COPE GPSM3 ILK NDUFB4 TNFAIP2 HK3 CA2 FCGR3B ATP5E UQCRFS1 SERF2 H1FX RRM2 H2AFZ RNASET2 ALOX5AP TAF10 RPL23A ANXA11 PLAUR SORL1 PKM CAT MNDA RGS10 S100P EIF3F BPI LTF FOLR3 SLC25A5 GAPDH ITGB2 MTCH1 CEBPB EIF4A1 CEBPD HIST1H2BK FHL1 DYSF YBX1 TCIRG1 SLC4A1 YBX3 U2AF1 ITGAM NRGN ALDH2 FBXO7 CHCHD2
SARS perturbation Down Genes PBMCs GDS1028:GPL201 RPL22 RPL21 RPL24 CNBP RPL23 DEK RUNX3 CD2 HNRNPK LPAR6 CALM2 LEF1 IFITM2 IFITM1 IL2RG RNF6 RPS4Y1 IFI16 RPL15 RPL14 RPL17 RPL19 SF3B1 PRKCH BCL11B ST6GAL1 HLA-C HLA-A PUM2 IFI44 RPS27 RPS29 VNN2 PRKAR1A ITM2A RPS25 RPL5 RPL6 GABARAP MACF1 SPON2 RPL30 RPL35 RPL34 PRF1 IKZF1 GATA3 RPL9 RPL7 KLRK1 RPS19 FAM65B TNFSF10 RHOA BTN3A2 DUSP1 PTGES3 IL10RA COX6C PTPRC RAP2B ID2 ATM ARHGEF3 ITK CRLF3 DAZAP2 TRAM1 YTHDC1 BTG1 CSDE1 LITAF CTSW CD3D CTSS LDHB STK38 CCR7 FCER1G RPS15A RPS27A MBNL1 CD53 CAP1 NPM1 CD52 STAT1 GCH1 MBD2 STAT4 UBE4A FOS ADAM10 HNRNPA2B1 HLA-DPB1 CD48 CD44 CDKN1B CDKN1C GDI2 FAIM3 SLC20A1 CST7 XPO1 AKAP11 GNLY RSRC2 SRSF11 JAK1 LAIR2 CD164 CD74 RPS6 GPR56 MORF4L1 IFI44L PPIA XIST KLRD1 PDCD4 SRSF5 S100A4 ROCK1 CD81 ZFP36L2 PCNP ABLIM1 LAPTM4A CCND2 TBX21 S1PR1 RPS5 RAB29 HMGN4 CAST SLC38A2 TIA1 NONO NKG7 CYBB DYRK1A EIF2S3 LOC399491 TRAF5 NACA CD8A SELL TCF7 KLRB1 SNRNP200 BIRC2 EIF4G2 IL7R MYOM2 DDX5 CBFB IL18RAP RASGRP1 RGS2 FNTA ACTR3 ACTR2 HSP90AA1 ITGA4 HSPA8 SMARCE1 RPL13A PPP2R5C RPS3A TGFBR2 SON ARL4C RBL2 OAS2 LCP1 EEF1D ERBB2IP HLA-DRA CD247 LUC7L3 MS4A1 KHDRBS1 EIF4B DDX3X CELF2 CASP8 RPL36A SARAF LPXN CASP1 RBM39 GZMB GZMA YWHAZ KLF2 GZMK LCK CLEC2B IL2RB TXNIP LTB MATR3 PFDN5 EIF3E KLRF1 EIF4A2 HDAC1 PLEK CX3CR1 RPL10A ADD3 SEPT9 SEPT7 MAT2B POLR2B CCL5 CCL4 SNRPB2 BUB3 HNRNPA1
SARS perturbation Up Genes airway epithelium (HAE) from GSE47961:GPL6480:1 CDON HEXIM2 ZNF285 ZFP2 HSPA1L MEX3A GRIN3A MEX3B LOC100288893 LOC728705 BCORL1 IDO1 HIST1H4F LINC00643 SLC23A3 ZNF397 PANK1 HERC2P2 MRGPRE AKAP3 FLRT2 SAMD13 A1BG-AS1 E2F8 FZD2 NFE2 EGR1 NTNG1 BCL11B ZNF382 FAM78A BCL11A NR2F2 ATP1A1-AS1 FLI1 SLC6A7 KLHDC8B NOX4 GNE RCOR3 CFTR PTGFR ZBED8 CDCA7 NAPEPLD TPTE2P5 EVPLL LYPD6 IFIT2 IFIT1 INPP5D RASSF4 PP12613 ZNF280D TNFSF10 SERPINH1 HOXC9 BANP CCDC110 DUSP1 NBPF9 NBPF10 LHFPL3 VAV3 SIRT4 MMP12 CLDN10 ID3 GAS1 CEACAM6 KBTBD3 ID2 GLCCI1 TAS2R60 ZNF233 TENM2 CSRNP3 GUCY2F KLK7 XKRX CCR7 ZNF221 IL32 DMRT3 IGIP PRO1804 FOS FMO2 LOC157562 PTH2R P2RY10 HEYL SLURP1 GHRH GDPD1 PNPLA5 B3GNT1 PNPLA3 ZNF692 OR2M2 GRAMD2 HIST2H4B GPRC6A RBBP8NL ZFP14 CUX2 ZSCAN31 SIX3-AS1 GSC KANSL1L GUCY1A3 SLX4IP LMO3 SKIDA1 BTBD8 FLJ13744 DISP1 CXCL10 IFI44L ZNF70 LYG1 RIMBP3 ZSCAN4 PRR15L PDE7A KIAA0408 CD86 MROH2A CSF2 RGS17 LGALS8-AS1 ARMCX1 BEST1 ITPRIPL1 SLC25A42 ZNF546 PLGLB1 SPTSSB LINC00599 TNFRSF10C CACNB2 TLX1 LOC100505940 AMPH LINC00269 LINC01116 LINC01232 NOTCH1 KCNE3 SESN1 SALL2 UBD ZKSCAN3 ZNF404 BMF TGM4 EGFL6 MRGPRX2 NAV1 BMP4 ACTA2 IL7 ITGAD MNX1-AS1 LOC728743 LINC01410 MAST3 ZFP82 PIK3R3 LINC01093 P2RY6 HIST1H1E CA7 HIST1H1C HIST1H1D DACT2 IP6K3 PIANP ATF7IP CCDC178 UGT2B15 SWT1 THAP2 RAD52 EVI2B HIST1H2BF HIST1H2BH ZNF610 HCN3 HIST1H2BO ZNF177 HIST1H2BL CXXC5 SOBP EFS ADAMTS5 KDELC1 CCL4 CEP152 LRIG3 MSMB
SARS perturbation Down Genes airway epithelium (HAE) from GSE47961:GPL6480:1 ENTPD1 LOC100506737 IL1R2 SERPIND1 CACNA2D3 C9ORF47 DKK1 EREG LOC284561 DKK4 MALL CCT6B LOC100507022 LOC100506175 KIAA1217 CPEB2 EID3 MTHFD2 PCDHB1 SPARCL1 VLDLR-AS1 TRIM16L XYLT1 LOC646626 TMEM75 BACH1 BACH2 ITLN1 PARD6B HERC3 WDR72 CHAC1 C10ORF2 KDR EGR3 EGR4 SH2D1B IL36G SNHG7 OVOL1 LOC100507165 SNHG17 FERMT2 FOSL1 LOC154761 EHD4 VNN1 SNHG15 KLHDC8A GJB6 CHST2 EZR APOBEC3A PRR22 WFDC8 COL13A1 ZC3H12A TMEM88 GRPEL2 GJA3 ZC3H12C CD19 CCRN4L HMOX1 SNHG20 ZBED2 SOX9 PDK1 DUSP5 ZNF365 FGFBP1 CENPV EDN2 FGFBP3 TNFRSF12A CHKA IL13 TESC EMP1 PTPRE SLC7A5 MBLAC2 RNF148 SLCO4A1 C4ORF6 MIR17HG PIGA FSHR CLCF1 GARS FJX1 LIMS3 ACHE CSRNP1 GRAMD1B OR10H3 STC1 LOC344887 STC2 NEDD9 SLC7A11 SLC7A1 AREG CTSV KIAA0040 PCSK5 HSD11B2 SEC14L2 PPRC1 C6ORF58 JARID2 ZNF469 LMCD1 GPR115 PAG1 IL34 SPRYD4 EGLN3 ARG2 PRSS38 ZNF674-AS1 TEKT4P2 SERPINB8 F3 CIT SERPINB9 GPR6 STK17A PLEKHO1 PER1 SMOC2 ANGPTL4 PPARG FLJ30064 HBEGF IL17D ERRFI1 NRP2 SLC43A3 FAM57A PTGER4 DIRAS3 PRKAG2 SLC20A1 FAM115C PIGW SLC9C2 PTGS2 AKAP12 MIR22HG XDH SLC17A3 SRSF12 PHLDA1 TFPI2 LMO7 HS3ST2 TMEM133 OLFM4 PSAT1 LINC00925 DOK7 SLCO2A1 LOC100129781 MYADM SLC25A32 ST7-AS1 PNCK DGKE CD83 NRL IL1RAP FRY RELB HOTAIRM1 CTGF LENEP PROKR1 RASD1 SH3TC1 HAS2 LOC100505592 S1PR1 PABPC1L2B PHLDA2 MAP3K8 PPFIA4 KRT6B LINC00479 SMAD3 C11ORF86 MAP2K3 OPALIN NEK6 TTC32 LINC00152 EPHX4 PPTC7 KIF23 MAFF RGCC CDH12 HPSE CDC42EP2 LOC388242 BIRC3 C11ORF96 IRS2 BZRAP1-AS1 FAM107A PLAT ETS1 CORO1C TPO RGS2 SESN2 PMAIP1 SEMA7A IL13RA2 CAV2 LANCL2 ASNS OSGIN1 LOC145837 HPDL LOC284242 CLK1 TMEM213 CYP26A1 ARL4C LPIN1 BMP2 LCP1 CHI3L1 CXCL8 KHDRBS2 BCAR3 NNMT AGPAT9 BCL2A1 ONECUT1 OR11H12 ASH1L-AS1 HUS1B LMOD1 SLC3A2 CYR61 PDLIM2 CALB1 HRH1 PDLIM3 ERBB4 NRIP1 DENND3 PHACTR3 CNGA3 RALGDS LINC00312 SMIM10 LINC00313 RBM12 LONRF1 LINC00472 MED14OS VCX3A DAPK2 SMOX FEM1C PLAUR ATP2B1 KLF4 LEMD1 GREM2 PTHLH SLC4A9 EVI2A CCAT1 SYT12 LOC100506271 DDIT3 LINC00900 TRIB3 TRIB1 RTP5 KRT80 SOWAHC TM2D2 FHL2 DDX21 RND1 CBS RBM3 ADAMTS1 MIR4435-1HG CTAG1A NT5DC3 UPP1 INSL4 SLC25A25
SARS perturbation Up Genes airway epithelium (HAE) from GSE47961:GPL6480:2 MX1 CADM3 GLYCTK RSAD2 MX2 TOMM20L PNMA3 UPB1 CFC1 IFI27 SPARCL1 C2ORF72 ATF3 IFITM1 ZAN SLC5A2 SNX31 LOC100129935 MLLT4-AS1 IFNL1 HERC5 IFNL3 IFNL2 SV2B SAMD10 NXNL1 EPSTI1 EGR1 BATF2 EGR2 EGR3 EGR4 GADD45B PLA2G4F TPT1P8 PLA2G4C PAPPA NR0B2 C8ORF4 KLF15 OVOL1 TEX19 IFI44 ERVH-4 APOBEC3A PAEP WFDC9 GLDC NPFFR2 HEPACAM KRTAP10-10 HHIP TWIST1 IFIT2 IFIT1 SLC6A4 IFIT3 SOX17 KCNN1 IER2 IL12B DIRC1 JUNB LINC00652 ALX1 IER3 GPR17 DUSP5 JUN DUSP1 DUSP2 OR1N2 FRG2 OR4A15 OR3A3 CSRNP1 MOGAT1 PTH1R SERPINA9 GPT AANAT CCR8 IL33 FOXB1 ARG2 FOS SCTR FLJ31713 SLURP1 FOSB PER1 KCNQ4 PNPLA5 APBA1 PLCB2 RGR NPB IFNA6 IL20 DEFB129 SPANXA2-OT1 AOC4P WAS GLRA4 ANKRD30BP2 MRC1 GPA33 IFNB1 THSD7A FADS2 CD55 CHRNB3 ZBP1 NKX6-3 SCARA5 KRTAP13-4 WNT5A KRTAP4-6 GOLGA6L2 TYROBP LOC157740 EDAR OLFM1 CXCL10 CXCL11 IFI44L FETUB DPP10-AS1 CD84 CD83 LSMEM2 IFI6 KIAA2022 LAMP5 RASD1 CDH5 TCEAL7 ZFP36 LAMP3 XRCC6P5 PRNT DDX58 KRTAP5-8 ISG15 GFAP FRMD1 UPK3A HIST2H2BF GEM NR4A3 RCAN2 ZFP42 FGF19 CDH16 XAF1 LOC100506113 VIL1 LOC100507205 MGC2889 C11ORF96 TRAPPC3L OR10J5 CSH1 LOC101929122 BHLHE22 LOC286382 NR4A1 DDX60 RGS1 PMAIP1 PIM3 ZNF385B IL13RA2 HSPA6 RFPL1 TMEM255B SSTR2 OAS1 TBC1D3P5 SSTR3 DNM1 IL6 OAS2 RTN4RL2 OAS3 PARVG OR10A5 CXCL8 KHDRBS2 TNFAIP6 TNFAIP3 ACSM2B CXCL2 ST8SIA6-AS1 LINC01093 CXCL3 IRAK2 LINC00319 NPBWR1 CPXM1 DRD3 LOC100131840 GALNT9 PIANP CCDC178 ALOX5AP HTR3C LOC100128239 AIM2 P2RX5 KLF6 S100Z MAB21L2 DDIT3 PTX3 INSM2 ANAPC2 MYLK2 HLF SLC24A2 ZBTB47 DDX60L SLC5A10 ARHGDIG USP18 TNFSF13B OASL CYTH4 SLITRK1 PIP5K1P1 CTAG1A SLITRK5 RESP18 OR13D1 FCGR1B UGT1A8
SARS perturbation Down Genes airway epithelium (HAE) from GSE47961:GPL6480:2 SRRM4 CACNA2D2 SPATA8-AS1 CCK COL1A2 CD2 COL1A1 FLJ13224 LOC100130700 CYP2C8 MYL2 PCDHB1 VIM FAR2 KIF20A MYL9 ASTN1 ANKLE1 VIT KRT16P2 FGL1 TAGLN COL12A1 SERPINE2 DLL3 MAGEA8 DPYSL3 FLRT2 SPOCK1 GTSE1 LOC101060157 LINC00633 ABCA1 AFAP1L2 MCAM NEXN-AS1 IGF2 SLC16A10 IGFL2 FLI1 LOC154761 GJB6 PADI4 NOX4 SPARC PCDH10 SLC6A2 MYLK CD1A SOX3 LIPG T LGALS1 ARSI APOE TRPM5 OR5F1 FN1 A1CF MMP10 MMP13 CRLF1 MMP12 TF FAM101B MBLAC2 COL3A1 CDC20B PTPRB KRT17 TMSB15B KRT16 RBMY1B SERPINA3 SKA1 TENM2 C5ORF46 LRRC39 SDC3 GPR21 KLK5 BRCA2 GJC3 MYCT1 MAP2 DNAJC5G ANKRD1 STRA6 CEP55 GPR115 HBZ CAMP DLGAP5 HLA-DQA1 PRY2 C11ORF44 SLC32A1 PMCHL1 STAT4 SLC39A12 ADAM12 SORCS3-AS1 DEFB106B ANO1 ADAM19 FABP5 COL4A2 C11ORF39 LPPR3 TRIP13 ANGPTL5 ATP6V0D2 LOC100506674 LOC100506675 IVL SRPX IGHM ECM1 LRRC17 AMIGO2 TCF23 LOC643733 STON1 LYZL1 GDPD4 ODF3L1 DCST1 MIR503HG NUDT10 AKAP12 OLFML3 CXCR3 ENPP2 SLC17A9 KRTAP2-3 FILIP1L MLIP CD70 LOC100131195 ARHGEF39 LOC102467073 TMEM130 SPINK1 FLJ13744 OR2T5 SPOCD1 CXCL13 OLFM4 LYG2 COL5A2 DOK5 FAP BUB1B DPEP2 CSPG4 ROR1 DSC2 CSPG4P5 KANK4 RHCG CSF2 OR6K2 RASL11B CTNND2 OTP CXCL14 LOXL2 JAKMIP3 KRT6A COMP CDH6 TUBB3 SPP2 CCRL2 ZIM2 MSX2 SHOX PAMR1 KRT6C CPA3 SLC30A3 ODF3 TNFRSF10D KIF18B KRT38 CDH13 ECRP LINC01356 BCAT1 AMPH LINC01116 PMCH BZRAP1-AS1 CT45A5 MIATNB FGF1 TRBV5-4 FGF5 ACTG2 SCGN CNN1 AKR7A3 CALD1 OR6Y1 PMEPA1 NPPB LOC439938 UGT3A1 SEMA7A SLC38A3 PABPC4L MMP1 MMP2 MMP3 MMP9 BMP6 VCAN ITGAD COL7A1 PCDHGB1 SPEM1 SLC26A7 NNMT OR11H12 HSPB3 LAMC2 TREM1 PLTP UNC80 RDH12 ORC1 KIAA1524 OR2W1 PRPH LINC00311 KRTAP11-1 CCDC184 CSTL1 NTRK1 C4ORF26 NGB KIAA1549L LOC101927770 ANXA10 SHCBP1 TM6SF1 SLC4A9 LTA LINC00900 FOLR4 MYO1G SLC24A4 ITGB6 LAMA3 ITGB3 ITGAL THBS2 IL1RL1 ADAMTS5 STK32A OR1S2 CECR6 SIX3 SOST
SARS perturbation Up Genes airway epithelium (HAE) from GSE47961:GPL6480:3 OR8H1 SP110 MX1 GLYCTK RSAD2 MX2 TOMM20L EREG DKK4 LOC100506175 CPEB2 IFI27 TRIM14 TEK CLPSL2 LINC00641 IDO1 ATF3 ADAMDEC1 SPRR3 IFITM2 IFITM3 SAMD9 IFITM1 LOC284454 MT1JP UBE2L6 BACH2 SLED1 HERC6 IFNL1 HERC5 MAGEA8 IFNL3 IFNL2 SAMD10 GBP1 GBP5 GBP4 EPSTI1 THEG5 EGR1 BATF2 EGR2 EGR3 EGR4 STAC GADD45B PLA2G4F TPT1P8 PLA2G4C KRTAP9-2 NR1D1 PAPPA C8ORF4 OVOL1 TEX19 IFI44 PARP14 ERVH-4 PARP12 PLSCR1 NOSTRIN SPDYA LINC00307 APOBEC3A PAEP APOBEC3B WFDC9 IL1RN ACTL7A NPFFR2 HHIP IFI35 TMEM95 IFIT5 LINC01191 KLHDC7B IFIT2 IFIT1 SLC6A4 IFIT3 IL4I1 KCNN1 IER2 IL12B HIST1H3J JUNB LINC00652 IER3 GPR17 DUSP5 DUSP6 EDN1 JUN DUSP1 OR52A1 DUSP2 IFITM4P TESC HBA2 A1CF LOC400707 BST2 THEMIS2 SLCO4A1 POM121L12 CSRNP1 DEFB105B GYPC KRT24 GRIK3 SOCS3 AANAT SOCS1 CLEC7A SNTG2 CTLA4 FCER1A FAM43B TMED6 HSD11B1 SPRR2E MAP4K1 STAT1 FAM46A FOS SCTR ACTL8 PARP9 FOSB PNPLA5 ERVV-1 TRIML2 RGR IL20 IL27 DPYS TMEM140 IFIH1 GPRC6A GLRA4 UCN3 IFNB1 FADS2 CD55 CHRNB3 ZBP1 TOR1B NKX6-3 F11 HRASLS2 KRTAP4-6 TAP1 EDAR OLFM1 CXCL10 CXCL11 IFI44L WDFY4 ADAM8 ZNF676 FAM71F1 CHRNA2 DPP10-AS1 CD84 PLVAP CSF3 CD83 C6ORF10 IFI6 LOC285389 SAMD9L CDH9 H1FNT LAMP5 RASD1 ZFP36 NLRP8 PCAT7 LAMP3 HAS1 TCEAL2 TTTY6 ADORA3 OR2B6 CARD11 XRCC6P5 PRNT SLC15A3 DDX58 FBXO39 GPR78 NKG7 ISG15 GFAP FRMD1 SCRT2 FRMD3 GEM MAFF ISG20 NAT8 NT5C3A XAF1 LOC100506113 CDH19 CREB5 MGC2889 C11ORF96 NTS NR4A1 DDX60 TGM1 RGS1 TNFRSF9 PMAIP1 PIM3 RGS8 SSX2 HMGCS2 HSPA6 EIF2AK2 SSTR2 OAS1 SYNGR4 SSTR3 ETV7 ARL4D CYP26A1 IL6 OAS2 IRF4 OAS3 TNIP3 UBQLNL PARVG IRF9 IRF7 CXCL8 GAL3ST1 CXCL9 GMPR TNFAIP6 TNFAIP3 CXCL2 LINC01093 NLRC5 CSAG1 CXCL3 LOC101929147 CYR61 P2RY8 TMEM204 LINC00319 PDE4B LINC01405 DRD3 LOC100131840 RBM11 ALOX5AP ZBTB32 AIM2 HSH2D KLF6 MAB21L2 PTX3 INSM2 PIK3AP1 RTP4 ZBTB47 TREH PKD1L2 DDX60L PPM1K SLC5A10 BARX1 USP18 TNFSF13B OASL PIP5K1P1 DHX58 TAGAP CCL5 ADAMTS9 FCGR1B
SARS perturbation Down Genes airway epithelium (HAE) from GSE47961:GPL6480:3 HPX-2 ISLR2 C9ORF47 CCK MAPK8IP3 DKK2 TAAR2 VIM CD207 MYL9 ASTN1 OR4C15 OR5A1 RAMP3 PRSS1 TAGLN FRMPD2 IL2RG FAM169B LOC100129935 PRAP1 VPREB1 DPYSL3 FLRT2 SPOCK1 CEP83-AS1 MS4A12 OR2A25 SNCB CHIA AFAP1L2 LMAN1L IGFL2 OR5P2 FLI1 OR52K2 ST3GAL6-AS1 NOX4 SCN2A SPARC NPY6R OXTR HHLA1 SLC45A2 TXK NR2E1 SLC6A2 ABO ADCYAP1R1 GATA2 MYLK OR8U1 TRPM3 NKAIN4 PLAC1 ARSI TAS2R50 ZNF503-AS1 HAGLR AMPD1 FN1 MMP10 MMP12 TF FAM101B COL3A1 PTPRB GIPC3 FLJ34521 OR4A15 VN1R5 GPRC5D CRLF2 WFIKKN2 KLK6 STC1 PTH1R KRT20 GJC3 CSRP3 LOC644135 SLC18A3 ANKRD7 HLA-DQA1 MME EMR1 STAT4 DMRT1 MRGPRG-AS1 SORCS3-AS1 LAPTM5 BGN FMO3 LOC101929550 KIR3DL3 POU5F2 NLRP14 COL4A2 MAP1B FLJ25715 RAMP1 ATP6V0D2 LPPR2 IFNA6 ECM1 LRRC17 ASIP GLI1 EPPIN-WFDC6 CT55 CHRND SIX3-AS1 LOC100286906 THSD7B CSMD2 SLC17A4 LOC100131195 LOC284600 MPEG1 TMEM130 ATP1B2 KIAA1614 CXCL13 COL5A2 LINC00925 LOC100129781 ZSCAN4 CSPG4 ZSCAN1 ROR1 KANK4 CHRNA6 LSMEM2 RASL11B KLHL33 CXCL14 LOXL2 HPGDS COMP CDH6 BANF1 NLRP4 PAMR1 TECTA LOC643085 PSKH2 KRTAP12-2 CARTPT DUSP26 KIAA1755 LOC100287869 LINC01116 PMCH OR52B2 CES5A CSF2RB FGF5 KLHL10 MMP24 FAM198A RGS4 FDCSP ZNF385B KL GLYATL1 MMP2 MMP9 BMP6 VCAN MYO3A ADORA2A PCDHGB2 C21ORF128 SLC26A4 TAS2R9 ONECUT1 CELF5 HSPB3 CLCNKA LOC100128922 CGB1 FBXO40 ADAMTS15 UNC80 OR2W1 XIRP2 SCN3A FAM27L NTRK1 ANXA13 KIAA1549L LOC100128239 PGM5-AS1 KRT74 TBX18 MIR181A2HG C15ORF27 CCAT1 EVI2B SYT10 PI16 SPRY4 PI15 BPI RSPH1 PIWIL2 ITGB3 PIK3C2G ADAMTS5 STK32A LOC101929172 INSL4 INSL5 LINC00578
SARS perturbation Up Genes airway epithelium (HAE) from GSE47961:GPL6480:4 MX1 GLYCTK MX2 CAPN14 SLC5A8 ABCA12 TNFSF4 SPARCL1 IDO1 ATF3 SAMD9 C4BPB LOC284454 BACH2 TMEM72 SPDEF IFNL1 IFNL3 IFNL2 GBP1 ASPDH HES1 NXNL1 GBP5 GBP4 ELANE EPSTI1 BATF2 WNT10B FZD8 OR2J2 ERVH-4 ACE2 FOSL1 PLSCR1 SERPING1 FTCDNL1 SLC6A4 IL4I1 RNF213 ZC3H12A OBP2B GALR2 IER2 HESX1 JUNB CGA IER3 DUSP5 FGFBP1 DUSP6 PNPT1 JUN DUSP1 DUSP2 CCL20 TESC TACR3 USP30-AS1 POU6F2 APBB1IP SLCO4A1 BHLHE40 HRC GPR21 ADM SERPINA9 AREG EHMT1-IT1 HSD11B1 STAT1 STAT2 EMR1 GPR3 FOS GPR31 BGN SCTR FOSB AADAC ANGPTL4 HBEGF RGR PGLYRP3 ADAM21 TMEM140 JPH2 PRAM1 PTGS2 IFIH1 GLRA4 ANKRD30BP2 GSC FADS2 TOR1B LAG3 KRTAP4-6 TAP1 EDAR OLFM1 CXCL10 CXCL11 OR4X2 LIX1 LY6E PLXNB3 NCF1 ADAM8 CSF3 TNF BEST1 LAMP5 ZFP36 PIPOX LAMP3 LINC00599 SAA3P TRPC7 SLC15A3 FBXO39 FANCA MAFF NT5C3A LINC00029 CDC42EP2 XAF1 IFNA10 LINC00269 C11ORF96 CD274 FGF2 WISP2 TNFRSF8 UGT3A2 C1QTNF1 LRRC4B DTX3L EIF2AK2 ARL4D UBQLNL ITGA9 GAL3ST1 COX4I2 GMPR HTR2B NLRC5 CYR61 C15ORF48 LINC00319 DRD3 MYO16 HTR3E LOC100419583 GZMH KLF4 KLF6 INSM2 PIK3AP1 TRIM31 MIR155HG C1S ZBTB47 PPM1J DDX60L PPM1K ITGAM HDAC9 TNFSF13B SLC25A28 DHX58 TAGAP CCL5 TRIM25 TRIM21 INSL4 TRIM22 LINC01304 SP110 RSAD2 PNMA3 MYO7B LOC100127886 EREG PML MALL FLJ13224 LAP3 IFI27 TRIM14 SIK1 SPRR3 IFITM2 RFPL3S IFITM3 IFITM1 UBE2L6 SLED1 HERC6 HERC5 EGR1 EGR2 EGR3 EGR4 GADD45B PLA2G4F SLC6A17 TNFSF14 SLC6A14 IL36G C8ORF4 IFI44 PARP14 KRTAP9-9 PARP12 FCHSD1 RNF144A SPDYA SPRR1A SPRR1B APOBEC3A PAEP APOBEC3B WFDC9 IL1RN NPFFR2 SLC22A6 SPG20OS LOC284912 HHIP IFI35 IFIT5 LINC01191 KLHDC7B IFIT2 LRRC3DN IFIT1 IFIT3 IL12B LGALS9 SERPINB9P1 OR8D1 EDN1 EDN2 WARS NCOA7 IFITM4P LIF TLR2 BST2 CLDN10 THEMIS2 CTRC OR3A3 CSRNP1 PTPRR MOGAT1 STC1 GRIK5 KRT24 PTPRH KLK7 SOCS3 DUOX2 AANAT SOCS1 KRT27 FCER1A CD38 CCR8 SPRR2C SPRR2D IL33 FAM46A ACTL9 PARP9 B3GNT6 SAA2 PNPLA5 LPPR4 LY6G5B SAA1 TRIML2 IL17C IFNA5 IL20 C1QA STAB1 IFNB1 DKFZP434I0714 CD55 CHRNB3 ZBP1 GDF15 HBE1 HRASLS2 LGALS9C IFI44L ZNFX1 CD300E CD68 TYMP CD84 CD80 PRDM1 C6ORF10 IFI6 SAMD9L SDR9C7 KRT6A RASD1 DUOXA2 LOC100505592 CCRL2 MSX2 OR2B6 KRT6B PRNT DDX58 WSCD2 TDRD7 ISG15 GEM ISG20 NR4A2 CD8A LINC00707 LOC100506113 CREB5 WNT2B RASGRP3 NR4A1 DDX60 TGM1 RGS1 MUC13 PMAIP1 MLKL HSPA6 RFPL1 CADPS ETV3 SSTR2 HUNK OAS1 ETV7 LOC100506253 IL6 OAS2 OAS3 TNIP3 PARVG IRF9 IRF7 MYH7 CXCL8 LOC440792 CXCL9 BCL2A1 TNFAIP6 TNFAIP3 CXCL2 LINC01093 CXCL1 ADAR CXCL3 CGB1 HK3 CXCL6 TMEM204 NPBWR2 PDE4B CYTIP LONRF3 RBM11 ALOX5AP AIM2 HSH2D C19ORF66 CERCAM S100P PTX3 RTP4 USP18 SLC4A5 OASL IL1RL1 UBE2DNL SCN5A
SARS perturbation Down Genes airway epithelium (HAE) from GSE47961:GPL6480:4 LINC01101 LRRC63 CCK GOLGA6L2 TMEM130 COL1A2 CCDC81 LGSN LRFN1 VIM OR4C15 KANK4 FAM71F1 TAGLN CWH43 FAM169B CXCL14 COMP CDH6 FLRT2 SPOCK1 RGS22 PAMR1 HOXA7 NUMBL PSKH2 THEG5 CNTD1 AFAP1L2 TRPC2 ODF4 ABHD12B IGFL2 FLJ34503 C1QL2 TP73 FANCD2OS PLSCR2 GPR182 NOX4 LINC01116 LOC100507205 HEPACAM PMCH FGF1 MYLK ADH6 OR8U1 ZFP57 BRIP1 CNN1 RGS4 C1QTNF2 TPO FAM65C APOE SLC38A3 IL13RA2 LOC101928327 ECT2L ZNF503-AS1 KCNJ13 MMP3 FN1 GPR98 TACR1 MMP10 MMP12 FAM101B CATSPERD COL3A1 TMEM214 GIPC2 OR4A15 SPRR2G HSPB3 LAMC3 FBXO40 PDLIM3 SLC22A16 B4GALNT1 TAC1 CD52 LGI4 PMCHL1 FMO1 C4ORF26 LAPTM5 FMO3 C1ORF87 ADAM19 LOC100130920 NOVA1 MAP1B PMFBP1 LTA LINC00900 TNP2 CTXN2 LOC143286 RTP5 SEMA3E DPYS LRRC17 FHL1 CRX STON1 THBS2 TSPAN11 ADAMTS5 NUDT10 CHN2
SARS perturbation Up Genes airway epithelium (HAE) from GSE47961:GPL6480:5 MX1 ESX1 MX2 SOX10 PSMB9 LOC284561 DKK4 CAPN14 CD5 LOC100507140 GAGE7 CEP85 IDO1 HCP5 ATF3 SAMD9 LOC149703 FLJ35700 C14ORF144 BACH2 SPDEF IFNL1 PRTG IFNL3 IFNL2 MS4A15 GBP1 APOL1 GBP5 GBP4 EPSTI1 BATF2 CUBN NR1D1 TEX19 RPL3L ERVH-4 ACE2 PLSCR2 PLSCR1 SLCO5A1 SERPING1 HPD CFB PRR21 GATA2 SLC6A4 IL4I1 GPR173 GALR2 IER2 JUNB CGA IER3 PCDHA8 GPR17 DUSP5 FCRL2 PNPT1 GABRA1 JUN DUSP1 DUSP2 TACR3 USP30-AS1 APBB1IP GJD2 PBOV1 SLCO4A1 LCE4A HAP1 FXYD7 IL18BP GABRB2 HSD11B1 SERPINB2 STAT1 STAT2 FOS HSFX1 LCE2B FOSB ANGPTL4 OR10G8 RGR ASIP LOC643733 ADAM21 PYGM HOXD13 TMEM140 LOC728690 IFIH1 PSMB8 GLRA4 SLC17A3 DIO3OS FADS2 LINC01101 TOR1B LAG3 F11 KRTAP4-6 TAP1 GPR52 GPR50 EDAR OLFM1 CXCL10 CXCL11 CXCL12 CXCL13 ADAM6 ADAM8 CSF3 GPR63 CDH9 BEST1 BEST2 LAMP5 ZFP36 LAMP3 NPTX2 SLC15A3 FBXO39 FANCA ESPNL MAFF NT5C3A IL1RAPL2 LINC00029 XAF1 PGPEP1L C8ORF12 C11ORF96 CD274 FASLG AMDHD1 LOC100131662 LRRC4B PLXNA4 PDCD4-AS1 HMGCS2 DTX3L HTR1D EIF2AK2 GKN1 FCGR2A LOC645752 LCP2 OR52K3P OR10A2 COL14A1 COX4I2 GMPR PTPN22 HTR2B ADRA1B C15ORF48 P2RY8 P2RY6 LINC00319 OR2W1 XIRP2 DRD3 LOC100131840 PRKG1 PPP1R14A MYO16 SLC13A5 LOC100419583 HAND1 PI15 INSM2 PIK3AP1 TRIM31 ZBTB47 SEMA3B DDX60L IGHV3-48 PPM1K HDAC9 TNFSF13B SLC25A28 ZNRF4 C1ORF127 DHX58 TAGAP CCL5 TRIM21 TRIM22 CACNG5 EPHA8 SP110 ARL14 RSAD2 EREG PML HIST1H4A LAP3 IFI27 PSG7 TRIM14 HCG26 ALPK3 TLN1 WFDC11 SPRR3 IFITM2 RFPL3S IFITM3 IFITM1 AKAP7 IL2RG UBE2L6 LOC100129935 HERC6 HERC5 SRD5A3-AS1 EGR1 EGR4 STAC PLA2G4F MAGEC1 PLA2G4C KRTAP9-2 TNFSF14 SLC6A14 PAPPA HLA-A C8ORF4 HLA-B HLA-H IFI44 HLA-E PARP14 HLA-F PARP12 VNN3 BPIFB4 SPDYA CCSER1 SPRR1B APOBEC3A PAEP APOBEC3B WFDC9 LST1 IL1RN NPFFR2 SLC22A6 HHIP TXK IFI35 IFIT5 LINC01191 KLHDC7B C10ORF25 IFIT2 LRRC3DN IFI30 IFIT1 MBD3L1 ICAM2 AARD IFIT3 ART3 IL12B LGALS9 SERPINB9P1 OR8D1 EDN1 EDN2 WARS SLC10A1 NCOA7 CCDC116 IFITM4P NMI AMPD1 LIF RENBP FAM197Y2 NCR2 BST2 CLDN10 CEACAM1 THEMIS2 CLDN19 OR3A3 CSRNP1 PTPRR SECTM1 KRT24 SLC35F1 PTPRH KLK7 DUOX2 LOC644135 CD38 CCR8 LOC400043 SPRR2C SPRR2D ANKRD7 FAM46A MN1 PARP9 LOC100130920 KCNQ4 SAA2 PNPLA5 LPPR4 SAA1 TRIML2 LOC100507521 IFNA5 IL20 CT55 ZDHHC19 STAB2 IFNB1 THSD7A THSD7B CD55 LAIR1 CHRNB3 ZBP1 GDF15 HRASLS2 POU4F2 HS3ST2 IFI44L NUPR1 CD300E APLNR UCA1 CD68 PNCK TYMP CD84 IFI6 SAMD9L SDR9C7 DRP2 KRT6A SCUBE3 RASD1 LOC100505474 SH3TC2 DUOXA2 TTTY6 CCRL2 OR2B6 MEIOB SASH3 HIST1H2AC KRT6B KRTAP12-2 PRNT DDX58 KRT35 TDRD7 ISG15 C2ORF16 INHBE GEM ISG20 CASQ1 CREB5 MIDN WNT2B RASGRP3 NR4A1 RASGRP4 DDX60 FAM198A RGS1 GOLGA6L6 CACNA1S MUC13 PMAIP1 MLKL MAS1L OR51G1 HSPA6 HUNK OAS1 PRODH2 UPK1A ETV7 C7ORF61 IL6 OAS2 OAS3 PARVG IRF9 IRF7 CXCL9 TNFAIP6 MEGF10 TNFAIP3 HMGB4 CXCL2 LINC01093 CXCL3 HK3 THPO LOC729164 PDE4B WNT1 RBM11 CCDC179 OR1D5 PCDHGC5 PCDHGC4 PLAUR AIM2 HSH2D S100Z C19ORF66 DCT DDIT3 PTX3 TRIB3 RTP4 USP18 OASL IL1RL1 GRM8 SIX3
SARS perturbation Down Genes airway epithelium (HAE) from GSE47961:GPL6480:5 SBSPON TGFB3 DEFA3 LOC284600 LOC643802 FAM101B MBLAC2 OLFM4 MYO3A SP5 PCDHGB1 LOC100132363 ZNF479 AMER2 FGL1 FBF1 CBWD6 MOGAT1 OTP GS1-24F4.2 GSN-AS1 FLJ38576 GOLGA8EP NWD2 SEC14L5 DDI2 TCEAL2 NLRP4 MSX1 LOC100132014 CD300LG THEG5 C8ORF59 XRCC6P5 CR2 AQP12B TPT1P8 LOC101929550 NDUFAF4P1 FRMD1 OR52K2 C1ORF145 GOLGA6C GPR182 ILDR1 LOC650157 LOC100507646 KCNA10 LTA LTF NACAP1 LOC100287869 LINC01356 CCDC62 WFDC8 OR10J3 ATP8A2 DPYS PCDH10 LOC100132790 CDC14A HSP90AB6P GLI1 MIR503HG ESM1 CKMT2 CTNNA2 ZNF208 HIST1H3J
SARS perturbation Up Genes airway epithelium (HAE) from GSE47961:GPL6480:6 MX1 MX2 SPATA8-AS1 PSMB9 GRIN3A CAPN14 IDO1 HCP5 ATF3 SAMD9 TMEM72 GNG2 IFNL1 IFNL3 IFNL2 SV2C GBP1 NXNL1 GBP5 EPSTI1 SMCP NFE2 BATF2 NFE4 COL25A1 LOC253805 KIAA1244 ERVH-4 ACE2 FOSL1 PLSCR1 SERPING1 PADI4 EXD1 CFB STMN4 RXFP4 SLC6A5 RNF213 ZC3H12A OBP2B IER2 SMCO3 TMEM200A JUNB RHBDL3 IER3 TMC2 DUSP5 FGFBP1 DUSP6 PNPT1 JUN DUSP1 USP30-AS1 TAL1 BHLHE40 ADM SERPINA9 LRRC31 C12ORF36 SNTG2 HSD11B1 STAT1 ADAM12 FOS FOSB ANGPTL4 ERVV-1 HBEGF LILRP2 RGR ZNF454 SFTA2 F13A1 TMEM140 OR2M2 SLC8A2 PRAM1 PTGS2 IFIH1 GPRC6A ANKRD30BP2 OLFML3 PRAMEF1 GSC SLC17A9 PGLYRP2 FADS2 TOR1B LAG3 TAP1 OLFM1 CXCL10 CXCL11 CXCL13 ADAM7 LY6E PTPN7 S100A5 MROH2A CSF3R CSF3 BEST1 LENEP ZFP36 LAMP3 BCL2L15 LINC00599 SLC15A3 ODF3 FBXO39 SCP2D1 MAFF FLJ44715 NT5C3A ZFP42 LCN1 XAF1 ANKRD34A LINC00269 C11ORF96 FAM228A WISP2 TNFRSF8 SH2D6 REXO1 DTX3L EIF2AK2 ARL4D CATSPERB SLC26A4 GAL3ST1 BMP10 GMPR CELF5 PTPN22 CLCNKB HTR2B CYR61 C15ORF48 MDK P2RY6 ACP5 TRIM49 CR1 PIANP KCNH4 IRX6 KCNK16 HTR3E LOC100419583 LEMD1 CECR1 EVI2B KLF6 POLR1A ASPG INSM2 C1R C1S DDX60L PPM1K TNFSF13B DHX58 TAGAP TRIM21 TRIM22 ADAMTS8 OR8H1 SP110 RSAD2 ENTPD8 MMD2 LOC100127886 EREG LOC100130700 LAP3 IFI27 TRIM14 CD207 HCG26 TRIM15 SPRR3 IFITM2 IFITM3 IFITM1 IL21R UBE2L6 SLED1 LOC100129935 HERC6 HERC5 C4B NHLH2 CPNE4 LOC100506725 LOC101060157 EGR1 EGR2 EGR3 HLA-J GADD45B PLA2G4F PPBP SLC6A14 SLC6A13 HLA-A C8ORF4 HLA-B HLA-G HLA-H IFI44 HLA-E PARP14 HLA-F PARP12 VNN3 SPDYA CCSER1 SPRR1B APOBEC3A PAEP NPFFR2 PDE1B HHIP IFI35 IFIT5 KLHDC7B IFIT2 IFIT1 IFIT3 DMBX1 ARSI LGALS9 SERPINB9P1 EDN1 LINC00176 EDN2 ZNF503-AS1 LINC01260 NCOA7 CCDC116 IFITM4P NMI TLR2 BST2 TF CLDN10 THEMIS2 FRG2 FAM20A MGC32805 FATE1 CSRNP1 REG3A PTPRR ACY3 KRT24 PTPRH SOCS3 DUOX2 GABRR1 NEU2 CD38 CCR8 SPRR2D PAG1 FAM46A GFRA4 DEFB106B PARP9 FAM189A1 B3GNT6 PER1 SAA2 PNPLA5 SAA1 DEFB123 FERD3L CUX2 STAB1 DMBT1 IFNB1 CD55 CORIN RARRES1 CHRNB3 ZBP1 GDF15 HRASLS2 LAX1 IFI44L PCP4 UCA1 CD68 PNCK TYMP CD84 OR6K2 IFI6 SAMD9L NKD1 KIF5A RASD1 SH3TC2 LOC100505592 KRT6B TMPRSS11B KRTAP12-1 PRNT DDX58 ISG15 SMAD6 ISG20 LOX TLX1 LINC00942 NMUR2 PRTN3 LOC100506113 MFGE8 AMPH CDH19 C17ORF99 KLHL14 RASGRP3 NR4A1 DDX60 TGM1 CALHM1 RGS1 MUC13 KLRC1 TGM4 HS3ST3B1 HSPA6 MMP1 MMP3 OR2H2 OAS1 ETV7 IL6 OAS2 OAS3 IRF9 IRF7 CHI3L1 MYH7 MAST1 CXCL8 CXCL9 NRXN2 CXCL2 LINC01093 CXCL1 ELAVL2 CXCL3 CA1 LCMT1-AS2 OR51E2 MUC5B OR1D2 OR2F1 LGI3 ALOX5AP KRT76 KRT74 GREM2 PTHLH AIM2 HSH2D S100Z C19ORF66 DDIT4 TBX10 S100P MASP2 RTP4 MSMO1 DDN SLC4A4 USP18 ADD2 OASL IL1RL1
SARS perturbation Down Genes airway epithelium (HAE) from GSE47961:GPL6480:6 F10 LRRC63 FLJ35934 GPR52 OTOP3 CD5 IL31RA PSG7 IGKV1D-8 CNIH3 RPL23AP32 VIT FTHL17 CHRM5 C3AR1 PRUNE2 OTP GS1-24F4.2 LOC729080 SDR9C7 MLLT4-AS1 C1ORF229 OSER1-AS1 SLC39A5 KCNH2 ACBD5 FAM26E TPT1P8 MAFG-AS1 EVX1 FRMD1 C1QL2 RPS10P7 PLSCR2 GOLGA6C MOP-1 BPIFB4 PFN1P2 LOC100505940 FTCDNL1 KCNA10 IFNA10 LST1 ANP32A-IT1 PMCH LOC100131262 CACNA1E LPO LOC142937 HOXB13 ELFN1 CRHR2 FAM198A PRKACG TPO LOC643387 NPPB FFAR4 HIST1H3J TAS2R50 C5ORF58 CADPS PAX6 ELSPBP1 CRYGD GJD3 GH2 COL3A1 IRF4 KIAA1257 MYO3A FLJ34521 PABPC3 ZNF479 GGNBP1 KCNQ1DN FPR2 LMOD1 FBXO40 P2RY8 PDLIM3 LOC644135 CCDC34 WDR17 C8ORF59 FOXB1 NTRK1 DMRT1 FMO3 HTR3C KIR3DL3 PGM5-AS1 SLURP1 CSNK1A1L LOC100130920 EVI2A MAB21L2 LOC650157 NEUROG1 TNP2 NACAP1 LCT LOC100132147 RTP5 FAM57B FCAR NUDT12 ADAMTS5 UBE2DNL RNF113B C1ORF127 SPDYE1 SOST SNORA78
Up-regulated genes from COVID-19 infected bronchoalveolar lavage from patients CADM2 WDPCP DNM1P41 TEX35 PLEKHA5 SHISA9 AIG1 LPAR6 LACC1 LOC112268387 KLRD1 ELOA3C ERVW-1 ELOA3D LOC101930047 ASTN2 FRK CHRM3 CD82 AP5Z1 ATP23 AKIP1 FBLN1 LOC112268395 TPM1 CHP2 ZNF426 NXNL2 ZNF665 ACBD7 TBCCD1 NFE4 SLC38A1 DTNB CASR DENND2A C12ORF50 IGFL4 LOC107987394 ACADSB ESR1 FAM90A1 LOC112268284 ANKRD18A GEMIN8 LOC105371063 APOBEC3A CES3 EXD1 C21ORF62 TRAPPC3L EPHA10 PCDH11Y DCUN1D2 AK3 FBXO27 DUX4 ADH4 BRIP1 CCDC92 LOC105372269 ZKSCAN3 SRD5A1 PCDHA4 DYNAP ABCC9 MRGPRX3 KCNJ15 OR1F1 IFNLR1 LOC107987372 ZNF34 SYN3 SCNM1 TMEM212 ALDH6A1 DAB1 C17ORF113 KIAA1257 CENPK DMC1 LOC107987377 ZNF875 MCFD2 SKA1 FBLIM1 LRRK1 ZNF471 INTU GTDC1 RPAP2 HAPLN4 TOR1AIP2 C12ORF45 NNT LOC105374103 CFAP298 TBXA2R MYO6 ORC4 SMYD3 ACP6 RDH16 PNPO TIGD1 LOC112267959 RNLS NEGR1 GSTO2 SCD5 STXBP5L PPHLN1 USP17L11 WTIP P2RY10 POU5F1 COX6B2 TBX18 SOD2 MYORG NUDT8 HNRNPUL1 ABCB11 MAB21L3 SAA2 OR11A1 NXN LOC101929601 MTRNR2L6 CRX ZNF66 ADAM20 LOC107987363 MTRNR2L3 LOC105369189 AMN1 HYAL1 LOC107987364 KYNU VSIG1 LOC105379417 LOC107987004 EPPIN PDE6A RBM34
Down-regulated genes from COVID-19 infected bronchoalveolar lavage from patients ARMT1 ATP6V1E1 ACTN4 C5ORF15 CCZ1B CNBP C20ORF27 AMFR AP1B1 CCT6A CD4 CLNS1A CD9 BAX ACOT2 ADPRS ACOT1 ACOT7 CALM2 CALM3 CKLF CALM1 CES1 CGGBP1 ATP6V0D1 CMAS AHNAK CCNI AQP9 C3AR1 ANOS1 ABRACL AQP3 BACH1 ASAH1 APOL6 ACTB BSG CDC26 C19ORF53 ALOX5 CAPNS1 ATP5IF1 AKT1 AP2S1 CLPTM1 B2M APOL1 APOL4 ATG3 ATP6AP2 ATP6AP1 ARRDC4 COMMD3 COMMD1 ARFGAP3 COMMD6 BIN2 BTK CD302 ATF4 ATP6V1B2 ANAPC13 CDC42SE1 BEX4 CFD ANP32B ARL6IP1 ANP32A C9ORF78 CIAO1 C2 ADH5 ALKBH5 BLOC1S1 ALCAM ANPEP BLOC1S2 ARL6IP5 ARL6IP4 APOE A2M CD14 ARGLU1 CDK5RAP3 CCR1 BTF3 BLCAP AKIRIN2 CCL24 ACE ANXA1 AKIRIN1 ANXA2 CHKB ANXA4 CCDC115 ANXA5 AGTRAP AKR1A1 AP3B1 C6ORF62 ATP5F1E APBB1IP BST2 BST1 BHLHE40 C4ORF3 BHLHE41 COPG1 CALR ATP5MPL ALDOA AVPI1 ARPC1A ARF4 ATP5ME ARF5 ATP5MD BTG2 CLIC4 ARF3 ABHD5 CITED2 BTG1 ARF1 CETN2 ARPC1B ABHD2 ACAT1 CLTC CLTA ADIPOR1 C8B ACTR1A AATF ATIC BABAM1 CLEC7A C1QBP CD37 CLIC1 ATP5MG CD33 ATP5MF CCT4 CCT3 CD53 ATP6V1G1 CD52 CCT2 CBR1 BRD2 ATP6V0E1 ATP5PF BCAP31 ATP5PD ATP5PB CACYBP CNPY2 AKR1C3 CNPY3 ADAM10 APRT ADAM17 B3GNT7 APEX1 B3GNT5 ATP5PO B3GNT2 AIDA ARF6 CD44 CMPK1 C1QC C1QB C1QA CD63 AMIGO2 AKR1B1 CAB39 CAPG AIF1 ATP5F1A ATP5F1B ATP5F1C ACADM CIAO2A CD59 CIAO2B CCT8 CD58 CCT7 CCL18 CD55 CCT5 CD164 CD74 CD163 AOC3 APLP2 ATP1B3 ATP1B1 COPS5 COPRS COPS6 ARHGAP30 AXL CAPZA2 CCPG1 CLEC4A ARL8A CAPZA1 ABCG1 CHMP4B CD300C ADTRP CHMP4A COPS9 CD68 ARL8B C11ORF58 CD86 CD83 ATF6B CD81 AUP1 CIB1 ATP1A1 COMT CNDP2 BZW1 CMIP CCND3 CCRL2 CFL1 BANF1 CAPN1 CHP1 CAPN2 CDC123 ATP6V0C ATP6V0B CISH BNIP3L BUD31 AIP CHCHD10 ARPC5 C1ORF43 CAPRIN1 ALDH3A2 ARPC3 ARPC4 ARPC2 CHMP2B CDC42EP3 CHMP3 CHMP2A CARD16 ADSS2 CHMP5 BLVRB CERS2 BLVRA ATP6V1A CALCOCO2 ATP6V1D CD274 COPA CALCOCO1 C11ORF98 C5AR1 CD151 BRI3 COPB2 COPB1 ACTG1 ARL2 ATP5MC3 ARHGAP18 BOLA2B ATP5MC1 ATP5MC2 CNN2 ABHD12 BTBD1 APMAP ALDH3B1 CHMP1B CHMP1A ATP6V1F ACAA2 ACAA1 ATP6V1H AP2M1 CD99 ACTR3 COA4 ACTR2 C14ORF119 COA3 ABCC3 C1ORF162 CBX3 CMTM6 CMTM7 ARAP1 CDC42BPB ADA2 AHSA1 CDK9 CLCN7 COQ2 ARL2BP CDK4 ACO2 CMTM3 COPE B4GALT1 BCL2A1 AMD1 CKS1B BRK1 APIP AGPAT2 APH1A CA2 CNPPD1 ALAD C9ORF16 CASP4 CAPZB ADGRE5 ACP5 CASP1 ACP1 AARS1 BCAS2 ALOX5AP ANXA11 CIRBP CDC42 ATOX1 CFDP1 CLDN7 CAT APOC1 ALDH1A1 CDC37 APOBR APOC2 ANAPC5 ACKR3 ALDH9A1 CHURC1 AURKAIP1 CD101 CEBPA BECN1 CEBPB COLEC12 ACADVL ADPGK ALAS1 CLEC12A CCDC47 CCDC28A ATP2A2 ATRAID CLN6 ARHGDIA CLN3 ALDH2 ABHD16A ARHGDIB BNIP2 CCL4 BAK1 CDIPT BUB3 CHCHD1 COLGALT1 CHCHD2
Gr5vs Gr 4 KRT1 GBP6 KRT2 KRT9 AL391121 LINC01181 RPL17-C18ORF32 IL23A GSTA4 ZC3H11A TGFBI POLR3G FETUB DSC1 DEGS1 KANK4 SLC46A2 AL133352 PANK1 SERPINE2 CALML3 ASAP3 ALOX12B AC006262 AC129492 SH3TC2 HEPHL1 CHP2 KRT6C SAMD12 XCR1 POU3F1 SLC6A14 NSG1 HRNR FOXN1 LOR MAF IL22RA1 GGCT NCEH1 DLG2 VNN1 CDHR1 RAB5B BIRC3 FLG BEAN1 C5AR2 MT1X ICAM1 C3 RPTN AMDHD1 FAM162A THEM5 TGM3 LYN CCL20 KRT14 HSPA2 C10ORF99 AC092809 KRT10 SLC7A8 FAM84B DSG1 BLMH SERPINA12 CXCL8 LTB4R C5ORF46 CXCL6 CXCL5 AC139769 CSRP2 BOC FABP5P7 IRAK3 CA6 SLC13A5 ELMOD1 IL37 GPR1 MN1 LGALS7B NELL2 FABP5 LPCAT4 CEBPA PRSS23 IMPA2 PTPRZ1 KYNU XDH ADAMTS9 ARL5A NEFH BID
Chloroquine-7251 from Old_CMAP_down JMJD4 FBXO3 GLCE GTPBP6 ISL1 ERN2 CCS ARMC6 XPNPEP3 ORAI3 EPHA4 SMARCB1 C11ORF71 SLC25A40 MST1R RNF31 RBBP5 GPATCH1 ZNF701 ZNF304 PLEKHJ1 TBC1D17 KIRREL TIGD6 TMEM120B MPST C11ORF80 LOC171220 SUZ12P CNKSR1 STK25 C7ORF43 C19ORF28 IL7R ORC1L METTL2B C5ORF28 C17ORF91 OLFML2A NLK TRPM2 HOXC8 PSENEN URGCP C14ORF45 GFPT2 GAB2 PILRB TPCN1 TMEM177 MANSC1 FAM193B PIGH FBP1 ZNF230 TTC23 ABHD4 ABHD8 GPR110 ZNF629 TMEM209 RIPK1 CTNNBL1 ZNF862 TAF15 NDE1 EN1 TINF2 MID1IP1 TMEM62 ZDHHC13 ZNF804A MPP6 MYO19 KRT75 KCTD9 CLIP4 P2RX5 ERCC5 SMPDL3A SLC25A10 FAM86A ZNF574 FOXA1 DPY19L2P2 DBF4B MFF RPGR SOBP COCH MTRF1 FIP1L1 STBD1 KIF13B C8ORF60 MAPK3 TRIM21 SLC25A23 ZNF324 POLI
Chloroquine-1719 from Old_CMAP_down ACTN4 CIDEB BSDC1 DNAJB14 GTPBP6 GLOD4 KIAA0247 PLCD1 KIF20B UBE2M RPL23AP32 PTPN4 CHRNA2 NIP7 SERPINE2 EFTUD1 TOB1 ZFP30 ASAP1 CHST10 NACC2 LOC100288387 ST3GAL5 ZIM2 TIPIN IFNA17 PAQR3 DDX54 GPR109B MINPP1 SELP GPR183 NDUFAF4 C19ORF24 TRMT12 BLVRB CHST4 TMEM183A PARM1 CASZ1 CSTF3 LY75 GOLGA3 C20ORF20 CHMP1A ANKRD11 PIP5K1C RFPL3 COMMD10 NIPA2 RAB3IL1 TMEM43 MSL2 CLCN6 C4ORF41 PIGK AVEN B4GALT2 FAM114A2 SUV39H1 IER3IP1 PTBP2 LOC80054 CLEC7A MAN2C1 EMD IP6K2 CIC ZNF223 PARP6 MPP3 FAM46A TINF2 KCTD3 THAP7 MS4A6A NUDT9 TSPAN14 MRPL52 CCNE1 SNX15 C8ORF51 B3GNT1 NACAP1 ANKRA2 ANAPC2 TSEN34 ABCD3 MCM9 WIT1 LOC202181 PIK3C2B NUBP2 SAMHD1 MTG1 PHKG2 FBXO5 STRA13 UBE2NL OR7E37P
Chloroquine-2869 from Old_CMAP_down ZNF442 MOGS ERN2 RIN2 MPHOSPH8 HIST1H4E RNF2 CHPF DLST XYLT2 TRMT2B DCAF4 PARD6B MTA2 SERPINF1 ZNF669 SLC12A8 FGF23 PHC3 HLA-J F2R ATP8B1 XRCC2 LOC285830 PTK6 SLC16A10 FLJ10213 EIF2S3 SUZ12P TDRD1 CD8A GRB7 GUCY1B2 DKFZP547G183 C14ORF93 RCBTB2 DNALI1 HIST1H3B KIAA0894 HYI TSPAN5 CCRN4L HOXC4 FFAR2 PDK1 NKX3-2 SYBU ZFHX2 GUSBP3 SSR3 CARD8 LOC100291860 IRF2BP1 ETV6 ITFG2 DNAJC3 TH INCENP TTLL1 TFF2 USP36 NFAT5 B4GALT2 ZNF350 SUV39H2 LMNB1 MED18 ZNF41 TMEM209 ZNF587 HIST1H2AJ ZBTB33 FAM189A2 PACS1 GTF2H3 TBX19 HAUS2 PDP1 NOS1AP ERCC4 HNRNPUL2 ADAM15 DNAJA4 LOC390998 STAG3L1 TYRP1 FLT4 EHMT1 LOC202181 FLCN LYL1 LOC100288007 ARRB1 KIF13A MGC12488 ZNF205 ATP7A DCAF13 MYOZ3 POLH
Chloroquine-7012 from Old_CMAP_down SPINK4 DYNC2H1 TGFB3 PTCD2 ZBTB10 MITF FAM118A DHDDS EML4 C19ORF40 LOC100288413 ASPHD1 CRISPLD2 EPHA2 IFITM1 CCNT1 HIRA RNF31 ZNF8 MTHFSD MTA2 DHX35 HSD17B1 FSD1 ZNF668 DSCAM ZNF268 TMEM184B SLC35C1 WFS1 CISH HELZ C12ORF51 ZNF14 NARFL MED24 TDRD1 ARHGAP10 EFNA3 CCDC21 MAP3K14 C19ORF28 FAM108B1 PLEK2 METTL2B WDR44 RASSF1 GJA1 INPP5E PCDHA6 PIP5K1C TSPAN1 ERMAP ANKZF1 PET112L SYBU C2ORF34 VEGFC VAV1 LRRC20 BMP4 C16ORF62 KCNS3 ECHDC2 IRF7 TMEM185B AHCTF1 C3ORF52 TWF2 PCSK7 AGPAT3 HOXC11 FAM188A SNAPC2 FCHO1 B4GALNT1 HIST1H1D HIST1H2AJ RFTN1 ELOVL4 AKR1C3 ZNF816A C14ORF132 MPP6 KLF3 ETAA1 DDIT3 FAM86A DGCR11 TRMU LIN37 SETD8 ARRB2 CAPG THBS3 OPA3 RAC3 DIP2A RPL13P5 SLC25A23
Up-regulated genes in A549 infected with COVID-19 extracted from GSE147507 C2ORF74 MX1 GLCE WDR75 DEK BBIP1 IFT81 REV1 DKK1 MED6 LARP7 WDHD1 RBP7 SARNP RBP4 FDX1 POLR3G RPL22L1 HNRNPD FILIP1 NYAP1 EHF SAMD9 STAU2 PON2 C4BPA CLDN1 APOL6 FLRT3 MXI1 GBP1 SNORD76 GBP3 MTA3 APOL1 BATF2 PRPF38B TIGD7 PLK2 KLF10 DNTTIP2 MASTL C9ORF64 SULT2B1 PLSCR1 MSL3P1 PSME2 NOSTRIN CEP63 PSME1 PTP4A1 CFB CFH WDR43 RPL9 HIF1A C3 SMC3 C5 GJA1 LTA4H IER3 PNPT1 ANXA3 RDX PHF11 CCL20 GABRA5 TESC TCP1 FN1 CP GNL3 GNL2 MMP10 PIGK PAM NUP62CL SERPINA3 BTG3 CATSPER2P1 ZC3HAV1 ZNF518B MRPL33 HSPB11 LDHA PITPNA-AS1 MIOS CEP55 ZNF467 TIGD2 HSD11B1 STAT1 IFNGR1 ELOVL6 STAT2 MBD2 STAT4 KTN1 ADAM10 PTGR2 SERPINB7 PSMA6 PSMA4 USO1 NUCB2 PLIN2 STON1 FSTL1 ING2 PTGS2 IFIH1 PSMB8 ZSCAN30 NAMPT RIOK1 PRAME ZNF326 PAIP1 OLR1 PAIP2 PTPN2 USP8 SUPT16H ZNF680 TFPI2 USP3 TAP2 TAP1 MSH2 CLEC4E C1ORF116 HAT1 TEX9 MSH6 ZNF558 ZFP28 ZNF430 SLC27A2 PHLDB2 CSF3 CCNT2 PLOD2 GTF2E2 BZW1 TANK HSP90B1 RNF31 RBBP6 CDH1 HAS2 GTPBP10 LAMP3 SLC39A8 SLC16A3 MAP3K8 CCDC18 FANCI LRRC49 IGFBP1 IGFBP3 FRMD3 MYD88 MLXIPL LCN2 SMS XAF1 SP140L MNAT1 FAM49B UQCRB CUL3 AK3 CREM SAT1 EFEMP1 TPR DHRS4-AS1 THEM4 PI3 BRIX1 EIF5B KCNJ6 HSP90AA1 DTX3L EIF2AK2 EIF2AK1 ELAC1 PTPN12 NEMF MARCH7 CYB5A DNAJC2 DNAJC8 DNAJC7 LOC374443 PIR CEBPZ SERPINI1 NSRP1 SNAP25 SHOX2 MCFD2 FAM114A2 SYCP2L GMPS CBWD2 APIP MLLT3 NLRC5 DUSP16 C15ORF48 ORC2 PGK1 ZNF624 EIF4E B4GALNT4 SMIM13 ERVMER34-1 NOP58 REC8 LINC00473 CCDC58 ERAP1 SELENBP1 DNAJA1 EHBP1 SUCLA2 MYO1B EIF3J ESF1 MAP3K14-AS1 BLZF1 SEMA3A ITGB1 C1R C1S HDAC2 FHL1 DDX60L THBD EXO1 SUMO2 SUMO1 PTER FIP1L1 CCL5 TRIM25 TNNI3 SLITRK6 CTNNAL1 TRIM21 KCNJ2 NCK1 UGT1A7 SSB SMARCA1 SP110 ANKEF1 PLEKHA4 ACSL4 EREG SMARCA5 PML CCAR1 ASS1 LAP3 TMCC1 IFI27 SLPI SUB1 TRIM14 ANP32E IFITM2 IFITM3 SP100 IFITM1 FGL1 WBP4 TRANK1 ITIH2 UBE2L6 FLJ37201 HERC6 HERC5 HERC4 CHORDC1 IFI16 CCDC77 B2M GINM1 XRCC4 EAF2 PLA2G4A HLA-C PAPPA HLA-B IFI44 PARP14 HLA-F PARP12 CDCP1 PARP10 INTS6 DHX29 VEZT LTV1 PDE1A IFI35 IFIT5 IFIT2 IFIT1 ICAM1 GSPT2 IFIT3 GOLGA4 HELZ2 CCDC91 NUDCD1 PPAT PDK4 TNS4 EDN1 SLC10A7 CCDC117 NCOA7 TSC22D1 NMI AP3B1 RHOB IL1A IL1B BST2 P4HA1 THEMIS2 ID1 KRT18 DMC1 ALDOC SLU7 SUZ12P1 EBI3 STC1 C2CD4C CTSS ZMYM2 HLTF LARS MAP2 TM4SF20 SOCS6 MAP4K3 MMD IL32 MTX2 NFYB CCNYL1 SUSD2 THOC2 CACYBP TTC1 KIN THOC7 PARP9 STK17A CMPK2 SAA1 ERRFI1 PTGER2 FKBP14 AKR1B1 PRIM1 ZDHHC6 TXLNG PNMA2 RSRC2 CCT8 AKAP10 ANKMY2 CD55 RARRES1 CA11 MORC4 PTCD3 CPSF3 CWC15 CNOT10 TMEM130 DPM1 ARHGAP24 IFI44L ZNFX1 SHQ1 SLFN11 DNAJB11 PPIG STEAP1 PCNA TYMP ZCCHC7 ODF3B HSD17B4 BCCIP IFI6 SAMD9L NOL7 TMEM123 TAF1D CWC22 DNAJC21 BMPER MORC3 PDIA3 USP48 DDX58 SYT1 USP44 CKAP2 TDRD7 ISG15 DDX50 TBCA EIF2S1 ISG20 SNORD26 STT3B TAB2 DDX5 LGALS3BP DDX1 CACNA1G DDX60 FAM162A USP53 ZC3H15 MKKS KRT222 PAICS HSPA5 SPATS2 CBX1 HSPA4 OAS1 GPCPD1 NFKBIA IL6 OAS2 CPS1 NUP54 OAS3 IRF9 MNS1 IRF7 FAM72D GRSF1 LUC7L3 SMIM3 NNMT UBA7 BCL2A1 PSIP1 TNFAIP3 CXCL2 CXCL1 ADAR CXCL3 RPAP3 RPF1 CXCL5 NT5C2 CASP8 LLPH CASP7 AOX1 PDE4B SNAPC1 CA9 PDLIM5 FGA RBM39 FGB FGG ZNF184 KCTD6 SOD2 U2SURP GREM1 C19ORF66 FAM131B TRIB1 USP16 ERCC6L DDX21 PPP2R2A USP18 OASL SAMHD1 EVA1C KYNU BNIP3
Down-regulated genes in A549 infected with COVID-19 extracted from GSE147507 CHGA PRELID1 WDR83OS AHNAK2 SOX13 ZFYVE26 GRIN2C COMTD1 PTRHD1 EML5 RNF224 COL1A1 KIAA1217 DDX39A MEX3B CAPN10 TOLLIP TRIP6 TEP1 WDR81 VIM CDK10 ORAI2 CYB5RL DUS3L ASB1 PDXK JRK AHNAK RETSAT RPL10 AP5Z1 SERPINE1 HERC2P3 TESK2 ADCY5 LOC284454 DLL4 TPRG1L NEURL1B ASNA1 RRN3P3 KCNQ1OT1 PREX1 IGLON5 RALY NXNL2 VPS18 DMPK PLK3 SLFNL1-AS1 SLC16A13 NR0B1 VPS37C PDZK1 FA2H TBL3 TCN2 PRKAR1B FASN SAPCD2 FAT1 ITPA ATG2A NOX1 CHST3 HOXB6 TSTA3 RNPEPL1 IPO13 DANCR MEPCE TMEM91 TRIOBP FAM110A FASTK FDXR HMOX1 SFN PRIMA1 LOC100132356 MIR600HG MRPL23-AS1 PTCH2 HOXB-AS3 TET3 WNT9A SIRT7 KIAA1024 FAM102A ITPKC GJD3 MZT2B INF2 GPRC5C MZT2A NCOR2 ADI1 GNPTG AGO2 PLEKHM1 PHF19 ADA FLII ABHD4 KCNC4 ABHD2 CLTB IQGAP3 CYB561D1 MEG9 BBC3 DDA1 PANX2 AACS SHH C16ORF58 TIMP2 ZNF469 CEMP1 ATXN1 HMGXB3 AP1M2 TPRA1 MEF2D CDKN2C APC2 MBD3 CA5BP1 SLC39A13 MRPL54 ADAM19 COL4A2 A4GNT COL4A4 ZNF219 ENG DSCAML1 ZNF575 MTMR11 TGFB1I1 HTT GLI4 LFNG SMPD3 SMPD1 MIR22HG TSPO NUDT17 HS1BP3 P4HTM NUDT14 MAP3K3 RNF44 FBXW9 CORO2B BTBD9 FBXO10 LRFN4 SLC9A3 COPRS ACAP3 PINK1 MFNG ITGA11 RNF185 TCTA SQSTM1 TRABD2B UCKL1-AS1 PHLDB1 PPP1R15A URM1 LINC00482 KATNB1 LOC100289230 CTAGE7P NPAS1 BEST3 ACAP1 LOC100129534 CDH4 NACC2 SLC16A8 NPTX1 NDOR1 STX3 STOX2 PSKH1 PLEKHJ1 FLJ42627 ZNF785 ATP9A CCDC17 HPS1 DYRK1B TNFRSF10D KCNAB2 METRN CYP4F11 ESPNL SNORD18C FRMD8 METTL22 DGKQ MAFG BCAT2 MAP3K14 MAZ GLUD1P3 MSI2 ARHGAP1 WASH2P SAT2 CORO1B RHOBTB2 PCDHAC1 SNN MPC1 AMDHD2 PMEPA1 ANKRD11 SLC38A7 FBRSL1 BMF ZNF524 ATP6V0E2-AS1 SH2D5 SAC3D1 PTPN18 PRRT2 PRRT3 OSGIN1 NPC1 PTPN14 BAIAP2 MARCH4 CDK4 IL3RA TNRC6C L3MBTL1 GGT8P NLGN3 ASH1L-AS1 NDUFB2 FOXK1 RAP1GAP ADRA1B LBH DNAJB2 ADAMTS15 KLC4 P2RY2 DVL2 ACP6 DGCR9 AMH FNIP2 PGPEP1 SLC37A4 SLC36A1 COL27A1 PLEKHG6 PVRIG BOLA1 MGAT4B KCTD15 HDAC5 MDGA1 SRRM2-AS1 DYSF SYNE1 LENG8 CXXC5 SYNE2 TSPAN10 REPIN1 POLR2A HECTD3 LOC100287036 NAGLU PRADC1 HMG20B CNNM3 UPP1 EPHB3 UNKL SLC25A25 MLXIP SLC35A4 KRT4 IFITM10 ADHFE1 PLEKHA6 PLEKHA7 PEX10 NBEAL2 MAPK8IP3 MFSD12 GCAT GSTZ1 SFRP5 LOC646762 NEURL3 RRAGD ULK3 NSMF ULK1 MXRA8 OBSL1 TLN2 STX1B ATP6V0D1 ZNF324B WBP2 TAGLN CERK PPP1R3B LRP3 BCRP3 HERC2 HERC1 NIPAL4 CHAC1 SUSD5 CCDC78 NUMBL SRPK3 SLC34A3 PLA2G4C VASN ARFGAP2 VAT1 STAG3 WNK1 IGSF9B TAGLN2 ADCK5 TTLL12 FBXL8 PEMT NECAB2 BEX2 ART5 TRPM2 KLHDC7A ANPEP INPP5E ANKH ZBED1 CEP170B TSPAN1 AKR1A1 RHOD ZHX2 VEGFB CLDN14 SGK2 RTN4R NOXO1 OTUD7A NEU4 ACTR1B C10ORF95 SLC22A18 SH3PXD2A NEU1 DGCR6L FAM43B SNX8 LMCD1 CTSD PDRG1 ATP6V0E2 VASH1 THOC6 GAL PACS2 CARS2 RYR3 MEGF6 SYNM PAPLN DCST2 PEPD CAMKK1 AKAP13 PODNL1 MNT CILP2 LOC646214 SPTAN1 KIRREL3 CHRNB4 TRPV1 PCDHA12 PCDHA11 KLHL21 DOK3 GNPDA1 MZF1 NUPR1 FAM161B TP53I3 SCNN1D FAM173A POLE4 ISCU FIZ1 SPNS1 YPEL1 COL20A1 ALDH16A1 NDRG4 CRTC1 SLC1A5 CIB1 LOC100272217 LMNA PRSS53 RAB40A RAB40B TAF1C TMEM129 EP400 SREBF1 ARHGEF18 GEM EFNA2 MATN2 CARD14 MXD3 MXD4 PXN SLC2A1 RPS19BP1 PLCXD2 ETS2 PLB1 UAP1L1 PODXL FAM174B ALDH3B1 SIRPA MSC PRODH MIR3176 ATP13A1 SETD1B CYHR1 NAV2 GGN COQ4 CLCN7 FLJ16779 LPIN1 RABEP2 COL7A1 ASMTL-AS1 QRICH2 PLEC COPE LTB4R PMF1 SMIM5 ABCB6 ARHGEF10L HAPLN3 MARVELD1 SLC7A11-AS1 IRAK1 TMEM208 MYEOV LONRF2 WNT4 DACT1 CAD LSS ARID1B KCTD7 EEPD1 TRAPPC6A TBC1D7 IGDCC4 DDIT3 TRIB3 TELO2 MVK PKD1 RERE DCTN3 MVP PKD1L2 CLN8 NADSYN1 FLCN SPRED3 NT5DC2 C19ORF71 PCDHGC3
Healthy lung biopsy vs. COVID-19 infected lung series 15 from GSE147507 up genes MX1 PCGF5 MCTS1 MX2 DNAAF1 LOC643802 CD4 MARCKS SCGB1A1 RBP4 FAR2 HNRNPC TNFSF8 CDA PI4K2B IDO1 CKLF SF3B4 SAMD9 C1ORF194 SERPINE2 C3AR1 CLDN2 TMEM71 CLECL1 GNG2 APOL6 MILR1 GNG5 LINC00639 GBP1 GBP3 GBP5 PROK2 S100A12 S100A11 GBP4 EPSTI1 F8A1 JUND HLA-DRB5 C9ORF66 BIN2 TREML4 PLBD1 ST20 SNORA48 PSME3 SNORA74B HAMP CRYAB GAPT FREM2 PADI2 MS4A7 GABARAP SPI1 GMFG HPR SAMSN1 GATA1 GLDN PLAC8 ZC3H12A BLOC1S1 HESX1 AGMO FLJ45513 LYN PHF11 SCARNA21 TET2 TIMM23 APBB1IP SULT1B1 LINC00605 C4ORF3 SIGLEC5 HCST SIGLEC7 SERPINA1 ZC3HAV1 FPR1 IQGAP1 LITAF VSIG10L TRIM5 STAP1 SH3BGRL3 P2RY13 P2RY14 SF3A2 STAT1 STAT2 STAT4 WNT7B SERPINB9 RNASE2 F5 TMEM154 GPR141 PSMA4 DHRS9 TAOK3 PLP2 PELI1 CTF1 CCL11 PIGR SNX10 IFIH1 GNLY NAMPT GCNT3 MPV17 METTL7B CCL19 JAK3 PGLYRP1 CCL18 OLR1 TLE4 CD164 TOR1B GK LOC388813 TPM4 POU2AF1 PNRC1 NEAT1 SLC9B2 CXCL10 CXCL11 CLEC4D CLEC4E CLEC4A LY6E CLC ANKRD22 S100A9 FAM8A1 S100A8 VKORC1L1 CSF3R GTF2B HP UCP2 GPR65 TNF CXCL16 CXCL17 RNU11 RNU12 BCL2L14 LOC399715 CDH2 RNF19B LAMP3 NBN CFL1 SLC39A8 CERS6 LY86 ADRA2A STK24 LCN2 TPP1 XAF1 SP140L NOP10 MAP3K13 KCNE1 NCF4 GPR84 SAT1 CYP19A1 FAM216B MMP25 AMDHD1 PIM2 MAP2K6 RPH3A MGC12916 GPX2 EIF2AK2 TRPA1 DBNDD1 FCGR2A LCP1 BCL6 BCL3 SLC26A8 LCP2 FCGR2C SFT2D1 LRRK2 LY96 TREM1 TARP C15ORF48 FCGR3A PSTPIP2 FCGR3B LBP SERF2 MROH8 CR1 PATL1 KCNH7 CHIT1 RP2 EVI2B MNDA TRIM38 SFTPA1 BPI SFTPA2 PIK3AP1 SMAP2 CCDC71L WIPF1 C1S FHL3 DDX60L ARRB2 TREML3P FCAR TNFSF13B CLEC1A FCGR1A CCL8 CCL7 CCL4 CCL3 CCL2 IGF2BP3 TRIM21 ATP7B FCGR1B ARL5B KCNJ2 TRIM22 TMEM52B SP110 IL1R2 ACSL1 RSAD2 ITGB2-AS1 PML SNTN GBP1P1 LPAR6 XRN1 COL9A2 EIF1B ALPK1 PFN1 IFITM2 IFITM3 IFITM1 FGL2 AQP9 IL2RG GLRX UBE2L6 STX11 HERC6 ACTB HERC5 SLAMF7 B2M NTNG2 CDR1 RABGAP1L HLA-J BCL11A TNFSF14 CMC2 HLA-C HLA-A HLA-B IFI44 VASP VNN2 VNN3 RGL4 CYSTM1 APOBEC3A LST1 IL1RN ANP32A DCUN1D3 IFIT5 KLHDC7B IFIT2 IFI30 IFIT1 IFIT3 FTH1 MIER1 TNFSF10 FFAR2 LGALS9 ARSE TNS4 PSENEN CCR1 SIGLEC14 NCOA7 CCDC114 NMI RHOH TFEC HBA1 LILRB2 CYP7B1 LILRB3 HBA2 KLK10 NME1 SYN1 IL1A IL1B TLR1 CEACAM3 PTPRC KCNJ2-AS1 CEACAM1 NME8 CEACAM6 RNU6ATAC TLR4 TENM1 IGSF6 DAZAP2 HBB TOP2A BRCA2 CTSS CHRAC1 CLEC7A PDZD11 CD38 CD37 FCER1G CTSE CAMP SPRR2E CTSC CD53 GCH1 HCK PARP9 FKBP1A CD48 SAA1 OR7E14P C1QC POPDC3 C1QB CSTA WAS LILRA1 PTMS CST7 LILRA5 LILRA6 ZDHHC19 SPTLC2 DMBT1 RAB8A RAC2 ENPP6 RAB8B CD55 CORIN LMO2 ZBP1 CA12 GABRP CD74 G6PD GCA HRASLS2 TYROBP PDGFRL IFI44L DOK3 CAPZA1 MYADM CD69 YPEL3 CNTN1 TFAP2A FCN1 RGS18 TPSB2 NAPA NEXN IFI6 SAMD9L STRN4 BASP1 REPS2 MGAM ATP6V0C DDX58 CYBB ISG15 USB1 HIST2H2BE MXD1 DLGAP1-AS1 ALDH3A1 SELL CDHR5 CARD16 CARD17 C5AR1 CACNA1A PSEN1 SEZ6L2 CSF2RB CPLX2 DAPP1 DDX60 HCAR3 IL18RAP HCAR2 FLOT1 FDCSP ZNF385A ABCC2 MMP8 SRGN CBX4 PILRA OLIG1 ANXA2R OAS1 OAS2 OAS3 TNIP3 IRF2 ALPL IRF9 CHI3L2 MNS1 IRF7 ZMYND12 CHI3L1 NFKBID HS3ST3A1 RTN3 GPSM3 RNU4ATAC MCTP2 YWHAE HSPB6 BCL2A1 TNFAIP6 DNAH7 LMNB1 SIRPB1 CA1 C20ORF203 CASP4 CASP5 SP140 PDE4B CASP1 CYTIP RBM11 ALOX5AP VTRNA1-1 YWHAZ SOD2 FGR AIM2 HSH2D C19ORF66 PPDPF S100P DYNLT1 LTF HIST1H2BC HIST1H2BD USP15 STEAP4 RTP4 PLEK CLEC12A CXORF21 SIX1 MSMO1 OASL ARHGDIB VSIG1 PTK2B MDH1B
Healthy lung biopsy vs. COVID-19 infected lung series 15 from GSE147507 down genes STARD3 RBFOX2 UNC13B PRELID1 STARD9 ZNF160 WDR74 PRKAB1 DKK3 CHFR NISCH DDX39A PSMC5 PSMC3 C19ORF48 CYP1A1 PSMC1 DCHS1 ASB1 VPS28 SF3B5 PDXK AHNAK COL12A1 ADCY4 SPG7 DLL1 DCAF5 DLL4 ADCY6 TPRG1L PSMD6 MYC S100A13 PSMD2 PXDC1 ZSCAN18 KLF13 FZD4 TSPYL2 PHC2 RPL41 ZNF263 NEBL PMM2 MCAM NCAPH2 STARD10 VPS13D VPS37B TFIP11 NR1D2 FIBP BCR UCK2 QARS ITPA SIVA1 SNAI1 HBP1 MDC1 RPL3 MEPCE RRP1 XPC ENO2 GATA2 ELK3 ANAPC11 ABR C12ORF57 PPP3R1 GUCD1 GJA4 GRPEL2 HMOX1 IER2 SFN BLCAP WDR37 JUN DUSP1 SPHK1 NFATC4 NFATC2 GNL1 GNL2 ITPKC LETM1 MMP14 PXDN PQLC1 ITPKB PLEKHM2 RAPGEF3 MYZAP RAPGEF1 FXYD6 PLEKHM1 MGLL GAS6 ARPC1B AKAP17A TIMM13 CTCF LRRC32 FAM160B2 MYCT1 HMGXB3 MEF2D UTP6 FOS TTC7A TUBB4B FARP1 SERPINB6 XAB2 SPSB3 DDB1 EBNA1BP2 ADAM15 PLEKHO1 FOSB PLEKHO2 TSR1 ENG ZNF451 ZNF330 RPLP0 HEXA TCF25 HEXB NDUFA11 TCF21 SNX11 NOC2L TUBA1A SMPD4 ARFRP1 TUBA1C NDST1 CKB RRP12 BRD9 ZSWIM8 FBXW5 SEC24C USP7 SEMA4C PPP1R16B MUL1 FAM118A HIPK2 RPSA PPP1CA TUBA4A NRBP1 MADD MFNG MAPKAPK2 CSPG4 SREK1 LZTR1 SLC25A36 GOLGA8A KANK2 PHLDB1 RNMT PLXND1 ODC1 DLST GLT8D1 FAM214B SLC9A1 RNF31 CTGF GGA2 ABLIM1 ABLIM3 TUBB6 MFN2 SLC39A7 RPS5 FLNC SLC25A44 GRB10 EIF2B5 EIF2B4 LRRC47 ATP8B2 OSBPL5 AIP FBXO31 PGF PYGO2 MAFF MOB2 MAFG BCL2L1 DNMT1 ST6GALNAC6 BCL2L2 TUBGCP2 NAB2 FAM13B CUL1 EDC3 EDC4 BAG3 C6ORF106 UROD PLXNA2 MAF1 MOAP1 SLC38A5 PPP1R12A TMEM255B MICAL3 WIPI1 FAM219B CDC42BPB TMBIM1 CDK9 DNAJC7 MFAP1 NES MCM7 EIF4E2 BCAR1 SLC25A4 SLC25A3 SRCAP LMBR1L ITPR3 FOXK2 ITPR1 LBH DNAJB2 APH1A RRP7A PPP6R2 VPS54 CCDC85B DNAJB4 RALGDS ACP2 MBIP PPP1R14B DST ATRX CIRBP SELENBP1 RANGAP1 MYO1D KCTD10 CDC37 CTDSP2 EIF3G EIF3B NOP56 TSSC4 CANT1 PPP1R13B HDAC3 LUZP1 ZBTB44 TTL SEMA3F PBXIP1 HDAC7 SLC25A29 SIN3B ADAMTS2 KCTD20 UPP1 SLC25A25 MLXIP PCDH1 SLC35A4 ENTPD6 RSAD1 BSDC1 AMFR AFG3L2 CD2BP2 ULK3 CCM2 BCOR AKAP1 BAIAP2L1 EXOSC7 SEPHS1 E2F4 CCNL2 EGR1 GADD45B ARRDC2 XRCC6 GADD45G HLA-H SNHG15 RPS28 SMTN DHX29 BAP1 TCERG1 PCDH12 MPHOSPH10 PIEZO1 CTR9 TXNDC11 UBE2J2 TNS1 GOLGA3 RASSF1 INPP5A PELO NUDCD3 KAT5 MICAL1 KIAA0930 PDE2A INPP5K EPC1 ASL LCN10 TSPAN4 ATP6V0A1 STAT5A ATP6V0A2 SFTPC HARS2 FAM32A MRPS2 ID3 CC2D1B ARHGEF7 SGK1 UBXN1 ACVRL1 RRAD ZFAND2B C2CD2 STC1 MEDAG ZMYM2 ACTR1B SH3PXD2B MAP4 SH3PXD2A STK38 C1QBP QSOX1 SPRYD3 MLH1 METTL3 PRMT1 THOC6 MYO9B SGSM2 GAK TXLNA CTTN PER1 SGSM3 F2RL3 ERRFI1 ROBO3 ROBO4 FHOD1 ZDHHC7 TRAK2 CRIP1 TRAK1 HERPUD1 CXORF40B GUK1 ALS2CL SERTAD3 SERTAD1 CCT8 KLHDC3 RALBP1 PDGFRB PTCD3 RARRES2 ARHGAP29 TRPC4AP TANC1 EEF1A1 ILVBL WBP1L PPIG AMOTL1 MPHOSPH8 RAF1 INPP1 KDM1A CD82 GALNT18 NOL8 PRKY PRDM2 CIB1 NDRG1 RXRB CCND1 EFNB1 PES1 HCFC1R1 S1PR2 BAALC SASH1 FDPS PCID2 ARHGEF15 DDX56 TBCD NASP CTPS1 SMAD7 SSH1 DEXI SSH2 PAN2 ARHGAP10 SKIV2L CCDC130 SAE1 DOCK6 DDX5 LRRFIP1 NR4A1 RGS3 PODXL KIF3B CHMP1A TMEM109 CAMTA2 CYC1 ANKZF1 URGCP SUN2 EGFL7 SUN1 USP22 HSPA8 NAP1L4 ARAP3 PYCR2 PARVB RPS3A URB1 TGFBR2 IFT43 MEIS1 PEX5 NDUFS6 RASA3 ATG4B GRSF1 DOCK1 LUC7L3 B4GALT3 AGAP3 TNFAIP1 DDX42 DTX4 DPP7 H2AFJ ZC3H7B GMPPA TMEM208 ZC3H7A RHBDF1 SGTA DAPK3 TBC1D9 USF1 THAP2 TAF1 ERCC1 CLDN5 PIK3IP1 CRY2 POLDIP3 LDB1 EHMT1 USP19 RND1 SPRED1 VSIG2 MAT2A GNA12 RPS6KA2 LRIG1 SCYL1 GET4 RBM6 CYTH1
MERS-CoV 38 Literature-Associated Genes from Geneshot GeneRIF TMPRSS11A DDX58 HSPA5 HLA-A ISG15 HLA-B TMPRSS13 TICAM2 SMAD7 TMPRSS11E ACE2 PPIA SPINT1 CD9 CEACAM5 IRF3 PPARG RAPGEF3 PRKRA ADA TP53 HLA-DRB1 VCP IFITM3 C5AR1 FURIN IFITM1 TMPRSS2 FGF2 ATP1A1 RCHY1 DPP4 IFIH1 IRAK3 UBB CTSL TRIM25 IFNB1
MERS-Cov Top 200 Predicted Genes from Geneshot GeneRIF via AutoRIF Co-Occurrence Gene Similarity MX1 IL1R2 RSAD2 MX2 PSMB9 MAPK14 MEX3C SPINT2 HSPA1A HSPA1B IFITM5 PRKAA2 IFITM2 IFITM3 SAMD9 IFITM1 TAGLN C3AR1 RNF5 UBE2L6 HERC6 IFNL1 ACTB HERC5 DHX33 IFNL2 TFG IFI16 DHX36 GBP1 B2M GBP4 EPSTI1 GADD45B COG6 HLA-C PUM1 IFI44 HLA-F PLSCR1 ITM2A TDGF1 ATP6V1B2 IL23R IFI35 TXN IFIT5 RPL9 IFIT2 IFIT1 ELK4 IFIT3 TBK1 ANPEP PRDX2 AP1S3 EDN1 FCRL3 EDN2 ANXA3 IL10RB PRSS16 FN1 TMEM173 MTSS1 MMP10 BST2 ECSIT MMP19 HLA-DQB1 TLR8 TLR7 TLR3 SERPINA3 TMPRSS4 IGSF3 ZC3HAV1 TMPRSS2 PTPRM HNF4G SEC14L1 SOCS1 TRIM4 CTSD STAT1 IFNGR1 MME STAT2 RNF125 PLP2 CANX HLA-DPB1 FKBP11 IFNA8 IFNA2 IFNA1 TRAF3IP2 RARG IFNA4 AKR1B1 HERPUD1 ZDHHC5 IFIH1 RNF135 PSMB8 IFNB1 RIOK3 NEFH CORIN CA12 IL4R TMPRSS13 TICAM1 CXCL10 CXCL11 IFI44L LY6E PPIB AGRN CD81 IFI6 TANK CDH2 STX6 NLRP2 HLA-DOB ABCF1 IFNA14 DDX58 IGFBP4 INHBA TRAF3 ISG15 NFKB1 TMPRSS11D EIF2S1 ISG20 MAVS TRAF6 BIRC5 CHMP2A RNASEH2A IFNAR1 GCM1 ANKRD17 LGALS3BP PLAU DDX60 UBC UBD MAS1L HSP90AA1 DTX3L HSPA8 EIF2AK2 TNIP1 OAS1 IRF1 OAS2 IRF5 ELF5 OAS3 IRF2 ADORA2A IRF3 IFNG IRF8 HLA-DRA IRF9 ITGA6 IRF7 TRIM56 DDX3X YWHAE TNFAIP6 TNFAIP3 ADAR PGK1 MCOLN2 KLF5 YWHAZ AIM2 IL2RA IMPDH2 TRIM32 UBA52 OTUB1 OTUB2 ITGB2 USP15 ZNF177 RTP4 C1S USP18 OASL SAMHD1 GNA12 DHX58 TRIM25 TRIM22
MERS-Cov 6 Predicted Kinases Genes from Geneshot GeneRIF via AutoRIF Co-Occurrence Gene Similarity PRKAA2 TBK1 EIF2AK2 PGK1 RIOK3 MAPK14
Genes whose expression is altered by MHV infection CD74 WFDC21 RPS8 RPS9 RPS6 RPS7 MYH9ORM1 H2-AA RPSA SERPINA3K EEF1A1 RPS12RPS14 RPL26 HIST1H4H FAU S100A9 S100A8 IFITM3 RPL11 RPL13 H2-K1 RPL12 HP MT-ND3 MT-ND4 MT-ND1 MT-ND2 ACTB RPS5 RPS2 RPL17 RPL19 B2M H2-D1 C3CCNB1IP1 RPL41 HBB-BS EEF2 HBB-BT RPL13ARPL14 RPS27RT LCN2 RPS21 MT-CO3 RPS23 HSP90AB1HSP90B1 RPS24 CFB RPL5 RPL6 RPL3 RPL32 ACTG1 RPL7 HPX RPL8 RPS15 RPS18 RPS17 HIST1H3B RPS29RPS3 UBC UBB FTH1 RPL36 APOE RPS11 GPX1 HSPA8 AMBP MT1 APOA2 MT2 BST2 FTL1GAPDH PTMA TRFTTR RPL37A ALB APOA1 EEF1G PABPC1 RPL38RPL4 IFI27L2A LYZ2 HIST2H2AA2 SERPINA1B SERPINA1C SERPINA1D PSAP RPL10-PS3 RPL36A SERPINA1A GM10800 RPS27A FGA GM2000 HAMPHBA-A2 FGB FGG AHSG RPL23A MT-ATP8 APOC1 LARS2 RPS3A1 MT-CYTB FABP1 TPT1 ORM2 H2-T23 RPLP0 RPLP2 SAA1SAA2 RPLP1 MT-CO1MT-CO2 RPS4X TMSB4X MT-ATP6 GC RACK1 RPL7A
Genes whose expression is altered by SARS=COV-2 infection STARD3 G6PD KRT5 ACTN4 S100A2 RPS6 RPL23 CRIM1 KRT7KRT8 ATP1B1 NEAT1 EREG HSPA8ICAM1 EEF1A1 MYL6 PPIA MTHFD2 PSAT1 VIM RPL26 S100A6 RPL28 SQSTM1 PFN1 AHNAK RPL10 SERPINE1 PPP1R15A RPL12 CTGF KRT6A FDCSPFDPS ACTB ANTXR1 PSMD3 PTMARAI14 CFL1 PLAUPLOD2 FLNB ALDOAAMIGO2 SLC38A2 IGFBP4 IGFBP3 EIF1EIF4B EEF2 SAT1SCD ACE2 FASN ALDH3A1 LCN2 RPS20 FTL SLC7A5SPP1 ATF4 RPL5 RPL4 GSTP1H1F0 TXNRD1UBC ACTG1 ENO1 RPL9 IFIT2 CPLX2 RPL7 LOXL2MIEN1 RNF213 RPS19 PMEPA1 FTH1 AKAP12AKR1B1 NFKBIANPM1 IER3 TIPARP JUN ANXA2 EIF5A ABCC3 GPX2 HSP90AA1 ITGAVITGB1 TPI1 LAMB3 ITGA3 TUBB ITGA2 ASNS LIF NAP1L1 RPS3A DHCR24 HMGA1 DCBLD2 VEGFA KRT19 OAS2 KRT18 C3CALM2 GAS5 PABPC1 AKR1B10 CALR CD24 RPL3RPL37 SERPINA3 TRAM1 TOP2A STC2 KRT23 LAMC2 TNFAIP2 SLC7A11 LDHA ERBB2 TGFBITGM2 CXCL5CYP24A1 PGK1 RPS27A SPTBN1 NQO1 STAT1 RPS24RPS27 AKR1C2 YWHAZ TUBB4B PKM HNRNPA2B1 ALDH1A1 DDIT4 ASPH TXNIP P4HB GAPDH KRT81 HSP90AB1 YBX1 TPM1TPT1 RPS4X TMSB4X TUBA1B NAMPT RPL7A FADS2
Down-regulated by MERS infection of Calu3 cells NIPSNAP3A HSPE1 SCAMP1 WDHD1 PSMB9 CD9 UQCRC2 ORAI3 ACOT7 ASF1B SLC5A3 TPGS2 CLDN2 CLDN1 ASNA1 DPYSL2 GMDS NUP85 S100A14 RPL15 STOM RPL14 UBASH3B WLS S100A10 GBP3 GBP2 GTSE1 CHST9 NDFIP1 ICMT GSTK1 GABARAPL2 PRR11 ATP6AP2 DHFR PBX1 EHD2 BACE2 VANGL1 BCAM PLSCR1 GNE VAMP3 HOXB6 LXN RPL31 WDR48 CDCA3 ANAPC16 RPL30 GNS TMEM97 C14ORF166 CEBPZOS F11R HACD3 MRPL11 LIPA ADH5 PRDX3 PRDX6 GJA1 STMN1 PRDX1 PRKAR2A NYNRIN LIPH ARPIN RPL39 PROM1 CENPU SRP9 FGFBP1 IKBIP BTF3 GSDMD GSTM3 ANXA4 RMI2 H3F3A BMP8B EMP1 KIAA1143 PRSS12 LYZ GPRC5A GLUD1 CENPF FAM210B MRPL30 FXYD3 EXOC4 PAM CDKN3 SLBP SERPINA3 ADK ACAT1 RPS27L OAZ2 SKA2 ACAT2 LDHB SH3BGRL3 RSU1 TIMP2 FLVCR1 CEP55 DLGAP5 HELLS TIMMDC1 LEFTY1 DYNLL1 PPARA ODAM ELOVL5 SLC2A12 ELOVL6 PTGR2 KIAA1161 FAM213A COX6B1 SERPINB6 ERP44 PSMA6 NUDT21 FABP5 PSMA2 HADHA APEX1 PLP2 CKS2 OAT FH GRN XXYLT1 HEXB GSTP1 PYGL CENPA FAM127B LMAN1 TUBA1C HLA-DMB TUBA1B KIAA1147 RPL23AP42 ANXA9 MDH1 TMEM14B NUDT15 TMEM14C PAIP2 SEPT10 TPM4 TFPI2 TPM2 SEMA4G HNRNPAB S100A6 PDCD4 TUBGCP4 CDKN2AIPNL RNASEH2C SRSF2 CLU BZW2 LAPTM4A CDH1 RBBP4 TPM1 STX7 SAP18 SLC39A6 RBBP7 SPP1 ACSS2 HMGN1 ZCRB1 IGFBP3 LRRC45 STK24 ARPC3 PUDP LCN2 SMS PCYOX1 RNASEH2A TMEM19 NIT2 SYAP1 CALCOCO2 PFKFB4 FMR1 FAM107B TACSTD2 UBFD1 FBXO25 GSTT1 CORO1C UQCRH ESD NEK2 OIP5 TMSB10 LINC01420 GPX2 HSP90AA1 VBP1 MSL3 SMC1A NIPSNAP1 AHSA1 DBNDD2 TNFRSF21 NPC2 LCP1 TMBIM6 SERINC3 NEMP1 METAP2 SERINC5 NDUFB6 NDUFB5 GLO1 NDUFB4 HMMR BRK1 ATP5B ATP5E PGK1 PDDC1 EIF4H BCAS1 HN1L ERAP2 CTDSPL MFSD14B DNAJA1 MYO1D EIF3L EIF3H OCIAD1 ALDH9A1 MTCH2 SEC11A WDR1 ITGB6 SRI SEMA3G KIAA0101 HSD17B12 HSD17B11 SUMO2 GM2A UGT1A6 SNRPB2 PCBD1 RPL7A POLR2L ATP5F1P5 DUT IMP3 FBXO2 RECQL LACTB2 KIF20A HECA CALM1 AHCYL1 APP TMEM87B KDELR2 PLEKHB2 CSN3 PRCP GLRX MYL12B TIAL1 CHEK1 SNRPD3 RACGAP1 PEG10 C22ORF23 IARS2 CPNE3 B2M FIS1 COX8A XRCC5 TMEM50A XRCC6 HLA-C HLA-A GBAS TPX2 ALDH7A1 CYSTM1 ITM2B APOBEC3C RPS24 CDS2 GPM6B ANP32B ANP32A MAGED2 GDE1 PTTG1IP BRCC3 MGST1 IFI30 ZNHIT3 TSPAN8 FTH1 PDK4 TSPAN3 DECR1 CTSA RHOA PTGES3 NMI OSMR MRPS6 NME2 VEGFB FUBP1 P4HA1 CCNG2 ID2 AKR1B10 CD24 TOMM7 SLC35E2B COX7C SLC44A4 COX7B CETN2 FITM2 RTF1 ZBTB8OS BRCA1 KHK LIMD1 HSP90AA6P HINT1 NNT SH3BGRL PDZD11 CTSL PHGDH CLIC1 NQO1 CCT4 CAP1 ATP6V0E1 VKORC1 SORT1 SCD5 CREG1 ORMDL2 PGRMC1 THOC7 SPC24 SPCS1 SPC25 CD44 CSTB CD63 GDI2 CAPG COX5B TRAK1 PNMA2 RAB8A ENPP5 CD59 RARRES1 KLHDC3 GABRP CD74 NPNT G6PD UBE2C CRTAP GINS4 APLP2 KLHL24 ATP1B3 ATP1B1 SDHC UBE2T CAPZA1 LRP11 NDUFB11 CHRNA5 SLC1A1 AURKA SCNN1A HSD17B4 MRFAP1 PEBP1 GALNT11 NDRG1 ATP5J2 TMEM248 GPC4 GAS2L3 NDUFV2 FDPS IDH1 ACBD5 TCAF1 NONO IDH2 DSTN KIF23 TBCA TMEM230 DARS2 NAALADL2 CCNA2 ADGRF1 MAVS DDAH1 DYNLRB1 MFGE8 MICU1 VCL SLC41A3 SRP14 SEL1L3 TGM2 CCNB2 PTRF FAM162A ADGRG6 ACAA2 FAM81A CD99 BCKDHB PCDHGA9 PAICS DARS MMP7 SUN1 GALNT3 CBX3 CAV1 PARVA RCN1 RFT1 MANSC1 PRTFDC1 ACTG1P19 HP1BP3 RTN3 B4GALT4 LMNB1 DBI HMGB2 CALB2 LASP1 UPK1B MFSD6 NUP43 BCL7C ERBB3 YWHAQ ERICH5 MFSD1 HIBCH PDLIM5 RRM2 H2AFZ ZNF185 DYNLT3 GLRX5 SOD1 DENND6A S100P SSBP1 MVD DYNLT1 PXYLP1 LAMA3 GMPR2 ATP5G2 SLC4A7 DDT CHCHD3 PALMD LEPROTL1 VSIG1 PDSS2 BPNT1 CHCHD1 CHCHD2 BUB1 NPTN
Up-regulated by MERS infection of Calu3 cells MED1 NGDN RC3H1 C20ORF194 ARMC8 PRKAB1 GAPVD1 GTPBP4 NECAP1 POLR3A POLR3C CDK12 HNRNPC ZNF398 ATF3 MTMR3 EHF ZNF274 MAML1 MTMR9 BACH2 RNF4 DCAF1 FAM168B MTA2 SCAF8 VPS18 RNF111 PHC3 PMM2 ZNF140 PLK2 KLF10 INO80 PARD3 BHLHA15 CIDECP ELL2 ZNF16 ZNF17 FOSL2 NPLOC4 GIGYF2 ABTB2 LATS1 FOSL1 MLLT10 ZFAT PSME3 ATF7 MCPH1 ITSN2 BCL10 NEDD4L RRP9 LARP1 PCNX2 ZC3H12A RNF216 ZC3H12C ZNF280C PIP5K1A PNO1 SUPT20H IER3 JUN DUSP1 CCL20 NFATC3 TET2 ASH1L EPS15L1 ZNF34 SAMD4A ZNF35 CDC6 LETM2 SLC7A5 RNF146 TADA2B MTF1 UBAP1 REL RNF145 GMEB2 ZNF473 YTHDC1 AKAP17A RASAL2 FAM171A1 ATXN2 ORAOV1 ZNF227 HMGXB3 KRT8P12 YTHDF2 BRD2 ZNF462 BRD1 MBD1 AEN ELP3 RRP1B SCAF4 SNX19 C6ORF48 FOSB TSR1 ZNF217 ANKRD40 SRFBP1 ZNF335 SETD5 ZNF211 SLC8A2 LYST SMG7 FSTL4 IFIH1 NKRF PLAGL2 GCNT3 RIOK1 RRP12 NFRKB SETD2 PTPN1 UVRAG BRPF1 MAP3K1 BRPF3 ZBTB11 RNF41 ATXN2L SLC25A38 RALGAPB TFCP2 CLUHP3 CNOT4 ZNF319 PKP2 ZNF317 TNIK SEC24D LZTR1 ZNF550 CSF3 CSF1 PPP1R15A ZBTB24 IL1RAP FOXO3 GGA1 EIF4ENIF1 GGA3 FGD6 RBBP6 KIAA0753 C1ORF109 MAP3K9 RBBP8 TXNL4B STX3 MB21D2 KIRREL TRAF1 HPS5 TNFRSF10D TNFRSF10B PPTC7 FBXO31 FBXO32 MAFF RCAN1 MED23 MED26 FRMD6 PITPNM2 MAFG CDC42EP3 BIRC6 SPIRE1 BIRC3 ZNF410 MAX ANKRD17 GPATCH2L FGF2 RHOBTB1 EDC3 GLIS3 OSBP SESN2 ZNF407 ABL2 SLC38A7 ZNF526 PIM3 ZKSCAN5 ZNF764 SETDB1 BDNF MSL2 QKI ARL4C ADORA2B BCL3 ETF1 BCAR3 EIF4B GTF3C4 ZC3H4 TNKS AMD1 MAPKAP1 SPATA2 UBR5 UBR1 DUSP16 BICD1 BICD2 CYR61 DNAJB1 DNAJB6 TNPO3 IP6K1 CEACAM19 SMOX ZBTB39 FEM1A FOXJ2 KLF4 ZFP91 QTRT2 EHBP1 KPNB1 RAD52 KLF6 SNRK TXNIP RUNDC1 TRIM32 CSNK1G1 BDP1 NECTIN4 CBLL1 OR7E4P ZBTB48 KIAA1551 ZBTB43 TULP4 KIAA1671 FAM208B HDAC9 SART3 ADAMTS1 PTPRZ1 NHS WDR7 HMG20A SLC25A25 CDON SFMBT1 GIN1 MGA ANKEF1 PSG4 MED13L PISD NEURL3 NEURL4 CCDC86 TRIM16 SIK3 ZNF710 DCP1A MRM1 CDKN2AIP DHX30 NUAK2 ELMSAN1 DHX37 E2F6 CCNL1 KRT223P NTNG2 EGR1 EGR3 XBP1 TNFSF15 GADD45B GADD45A ARRDC3 ARRDC4 STAM TOPORS NCEH1 SPATS2L INTS6 RCOR3 DOPEY1 RP11-844P9.2 PITPNB GCC1 JMJD1C TXNDC11 IKZF3 ICAM1 GSPT2 ZBTB4 GOLGA3 RASSF1 GOLGA5 RUSC2 INPP5E GOLGA1 DPF2 HIVEP2 EPC1 SOX9 PPP1R10 TP53BP2 KAT7 SEC31A AKIRIN1 TSC22D2 ATMIN TSC22D1 TNFRSF12A NCOA5 VEGFA ZBTB9 RAD51D NFX1 ARHGEF2 CRELD2 AARS RANBP10 RABGAP1 CSRNP1 GGNBP2 CSRNP2 IGHMBP2 FXR2 SOCS2 PPRC1 ZMYM4 DPH2 PDRG1 PARP6 IL32 ZFX PARP8 PER2 TJP1 WAC TTPAL NRP1 FAF2 CRAMP1 SH3RF2 SERTAD2 XPO5 FILIP1L TBC1D22B VWDE ZNF77 MOK ARID3B MID1 ERN1 ANKHD1 TANC1 TANC2 ARHGAP32 GNPDA1 COL20A1 RAF1 ZSCAN9 PRDM4 RP11-1070B7.2 ZNF3 CELSR3 NOL6 EFNB2 ZNF81 REPS1 ZC3H10 YARS NFXL1 INHBA ADPRHL1 SLC30A1 HELZ SMAD7 GEM PAN2 SRPRB GEMIN5 STT3A TAB3 USP42 CHMP7 CREB5 ZCCHC2 USP54 WWC1 KLHL18 SRPRA ARHGAP17 ETS1 SYDE2 RASGRP1 POGZ UBD IL6R MARK3 COX10 ARID2 RBM18 HSPA9 TIPARP URGCP RUBCN AC141586.5 USP21 RHBDD3 SMURF1 USP24 SHROOM3 NAV3 YY1AP1 TGFBR2 TTI2 IRF1 NFKBIA VCAN IL6 ASAH2B ELF4 GCSAML EEF1G IRF6 LPIN2 NFKBIE USP36 TMEM55B CXCL8 KDM5C GSK3B ZNF197 NOP2 HSPB8 TNFAIP3 TRPS1 CXCL2 CXCL1 CHD4 CXCL3 CHD2 FAM188B FAM83G IRAK2 NRIP1 USP31 LONRF3 FAM83C KDM6B KDM2A WTAP NOS3 FNDC3A FNDC3B KCTD5 THAP1 TIAM2 FAM179B KANSL3 HKDC1 DDIT3 NAXD TAF3 TRIB1 USP15 USP10 GOSR1 TUFT1 DDX24 THBS1 DDX20 TNKS2 KANSL1 RND3 NR3C1 RND1 CYTH3 TRA2B LRIG2 DIP2C RBM33
Up-regulated by SARS-COV-2 infection of Calu3 cells MX1 MX2 ROCK1P1 GTPBP2 PSMB9 L1CAM SYTL3 KIAA1217 MTHFD2 CYP1A1 IDO1 OPTN ATF3 SAMD9 SERPINE1 BACH1 BACH2 CH25H APOL6 IFNL1 IFNL3 IFNL2 TP53INP2 GBP1 CYP1B1 HES1 GBP3 ST3GAL1 GBP2 IFNL4 GBP5 APOL4 GBP4 EPSTI1 ZNF267 APOL3 SDS BATF2 JAG1 KLF10 NR1D1 NR1D2 FOSL2 LATS2 FOSL1 PLSCR1 ATF4 BCL10 PDGFB GATA6 GATA3 SAMSN1 C3 RNF213 NUB1 ZC3H12A ZC3H12C NKX3-1 IER3 C5ORF56 DUSP5 LYN PNPT1 JUN GSDMB CCL22 PHF11 DUSP1 CCL20 SEC16B NFATC2 SAMD4A DUSP8 ITPKC SLC7A5 MMP13 CYLD ZEB2 BHLHE40 BHLHE41 JDP2 GARS SERPINA10 ZC3HAV1 KIAA0040 BBC3 TRIM5 C6ORF58 RIPK2 SERPINB2 ZNF462 STAT1 STAT2 IFNGR2 SERPINB1 G0S2 F3 SERPINB9 SERPINB7 DAB2IP SPSB1 FOSB NDUFA4L2 MAP1B PELI1 ZNF217 HBEGF SRFBP1 CDKN1A PTAFR TMEM140 FSTL3 PTGS2 IFIH1 PSMB8 C18ORF25 NAMPT RIOK3 RICTOR KRTAP2-3 ZSWIM4 JAK2 ZBTB10 TAP1 PNRC1 TICAM1 NEAT1 CXCL10 CXCL11 PSAT1 TRAFD1 ADM2 AJUBA SLC25A37 PPP1R15B ALDH1L2 PHLDB2 CSF3 CSF2 CSF1 PPP1R15A TNF FOXO3 C6ORF132 FOXO1 CTGF BCL2L14 BCL2L11 FGD6 ZFP36 RNF19B LAMP3 FLNB MAP3K8 MB21D2 SLC15A3 FST TRAF1 TNFRSF10B NFKB1 NFKB2 FBXO32 MAFF RCAN1 MYD88 XAF1 SP140L BIRC3 MAP3K13 ANKRD33B CD274 NCF2 IRS2 CDC14A SAT1 C6ORF223 C6ORF222 ABL2 PIM1 C1QTNF1 SEMA7A DTX3L EIF2AK2 KCNJ15 CFLAR ASNS MARCH4 BCL3 DSG3 SP8 TRIM56 NFE2L3 BCAR3 NFAT5 GMPR NLRC5 DUSP16 CYP3A5 CYR61 C15ORF48 DUSP10 DENND3 DNAJB4 PHACTR4 RREB1 SKIL PLEKHG7 KLF4 KLF6 TXNIP TRIM38 SEMA3A C1R MIR155HG C1S ZBTB43 DDX60L PPM1K ITGAM HDAC9 TNFSF13B DHX58 CCL5 TRIM25 CCL2 FBXO6 TRIM21 TRIM22 SP110 LRRN3 EGOT RSAD2 PLEKHA4 TTC39B EREG PML GBP1P1 NEURL3 LAP3 XRN1 CTH TRIM14 UHRF1BP1 SIK1 DCP1A IFITM2 LRP2 SP100 IFITM1 TRANK1 UBE2L6 HERC6 HERC5 RAB11FIP1 NUAK2 PARD6B HMGN2P46 IFI16 FLT3LG CHAC1 CCNL1 N4BP1 EGR1 APOBEC3D EGR2 APOBEC3F APOBEC3G TNFSF15 GADD45B GADD45A PLA2G4C ARRDC3 ARRDC4 NUAK1 IFI44 PARP14 HLA-F CNKSR3 PARP12 PARP10 LST1 CREBRF IFI35 IFIT5 KLHDC7B WFDC5 IKZF3 IFIT2 IFIT1 ICAM1 IFIT3 SOX4 MT2A HELZ2 HIVEP2 EPC1 HIVEP1 KIF21B SOX9 TNFSF10 IL12A TP53BP2 RIMKLB LGALS9 SYNPO EDN1 EDN2 WARS TSC22D2 IL15 NCOA7 BTN3A1 NMI LIF TUBE1 VEGFA IL1A IL1B BST2 DEPDC7 CEACAM1 THEMIS2 KRT17 KBTBD2 CD22 TLR3 CSRNP1 CSRNP2 CITED2 SDC4 SECTM1 STC2 TMPRSS3 KRT23 NEDD9 ADRB2 TNFRSF11B CX3CL1 PTPRH DUOX1 DUOX2 UGCG GSE1 ANKRD1 PCK2 PARP8 PA2G4P4 PARP9 PDP1 B3GNT7 DLC1 PER1 NEDD4 B3GNT5 CMPK2 ERRFI1 AMIGO2 PTGER4 AKAP12 SERTAD2 RSRC2 IFNB1 HDX FILIP1L TBC1D22B RAB8B ZBP1 TGFB2 HRASLS2 LIFR VCAM1 IFI44L ZNFX1 ULBP1 AMOTL2 OTUD1 CD69 TFAP2A TYMP CARS SAA4 SLFN5 GIMAP2 PRDM1 ZFP36L1 SLC1A4 SAMD9L RELB BAHCC1 DUOXA2 NLRP3 NLRP1 KRT6B SMAD3 YARS DDX58 ARID5B INHBA TDRD7 ISG15 INHBE SMAD7 KMO GEM NR4A3 ISG20 NR4A2 EFNA1 MXD1 H1F0 FGF19 CREB5 ZCCHC2 ARHGEF28 PLAU PLAT ETS1 RASGRP3 ETS2 DAPP1 DDX60 RASGRP1 CALD1 PDZD2 UBD ZNF385C PMAIP1 BCL9L TIPARP NFKBIZ NAV2 TNIP1 NAV3 OAS1 GPCPD1 CLK4 ETV7 CLK1 IRF1 NFKBIA BMP2 IL6 OAS2 OAS3 IRF2 RBMS2 IRF9 IRF6 IRF7 DEFB4A UBA7 MAST4 TNFAIP3 CXCL2 FUT1 CXCL1 TNFAIP2 FUT3 ADAR CXCL3 CHD2 RASGEF1B IRAK2 PDE4B BDKRB2 SCN3A CASP1 KDM6A RBM11 KDM6B IL15RA PLAUR SOD2 TIAM2 HSH2D ALDH1A3 LTB RBM43 S100P CXORF38 SPRY2 PTX3 B4GALT5 TRIB1 RTP4 LAMA2 TUFT1 THBS1 PPP2R2A RND3 USP18 NR3C1 RND1 OASL SAMHD1 DDO CYTH4 KYNU PTK2B NRCAM
Down-regulated by SARS-COV-2 infection of Calu3 cells GAMT ENDOG HEXIM1 DNAAF3 WDR83OS PIH1D1 ZFYVE21 HSPE1 PASK HNRNPM SCD ARMC6 ASB9 HSPA1A ORAI2 POLR3K RHNO1 ASF1B HSPA1B SF3B5 PGAP3 HPGD NCAPG NCAPH CLDN2 NTHL1 PSMD3 DPYSL3 CAPNS1 SAMD1 HES6 SNCA FDFT1 GTSE1 SIGMAR1 FZD1 ICMT CHST7 PLK1 WDR54 TMA7 TEX15 AIF1L THAP11 DHFR GJB1 SQLE TBL3 HOGA1 FASN SAPCD2 SFXN2 SIVA1 TSTA3 CDCA2 ANAPC15 CDCA3 DANCR POP5 NCAPG2 SDR39U1 ENO1 VPS26B TMEM97 PRKDC LRPAP1 MRPL11 MRPL12 GCSH NETO2 PRDX2 PDGFD KCNMB4 PROM2 SDF2L1 NUDC CENPV SNAPIN ANXA5 TESC EMP2 IFT122 EMP3 CDC6 TIMM21 LYZ WDR34 CENPF CENPI ADI1 PXMP2 CENPM CYB561 CENPO ANKS4B CDKN3 CENPT SLBP RPN1 PIF1 HSPB11 FAM149A ACAT2 LDHB MRPL41 PACSIN3 DLGAP5 WWOX CDKN2C AADAT ELOVL6 ZNF580 MANEAL DHRS1 ELP6 TUBB4B BDH1 NCAPD2 NCAPD3 TRMU MPV17L TMEM141 CENPA TUBA1A RECQL4 TMEM147 NSDHL TUBA1B PSMB3 IMPA2 TCTN3 AIFM1 METTL7A NEFL ANKRD54 ANXA9 MDH1 METTL7B AGR2 FADS2 FBXW9 PPP1R16A F12 C1ORF122 HNRNPAB SAP30 COPS6 MAPKAPK3 RAB36 CSPG5 DHCR7 SNRNP25 NHP2 RNASEH2C TUSC2 GPS1 SRSF2 KATNB1 UCP2 HJURP HR CDH6 BCL2L12 RUVBL2 PMPCA SPP1 ACSS2 KPNA2 SLC39A4 C21ORF58 FANCI OSBPL7 PCYT2 IGFBP6 FAM229B CYS1 LRRC45 SLC9A3R1 FANCG ACLY LSM7 KIFC1 BIRC5 TROAP PGP TMPO-AS1 PIN1 MIR31HG GMNN AK2 PHB IPO4 C1ORF53 FOXM1 TM7SF2 MUM1 CHAF1A AMDHD2 MPC2 APMAP UROD THEM6 EIF2B1 SAC3D1 AP2M1 CYB5B RFC5 EIF5A RFC2 NEB DHCR24 AHSA1 ESPL1 MCM4 MCM5 MCM6 DCTPP1 MCM7 KCNK2 TRIM54 MCM2 MCM3 MIPEP SLC25A1 NDUFB7 SHMT1 NDUFB2 PAGR1 PMVK DSEL SPR ORC1 PGK1 CCDC34 NDUFA8 MMAB CYP51A1 NDUFA4 SPAG5 PRC1 CTDSPL PKM LAGE3 SNRNP40 SYT12 ANAPC5 SLC25A10 EIF3B CTXN1 EPHB6 HDAC1 PRPS1 UHRF1 KIAA0100 TSPAN12 HSD17B10 WDR90 CDC45 MIEN1 POLR2E PRADC1 POLR2F HMG20B FBXO9 CD320 TUB BRI3BP IMP3 TM4SF4 KRT8 JMJD8 CDC20 GCAT MALL KIF20A PFN1 CALM1 ATP6V0D1 PLEKHB1 CCNF CISD3 UQCR11 HS6ST1 DPCD LRP8 AQP1 TONSL NCLN SNRPD3 RAD54L E2F1 E2F2 CPNE1 STXBP6 RIBC2 COX8A MANF MIF COMMD4 ALG1 IL17RB TPX2 SDC1 CUTA LMAN2L MARC1 COMMD9 MRPL3 C7ORF50 PTDSS1 TSPAN8 TSPAN6 ARL6IP4 TSPAN3 AGFG2 SKP2 DECR2 ZWINT NME1 VAV3 CLDN10 TPPP3 ID1 ID2 VWA1 SGK2 MPND IGSF9 DTYMK MAOB CETN2 TOP2A PCSK9 KIF12 MEDAG ACACA ERI3 DGCR6L MLEC TNFAIP8L1 CTSH TINAG CCT3 ATP6V0E2 MME MCCC1 RANBP1 PARP1 CACYBP UBE2E3 VASH1 RPA1 THOC3 C9ORF116 PGRMC1 SPC24 NDUFAB1 TRIP13 TACC3 RAMP1 SPC25 FEN1 AHCY TOMM40 GBA DERL3 MKI67 COX5B CRIP2 NUBP2 SOSTDC1 GINS2 QPCTL CA12 SCARA3 UBE2C LIG1 GINS4 RARRES2 ALYREF ARHGEF39 RPGRIP1L SDHA TMX4 FAM173B BUB1B FAM173A POLE4 KIF4A PRR15L STEAP3 ALDH16A1 IVNS1ABP CAPS PCNA NDUFB11 CHRNA5 LOC100294145 NDUFB10 AURKA IHH NRM PEBP1 HSD17B7 TYMS GALNT10 EFTUD2 CAPN8 TMEM129 TCTEX1D2 IGFLR1 MYH10 FDPS TRAPPC2L CASR KIF22 IDH2 OST4 ARHGEF19 TBCD KIF23 SMAD6 CAMKMT KIF18B TMEM237 TRNP1 SRPRB THOP1 KIF2C FGFR4 MXD3 FGFR3 VIL1 PKDCC ISYNA1 ROGDI MYL6B SLC2A8 SCGN EBP CCNB1 HADH FAM81A BCKDHB HSPA8 LRWD1 TICRR HPDL EPN3 VCAN TMEM213 RABEP2 DNLZ NDUFS3 MNS1 IDI1 HMGB3 LMNB1 DBI DPP3 LMNB2 TMEM201 SYNGR1 UPK1B NPBWR1 MFSD3 BCL7C GMPPB FAM83D RBM14 TIMM8B RRM2 H2AFX DCXR ANXA13 H2AFV LSS ANXA10 PSRC1 CAT ALDH1A2 CHDH SLIRP VDAC3 MVD GALM TELO2 MVK RERG DDC HIST1H2BK THRA SLC22A18AS CLN6 CHCHD6 NT5DC2 POLD1 POLD2 DLEU1 CRYM
Down-regulated by MERS and COVID-19 in Calu3 from two separate studies BCKDHB UBE2C IMP3 GINS4 HNRNPAB HSPE1 LYZ AHSA1 CENPF ID2 KIF20A ASF1B CDKN3 CALM1 SLBP RNASEH2C NDUFB11 CHRNA5 CETN2 SRSF2 AURKA LMNB1 PEBP1 DBI CLDN2 ACAT2 LDHB UPK1B SNRPD3 BCL7C PGK1 SPP1 ACSS2 GTSE1 DLGAP5 FDPS COX8A ICMT RRM2 ELOVL6 IDH2 KIF23 PGRMC1 LRRC45 DHFR CTDSPL SPC24 TPX2 MVD SPC25 CDCA3 TMEM97 CENPA COX5B MRPL11 TUBA1B TSPAN8 ANXA9 TSPAN3 MDH1 FAM81A
Up-regulated by SARS-CoV-2 in lung tissue from GSE147507 MX1 PCGF5 MCTS1 MX2 DNAAF1 LOC643802 CD4 MARCKS SCGB1A1 RBP4 FAR2 HNRNPC TNFSF8 CDA PI4K2B IDO1 CKLF SF3B4 SAMD9 C1ORF194 SERPINE2 C3AR1 CLDN2 TMEM71 CLECL1 GNG2 APOL6 MILR1 GNG5 LINC00639 GBP1 GBP3 GBP5 PROK2 S100A12 S100A11 GBP4 EPSTI1 F8A1 JUND HLA-DRB5 C9ORF66 BIN2 TREML4 PLBD1 ST20 SNORA48 PSME3 SNORA74B HAMP CRYAB GAPT FREM2 PADI2 MS4A7 GABARAP SPI1 GMFG HPR SAMSN1 GATA1 GLDN PLAC8 ZC3H12A BLOC1S1 HESX1 AGMO FLJ45513 LYN PHF11 SCARNA21 TET2 TIMM23 APBB1IP SULT1B1 LINC00605 C4ORF3 SIGLEC5 HCST SIGLEC7 SERPINA1 ZC3HAV1 FPR1 IQGAP1 LITAF VSIG10L TRIM5 STAP1 SH3BGRL3 P2RY13 P2RY14 SF3A2 STAT1 STAT2 STAT4 WNT7B SERPINB9 RNASE2 F5 TMEM154 GPR141 PSMA4 DHRS9 TAOK3 PLP2 PELI1 CTF1 CCL11 PIGR SNX10 IFIH1 GNLY NAMPT GCNT3 MPV17 METTL7B CCL19 JAK3 PGLYRP1 CCL18 OLR1 TLE4 CD164 TOR1B GK LOC388813 TPM4 POU2AF1 PNRC1 NEAT1 SLC9B2 CXCL10 CXCL11 CLEC4D CLEC4E CLEC4A LY6E CLC ANKRD22 S100A9 FAM8A1 S100A8 VKORC1L1 CSF3R GTF2B HP UCP2 GPR65 TNF CXCL16 CXCL17 RNU11 RNU12 BCL2L14 LOC399715 CDH2 RNF19B LAMP3 NBN CFL1 SLC39A8 CERS6 LY86 ADRA2A STK24 LCN2 TPP1 XAF1 SP140L NOP10 MAP3K13 KCNE1 NCF4 GPR84 SAT1 CYP19A1 FAM216B MMP25 AMDHD1 PIM2 MAP2K6 RPH3A MGC12916 GPX2 EIF2AK2 TRPA1 DBNDD1 FCGR2A LCP1 BCL6 BCL3 SLC26A8 LCP2 FCGR2C SFT2D1 LRRK2 LY96 TREM1 TARP C15ORF48 FCGR3A PSTPIP2 FCGR3B LBP SERF2 MROH8 CR1 PATL1 KCNH7 CHIT1 RP2 EVI2B MNDA TRIM38 SFTPA1 BPI SFTPA2 PIK3AP1 SMAP2 CCDC71L WIPF1 C1S FHL3 DDX60L ARRB2 TREML3P FCAR TNFSF13B CLEC1A FCGR1A CCL8 CCL7 CCL4 CCL3 CCL2 IGF2BP3 TRIM21 ATP7B FCGR1B ARL5B KCNJ2 TRIM22 TMEM52B SP110 IL1R2 ACSL1 RSAD2 ITGB2-AS1 PML SNTN GBP1P1 LPAR6 XRN1 COL9A2 EIF1B ALPK1 PFN1 IFITM2 IFITM3 IFITM1 FGL2 AQP9 IL2RG GLRX UBE2L6 STX11 HERC6 ACTB HERC5 SLAMF7 B2M NTNG2 CDR1 RABGAP1L HLA-J BCL11A TNFSF14 CMC2 HLA-C HLA-A HLA-B IFI44 VASP VNN2 VNN3 RGL4 CYSTM1 APOBEC3A LST1 IL1RN ANP32A DCUN1D3 IFIT5 KLHDC7B IFIT2 IFI30 IFIT1 IFIT3 FTH1 MIER1 TNFSF10 FFAR2 LGALS9 ARSE TNS4 PSENEN CCR1 SIGLEC14 NCOA7 CCDC114 NMI RHOH TFEC HBA1 LILRB2 CYP7B1 LILRB3 HBA2 KLK10 NME1 SYN1 IL1A IL1B TLR1 CEACAM3 PTPRC KCNJ2-AS1 CEACAM1 NME8 CEACAM6 RNU6ATAC TLR4 TENM1 IGSF6 DAZAP2 HBB TOP2A BRCA2 CTSS CHRAC1 CLEC7A PDZD11 CD38 CD37 FCER1G CTSE CAMP SPRR2E CTSC CD53 GCH1 HCK PARP9 FKBP1A CD48 SAA1 OR7E14P C1QC POPDC3 C1QB CSTA WAS LILRA1 PTMS CST7 LILRA5 LILRA6 ZDHHC19 SPTLC2 DMBT1 RAB8A RAC2 ENPP6 RAB8B CD55 CORIN LMO2 ZBP1 CA12 GABRP CD74 G6PD GCA HRASLS2 TYROBP PDGFRL IFI44L DOK3 CAPZA1 MYADM CD69 YPEL3 CNTN1 TFAP2A FCN1 RGS18 TPSB2 NAPA NEXN IFI6 SAMD9L STRN4 BASP1 REPS2 MGAM ATP6V0C DDX58 CYBB ISG15 USB1 HIST2H2BE MXD1 DLGAP1-AS1 ALDH3A1 SELL CDHR5 CARD16 CARD17 C5AR1 CACNA1A PSEN1 SEZ6L2 CSF2RB CPLX2 DAPP1 DDX60 HCAR3 IL18RAP HCAR2 FLOT1 FDCSP ZNF385A ABCC2 MMP8 SRGN CBX4 PILRA OLIG1 ANXA2R OAS1 OAS2 OAS3 TNIP3 IRF2 ALPL IRF9 CHI3L2 MNS1 IRF7 ZMYND12 CHI3L1 NFKBID HS3ST3A1 RTN3 GPSM3 RNU4ATAC MCTP2 YWHAE HSPB6 BCL2A1 TNFAIP6 DNAH7 LMNB1 SIRPB1 CA1 C20ORF203 CASP4 CASP5 SP140 PDE4B CASP1 CYTIP RBM11 ALOX5AP VTRNA1-1 YWHAZ SOD2 FGR AIM2 HSH2D C19ORF66 PPDPF S100P DYNLT1 LTF HIST1H2BC HIST1H2BD USP15 STEAP4 RTP4 PLEK CLEC12A CXORF21 SIX1 MSMO1 OASL ARHGDIB VSIG1 PTK2B MDH1B
Down-regulated by SARS-CoV-2 in lung tissue from GSE147507 STARD3 RBFOX2 UNC13B PRELID1 STARD9 ZNF160 WDR74 PRKAB1 DKK3 CHFR NISCH DDX39A PSMC5 PSMC3 C19ORF48 CYP1A1 PSMC1 DCHS1 ASB1 VPS28 SF3B5 PDXK AHNAK COL12A1 ADCY4 SPG7 DLL1 DCAF5 DLL4 ADCY6 TPRG1L PSMD6 MYC S100A13 PSMD2 PXDC1 ZSCAN18 KLF13 FZD4 TSPYL2 PHC2 RPL41 ZNF263 NEBL PMM2 MCAM NCAPH2 STARD10 VPS13D VPS37B TFIP11 NR1D2 FIBP BCR UCK2 QARS ITPA SIVA1 SNAI1 HBP1 MDC1 RPL3 MEPCE RRP1 XPC ENO2 GATA2 ELK3 ANAPC11 ABR C12ORF57 PPP3R1 GUCD1 GJA4 GRPEL2 HMOX1 IER2 SFN BLCAP WDR37 JUN DUSP1 SPHK1 NFATC4 NFATC2 GNL1 GNL2 ITPKC LETM1 MMP14 PXDN PQLC1 ITPKB PLEKHM2 RAPGEF3 MYZAP RAPGEF1 FXYD6 PLEKHM1 MGLL GAS6 ARPC1B AKAP17A TIMM13 CTCF LRRC32 FAM160B2 MYCT1 HMGXB3 MEF2D UTP6 FOS TTC7A TUBB4B FARP1 SERPINB6 XAB2 SPSB3 DDB1 EBNA1BP2 ADAM15 PLEKHO1 FOSB PLEKHO2 TSR1 ENG ZNF451 ZNF330 RPLP0 HEXA TCF25 HEXB NDUFA11 TCF21 SNX11 NOC2L TUBA1A SMPD4 ARFRP1 TUBA1C NDST1 CKB RRP12 BRD9 ZSWIM8 FBXW5 SEC24C USP7 SEMA4C PPP1R16B MUL1 FAM118A HIPK2 RPSA PPP1CA TUBA4A NRBP1 MADD MFNG MAPKAPK2 CSPG4 SREK1 LZTR1 SLC25A36 GOLGA8A KANK2 PHLDB1 RNMT PLXND1 ODC1 DLST GLT8D1 FAM214B SLC9A1 RNF31 CTGF GGA2 ABLIM1 ABLIM3 TUBB6 MFN2 SLC39A7 RPS5 FLNC SLC25A44 GRB10 EIF2B5 EIF2B4 LRRC47 ATP8B2 OSBPL5 AIP FBXO31 PGF PYGO2 MAFF MOB2 MAFG BCL2L1 DNMT1 ST6GALNAC6 BCL2L2 TUBGCP2 NAB2 FAM13B CUL1 EDC3 EDC4 BAG3 C6ORF106 UROD PLXNA2 MAF1 MOAP1 SLC38A5 PPP1R12A TMEM255B MICAL3 WIPI1 FAM219B CDC42BPB TMBIM1 CDK9 DNAJC7 MFAP1 NES MCM7 EIF4E2 BCAR1 SLC25A4 SLC25A3 SRCAP LMBR1L ITPR3 FOXK2 ITPR1 LBH DNAJB2 APH1A RRP7A PPP6R2 VPS54 CCDC85B DNAJB4 RALGDS ACP2 MBIP PPP1R14B DST ATRX CIRBP SELENBP1 RANGAP1 MYO1D KCTD10 CDC37 CTDSP2 EIF3G EIF3B NOP56 TSSC4 CANT1 PPP1R13B HDAC3 LUZP1 ZBTB44 TTL SEMA3F PBXIP1 HDAC7 SLC25A29 SIN3B ADAMTS2 KCTD20 UPP1 SLC25A25 MLXIP PCDH1 SLC35A4 ENTPD6 RSAD1 BSDC1 AMFR AFG3L2 CD2BP2 ULK3 CCM2 BCOR AKAP1 BAIAP2L1 EXOSC7 SEPHS1 E2F4 CCNL2 EGR1 GADD45B ARRDC2 XRCC6 GADD45G HLA-H SNHG15 RPS28 SMTN DHX29 BAP1 TCERG1 PCDH12 MPHOSPH10 PIEZO1 CTR9 TXNDC11 UBE2J2 TNS1 GOLGA3 RASSF1 INPP5A PELO NUDCD3 KAT5 MICAL1 KIAA0930 PDE2A INPP5K EPC1 ASL LCN10 TSPAN4 ATP6V0A1 STAT5A ATP6V0A2 SFTPC HARS2 FAM32A MRPS2 ID3 CC2D1B ARHGEF7 SGK1 UBXN1 ACVRL1 RRAD ZFAND2B C2CD2 STC1 MEDAG ZMYM2 ACTR1B SH3PXD2B MAP4 SH3PXD2A STK38 C1QBP QSOX1 SPRYD3 MLH1 METTL3 PRMT1 THOC6 MYO9B SGSM2 GAK TXLNA CTTN PER1 SGSM3 F2RL3 ERRFI1 ROBO3 ROBO4 FHOD1 ZDHHC7 TRAK2 CRIP1 TRAK1 HERPUD1 CXORF40B GUK1 ALS2CL SERTAD3 SERTAD1 CCT8 KLHDC3 RALBP1 PDGFRB PTCD3 RARRES2 ARHGAP29 TRPC4AP TANC1 EEF1A1 ILVBL WBP1L PPIG AMOTL1 MPHOSPH8 RAF1 INPP1 KDM1A CD82 GALNT18 NOL8 PRKY PRDM2 CIB1 NDRG1 RXRB CCND1 EFNB1 PES1 HCFC1R1 S1PR2 BAALC SASH1 FDPS PCID2 ARHGEF15 DDX56 TBCD NASP CTPS1 SMAD7 SSH1 DEXI SSH2 PAN2 ARHGAP10 SKIV2L CCDC130 SAE1 DOCK6 DDX5 LRRFIP1 NR4A1 RGS3 PODXL KIF3B CHMP1A TMEM109 CAMTA2 CYC1 ANKZF1 URGCP SUN2 EGFL7 SUN1 USP22 HSPA8 NAP1L4 ARAP3 PYCR2 PARVB RPS3A URB1 TGFBR2 IFT43 MEIS1 PEX5 NDUFS6 RASA3 ATG4B GRSF1 DOCK1 LUC7L3 B4GALT3 AGAP3 TNFAIP1 DDX42 DTX4 DPP7 H2AFJ ZC3H7B GMPPA TMEM208 ZC3H7A RHBDF1 SGTA DAPK3 TBC1D9 USF1 THAP2 TAF1 ERCC1 CLDN5 PIK3IP1 CRY2 POLDIP3 LDB1 EHMT1 USP19 RND1 SPRED1 VSIG2 MAT2A GNA12 RPS6KA2 LRIG1 SCYL1 GET4 RBM6 CYTH1
Up-regulated by SARS-CoV-2 in NHBE from GSE147507 STARD5 PRELID2 PRELID1 MX1 MX2 AFAP1 GTPBP2 PSMB9 NECAP2 FEZ1 POLR3E PSMC3 CDA ASB2 COL12A1 CWH43 NEURL1B PPP4R1 MYC ST3GAL5 PSMD2 PRSS3 GBP5 S100A12 EPSTI1 AFAP1L1 PLK3 EHD1 FERMT1 SQLE MLLT11 SULT2B1 FOSL1 GJB3 UCK2 FHDC1 PLSCR1 GJB2 GJB4 PSME2 HYOU1 CHST2 ATF4 OGDH CFB PLEK2 RRP1 PDGFB ENO2 RRP9 MRPL12 C3 LIPG GPR176 ZC3H12A ZC3H12C EPB41L3 TEPP HMOX2 IER3 LYN ANXA1 DUSP4 ANXA3 DUSP1 RIPK3 CCL20 ANXA6 FN1 TMEM171 SAMD4A TUBB2A FAHD2A MMP10 MMP13 LETM1 FXYD5 PXDN ARF4 SERPINA3 BTG3 BTG1 FLII MEG3 PQBP1 SHB CSRP1 STAP2 HSD11B1 ELOVL1 SERPINB4 SERPINB2 STAT1 IFNGR1 STAT2 IFNGR2 SERPINB1 G0S2 WNT7A SERPINB8 F3 TUBB4B ADAM19 ANGPTL4 HBEGF RNF122 IVL PGLYRP4 CRCT1 PTAFR TMEM51 FSTL3 TUBA1A MYPN PTGS2 IFIH1 PSMB8 TMEM147 TUBA1C ADAM28 TUBA1B NAMPT ADAMTSL4 ANXA9 BID IKBKE ZSWIM4 SEMA4B CSGALNACT1 BIK TOR1B TFPI2 TAP2 TAP1 NCCRP1 TICAM1 CDC25B TUBA4A CLUHP3 ZNF319 S100A7 ADAM8 DHCR7 S100A9 SLC25A37 S100A8 RHCG OSBP2 CSF3 CSF2 PPP1R15A MPV17L2 TNC TNF CXCL16 C1ORF74 TUBB3 HEPHL1 LAMP3 HARS HAS3 FLNB MICALCL MAP3K8 LDLR SEMA6A MAP2K3 IGFBP3 FST TRAF3 TNFRSF10A NFKB1 NFKB2 ACLY MAFF STK25 LCN2 CDC42EP2 XAF1 BIRC3 NCF2 UPK2 C15ORF62 ISG20L2 CORO1A SAT1 ZFP57 C6ORF223 STK10 HYI PI3 EFHD2 C1QTNF1 SEMA7A MGC12916 ITGA5 DTX3L HMGCS1 TPCN1 BCL3 ZG16B CDRT1 NDUFB8 CCDC24 C15ORF48 DRAM1 PSTPIP2 P2RY6 TRIM47 B4GALNT2 MARCKSL1 CEACAM19 SLC13A5 SMOX MYO10 PLEKHG7 BPGM RANGAP1 NAGK CDC34 MYO1C MYO1B KCTD11 C1R ALAS1 C1S ITGB3 THSD1 KIAA0100 SRM HDAC7 SLC25A28 TRIM25 TRIM21 UPP1 ENTPD3 KRT4 ACTN1 MOGS PPP2R1A EREG PML ASS1 FNDC4 LAP3 IFI27 SLPI TRIM14 SERHL2 TRIM16 EPHA2 CES1 IFITM2 IFITM3 IFITM1 GLRX UBE2L6 CARHSP1 PNP HERC6 RAB11FIP1 NUAK2 HMGN2P46 SLAMF9 E2F4 N4BP3 TNFSF15 PLA2G4C SLC11A2 TNFSF14 SLC6A14 IL36G CSNK1E IGFL1 TUBG1 IFI44 ALOX15B PARP14 PARP12 CDCP1 VNN1 TLCD1 VNN3 SMTN RAET1L SPRR1A SPRR1B IL1RN VARS CES1P1 IFI35 LGALSL PWP2 IFIT1 ICAM1 IFIT3 HELZ2 CYP27B1 MICAL2 HIVEP2 ZBED2 LGALS9 STAT5A IZUMO4 EDN1 NCOA7 TUBB VEGFC LIF RHOF AMPD3 OSMR MTSS1 NBPF14 VEGFA RHOC PDZK1IP1 IL1A TLR2 IL1B BST2 KRT17 KRT16 COPG1 RHOV ARHGEF2 CSRNP1 MAOA SDC4 STC1 KRT24 PCSK9 TGFA KRT23 NEDD9 ADRB2 SOCS3 SBNO2 DUOX2 SH3PXD2B SPRR2A SPRR2D SPRR2E CTSC IL32 RFTN1 MRPS21 PARP9 TTC9 SAA2 HDGF SAA1 TRIML2 ERRFI1 CSTB CSTA SLC43A3 AKR1B1 FAM57A SH3RF2 ARNTL2 SIPA1L1 AKAP12 HYAL1 XDH CCT7 MFSD2A CCT5 TUFM GABRP CD74 LIG3 ATP1B1 ARHGAP25 IFI44L PPIF ULBP2 HHIPL1 TYMP CD82 SLFN5 PRDM1 IFI6 RBFA SAMD9L NDRG2 RELB PDPN HSD17B2 NLRP1 RELT MICA MICB KRT6B FDPS SMAD3 DDX58 INHBA ISG15 USB1 CTPS1 PDIA5 EFNA1 MUC21 IL7R USP54 WWC1 SH3KBP1 KLHL18 PLAU PLAT SLC2A6 ETS1 LTBP2 DAPP1 TGM2 HCAR3 TGM1 PODXL KIF3C MLKL TGM5 CD99 POU2F2 MMP1 LAMB3 MRGPRX3 MSN NFKBIZ TNIP1 OAS1 MMP9 NFKBIA BMP2 IL6 TNIP2 OAS2 OAS3 RBMS2 IRF9 SNORD43 IRF7 NFKBIE IDI1 B4GALT1 B4GALT2 STOML1 MAST4 BCL2A1 NOP2 HMGB3 TNFAIP3 DTX2 TNFAIP1 CXCL2 LAMC2 CXCL1 TNFAIP2 FUT3 CXCL3 FUT2 CXCL6 CXCL5 HK2 FAM83G IRAK2 IRAK3 FAM83A MYEOV LPXN NAA10 TINF2 LSS FNDC3B PLAUR KRT75 SGPP2 SOD2 HSH2D FAM167A ALDH1A3 COL8A1 FAM50A LTB SPRY4 S100P TRIB2 ZP3 PFDN6 OTUB2 DDX28 RND1 SAMHD1 GNA15 POLB EVA1C GNA12 KYNU NRCAM ZNF169
Down-regulated by SARS-CoV-2 in NHBE from GSE147507 GBP6 CDK19 GAMT DEK SYTL5 WDHD1 DEPDC1B ADPRH ZNF397 PGAP1 ZNF395 SGMS2 ADCY1 HPGD IPP WDR63 GPR155 FLRT3 FLRT2 PLCE1 RPL17 WLS PPARGC1A EXPH5 ZNF268 C2ORF81 FZD1 LINC00672 CYP4F3 NR2F2 NR1D2 RMDN1 PBX1 BACE1 VANGL2 FAM111A TMEM99 KCNMA1 TCN1 FAT2 PADI3 FAT4 DZIP3 PRR15 CEP68 LYPLAL1 LXN ANAPC13 SCOC GNS MYSM1 RPL9 SMC2 MYLK EPS8 SMC3 ZXDA SCPEP1 SCP2 FAM110C RPL39 PRKACB ZBTB7C ZNF488 ZNF365 CHKA BBOX1 PRSS16 ADAM32 C1ORF21 CENPE CENPF SLC7A8 PXMP4 CCDC6 CENPP CEP44 TMEM106B POT1 TFCP2L1 YTHDC2 SEL1L ABHD2 TRIM2 ENDOD1 AEBP2 CYB561D1 SKA2 TMEM168 HLCS EXTL2 TIMP3 LOC440028 ZNF468 CEP55 DLGAP5 MEF2A MBNL2 MBNL3 NANOS1 MAMDC2 ELOVL4 SULF2 FMO5 PTGR2 TMEM60 CASD1 RNF128 LPCAT3 ZNF579 EBAG9 SERPINB13 ADAM23 STON2 FMN1 STON1 EFCAB7 CENPA PRSS23 LYST EEA1 NUDT12 IMPA2 GPNMB METTL7A GCNT4 ANKRD50 ZNF566 MYLIP C8ORF37 FBXW7 MAP3K2 GSR CYBRD1 POU2AF1 HIPK2 RAB30 NEAT1 SLC9A9 LY6D PDCD4 PHIP FKBP5 DSC2 DSC3 GOLGA8B PTPN4 SPESP1 NFIX PUS10 VTCN1 TUSC3 PROS1 CREBL2 FAM129A CLU CXCL14 LCLAT1 FRY FAM214A FOXO1 CTGF PPP1CC SLK ABLIM1 BCL2L11 HMGN5 RAB26 PTAR1 ANKAR UBN2 LINC00113 DTD2 PMS1 CPA4 SEMA6D FANCI SLC15A2 CERS6 OSBPL6 F2R CCDC14 CCDC15 MAF FRMD5 GGCT RGCC ERF PCYOX1 PFKFB2 FAM49A SLC26A2 FAM13C ANKRD12 C1ORF210 FGF1 OLFML2A RHOBTB3 ABHD13 SESN1 ABHD10 SESN3 EIF4EBP2 CLCA2 SRGAP3 CLCA4 ITGA4 LANCL1 SP3 UST CPE ZNF639 MFAP3 CPD MCM4 CDK1 DSG2 DSG3 AAK1 SERINC1 CNTNAP3 HMMR NREP RNPC3 DUSP10 ALAD ZNF507 DNAJB4 C21ORF91 FNIP1 LIMCH1 CPT1A DST CCDC58 ATRX TP53INP1 SYT16 SORL1 MCOLN3 CTDSPL MBOAT1 RAB15 MAB21L1 CD109 SMPDL3A TLL2 CCDC60 PRPS2 NCKAP5 FRRS1 SEMA3E PSCA FHL2 SYNE1 PTEN LRMP CXXC5 PPM1H DCAF17 THBD STK32A ZNF608 PTPRZ1 ARRB1 ZNF607 TNNI2 CEP152 PCDH7 SLITRK6 TLK1 EPHB3 ATP7A ACVR1 IFITM10 TINCR ACSL1 PLEKHA5 CRNKL1 MTUS1 RRAGD ZNF718 PPP1R3C SOAT1 MXRA5 EPHA4 MT1E KIAA1211L SATB1 VIPR1 CALML3 PRCP AQP3 SFRP1 PARD6G FRAT1 NHLH2 ZNF704 SLAMF7 PINLYP TRMT1L PLA2G4F TMEM50B ARRDC4 ANK3 SNHG8 PUM2 ACER2 PIK3R1 KLHDC8B TCHHL1 SSX2IP SCN2B VGLL3 APOBEC3C SPARC SLC35D1 CREBRF MT1X DCUN1D1 TP53AIP1 SOX2 CMYA5 MIER3 ANKH PDK4 LGALS8 APOD SOX6 STRBP TSC22D3 HEG1 KLHL4 RHOB VAV3 ANLN KITLG KRT15 VSNL1 FAM181B ANXA2P3 MEGF9 ARHGEF6 TLR3 VWA8 KPRP PTPRS TENM3 SLC44A5 CITED2 ZCCHC10 MAOB FAM43A CETN3 SLC35F5 TOP2A SLC7A11 CNTRL CTSH NFIL3 CD36 CBR1 SDCBP2-AS1 MME SCD5 CREG1 NCR3LG1 MTSS1L MPP7 RANBP6 MN1 PER3 EPGN DPY19L4 STK17B FAM171B APBA1 NRP1 CLDN23 PGRMC2 PCM1 SPTLC3 CAMK2N1 CREG2 ENPP5 ANKMY1 REV3L GEN1 TGFB3 NPNT DENND4C LMO4 RARRES3 ATG9B ARHGAP29 TMEM131 TMEM135 GNPDA1 FAM161A POLE2 SCNN1B WDFY1 LRP11 CAPS CD86 LOC100294145 HFE LOXL4 FBLN2 MANEA CCND2 CAPN7 HSF2 HSD17B3 TBC1D15 SASH1 KRT6C AASDHPPT SMAD5 MANBA CCDC138 CKAP2 SYT8 CCNA2 ALDH3A2 DLG2 GCLC APPBP2 CDH10 ALDH3A1 MAP7D2 TCF4 MUC20 FGFR2 CCDC121 CCDC126 GXYLT1 KLHL13 ESPN FAM198B SYDE2 CCNB1 FPGT NMRK1 MUC16 IL6R PRODH EGFL6 MUM1L1 CAV1 GALNT1 GULP1 BMP7 BMP4 MIR221 HOOK1 RBM20 FAM84A GPSM2 TSEN15 NID1 UBA5 LMNB1 PIK3R3 TROVE2 PHTF2 IRF2BPL AGPAT5 DBP GHR LOC286437 BLNK MAN1A2 EYA1 DYNLT3 LGI3 LCA5 ZNF180 DCK WEE1 TIAM2 MLPH LMBRD2 TBC1D5 PPDPF TBC1D8 FAM131B PDE5A SSBP2 CHURC1 CAMK2D TNKS2 PKD2 ADD3 SENP8 UFL1 NT5DC3 PALMD GNA13 MAN1C1 DIP2B
Up-regulated by SARS-CoV-2 0.2 MOI in A549 from GSE147507 C2ORF74 MX1 GLCE WDR75 DEK BBIP1 IFT81 REV1 DKK1 MED6 LARP7 WDHD1 RBP7 SARNP RBP4 FDX1 POLR3G RPL22L1 HNRNPD FILIP1 NYAP1 EHF SAMD9 STAU2 PON2 C4BPA CLDN1 APOL6 FLRT3 MXI1 GBP1 SNORD76 GBP3 MTA3 APOL1 BATF2 PRPF38B TIGD7 PLK2 KLF10 DNTTIP2 MASTL C9ORF64 SULT2B1 PLSCR1 MSL3P1 PSME2 NOSTRIN CEP63 PSME1 PTP4A1 CFB CFH WDR43 RPL9 HIF1A C3 SMC3 C5 GJA1 LTA4H IER3 PNPT1 ANXA3 RDX PHF11 CCL20 GABRA5 TESC TCP1 FN1 CP GNL3 GNL2 MMP10 PIGK PAM NUP62CL SERPINA3 BTG3 CATSPER2P1 ZC3HAV1 ZNF518B MRPL33 HSPB11 LDHA PITPNA-AS1 MIOS CEP55 ZNF467 TIGD2 HSD11B1 STAT1 IFNGR1 ELOVL6 STAT2 MBD2 STAT4 KTN1 ADAM10 PTGR2 SERPINB7 PSMA6 PSMA4 USO1 NUCB2 PLIN2 STON1 FSTL1 ING2 PTGS2 IFIH1 PSMB8 ZSCAN30 NAMPT RIOK1 PRAME ZNF326 PAIP1 OLR1 PAIP2 PTPN2 USP8 SUPT16H ZNF680 TFPI2 USP3 TAP2 TAP1 MSH2 CLEC4E C1ORF116 HAT1 TEX9 MSH6 ZNF558 ZFP28 ZNF430 SLC27A2 PHLDB2 CSF3 CCNT2 PLOD2 GTF2E2 BZW1 TANK HSP90B1 RNF31 RBBP6 CDH1 HAS2 GTPBP10 LAMP3 SLC39A8 SLC16A3 MAP3K8 CCDC18 FANCI LRRC49 IGFBP1 IGFBP3 FRMD3 MYD88 MLXIPL LCN2 SMS XAF1 SP140L MNAT1 FAM49B UQCRB CUL3 AK3 CREM SAT1 EFEMP1 TPR DHRS4-AS1 THEM4 PI3 BRIX1 EIF5B KCNJ6 HSP90AA1 DTX3L EIF2AK2 EIF2AK1 ELAC1 PTPN12 NEMF MARCH7 CYB5A DNAJC2 DNAJC8 DNAJC7 LOC374443 PIR CEBPZ SERPINI1 NSRP1 SNAP25 SHOX2 MCFD2 FAM114A2 SYCP2L GMPS CBWD2 APIP MLLT3 NLRC5 DUSP16 C15ORF48 ORC2 PGK1 ZNF624 EIF4E B4GALNT4 SMIM13 ERVMER34-1 NOP58 REC8 LINC00473 CCDC58 ERAP1 SELENBP1 DNAJA1 EHBP1 SUCLA2 MYO1B EIF3J ESF1 MAP3K14-AS1 BLZF1 SEMA3A ITGB1 C1R C1S HDAC2 FHL1 DDX60L THBD EXO1 SUMO2 SUMO1 PTER FIP1L1 CCL5 TRIM25 TNNI3 SLITRK6 CTNNAL1 TRIM21 KCNJ2 NCK1 UGT1A7 SSB SMARCA1 SP110 ANKEF1 PLEKHA4 ACSL4 EREG SMARCA5 PML CCAR1 ASS1 LAP3 TMCC1 IFI27 SLPI SUB1 TRIM14 ANP32E IFITM2 IFITM3 SP100 IFITM1 FGL1 WBP4 TRANK1 ITIH2 UBE2L6 FLJ37201 HERC6 HERC5 HERC4 CHORDC1 IFI16 CCDC77 B2M GINM1 XRCC4 EAF2 PLA2G4A HLA-C PAPPA HLA-B IFI44 PARP14 HLA-F PARP12 CDCP1 PARP10 INTS6 DHX29 VEZT LTV1 PDE1A IFI35 IFIT5 IFIT2 IFIT1 ICAM1 GSPT2 IFIT3 GOLGA4 HELZ2 CCDC91 NUDCD1 PPAT PDK4 TNS4 EDN1 SLC10A7 CCDC117 NCOA7 TSC22D1 NMI AP3B1 RHOB IL1A IL1B BST2 P4HA1 THEMIS2 ID1 KRT18 DMC1 ALDOC SLU7 SUZ12P1 EBI3 STC1 C2CD4C CTSS ZMYM2 HLTF LARS MAP2 TM4SF20 SOCS6 MAP4K3 MMD IL32 MTX2 NFYB CCNYL1 SUSD2 THOC2 CACYBP TTC1 KIN THOC7 PARP9 STK17A CMPK2 SAA1 ERRFI1 PTGER2 FKBP14 AKR1B1 PRIM1 ZDHHC6 TXLNG PNMA2 RSRC2 CCT8 AKAP10 ANKMY2 CD55 RARRES1 CA11 MORC4 PTCD3 CPSF3 CWC15 CNOT10 TMEM130 DPM1 ARHGAP24 IFI44L ZNFX1 SHQ1 SLFN11 DNAJB11 PPIG STEAP1 PCNA TYMP ZCCHC7 ODF3B HSD17B4 BCCIP IFI6 SAMD9L NOL7 TMEM123 TAF1D CWC22 DNAJC21 BMPER MORC3 PDIA3 USP48 DDX58 SYT1 USP44 CKAP2 TDRD7 ISG15 DDX50 TBCA EIF2S1 ISG20 SNORD26 STT3B TAB2 DDX5 LGALS3BP DDX1 CACNA1G DDX60 FAM162A USP53 ZC3H15 MKKS KRT222 PAICS HSPA5 SPATS2 CBX1 HSPA4 OAS1 GPCPD1 NFKBIA IL6 OAS2 CPS1 NUP54 OAS3 IRF9 MNS1 IRF7 FAM72D GRSF1 LUC7L3 SMIM3 NNMT UBA7 BCL2A1 PSIP1 TNFAIP3 CXCL2 CXCL1 ADAR CXCL3 RPAP3 RPF1 CXCL5 NT5C2 CASP8 LLPH CASP7 AOX1 PDE4B SNAPC1 CA9 PDLIM5 FGA RBM39 FGB FGG ZNF184 KCTD6 SOD2 U2SURP GREM1 C19ORF66 FAM131B TRIB1 USP16 ERCC6L DDX21 PPP2R2A USP18 OASL SAMHD1 EVA1C KYNU BNIP3
Down-regulated by SARS-CoV-2 0.2 MOI in A549 from GSE147507 CHGA PRELID1 WDR83OS AHNAK2 SOX13 ZFYVE26 GRIN2C COMTD1 PTRHD1 EML5 RNF224 COL1A1 KIAA1217 DDX39A MEX3B CAPN10 TOLLIP TRIP6 TEP1 WDR81 VIM CDK10 ORAI2 CYB5RL DUS3L ASB1 PDXK JRK AHNAK RETSAT RPL10 AP5Z1 SERPINE1 HERC2P3 TESK2 ADCY5 LOC284454 DLL4 TPRG1L NEURL1B ASNA1 RRN3P3 KCNQ1OT1 PREX1 IGLON5 RALY NXNL2 VPS18 DMPK PLK3 SLFNL1-AS1 SLC16A13 NR0B1 VPS37C PDZK1 FA2H TBL3 TCN2 PRKAR1B FASN SAPCD2 FAT1 ITPA ATG2A NOX1 CHST3 HOXB6 TSTA3 RNPEPL1 IPO13 DANCR MEPCE TMEM91 TRIOBP FAM110A FASTK FDXR HMOX1 SFN PRIMA1 LOC100132356 MIR600HG MRPL23-AS1 PTCH2 HOXB-AS3 TET3 WNT9A SIRT7 KIAA1024 FAM102A ITPKC GJD3 MZT2B INF2 GPRC5C MZT2A NCOR2 ADI1 GNPTG AGO2 PLEKHM1 PHF19 ADA FLII ABHD4 KCNC4 ABHD2 CLTB IQGAP3 CYB561D1 MEG9 BBC3 DDA1 PANX2 AACS SHH C16ORF58 TIMP2 ZNF469 CEMP1 ATXN1 HMGXB3 AP1M2 TPRA1 MEF2D CDKN2C APC2 MBD3 CA5BP1 SLC39A13 MRPL54 ADAM19 COL4A2 A4GNT COL4A4 ZNF219 ENG DSCAML1 ZNF575 MTMR11 TGFB1I1 HTT GLI4 LFNG SMPD3 SMPD1 MIR22HG TSPO NUDT17 HS1BP3 P4HTM NUDT14 MAP3K3 RNF44 FBXW9 CORO2B BTBD9 FBXO10 LRFN4 SLC9A3 COPRS ACAP3 PINK1 MFNG ITGA11 RNF185 TCTA SQSTM1 TRABD2B UCKL1-AS1 PHLDB1 PPP1R15A URM1 LINC00482 KATNB1 LOC100289230 CTAGE7P NPAS1 BEST3 ACAP1 LOC100129534 CDH4 NACC2 SLC16A8 NPTX1 NDOR1 STX3 STOX2 PSKH1 PLEKHJ1 FLJ42627 ZNF785 ATP9A CCDC17 HPS1 DYRK1B TNFRSF10D KCNAB2 METRN CYP4F11 ESPNL SNORD18C FRMD8 METTL22 DGKQ MAFG BCAT2 MAP3K14 MAZ GLUD1P3 MSI2 ARHGAP1 WASH2P SAT2 CORO1B RHOBTB2 PCDHAC1 SNN MPC1 AMDHD2 PMEPA1 ANKRD11 SLC38A7 FBRSL1 BMF ZNF524 ATP6V0E2-AS1 SH2D5 SAC3D1 PTPN18 PRRT2 PRRT3 OSGIN1 NPC1 PTPN14 BAIAP2 MARCH4 CDK4 IL3RA TNRC6C L3MBTL1 GGT8P NLGN3 ASH1L-AS1 NDUFB2 FOXK1 RAP1GAP ADRA1B LBH DNAJB2 ADAMTS15 KLC4 P2RY2 DVL2 ACP6 DGCR9 AMH FNIP2 PGPEP1 SLC37A4 SLC36A1 COL27A1 PLEKHG6 PVRIG BOLA1 MGAT4B KCTD15 HDAC5 MDGA1 SRRM2-AS1 DYSF SYNE1 LENG8 CXXC5 SYNE2 TSPAN10 REPIN1 POLR2A HECTD3 LOC100287036 NAGLU PRADC1 HMG20B CNNM3 UPP1 EPHB3 UNKL SLC25A25 MLXIP SLC35A4 KRT4 IFITM10 ADHFE1 PLEKHA6 PLEKHA7 PEX10 NBEAL2 MAPK8IP3 MFSD12 GCAT GSTZ1 SFRP5 LOC646762 NEURL3 RRAGD ULK3 NSMF ULK1 MXRA8 OBSL1 TLN2 STX1B ATP6V0D1 ZNF324B WBP2 TAGLN CERK PPP1R3B LRP3 BCRP3 HERC2 HERC1 NIPAL4 CHAC1 SUSD5 CCDC78 NUMBL SRPK3 SLC34A3 PLA2G4C VASN ARFGAP2 VAT1 STAG3 WNK1 IGSF9B TAGLN2 ADCK5 TTLL12 FBXL8 PEMT NECAB2 BEX2 ART5 TRPM2 KLHDC7A ANPEP INPP5E ANKH ZBED1 CEP170B TSPAN1 AKR1A1 RHOD ZHX2 VEGFB CLDN14 SGK2 RTN4R NOXO1 OTUD7A NEU4 ACTR1B C10ORF95 SLC22A18 SH3PXD2A NEU1 DGCR6L FAM43B SNX8 LMCD1 CTSD PDRG1 ATP6V0E2 VASH1 THOC6 GAL PACS2 CARS2 RYR3 MEGF6 SYNM PAPLN DCST2 PEPD CAMKK1 AKAP13 PODNL1 MNT CILP2 LOC646214 SPTAN1 KIRREL3 CHRNB4 TRPV1 PCDHA12 PCDHA11 KLHL21 DOK3 GNPDA1 MZF1 NUPR1 FAM161B TP53I3 SCNN1D FAM173A POLE4 ISCU FIZ1 SPNS1 YPEL1 COL20A1 ALDH16A1 NDRG4 CRTC1 SLC1A5 CIB1 LOC100272217 LMNA PRSS53 RAB40A RAB40B TAF1C TMEM129 EP400 SREBF1 ARHGEF18 GEM EFNA2 MATN2 CARD14 MXD3 MXD4 PXN SLC2A1 RPS19BP1 PLCXD2 ETS2 PLB1 UAP1L1 PODXL FAM174B ALDH3B1 SIRPA MSC PRODH MIR3176 ATP13A1 SETD1B CYHR1 NAV2 GGN COQ4 CLCN7 FLJ16779 LPIN1 RABEP2 COL7A1 ASMTL-AS1 QRICH2 PLEC COPE LTB4R PMF1 SMIM5 ABCB6 ARHGEF10L HAPLN3 MARVELD1 SLC7A11-AS1 IRAK1 TMEM208 MYEOV LONRF2 WNT4 DACT1 CAD LSS ARID1B KCTD7 EEPD1 TRAPPC6A TBC1D7 IGDCC4 DDIT3 TRIB3 TELO2 MVK PKD1 RERE DCTN3 MVP PKD1L2 CLN8 NADSYN1 FLCN SPRED3 NT5DC2 C19ORF71 PCDHGC3
Up-regulated by SARS-CoV-2 2 MOI in A549 from GSE147507 HOMER2 SYTL2 C20ORF194 ROCK1P1 GTPBP2 L1CAM ABCA10 ADPRM MTHFD2 FEZ2 GPD1L NHLRC3 NGEF OPTN TES ZNF277 ATF3 SERPINE1 COL12A1 SERPINE2 TFPI CLDN1 APOL6 EPB41L4A-AS1 TMEM67 MSANTD3 AKT3 MXI1 ZDBF2 CHST11 PXDC1 GBP1 CYP1B1 GBP3 EXPH5 GBP2 GBP4 ZNF146 PRKCH KLF11 ABCA1 GABARAPL1 DNAH17 SLFNL1-AS1 PRKCE NR1D2 EIF1 FOSL1 KCNMA1 HOXB9 LYPLAL1 CFB C9ORF72 ZBTB8A LINC00662 PLEK2 PDGFB PDGFA WDR41 ALKBH8 ZNF25 PPFIBP1 C3 GJA1 ZC3H12C LIPH NKX3-1 IER3 DUSP5 JUN ANXA3 DUSP1 LOC100268168 CCL20 SAMD4A MMP10 PXDN CCDC90B COL22A1 GAS5 GARS SERPINA3 BTG1 GUCY2EP PEAR1 TMEM168 ATXN3 RRAS2 TCP11L2 SERPINB4 IFNGR1 IFNGR2 SNX24 ELOVL7 SERPINB8 DHRS2 SERPINB7 CLIP4 TMEM156 TMEM159 ADAM17 C6ORF48 NDUFA4L2 TOM1L1 MAP1B CLDND1 ZNF697 TIMM9 C11ORF54 PRKAG2 FSTL1 HSPA13 IFIH1 FADS3 ZNF449 THAP9-AS1 OLR1 CSGALNACT2 PTPN2 PHLDA1 AGTPBP1 PPIL3 ANKRD28 GK SARS VRK2 FOXP1 CLEC4E SLC9A7 PSAT1 ADM2 ZNF558 AJUBA SLC25A37 GOLGA8B RHCG PPP1R15B ALDH1L2 PHLDB2 CSF2 CSF1 CEP120 PPP1R15A FAM129A THG1L BEST1 FGD4 FGD6 CDH4 ABLIM3 CDH2 GTPBP10 FLNB SLC16A9 GRB10 SLC16A4 KCNH1 SLC38A2 SLC38A1 F2R TRAF1 TNFRSF10B IBTK NFKB2 FBXO32 MAFF FRMD6 SPIRE1 BCAT1 SPRN BIRC3 RSL24D1 BEAN1 TMEM167B FAM228B FGF2 SAT1 EFEMP1 GLIPR1 SALL4 SESN2 CPAMD8 ABL2 LOC100130691 TNFRSF9 MBP C1QTNF1 SEMA7A ZNF641 GFPT1 ITGA5 DTX3L ITGA3 GFPT2 ITGA2 ASNS PTPN12 NPC1 FOXL1 MARCH4 CDK7 IL3RA LOC374443 DSG2 OGT SERINC1 CPM NFE2L3 ZC3H6 FAM149B1 RASGRF2 C3ORF52 ITPR3 FHIT UFSP2 CYR61 C15ORF48 DRAM1 DRAM2 KDSR LBP TRPC1 B4GALNT2 DNAJB9 LOC100506801 KIAA0319 ZNF621 LIMCH1 SMOX ERAP1 KIAA1549L TM6SF1 ZFP90 KLF9 KLF7 KLF6 TXNIP TRIM36 CLEC2D PLEKHG1 EIF3E ITGB1 C1R C1S CEBPG FHL1 SEMA3C DDX60L CCL5 IGF2BP2 ITGAX CCL2 ITGAV LRRC8C FYN CTNNAL1 UPP1 EPHB2 UGGT2 CCDC50 EIF2A NCK1 PCDH1 ACVR1 IFRD1 TTC39B EREG RUNX2 ASS1 THEG RRAGD RRAGC LACC1 RTCA UHRF1BP1 RIN2 ALPK1 TMEM87B ANTXR2 NTN4 MTHFD1L NIPAL4 CHAC1 STK38L APBB2 N4BP3 SNHG1 GADD45B GADD45A PLA2G4C ARRDC4 SLC6A15 RAB39B SNHG8 HLA-B ANK2 IL17RD EXT1 PARP14 PARP11 OCLN CDCP1 BEX2 CREBRF ICAM1 MT2A CYP4V2 HIVEP1 KIF21B IL11 IL15 NCOA7 TSC22D3 HEG1 LIF AMPD3 SORCS2 KLHL5 IL18 TUBE1 OSMR VAV1 VEGFA PDZK1IP1 SUPT3H PTPRE IL1A CLDN12 ARHGEF2 CLIC4 EBI3 SDC4 ZFAS1 STC2 TGFA VLDLR SLC7A11 CTSS SOCS3 UGCG MAP1LC3B KIF1A MAP2 CLTCL1 DPH5 PHGDH PCK2 SOCS6 IL32 QPCT UBE2E1 GFRA1 PARP8 PDP1 DLC1 XPOT NEDD4 F2RL1 TCEA1 CD47 MAPRE3 ANKRA2 ECM2 ICA1 ARNTL2 AKAP12 XDH LOC100506548 CD55 UBE2H KIRREL3 MID2 SPOCD1 AXL TMX3 COL5A1 CCPG1 CHMP4C ULBP1 SCG5 CD68 YPEL5 RAI14 GALNT12 CARS ZCCHC7 BTF3L4 SLFN5 ZFAND1 ASAP2 NALCN SAMD9L RELB CLGN DOCK11 NT5E TAF1D KIF5C BMPER MEIOB SMAD3 SYT1 NABP1 RAP1GAP2 INHBE EIF2S3 CCNB1IP1 AZIN1 MXD1 DLG3 H1F0 CD8A CAPRIN2 LINC00707 CREB5 MATN3 AKNA PYROXD1 SH3KBP1 PLAU HTRA1 SEL1L3 ETS1 RASGRP2 LTBP2 DDX60 PODXL NMRK1 MAN2A1 PMAIP1 USP53 SBF2 TIPARP VDR SRGN LAMB3 SMURF2 HMGA2 NAP1L1 TNIP1 NAV3 IL6 JMY R3HDM2 RBMS3 KDM5B TSEN15 MCTP1 BCL2A1 LAMC1 TNFAIP3 CXCL2 FUT1 LAMC2 CXCL1 PLD1 CXCL3 MOSPD1 CXCL5 HRH1 SYNGR3 IRAK2 AOX1 CA8 KDM6B LONRF1 CCBE1 ZNF185 SWT1 DDX10 PLAUR SOD2 GALC FMNL2 GREM1 UFM1 THAP6 NPHS1 ALDH1A3 DDIT3 PDE5A PTX3 DAAM1 CHURC1 TRIB3 SCARB2 TUFT1 CRMP1 ATP2A3 DMKN RND3 SLC4A7 OGFRL1 CBS CLMP LRIG1 HORMAD1 POLI CYTH1 DUS4L
Down-regulated by SARS-CoV-2 2 MOI in A549 from GSE147507 HEXIM1 DNAAF3 PASK DDX39A HNRNPL WDR81 HSPA1A C19ORF47 ASF1B RABL6 HSPA1B NCAPG IER5L NCAPH WDR62 CLDN2 TOB1 SPDEF NTHL1 PSMD3 RRP36 AP2S1 VPS18 FDFT1 GTSE1 SAMD11 ICMT PLK1 NR2F1 NR2F6 HCFC1 DHFR FAM111B TBL3 FASN SAPCD2 BIN1 VAMP1 SFXN5 EZH2 PRR15 HOXB6 POP7 GLDC CDCA3 TTYH3 CDCA5 DDX12P TMEM97 ENO3 CHTF18 RAVER1 FASTK NUP62 FDXR MYO18A MYBL2 RHBDL3 SDF2L1 TCF19 SNAPIN LYPLA2 JUP ANXA6 EMP2 IFT122 CDC6 WDR34 TAF6L MMP15 INF2 FAM222A ADI1 INCENP CENPO ANKS4B PHF19 SLBP PIF1 NOC4L TMEM160 SERPINA6 ACAT2 TK1 RHPN1 PACSIN1 AP1M2 ATAD2 CDKN2C CLUH DGAT1 MBD3 TUBB4B TUBB4A BAAT ADAT3 TAOK2 APEX2 ZNF219 NCAPD2 CKS2 PKN3 NCAPD3 TIMELESS CACTIN MYRF ZNF574 LRRC14 PIGQ TMEM53 NOC2L UNG PRSS23 PDF SMPD4 RECQL4 HLA-DMB NSDHL TUBA1B OLFML3 CKB ANKRD54 METTL7B AGR2 FADS2 ZNF444 RNF43 USP5 PPP1R16A DIO2 PCDH9 CDC25A RNF40 DISP2 TUBA4A SLC25A39 C1ORF116 HAT1 ITGA11 LY6E DHCR7 SNRNP25 KANK2 RAB1B ZNF672 RNASEH2C PLXND1 SRRT GPS1 SRSF2 KATNB1 UCP2 MPV17L2 HJURP CLU BCL2L12 TUBB6 NACC1 RAB26 RUVBL2 NPTX1 SLC39A3 NDOR1 ZNF787 KPNA2 C21ORF58 WFS1 PCYT2 FANCA METRN POLRMT LRRC45 SLC9A3R1 FANCG HNF1A-AS1 PITPNM1 KIFC1 BIRC5 ERF TROAP PGP MAP3K11 SLC27A3 MAD1L1 DNMT1 TMPO-AS1 PIN1 RAD9A LRRC59 ZNF771 GMNN CNP PHB IPO4 PKMYT1 FOXM1 HSPBP1 VTN EDC4 CHAF1A CHAF1B MPC2 BAG1 C1QTNF6 THEM6 MAP2K6 CYB5B RFC5 GPX2 HSP90AA1 RFC3 HMGCS1 NEB DHCR24 AHSA1 WRAP53 ESPL1 MCM4 MCM5 MCM6 SP9 MCM7 MCM2 MCM3 KCNK5 SLC25A1 AARS2 GTF3C5 NDUFB7 SHMT1 MCM10 ADRA1D C1ORF159 EFCAB12 RAP1GAP GTF3C1 RHOT2 PPP6R1 MROH6 SPR MGAT5B ORC1 CCDC34 AMH BCAS1 DGCR6 NTRK3 GADD45GIP1 MMAB MBOAT7 RNF26 NDUFA3 SPAG5 HAUS5 CABLES2 FBXL19 PRC1 SELENBP1 TBX3 DNAJA1 TST DTL SLC25A11 SLC25A10 ANAPC2 EPHB6 CDCA7L UNC93B1 UHRF1 TCIRG1 KIAA0895L CXXC1 U2AF2 ZBTB45 CXXC5 NRGN USH1C FOXRED1 REPIN1 WDR90 CDC45 EXO1 POLR2E PRADC1 TRIM26 TRIM28 EPHB3 INSL4 POLR2L CD320 BRI3BP SLC35A4 ACTN4 IMP3 ESCO2 KRT4 SLC12A2 TM4SF4 NBEAL2 AP1B1 KRT8 JMJD8 CDC20 MTUS1 SFRP4 KIF20A PFN1 ATP6V0D1 SSNA1 SLC23A1 CCNF LRP3 HS6ST1 TONSL DHX30 NCLN SNRPD3 RAD54L E2F1 PEG10 ZNF703 EXOSC4 E2F7 E2F8 HABP2 INTS1 XRCC3 PAQR4 MIF ALG3 TUBG1 IFFO2 TPX2 POR SNHG10 RNPS1 INTS5 NOL12 FBXL6 APOBEC3B MAGED1 MRPL4 KLHDC7A SNRNP70 CCDC96 PDK2 AMPD2 ZWINT MLF2 VAV3 TPPP3 KRT18 RPUSD1 TECR CALR DTYMK MRPS12 SUV39H1 PCSK9 GPAA1 KIF12 KHK DGCR6L HNF4A SCAND1 TM4SF20 MPP2 CBR1 ATP6V0E2 CACYBP VASH2 ZDHHC12 THOC3 SPC24 CCNE2 TACC3 SPC25 LLGL2 FOXA1 FEN1 TOMM40 SYNM MKI67 FCGBP NUBP2 HYAL2 NUSAP1 GINS2 GINS1 SCARA3 LIG1 SCARA5 CPSF1 GINS4 ALYREF ARHGEF39 NOSIP SHPK SDHA ALDH4A1 BOP1 DOK4 UBE2S UBE2T GPRIN2 PRR15L ALDH16A1 PCNA GEMIN4 AURKA PEBP1 TYMS PHRF1 AURKB ZFP36L2 RASD1 CCND3 GPC1 CASKIN2 MYH14 EMC6 GAS2L1 FDPS SREBF1 ATP6V0C KIF22 DDX54 TBCD INHBB UPK3B KIF18B RADIL THOP1 KIF2C FGFR4 MXD3 ARHGAP18 CACNA1G HOXB13 CPLX2 ETS2 NR4A1 CNN3 TMEM104 PDZD3 EBP CCNB1 CLSPN CHMP1A MUC13 TMEM109 HSPA8 CBX2 AXIN2 IRF2BP1 TICRR HPDL GALK1 POLA2 CPS1 PDE3A CUEDC1 IDI1 ABCB8 LMNB1 NCALD PIK3R3 DBI LMNB2 TMEM201 MFSD5 MFSD3 GMPPB ISOC2 FAM83D RBM14 DACT2 RRM2 CLEC11A H2AFX LSS THAP7 CAT RBM42 MVD TELO2 AURKAIP1 MVK ERCC6L THRA BRAT1 DBF4B EHMT2 EMC10 SLC4A2 SLC22A18AS NT5DC2 IGFBPL1 POLE POLD1
Up-regulated by SARS-CoV-2 2 MOI in Calu-3 from GSE147507 MX1 MX2 ROCK1P1 GTPBP2 PSMB9 L1CAM SYTL3 KIAA1217 MTHFD2 CYP1A1 IDO1 OPTN ATF3 SAMD9 SERPINE1 BACH1 BACH2 CH25H APOL6 IFNL1 IFNL3 IFNL2 TP53INP2 GBP1 CYP1B1 HES1 GBP3 ST3GAL1 GBP2 IFNL4 GBP5 APOL4 GBP4 EPSTI1 ZNF267 APOL3 SDS BATF2 JAG1 KLF10 NR1D1 NR1D2 FOSL2 LATS2 FOSL1 PLSCR1 ATF4 BCL10 PDGFB GATA6 GATA3 SAMSN1 C3 RNF213 NUB1 ZC3H12A ZC3H12C NKX3-1 IER3 C5ORF56 DUSP5 LYN PNPT1 JUN GSDMB CCL22 PHF11 DUSP1 CCL20 SEC16B NFATC2 SAMD4A DUSP8 ITPKC SLC7A5 MMP13 CYLD ZEB2 BHLHE40 BHLHE41 JDP2 GARS SERPINA10 ZC3HAV1 KIAA0040 BBC3 TRIM5 C6ORF58 RIPK2 SERPINB2 ZNF462 STAT1 STAT2 IFNGR2 SERPINB1 G0S2 F3 SERPINB9 SERPINB7 DAB2IP SPSB1 FOSB NDUFA4L2 MAP1B PELI1 ZNF217 HBEGF SRFBP1 CDKN1A PTAFR TMEM140 FSTL3 PTGS2 IFIH1 PSMB8 C18ORF25 NAMPT RIOK3 RICTOR KRTAP2-3 ZSWIM4 JAK2 ZBTB10 TAP1 PNRC1 TICAM1 NEAT1 CXCL10 CXCL11 PSAT1 TRAFD1 ADM2 AJUBA SLC25A37 PPP1R15B ALDH1L2 PHLDB2 CSF3 CSF2 CSF1 PPP1R15A TNF FOXO3 C6ORF132 FOXO1 CTGF BCL2L14 BCL2L11 FGD6 ZFP36 RNF19B LAMP3 FLNB MAP3K8 MB21D2 SLC15A3 FST TRAF1 TNFRSF10B NFKB1 NFKB2 FBXO32 MAFF RCAN1 MYD88 XAF1 SP140L BIRC3 MAP3K13 ANKRD33B CD274 NCF2 IRS2 CDC14A SAT1 C6ORF223 C6ORF222 ABL2 PIM1 C1QTNF1 SEMA7A DTX3L EIF2AK2 KCNJ15 CFLAR ASNS MARCH4 BCL3 DSG3 SP8 TRIM56 NFE2L3 BCAR3 NFAT5 GMPR NLRC5 DUSP16 CYP3A5 CYR61 C15ORF48 DUSP10 DENND3 DNAJB4 PHACTR4 RREB1 SKIL PLEKHG7 KLF4 KLF6 TXNIP TRIM38 SEMA3A C1R MIR155HG C1S ZBTB43 DDX60L PPM1K ITGAM HDAC9 TNFSF13B DHX58 CCL5 TRIM25 CCL2 FBXO6 TRIM21 TRIM22 SP110 LRRN3 EGOT RSAD2 PLEKHA4 TTC39B EREG PML GBP1P1 NEURL3 LAP3 XRN1 CTH TRIM14 UHRF1BP1 SIK1 DCP1A IFITM2 LRP2 SP100 IFITM1 TRANK1 UBE2L6 HERC6 HERC5 RAB11FIP1 NUAK2 PARD6B HMGN2P46 IFI16 FLT3LG CHAC1 CCNL1 N4BP1 EGR1 APOBEC3D EGR2 APOBEC3F APOBEC3G TNFSF15 GADD45B GADD45A PLA2G4C ARRDC3 ARRDC4 NUAK1 IFI44 PARP14 HLA-F CNKSR3 PARP12 PARP10 LST1 CREBRF IFI35 IFIT5 KLHDC7B WFDC5 IKZF3 IFIT2 IFIT1 ICAM1 IFIT3 SOX4 MT2A HELZ2 HIVEP2 EPC1 HIVEP1 KIF21B SOX9 TNFSF10 IL12A TP53BP2 RIMKLB LGALS9 SYNPO EDN1 EDN2 WARS TSC22D2 IL15 NCOA7 BTN3A1 NMI LIF TUBE1 VEGFA IL1A IL1B BST2 DEPDC7 CEACAM1 THEMIS2 KRT17 KBTBD2 CD22 TLR3 CSRNP1 CSRNP2 CITED2 SDC4 SECTM1 STC2 TMPRSS3 KRT23 NEDD9 ADRB2 TNFRSF11B CX3CL1 PTPRH DUOX1 DUOX2 UGCG GSE1 ANKRD1 PCK2 PARP8 PA2G4P4 PARP9 PDP1 B3GNT7 DLC1 PER1 NEDD4 B3GNT5 CMPK2 ERRFI1 AMIGO2 PTGER4 AKAP12 SERTAD2 RSRC2 IFNB1 HDX FILIP1L TBC1D22B RAB8B ZBP1 TGFB2 HRASLS2 LIFR VCAM1 IFI44L ZNFX1 ULBP1 AMOTL2 OTUD1 CD69 TFAP2A TYMP CARS SAA4 SLFN5 GIMAP2 PRDM1 ZFP36L1 SLC1A4 SAMD9L RELB BAHCC1 DUOXA2 NLRP3 NLRP1 KRT6B SMAD3 YARS DDX58 ARID5B INHBA TDRD7 ISG15 INHBE SMAD7 KMO GEM NR4A3 ISG20 NR4A2 EFNA1 MXD1 H1F0 FGF19 CREB5 ZCCHC2 ARHGEF28 PLAU PLAT ETS1 RASGRP3 ETS2 DAPP1 DDX60 RASGRP1 CALD1 PDZD2 UBD ZNF385C PMAIP1 BCL9L TIPARP NFKBIZ NAV2 TNIP1 NAV3 OAS1 GPCPD1 CLK4 ETV7 CLK1 IRF1 NFKBIA BMP2 IL6 OAS2 OAS3 IRF2 RBMS2 IRF9 IRF6 IRF7 DEFB4A UBA7 MAST4 TNFAIP3 CXCL2 FUT1 CXCL1 TNFAIP2 FUT3 ADAR CXCL3 CHD2 RASGEF1B IRAK2 PDE4B BDKRB2 SCN3A CASP1 KDM6A RBM11 KDM6B IL15RA PLAUR SOD2 TIAM2 HSH2D ALDH1A3 LTB RBM43 S100P CXORF38 SPRY2 PTX3 B4GALT5 TRIB1 RTP4 LAMA2 TUFT1 THBS1 PPP2R2A RND3 USP18 NR3C1 RND1 OASL SAMHD1 DDO CYTH4 KYNU PTK2B NRCAM
Down-regulated by SARS-CoV-2 2 MOI in Calu-3 from GSE147507 GAMT ENDOG HEXIM1 DNAAF3 WDR83OS PIH1D1 ZFYVE21 HSPE1 PASK HNRNPM SCD ARMC6 ASB9 HSPA1A ORAI2 POLR3K RHNO1 ASF1B HSPA1B SF3B5 PGAP3 HPGD NCAPG NCAPH CLDN2 NTHL1 PSMD3 DPYSL3 CAPNS1 SAMD1 HES6 SNCA FDFT1 GTSE1 SIGMAR1 FZD1 ICMT CHST7 PLK1 WDR54 TMA7 TEX15 AIF1L THAP11 DHFR GJB1 SQLE TBL3 HOGA1 FASN SAPCD2 SFXN2 SIVA1 TSTA3 CDCA2 ANAPC15 CDCA3 DANCR POP5 NCAPG2 SDR39U1 ENO1 VPS26B TMEM97 PRKDC LRPAP1 MRPL11 MRPL12 GCSH NETO2 PRDX2 PDGFD KCNMB4 PROM2 SDF2L1 NUDC CENPV SNAPIN ANXA5 TESC EMP2 IFT122 EMP3 CDC6 TIMM21 LYZ WDR34 CENPF CENPI ADI1 PXMP2 CENPM CYB561 CENPO ANKS4B CDKN3 CENPT SLBP RPN1 PIF1 HSPB11 FAM149A ACAT2 LDHB MRPL41 PACSIN3 DLGAP5 WWOX CDKN2C AADAT ELOVL6 ZNF580 MANEAL DHRS1 ELP6 TUBB4B BDH1 NCAPD2 NCAPD3 TRMU MPV17L TMEM141 CENPA TUBA1A RECQL4 TMEM147 NSDHL TUBA1B PSMB3 IMPA2 TCTN3 AIFM1 METTL7A NEFL ANKRD54 ANXA9 MDH1 METTL7B AGR2 FADS2 FBXW9 PPP1R16A F12 C1ORF122 HNRNPAB SAP30 COPS6 MAPKAPK3 RAB36 CSPG5 DHCR7 SNRNP25 NHP2 RNASEH2C TUSC2 GPS1 SRSF2 KATNB1 UCP2 HJURP HR CDH6 BCL2L12 RUVBL2 PMPCA SPP1 ACSS2 KPNA2 SLC39A4 C21ORF58 FANCI OSBPL7 PCYT2 IGFBP6 FAM229B CYS1 LRRC45 SLC9A3R1 FANCG ACLY LSM7 KIFC1 BIRC5 TROAP PGP TMPO-AS1 PIN1 MIR31HG GMNN AK2 PHB IPO4 C1ORF53 FOXM1 TM7SF2 MUM1 CHAF1A AMDHD2 MPC2 APMAP UROD THEM6 EIF2B1 SAC3D1 AP2M1 CYB5B RFC5 EIF5A RFC2 NEB DHCR24 AHSA1 ESPL1 MCM4 MCM5 MCM6 DCTPP1 MCM7 KCNK2 TRIM54 MCM2 MCM3 MIPEP SLC25A1 NDUFB7 SHMT1 NDUFB2 PAGR1 PMVK DSEL SPR ORC1 PGK1 CCDC34 NDUFA8 MMAB CYP51A1 NDUFA4 SPAG5 PRC1 CTDSPL PKM LAGE3 SNRNP40 SYT12 ANAPC5 SLC25A10 EIF3B CTXN1 EPHB6 HDAC1 PRPS1 UHRF1 KIAA0100 TSPAN12 HSD17B10 WDR90 CDC45 MIEN1 POLR2E PRADC1 POLR2F HMG20B FBXO9 CD320 TUB BRI3BP IMP3 TM4SF4 KRT8 JMJD8 CDC20 GCAT MALL KIF20A PFN1 CALM1 ATP6V0D1 PLEKHB1 CCNF CISD3 UQCR11 HS6ST1 DPCD LRP8 AQP1 TONSL NCLN SNRPD3 RAD54L E2F1 E2F2 CPNE1 STXBP6 RIBC2 COX8A MANF MIF COMMD4 ALG1 IL17RB TPX2 SDC1 CUTA LMAN2L MARC1 COMMD9 MRPL3 C7ORF50 PTDSS1 TSPAN8 TSPAN6 ARL6IP4 TSPAN3 AGFG2 SKP2 DECR2 ZWINT NME1 VAV3 CLDN10 TPPP3 ID1 ID2 VWA1 SGK2 MPND IGSF9 DTYMK MAOB CETN2 TOP2A PCSK9 KIF12 MEDAG ACACA ERI3 DGCR6L MLEC TNFAIP8L1 CTSH TINAG CCT3 ATP6V0E2 MME MCCC1 RANBP1 PARP1 CACYBP UBE2E3 VASH1 RPA1 THOC3 C9ORF116 PGRMC1 SPC24 NDUFAB1 TRIP13 TACC3 RAMP1 SPC25 FEN1 AHCY TOMM40 GBA DERL3 MKI67 COX5B CRIP2 NUBP2 SOSTDC1 GINS2 QPCTL CA12 SCARA3 UBE2C LIG1 GINS4 RARRES2 ALYREF ARHGEF39 RPGRIP1L SDHA TMX4 FAM173B BUB1B FAM173A POLE4 KIF4A PRR15L STEAP3 ALDH16A1 IVNS1ABP CAPS PCNA NDUFB11 CHRNA5 LOC100294145 NDUFB10 AURKA IHH NRM PEBP1 HSD17B7 TYMS GALNT10 EFTUD2 CAPN8 TMEM129 TCTEX1D2 IGFLR1 MYH10 FDPS TRAPPC2L CASR KIF22 IDH2 OST4 ARHGEF19 TBCD KIF23 SMAD6 CAMKMT KIF18B TMEM237 TRNP1 SRPRB THOP1 KIF2C FGFR4 MXD3 FGFR3 VIL1 PKDCC ISYNA1 ROGDI MYL6B SLC2A8 SCGN EBP CCNB1 HADH FAM81A BCKDHB HSPA8 LRWD1 TICRR HPDL EPN3 VCAN TMEM213 RABEP2 DNLZ NDUFS3 MNS1 IDI1 HMGB3 LMNB1 DBI DPP3 LMNB2 TMEM201 SYNGR1 UPK1B NPBWR1 MFSD3 BCL7C GMPPB FAM83D RBM14 TIMM8B RRM2 H2AFX DCXR ANXA13 H2AFV LSS ANXA10 PSRC1 CAT ALDH1A2 CHDH SLIRP VDAC3 MVD GALM TELO2 MVK RERG DDC HIST1H2BK THRA SLC22A18AS CLN6 CHCHD6 NT5DC2 POLD1 POLD2 DLEU1 CRYM
Up-regulated by MERS-CoV in Calu-3 6hr from GSE139516 ATE1 SDR42E1 MED1 AHNAK2 DNAAF2 WDR75 RC3H1 RC3H2 FRS2 GAPVD1 L1CAM DDX39B RFX7 ASB7 CYP1A1 CDK13 ZSCAN29 ZNF398 EMC3-AS1 ZNF275 USP6NL SGMS2 SGMS1 MAML1 GPATCH4 MT-ND1 FAM168B RNF115 SCAF8 ZMIZ1 CYP1B1 ZNF148 LINC00511 LINC01963 CREBBP DMPK MTERF3 PLK2 DNTTIP2 WDR53 ZNF12 NR1D2 FAM136A THAP12 LATS2 PHF20L1 C12ORF49 TCN1 C5ORF30 FREM2 EZH2 CDC42SE2 HACD2 ZNF131 PDGFC WDR43 ZNF24 ARPP19 PCNX4 PCNX2 DSTYK GRIN2A ADNP2 MCMBP PROM1 ZNF367 ZNF365 PNPT1 TRMT10C JUN RMI1 TET3 NFATC3 TET2 ASH1L C6ORF62 MTF1 ADGRL2 LIMS1 ZNF473 ANXA8L1 TFCP2L1 WDR20 RASAL2 AC015712.2 MED13 TMEM168 TAF5L MECOM EMB MIOS LIN54 MBD4 AC073869.1 MEF2A CFAP97 SLF2 BRD1 SNX25 SERPINB8 F3 DHRS7 CLIP1 SNX18 PELI1 ANKRD40 LGR4 PHLPP2 MTMR12 CIPC PRKAG2 PRSS23 PIGW FAM102B RNF139 PPP1R8 MIR22HG RRP15 PBDC1 GPAT3 CHML SETD2 SRSF11 CSGALNACT2 SLC16A1 MAP3K1 MAP3K2 TLE1 BRPF3 GOLM1 BTBD7 HIPK1 HIPK3 FBXW2 C6ORF141 KAT6A SRSF5 SRSF6 ROR1 TARDBP DSC2 PPP1R15B HDDC2 RNF34 ZBTB24 IL1RAP RBMXL1 EGFR TSEN2 CTGF ATXN1L YY1 CDH6 RBBP6 NSD1 USP1 SLC39A8 KMT5B STX3 STX2 ZNF664 ZNF783 CCDC14 TRAPPC8 FAM217B VEZF1 DYRK1A PPTC7 FBXO34 MFHAS1 DMXL2 RAD54L2 ZNF532 BCL2L2 DIDO1 LRRC58 SLC26A2 IRS1 GMNN NAB1 C11ORF95 FAM13B CUL1 AK4 UBP1 GPATCH2L FGF2 OSBPL10 GLIS3 EFEMP1 PORCN BAG5 NIPBL ZKSCAN8 FGD5-AS1 BTBD3 HNRNPDL ABL2 RFC4 DTX3L LANCL2 SMARCE1 KCNJ15 EIF2AK4 C15ORF52 PTPN14 BICC1 MSL2 ARL4C SP3 CDK6 ZNF639 MFAP3 DSG2 DNAJC9 TNRC6A AMD1 ONECUT2 PTPN21 UBR7 ZNF507 DDI2 PHACTR2 DGCR8 ZNF623 C3ORF58 SMIM13 COA7 CEACAM19 FEM1B DST FEM1C ZBTB39 ERAP1 KIAA0232 PDPK2P LEMD3 ZFP91 ATRN ASXL2 PPM1A KLF7 KLF6 SNRK CD109 PAPD7 CRK PIK3AP1 PLEKHG1 NECTIN3 C1ORF131 PIK3C2G ZBTB40 HDAC9 MALT1 HHEX KIAA1549 KCTD20 TLK1 LRRC8B ITGB8 NCK2 TRIM24 DDIAS CNBP RUNX1 MED13L MTUS1 CCAR1 PM20D2 APC SPATA13 OTULIN MT1G KIF20B CCDC82 EPHA3 MT1F LRP6 CDKN2AIP LRP8 DHX32 DHX33 ADGRA3 E2F3 AL365203.2 CCNL2 CCNL1 TIPIN FER1L4 EGR1 SNHG1 GADD45A ARRDC4 MYO5A RAB27B COMMD2 WAPL SNHG3 IL17RB INPP4B STAG1 RNF144A PIK3R1 SNHG12 PDE12 TSHZ1 INTS7 SSX2IP VGLL3 LPGAT1 PAXIP1 ZBTB2 TMTC3 ZBTB1 GOLGA3 MT2A PKHD1 EPC1 EPC2 AC138969.2 CCDC93 TRPM7 CDR2 ZBED4 NCOA1 TSC22D2 ATMIN TSC22D1 NCOA5 NBPF8 NMI PALB2 LHFPL2 NBPF1 ENAH VAV3 RAP2B UGDH PTPRB KBTBD2 SLTM ACTR10 UMPS ZCCHC14 CSRNP2 TNFRSF11A PTPRR PTPRK PCSK5 SNX4 IDS MAP3K21 L3HYPDH SOCS5 SOCS6 SUZ12 MPP3 MAP4K3 ZYG11B SVIL NORAD SACM1L MPP6 RIT1 TTPAL ANKRD13C AMIGO2 PTGER4 TXLNG TRAK1 KRT7-AS ARNTL2 SERTAD4 EP300 OPHN1 REV3L MAP4K5 GUCY1A3 SZT2 ARHGEF37 TRAPPC10 KLHL23 MID1 GRHL2 PUS7 PPP4R3A ARHGAP32 SHISA2 TGFBI MELTF PCNA EFNA5 ZNF7 PDPR EFNB2 PURB CAPN7 PPFIA1 PCNT CMTR2 DCLRE1A SMAD3 ARHGEF11 SLC30A1 SSH1 ADGRF4 GCLC SPECC1L TAB3 USP42 TAB2 GCLM DYRK2 AC245041.2 AC245041.1 RASEF POGK GSTCD ICE1 CAMSAP2 CREBZF CNN3 ARHGAP21 COL4A3BP SACS FDCSP PDZD8 ARID2 ARFGEF2 HGSNAT ABCC4 TIPARP RBM15 MMP7 GALNT5 ZFHX3 NCBP3 LIMK2 MKL2 ETV3 GULP1 TTC17 ETV6 SENP1 SENP2 AFDN ELF1 NUP50 AGAP6 THRAP3 RASA2 COL7A1 ZMYND11 PAXBP1 USP36 USP38 USP34 TGFBRAP1 SLC40A1 NR2C2 CHD2 FUT4 AFG3L1P FUT9 DPP8 MARVELD2 TOPBP1 WTAP DAPK1 PDPK1 KCTD3 ARID1B KLHL42 PDE10A TBC1D4 GFOD1 PEAK1 ALS2 CHDH LNX2 PDE5A CHURC1 RBM47 ABCE1 MRFAP1L1 ASNSD1 PKD1 SOWAHC THBS1 DDX20 RND3 NR3C1 PKD2 RBM3 NT5DC3 CHSY1 TDG CASC19 LRIG3
Down-regulated by MERS-CoV in Calu-3 6hr from GSE139516 CDK18 GAMT ACOT8 PRELID1 PIH1D1 GTPBP6 HPCAL1 SLC50A1 EML2 PSMB9 PSMC4 SPINT1 ETHE1 HSPA1A VPS28 HSPA1B SF3B5 RPLP0P6 NPRL3 PNKP CLDN3 RNF5 CLDN2 ASNA1 NTHL1 PRSS8 AP2S1 MVB12A RABAC1 RPL18 FDFT1 LINC01843 CHST7 NCAPH2 STARD10 WDR54 EHD2 GJB1 PTP4A3 ABTB1 TBL3 CLPP HOXB4 C19ORF24 MMS19 RNH1 TFRC RPL35 PDGFB ALKBH7 TMEM187 ANAPC11 MRPL11 AAAS C3 MRPL21 NTMT1 PRDX6 CYP2B6 RPSAP58 FDXR NYNRIN MLST8 NAPRT TIMM17B MYO18A RPL36 ATG7 PUSL1 FGFBP1 MCRS1 TESC SSR4 MRPL28 TMC6 FAHD2A SIRT2 MRPL23 GPRC5C ECSIT SERPINA4 GRAMD1A DMAC1 NOC4L MRPL37 LITAF PQBP1 MED16 MRPL41 LHPP C16ORF58 STAP2 WDR18 SF3A2 ZNF341 DYNLL1 CDKN2A MDH2 MGMT DGAT1 NR1H2 WNT7A LRG1 C12ORF10 DHRS3 COX6B1 XAB2 MRPL52 SNX17 HADHA SHKBP1 SMOC1 NUCB1 PLIN3 SLC29A4 MSRB1 SFTA2 GSTP1 TMEM141 MRPL55 UBL7 TUBA1C NSDHL TUBA1B PSMB3 RPSAP15 CKB ELOB ANXA9 TSPO METTL7B ZSWIM4 SEMA4B BIK FBXW9 USP5 RPS9 UCKL1 YIF1A SNRPA OLFM2 RAB34 LY6E RPL13AP5 FKBP8 ADM2 FKBP4 RNASEH2C SLC27A1 PLXND1 MPV17L2 CLU FAM214B SH3BP1 RAB25 RUVBL2 RPS5 MACROD1 PITX1 STX5 ACSS2 SLC16A3 PHLDA2 WDTC1 LINC00116 TRAPPC1 MAP2K3 GOT1 IGFBP4 AIP KREMEN1 RITA1 TRAPPC9 POLRMT ADAP1 SLC9A3R1 NFKB2 COASY DALRD3 LSM7 KIFC3 REEP6 LCN2 FSCN1 PEF1 BCAT2 RNASEH2A METTL27 PFKFB4 CD151 RNF181 EIF4EBP1 HID1 CORO1B HSPBP1 TM7SF2 C6ORF223 VPS72 BTBD2 EIF3CL TMSB10 SEMA7A MAF1 UNC45A ITGA5 GPX4 DHPS ASMTL SORD RPL10P16 NIPSNAP1 TNFRSF1A TMBIM1 HAX1 DNAJC4 BCL3 SLC26A9 MAGIX ACO2 SLC25A1 NDUFB7 SHMT2 TRADD NDUFB4 ATP5D ATP5B KLC4 TKFC VPS51 C8ORF82 BOK MARCKSL1 IDH3G SPAG7 SPAG4 NDUFA3 UNC5A NSMCE1 CDC34 PFKL TST EIF3K EIF3F SLC25A11 NOP53 CCDC61 NECTIN2 HDAC5 ARRB2 PBXIP1 PPP1R13L PRADC1 PGLS HMG20B DCAF11 LARGE2 POLR2L EPHB4 CD320 TRAP1 ECH1 GPKOW TM4SF4 GCAT GSTZ1 NINJ1 SLPI TP53 AC008038.1 EPAS1 ATP6V0D1 KDELR1 WBP2 CBLC AQP5 STX10 UBE2L6 BAIAP2L2 RPS2P46 CPNE1 LONP1 FIS1 SLC6A14 HLA-C HLA-A HLA-B COX7A2L IL17RC VASP VAT1 RPL39L TNNT1 SMTN NDUFAF3 CYSTM1 RTL8C JPT1 CUTA SLC45A3 MAGED1 PPP1R11 ECI1 ICAM1 ZNHIT1 LGALS4 MRPL4 C7ORF50 NUDCD3 MRPL2 LGALS1 ASL TSPAN1 AGFG2 PDK2 PTGES2 TUBB AGTRAP NME3 KRT13 NME4 RHOC PDZK1IP1 KRT18 RPUSD3 TECR ALDOA AARS TMEM161A UBXN1 VGLL1 CITED4 MRPS12 TMPRSS4 TWF2 PTPRH NEU1 RRAS SEC61B SCAND1 TFE3 PHGDH TMED1 PCK2 CLIC1 UBXN6 MPP2 MAP4K2 IL32 UBALD2 NLE1 APRT CTU2 PNPLA6 SIPA1 PNPLA2 FOXA3 TJP3 TRIP10 AHCY MRPS34 AKR1B1 ZDHHC24 NUDT1 CAPG PEPD CRIP2 NUBP2 GUK1 CXCR4 RAC2 MTX1 TGFB1 TUFM QPCTL G6PD CAVIN1 GDF15 NOSIP RPL9P9 FAH AKR7A2 DPM3 UBE2S ILVBL SPNS2 PRR15L CAPS CARS GALNT14 NDUFB11 CD81 SCNN1A NRM SLC1A5 CIB2 RFNG CIB1 FUOM NDRG1 TIMM50 CAPN5 PTTG1 PAK4 EMC9 NDUFV1 MICB TBC1D17 PPFIA3 FDPS YARS EEFSEC ATP6V0B IDH2 MPST CHCHD10 TBCD CYBA ACSF2 GNB2 CARD19 SKIV2L BLVRB TXN2 KIAA1191 ISYNA1 HTRA2 TGM2 CNN2 FPGS UBC KIF3C ZMAT5 ATP6V1F CYC1 RPL15P3 A4GALT MARK4 VARS2 ABHD14B TNIP1 ETV4 DNM1 GALK1 NDUFS8 IRF3 PEX6 NAA38 CUEDC2 COPE EDA STOML1 ABCB8 MOSPD3 TNFAIP2 HK1 HSPB1 PDLIM1 PDLIM4 UPK1B H2AFJ GRK6 C9ORF16 GMPPA MKNK2 MFSD3 VILL HIST1H1C DCXR AC024293.1 PLAUR SOD3 OXLD1 USF2 ERCC1 PNKD GALE TRAPPC6A ERCC2 DDIT4 FAM131B RBM42 FAM98C PFDN4 MVD AURKAIP1 TSEN34 CCDC167 PRR7 DCTN3 CHCHD6 C19ORF70 RPS6KA1 POLD2 VSIG1 EPS8L1 MAPK3 CHCHD2 SNTA1 RPL18AP3 POC1A
Up-regulated by MERS-CoV in Calu-3 24hr from GSE139516 MED1 NGDN RC3H1 FRS2 GTPBP2 RNF103 CPEB2 ABCA12 OSTM1 RFX7 TEP1 ZSCAN25 CYP1A1 ZSCAN26 CDK17 ZNF398 ATF3 ZNF395 ZNF274 AP5Z1 BACH2 RNF6 RNF4 GPATCH8 RNF114 OR2I1P CNST ZMIZ2 MSANTD3 LURAP1L NRBF2 ALOXE3 LINC00511 RNF111 ZNF267 KLF11 CREBBP PHC3 DMPK DNAH17 ZNF140 PLK2 KLF10 INO80 NR1D1 CIDECP NR1D2 ELL2 ZNF16 FOSL2 FERMT2 PHF20L1 PPFIBP2 SETX OSER1 ZNF131 TRIO ITSN2 BCL10 NEDD4L GATA6 BAZ2B EPS8 PCNX2 GRIN2A ZC3H12A PIP5K1A SUPT20H AC107959.3 WDR37 CSNK1A1 JUN DUSP1 OR7E91P NR2F1-AS1 H3F3B TET3 TCF12 NFATC3 TET2 ASH1L ZNF34 CARD6 ZNF35 TMC5 DUSP8 RNF146 CYLD AFTPH MTF1 BHLHE41 PIGA UBAP1 RARB REL RAPGEF1 RNF145 GMEB2 ZNF473 ZNF592 YTHDC1 AKAP17A ADM RASAL2 SPTY2D1 MYNN FAM171A1 TRIM5 MIOS KRT8P12 EGLN1 BRD2 ZNF462 BRD1 CDKN2B MBD1 AEN DHRS2 RYBP C6ORF48 FOSB ZNF217 ANKRD40 ZNF697 SETD5 ZNF211 STON2 LYST SMG7 BTAF1 C16ORF72 IFIH1 ING3 GPNMB GCNT3 RIOK3 GPAT3 NFRKB SETD2 LINC00973 UVRAG MAP3K4 BRPF1 AOC2 MAP3K1 AOC3 BRF2 BRPF3 ZBTB17 ZBTB11 RAB30 HIPK3 CLUHP3 ZNF317 ZNF436 PPIL4 DSC2 ZNF554 ZNF550 CSF1 PPP1R15A TCEAL1 IL1RAP FOXO3 ZBTB20 FAM214A ABLIM1 FGD6 ABLIM3 MAP3K9 STX3 KCMF1 MB21D2 RABL2A TRAF1 HPS5 TNFRSF10D FRMD4B TNFRSF10B DYRK1A PPTC7 IBTK FRMD6 PITPNM2 SYNJ1 CNEP1R1 DMXL2 MAFG SPIRE1 ZNF778 R3HCC1L BIRC3 ZNF532 DIDO1 MYOM1 KMT2E FAM13B KMT2C PHF21A GPATCH2L FGF2 RHOBTB1 GLIS3 C1ORF52 NIPBL ZKSCAN8 FNTA SESN2 ABL2 NEK1 ANKRD10 TNFRSF9 ZKSCAN5 SETDB1 EIF2AK3 QKI ZZEF1 ARL4C ADORA2B BCL3 LCOR TNRC6A TNKS AMD1 RASGRF2 PTPN21 UBR5 NLRC5 UBR1 DUSP16 PTBP2 DUSP10 VPS54 FNIP1 MBIP CEACAM19 PLEKHG3 SPAG9 RALGAPA1 DST FEM1C ZBTB38 RPRD2 KLF4 EHBP1 KLF6 SNRK TXNIP 7-MAR LINC00346 TRIM31 ZBTB48 CEBPG SEMA3B AC110079.1 SYNE1 DNHD1 KIAA1551 KIAA1671 PIK3C2G ITGAM HDAC9 HECTD1 ZNF609 ZNF608 PTPRZ1 SH3D19 CCDC50 ZNF841 SLC25A25 EGOT RUNX1 MED13L MTUS1 CCAR1 NEURL3 IL23A LPAR6 PPP1R3F SIK3 UHRF1BP1 STX16 MYCBP2 PPP1R3B MRNIP CDKN2AIP PARD6B ELMSAN1 ZNF827 STK38L E2F6 CCNL1 ARVCF NTNG2 EGR1 GADD45A PLA2G4C ARRDC3 ARRDC4 COG3 AF279873.2 PTK2 SNHG17 STAG1 ZZZ3 INTS6 INTS7 PLPP3 JMJD1C IFIT2 UBE2J1 GSPT2 GOLGA3 RASSF1 SOX4 FAM86B3P RASSF6 DPF2 MIER1 HIVEP2 EPC1 PPP1R10 TP53BP2 SYNPO TSC22D2 TSC22D1 VEGFA ENAH TOX3 SLTM IGHE CD22 ZCCHC14 CSRNP1 CSRNP2 ZCCHC10 C2CD3 SLC35F5 ZMYM2 SOCS2 PPRC1 STK36 PCF11 ZMYM5 NFIL3 LINC02577 MON2 MMD SVIL ZFR GTF2IP20 TTC1 ITCH PER2 ETAA1 RIT1 NEDD4 B3GNT5 TRIP11 WAC ERRFI1 ANKRD13C SH3RF2 EP300 THSD7A XDH FILIP1L RSPRY1 REV3L MAP4K5 SZT2 DENND4C ARHGEF38 DENND4B ARHGEF37 MID1 TANC2 RAF1 ZFAND5 PRDM4 PVT1 ZFP36L1 CWC25 DNAJC25 ZNF3 CELSR3 EFNB2 CAPN7 ZNF84 DENND5B DENND5A PPP4R1L PDE8A REPS1 UTP15 USP43 ARID5B INHBA ADPRHL1 SLC30A1 HELZ SMAD7 AC027290.2 GEM ARHGAP12 EFNA1 PAN2 DLG1 DNMBP MXD1 H1F0 TMEM2 TAB2 CREB5 FBN2 USP54 WWC1 RASEF ICE1 ETS1 CAMSAP1 ETS2 DDX60 COBLL1 USP53 IL6R CTNNA1P1 ARFGEF2 TIPARP RUBCN NAA30 HSPA6 RHBDD3 SMURF2 SMURF1 SHROOM3 NAV2 YY1AP1 GPCPD1 GULP1 PPP2R5A TGFBR2 SENP1 SENP2 AFDN CLK1 IRF1 NFKBIA ELF1 ELF4 PIKFYVE AGAP6 COL7A1 LPIN2 NFKBIE USP36 ABCB1 SMG1P1 HSPB8 TNFAIP3 TRPS1 CXCL2 CHD2 HRH1 USP31 ZC3H7A LONRF3 KDM6A KDM6B ATF7IP KDM2A EYA1 SPEN NOS3 ZNF184 FNDC3A AC009093.4 TIAM2 PDE10A KANSL3 ALS2 HKDC1 LNX2 CRY1 DDIT3 CCDC174 TRIB1 USP15 ZNF292 DDX20 TNKS2 KANSL1 RND3 NR3C1 RMND5A TOGARAM1 TDG TRA2B CASC19 NRCAM
Down-regulated by MERS-CoV in Calu-3 24hr from GSE139516 ACOT8 RPL24 PIH1D1 MYL6 PSMC4 SPINT2 ASPHD1 CD9 RPL28 RPL29 ASF1B VPS28 HSPA1B SF3B5 PDXK RPL11 CLPB RPL10 PNKP CLDN3 CLDN2 ASNA1 DPYSL2 CAPNS1 S100A14 PRSS8 RPL15 AP2S1 RPL14 MVB12A RABAC1 RPL19 S100A10 RPL18 APOL1 FDFT1 S100A11 GSTK1 KLF16 AIF1L DHFR AC092171.2 EHD2 GJB1 BCAM CLPP LGMN SIVA1 PSME1 FARSA RPL31 PHB2 RNH1 RNPEPL1 CDCA3 RPL4 CDCA4 RPL32 RPL35 TMEM97 F11R MRPL11 C3 LIPG ADH5 GUCD1 PRDX6 PRDX5 STMN1 PRDX1 TIMM17B RPL36 ARPIN SFN SLC19A1 GSDMD GSTM3 ANXA2 TPI1 ANXA4 JUP H3F3A SSR4 EMP1 MRPL28 EMP2 WDR34 GPRC5A GIPC1 MRPL30 FXYD5 INCENP FXYD3 CENPM PAFAH1B3 GPI SLBP ARF5 DMAC1 ECHS1 PQBP1 NKILA ACAT2 MRPL41 CSRP1 TK1 SH3BGRL3 RSU1 TIMP1 TIMP2 TEAD4 WDR18 DFFA DYNLL1 MDH2 GSTO1 NR1H2 LRG1 TUBB4B XAB2 MRPL52 LPCAT4 HADHA SMOC1 PLP2 NUCB1 NCAPD2 CKS2 TKT MSRB1 TP53I13 GRN XXYLT1 TGFB1I1 RPLP2 GSTP1 LPCAT1 UNG FGFRL1 VSIR TUBA1C NSDHL TUBA1B PSMB3 PPP1R7 PSMB4 PSMB2 CKB ELOB TSPO RACK1 SEMA4B PPIL2 GSR SEMA4F RPS9 TPM4 TFPI2 TPM2 HNRNPAB YIF1A YIF1B TUBA4A PLOD1 PSAT1 LY6E RPL13AP5 S100A6 FKBP8 CDKN2AIPNL SNRPB NHP2 URM1 SRSF2 C6ORF132 APEH CTGF TUBB6 RAB25 RUVBL2 CFL1 RPS5 RPS3 MPDU1 GOT2 BNIP3L LSM2 RFXANK HPS6 SLC9A3R1 ACLY METTL26 LSM7 BCL2L1 LCN2 RNASEH2A CD151 EIF4EBP1 TACSTD2 PKMYT1 CORO1B TM7SF2 ESD UROD THEM6 TMSB10 MAF1 GPX1 FUS COA3 UNC45A HSP90AA1 GPX4 DHPS PA2G4 EDF1 DHCR24 NIPSNAP1 TNFRSF1A AHSA1 DBNDD1 NPC2 CDK5 MCM4 MCM7 TMBIM6 TRIM56 SFT2D1 SLC25A1 NDUFB4 ATP5D ATP5B CAPZB COX4I1 PGK1 MARCKSL1 CPT1A GADD45GIP1 IDH3G MBOAT7 UNC5A NSMCE1 ATOX1 MYORG PFKL TST EIF3K EIF3H EIF3I UBA52 EIF3D GAPDH PFKP WDR1 HSP90AB1 HSD17B10 MIEN1 GM2A HMG20B AAMP STK32C SLC25A23 RPL7A POLR2L CACNG6 BRI3BP DUT KRT8 MFSD12 NINJ1 KIF20A CALM2 APP IFITM3 KDELR1 KDELR2 CCNF LRP5 CBLC CSN3 HS6ST1 STX10 LMF2 ACTB EXOSC5 B2M TMED9 XRCC6 PAQR4 TALDO1 MANF HLA-C HLA-B VAT1 REX1BD TLCD1 TNNT1 SDC1 TAGLN2 CYSTM1 ITM2B ITM2C RTL8C JPT1 ANP32A ECI1 IFI35 WFDC2 MGST1 LGALS4 LGALS1 RPS19 SNRNP70 TSPAN4 RPS11 RPS14 RHOA CDT1 TUBB AGTRAP TMUB1 RHOG PDZK1IP1 VEGFB KRT19 ID1 KRT18 RPUSD3 TECR ANXA2P2 PABPC1 CALR ALDOA CD24 IGSF8 COX7C MRPS12 C2CD4A PCSK9 C1QBP SCAND1 QSOX1 TMED3 CTSH PHGDH PCK2 CTSD CLIC1 NQO1 CBR1 ATP6V0E2 MRPS26 UBALD2 ZDHHC12 PGRMC1 APRT SPCS1 B3GNT3 SPC25 CD44 CSTB CD63 TOR4A CAPG PTMS COX5B CRIP2 NUDT5 HYAL2 RAC1 RAC2 MTX1 CD59 SPTAN1 GINS2 RARRES1 TUFM QPCTL CD74 G6PD UBE2C LIG1 CAVIN3 RARRES3 TRPV4 PDAP1 ATP1B3 SDHC ALDH4A1 PPIA UBE2T SELENOW PRR15L MYADM CAPS NDUFB11 CD81 NDUFB10 HSD17B4 MRFAP1 NRM CIB1 FBL TOMM22 AURKB EFTUD2 LMNA GPC1 PTTG1 HCFC1R1 ROMO1 COTL1 BANF1 NDUFV1 RPL39P3 FDPS NONO IDH2 MPST DESI1 TBCD CYBA NASP UPK3B SMAD6 NMRAL1 MAVS GNB2 DYNLRB1 CHMP2A MXD3 BLVRB NARF ISYNA1 SLC41A3 ACTG1 SEZ6L2 COX7A2 SLC2A8 PLCXD1 TGM2 MYDGF CNN2 EEF2K CCNB2 EBP FAM162A FDCSP CYC1 RPL15P3 CD99 PAICS ATP13A2 LRWD1 ABHD14B HPDL TAPBP GALK1 NDUFS8 H3F3AP4 NDUFS5 FAM96B RTN3 DBI ELAVL1 SYNGR1 SYNGR2 CALB2 LASP1 UPK1B H2AFJ C9ORF16 VILL RRM2 RBM38 H2AFX ANXA11 SOD1 CLDN7 FAM155B GLB1 PNKD TRAPPC6A LTBR PPDPF ERCC2 PFDN4 TSEN34 PRKCSH DMKN ATP5G3 ATP5G2 ATP5G1 9-SEP MAT2A VSIG1 EPS8L1 BPNT1 COLGALT1 CHCHD2
Up-regulated by MERS-CoV in Calu-3 from GSE122876 MED1 NGDN NUP214 PRKAB1 GTPBP2 NECAP1 NISCH POLR3A POLR3C ZSCAN21 RFX7 POLR3D C19ORF48 CIAPIN1 CDK12 ZNF398 ATF3 ZNF274 SDAD1 RNF4 GPATCH8 RNF114 SCAF8 ZMIZ2 MSANTD3 CREB3L2 MYC PIP4K2A NRBF2 HES1 FBRS RNF111 CREBBP PLK2 KLF10 INO80 NR1D1 BHLHA15 ELL2 ZNF16 FOSL2 NPLOC4 ABTB2 LATS1 FOSL1 SETX SF1 MCPH1 CFB ZNF131 NEDD4L WDR43 GATA6 NTMT1 ZC3H12A GRPEL2 RNF216 PIP5K1A SUPT20H ZBTB7B IER3 BRAP JUN DUSP1 CCL20 SEC16A ASH1L ZNF35 TMC5 DUSP8 ITPKC SLC7A5 RNF146 TADA2B MTF1 UBAP1 ZNF239 ZNF598 C5ORF45 GMEB2 ZNF473 ZNF592 YTHDC1 PRKRIP1 PHF23 ZC3HAV1 AKAP17A RASAL2 SPTY2D1 MYNN ATXN2 ZNF227 C11ORF24 HMGXB3 BRD4 YTHDF2 MBD6 BRD2 ZNF462 BRD1 MBD1 AEN ELP3 RRP1B SERPINB9 SCAF4 C6ORF48 ZNF217 HBEGF ANKRD40 ZNF335 SETD5 SMG1 SMG7 TMEM265 C16ORF72 IFIH1 PLAGL2 GCNT3 RIOK1 RRP12 GPAT3 NFRKB SETD2 PTPN1 MAP3K4 BRPF1 MAP3K1 BRF2 ZBTB17 MUL1 ZBTB11 ATXN2L CNOT4 ZNF317 SLC25A33 SLC25A32 SQSTM1 AJUBA SEC24D PPP1R15B ZNF550 ODC1 PPP1R15A IL1RAP FOXO3 EGFR GGA1 EIF4ENIF1 GGA3 FGD6 ZFP36 ABLIM3 RBBP6 NSD1 SH3BP4 C1ORF109 MFN2 MAP3K9 C11ORF68 TXNL4B STX3 MB21D2 TNFRSF10D FBXO38 FRMD4B TNFRSF10B DYRK1A TRAF2 PPTC7 FOXN2 NFKB1 NFKB2 MAFF RCAN1 ARMCX5 FRMD6 MAFG BIRC6 SPIRE1 MAP3K14 BIRC3 ZNF410 KMT2E ANKRD17 KMT2B FAM13B KMT2C GPATCH2L FGF2 EDC3 EDC4 GLIS3 OSBP SESN2 ABL2 PIM3 SEMA7A MAP2K7 SETDB1 MICAL3 EIF2AK3 MSL2 QKI ZNF75A GON4L SON ARL4C ADORA2B BCL3 SRCAP ZC3H4 TNKS AMD1 SPATA2 UBR4 DUSP16 BICD2 CYR61 GTF3C1 PELP1 DUSP10 DNAJB1 TRIM47 ZNF746 DNAJB9 RNF25 ZBTB38 MYO10 FEM1A MTOR KLF4 QTRT2 EHBP1 KLF6 POLR1A SNRK TXNIP RP9 CBLL1 MAK16 CEBPB SRXN1 TRIM31 ZBTB48 WDR3 CEBPG FHL2 KIAA1551 KIAA1671 FAM208B HDAC9 SART3 HECTD1 ZNF609 CCL2 UPP1 ARL5B ZNF841 SLC25A25 SFMBT1 RUNX1 PLEKHA4 MED13L PISD SRRM2 CCAR1 NEURL3 CCDC86 TRIM16 PREB BCOR STX16 CDKN2AIP DHX30 NUAK2 PARD6B DHX34 ELMSAN1 NOCT DHX37 STK38L E2F4 SHOC2 CCDC71 E2F6 CCNL1 N4BP1 EGR1 XBP1 GADD45A ARRDC3 ARRDC4 COG3 ARFGAP2 TOPORS ZZZ3 GRWD1 INTS6 RCOR3 RBAK SUGP2 VARS HGH1 PITPNB GCC1 JMJD1C TXNDC11 IFIT2 ICAM1 GSPT2 GOLGA3 RASSF1 GOLGA5 DPF2 HIVEP2 EPC1 PPP1R10 TP53BP2 TRPM7 CDR2 AKIRIN2 AKIRIN1 TSC22D2 NCOA7 TSC22D1 TNFRSF12A NCOA5 LIF RHOB VEGFA NFX1 ARHGEF2 STK40 AARS INTS12 CSRNP1 AHCTF1 SLC35F6 NMD3 FXR2 SBNO2 UGCG SOCS2 PPRC1 PCF11 GSE1 ANKRD1 SMYD5 NFIL3 PDRG1 PARP6 SVIL IL32 ZFR AP3D1 ITCH NEDD4 B3GNT5 WAC DYNC1H1 NRP1 FAF2 SRA1 TXLNG NUDT6 HERPUD1 SH3RF2 EP300 RSPRY1 MAP4K5 FBXW11 DENND4B TJAP1 MOK ARID3B TANC1 ZNFX1 UBE2O AMOTL2 ZSCAN9 PRDM4 CWC25 ZNF3 STRN3 NOL6 RELB STRN4 EFNB2 RPP14 REPS1 UTP15 DDX58 NABP1 NFXL1 INHBA SLC30A1 GEM ARHGAP12 EFNA1 HGS TIMM10B PSPC1 SRPRB GEMIN5 CREB5 MIDN USP54 WWC1 RASEF KLHL18 ICE1 PLAU ETS1 ETS2 POGZ UBD BCL9L TIPARP URGCP USP21 SETD1A RHBDD3 SMURF1 NFKBIZ FAM86B1 YY1AP1 GULP1 CLK1 IRF1 NFKBIA ELF4 PEX5 RASA2 IRF9 NFKBIE USP36 CXCL8 GSK3B NOP2 MAST2 CHD8 TNFAIP3 SLC3A2 CXCL2 CXCL1 CHD4 TNFAIP2 CXCL3 CHD2 TROVE2 CHD1 RPF2 PDLIM2 FAM83G HRH1 IRAK2 NRIP1 VCPKMT NAA25 RBM10 LONRF3 KDM6B RBM12 ATF7IP KDM2A SPEN WTAP CAD ZNF184 SGTA FNDC3A FNDC3B KCTD5 THAP1 FAM179B KANSL3 HKDC1 DDIT3 TRIB3 CCDC174 TAF3 OTUB2 TRIB1 USP15 KRT80 TUFT1 DDX24 ZNF292 THBS1 DDX20 KANSL1 RND3 NR3C1 OASL CYTH3 RBM5 TDG TRA2B MAPK6
Down-regulated by MERS-CoV in Calu-3 from GSE122876 HN1 HSPE1 EID1 GPR160 SPINT2 SPINT1 ASF1B SF3B6 PRSS1 RPL11 ATP5A1 TFPI ASAH1 CLDN2 CLDN1 ASNA1 DPYSL2 S100A14 PRSS8 S100A13 AP2S1 RPL14 S100A10 RPL18 APOL1 GTSE1 GSTK1 PRR11 ATP6AP2 TNNC1 TERF1 DHFR EHD2 GJB1 FAM111B HPRT1 PSME1 PRR15 LXN RPL31 CDCA3 RPL30 RPL32 GNS TMEM97 C14ORF166 CEBPZOS F11R MRPL13 HACD3 MRPL11 LIPA ADH5 PRDX3 PRDX6 BLOC1S1 STMN1 PRDX1 RPL39 LTA4H SFN PROM1 CENPU SRP9 FGFBP1 IKBIP ANXA2 ANXA4 JUP H3F3A ATPIF1 TESC EMP1 EMP2 KIAA1143 PRSS12 LYZ GPRC5A CENPF NSA2 MRPL30 ADI1 INCENP FXYD3 CENPK PAM ERGIC3 PAFAH1B3 CDKN3 SLBP SERPINA3 ACAT1 CLTA RPS27L ECHS1 OAZ2 SKA2 ACAT2 LDHB SH3BGRL3 RSU1 TIMP1 TIMP2 CEP55 DLGAP5 DYNLL1 ODAM ELOVL5 CNPY3 PTGR2 TUBB4B COX6B1 SERPINB6 PTGR1 HADHB NUDT21 FABP5 MRPL52 RNF128 SLC39A10 HADHA APEX1 PLP2 MPLKIP CKS2 OAT GRN RNASEK NDUFA10 HEXB NDUFA11 GSTP1 PYGL TMEM141 LMAN1 TUBA1C TUBA1B NUF2 PSMB2 STRA13 TSPO RACK1 TMEM14B SEMA4B GSR TPM4 TFPI2 TPM2 MSH2 SAP30 COPS5 HAT1 PSAT1 SYPL1 SRSF3 S100A6 SNRPF CDKN2AIPNL SNRPE NHP2 SRSF2 PARK7 CLU PLOD2 CTGF HMGN5 LAPTM4A CDH1 RAB25 KIAA0754 TPM1 SAP18 RPS5 SLC39A6 RBBP7 HMGN1 BNIP3L SHFM1 IGFBP3 ARPC5 LSM5 SLC9A3R1 NDC80 ARPC3 KIFC1 NCL LCN2 PCYOX1 RNASEH2A NIT2 SYAP1 CALCOCO2 UQCRB FAM107B TACSTD2 HNMT CORO1B GOLIM4 UQCRH ESD EIF4EBP2 NEK2 TMSB10 COA4 FUS COA3 GPX2 HSP90AA1 RFC2 VBP1 DHPS NDUFC2 SORD DHCR24 SMC1A NIPSNAP1 AHSA1 TNFRSF21 NPC2 CDK1 TMBIM6 METAP2 SFT2D1 ENY2 NDUFB6 NDUFB5 GLO1 NDUFB4 NDUFB3 HMMR NDUFB1 BRK1 ATP5B DSE ATP5H ATP5E DYNC2LI1 PGK1 CCDC34 RUSC1-AS1 MARCKSL1 CPT1A IDH3G CYP51A1 SPAG7 ERAP2 NSMCE1 NDUFA1 DNAJA1 C1D DAD1 EIF3K EIF3H OCIAD1 SMIM22 GAPDH PFKP PRPS2 SEC11A ITGB6 SRI KIAA0101 HSD17B12 HSD17B11 CDC45 SUMO2 SLC25A23 RPL7A POLR2L DUT IMP3 MALL LACTB2 SLPI SUB1 ANP32E KIF20A KYAT3 CALM2 TP53 APP CSN3 MYL12B ACTB UXT PDCD10 CHEK1 SNRPD3 SNRPD1 B2M FIS1 COX8A TMEM50A XRCC6 GINM1 TALDO1 MIF HLA-C HLA-A HLA-B GBAS VAT1 ALDH7A1 RPS21 CYSTM1 ITM2B ITM2C RPS24 ANP32B ANP32A MAGED2 FCF1 MGST3 PTTG1IP BRCC3 MGST1 IFI30 ZNHIT1 TMPO LGALS1 C14ORF2 TSPAN8 FTH1 TSPAN6 CTSA RHOA PTGES3 TUBB NMI AKR1A1 MLF1 OSMR COX6C MRPS6 FUBP1 P4HA1 KRT19 P4HA2 KRT18 UFC1 AKR1B10 CD24 TOMM6 DDR1 MYCBP VGLL1 COX7C COX7B CETN3 TOP2A STC1 PCSK9 HINT1 SH3BGRL CTSL CTSH PHGDH CLIC1 NQO1 VKORC1 C17ORF49 CREG1 CACYBP RPA3 AKR1C3 UBALD2 ZDHHC12 RAB11A PGRMC1 THOC7 SPCS1 SPC25 CD44 CSTB CD63 GDI2 ZDHHC20 SLC20A2 PRIM1 CAPG PTMS COX5B SPAG16 RAC1 CD59 CCT8 RARRES1 KLHDC3 GABRP CD74 PHYH NPNT G6PD UBE2C CRTAP APLP2 DDTL UBE2A ATP1B3 SDHC DPM1 PPIA SHISA2 UBE2T CAPZA1 PRR15L MYADM LRP11 CAPS NDUFB11 SLC1A1 AURKA HSD17B4 MRFAP1 NRM PEBP1 CIB1 TYMS NDRG1 COX6A1 AURKB TMEM123 PTTG1 ROMO1 FDPS IDH1 NONO IDH2 DSTN CYBA NASP TMEM230 CCNA2 ADGRF1 DYNLRB1 EBPL BLVRB BLVRA VCL SLC41A3 ACTG1 SRP14 SEZ6L2 SEL1L3 TGM2 CCNB2 EBP FAM162A FDCSP CD99 BCKDHA PAICS DARS MMP7 GALNT3 CBX3 CAV1 ABHD14B HIGD2A NDUFS5 MANSC1 PRTFDC1 RTN3 B4GALT4 HMGB3 DBI HMGB2 CALB2 LASP1 UPK1B YWHAQ CA9 HIBCH IGBP1 RRM2 HSDL2 DYNLT3 H2AFV ANXA10 SOD1 GLB1 CAT S100P SSBP1 DYNLT1 PFDN6 NUP37 ITGB3BP DCTN6 THRA MSMO1 ATP5G2 CRYZ FAM166A CHCHD3 ALDH2 VSIG1 BNIP3 BPNT1 CHCHD2
Up-regulated by SARS-CoV-1 in Calu-3 4hr from GSE148729 PIH1D2 AHNAK2 RC3H1 MRTFA GAPVD1 PRKAB2 KIAA1217 CAPN15 AL138756.1 MARCKS ZSCAN20 AC135050.6 AL451064.2 TEP1 GPR161 AC120114.3 AC138150.1 CDK14 PGAP1 ANKLE2 USP6NL MAML1 MTMR9 SPG7 SNX33 AC007406.5 SLC5A3 SPRING1 UBASH3B ABCA3 JAG1 ZBTB7A ABCA1 NAPSA AC138393.1 VPS13D FZD7 MTHFR AC017074.1 VPS13A AC037198.1 VANGL2 FERMT1 ABTB2 HSPG2 SETX FASN HECW2 TRHDE-AS1 CHST3 PADI1 TRIO ITSN2 PDGFB GATA6 MYSM1 ELK3 ELK4 ZXDB C5 PCNX3 ZC3H12C KLF3-AS1 LRAT JUNB ZNF248 AL591848.4 IER3 JUN GSDMB PHF13 TET3 NFATC2 BRAF SAMD4A PAWR APBB1IP TTLL7 BHLHE40 AGO2 BHLHE41 COL22A1 RAPGEF6 ZNF594 CATSPER2P1 KCNC4 ABHD2 RASAL2 SLC7A1 PAXBP1-AS1 NKILA GJC1 RASSF10 GPRASP1 ZNF106 TEAD1 ZNF222 AL353625.1 ZNF462 ZNF460 CRYZL2P WNT7A TMEM65 POU5F2 ADAM19 MAP1B ANGPTL4 PWWP3B GOPC PLCB3 ZNF697 CDKN1B CDKN1A TUT4 FSTL3 RECQL5 ATP6AP1L ZNF449 ANKRD50 GPR135 ZNF566 DIO3OS CSGALNACT2 TLE4 LINC02551 SEC24B MAP3K2 ADAMTSL4-AS1 DIO3 NEAT1 EMSY FBXW2 AC096887.2 LRFN3 SLC25A30 ZNF316 CRAT SLC25A37 AGRN FRK FRA10AC1 AC005261.2 TAF1A-AS1 PHLDB1 CSF2 CTNND2 ZBTB24 EGFR ZBTB20 FAM214A AP000577.2 SH3BP5-AS1 CDH6 FGD6 AP001486.2 ANKAR USP2 FLNB GRB10 AL365436.2 LINC02331 HPS4 LTO1 GABPB1-AS1 PIAS2 AC067838.1 MED26 FRMD6 STK24 KIFC3 MAP3K10 MALAT1 MAFK RNF165 ZNF654 IFNAR2 MDM2 PFKFB3 CD274 NOTCH2 SLC26A2 C11ORF95 KMT2C TPM3P9 PCDHGB9P AP000347.1 RPS15AP10 ZKSCAN8 PMEPA1 SEMA7A ZNF764 FN3K KRT18P11 AL356124.2 ITGA2 KCNJ15 DDHD1 PTPN14 QKI CDK6 PIK3CA MFAP3 ZNF516 LINC00205 NES LCOR SPACA6 SOS2 AHDC1 SOS1 IREB2 BMPR2 NFAT5 ZC3H4 ONECUT2 AC010198.2 UBR4 UBR1 LBH ADAMTS15 DSE HIF1AN ZNF865 SKIL EVI5 CEP170 SMIM10 MCL1 LINC00472 NCKAP5L TSTD2 FEM1B DST KHNYN AC010186.2 FBXL19 PTBP3 KLF8 KLF7 MCM3AP KLF6 MGAT4A ASXL3 PLEKHG1 AL118505.1 LINC00342 ITGB6 FURIN TULP4 ZBTB45 CACNG8 AL136164.3 NHS ITGAV AC073109.1 HNRNPA3 EPHB2 CDON ACVR1 AC002480.2 RUNX1 PLEKHA8 TMCC1 AC020916.1 TRIM13 LINC01176 PANK3 IFITM3 STXBP5 LRP1 PPP1R3B MRNIP AKAP2 DHX37 SUSD6 CCN2 TMEM184A INSR INTS1 AC093010.3 NUAK1 VASN TLCD4 VGLL3 RGL1 RBAK LPAR5 TTBK2 ZBTB4 ZBTB3 LYPLA1P3 AC007191.1 SOX4 CCDC92 SLC2A3P1 RUSC2 ZNF805 MICAL2 HIVEP2 TNRC18 HIVEP1 SOX9 CEP170B ATP6V0A1 CCR1 EDN1 TSC22D2 LIF NBPF10 OSMR RHOB RGMB PTPRE AC010680.2 IL1B AP001767.4 PDIK1L CCNG2 AC092614.1 FAM20B AL021578.1 TLR4 AC009163.4 COL18A1 TRAM2 AC092747.4 NEDD9 SOCS3 PPP3CA SCAI MFSD4B AC103746.1 ANKRD1 TMED7 UBXN7 ZNF585A SVIL NORAD MTX3 MAGI1-IT1 H1FX-AS1 VASH2 AL353795.3 XIAP PER1 KCNQ3 B3GNT5 DIRAS2 AMIGO2 PTGER4 SIPA1L3 SH3RF2 PCLO SERTAD4 AKAP12 TBC1D32 AC087190.3 KIF13B SUFU AC092835.1 DNAH10OS AC092153.1 TBC1D2B KLHL28 KLHL29 HUWE1 TUG1 TBL1XR1 ZNF70 EHBP1L1 MYADM BRWD1 RAI14 OTUD4 Z68871.1 ZSCAN9 ZFP36L1 PRKAR2A-AS1 AC000123.3 CELSR3 AC118344.1 PURB PURA CASKIN2 GPC4 AL596244.1 MORC2 PPP4R1L ARHGEF12 IGF2R ARHGEF18 HNRNPA1P33 INHBA FAM199X SMAD7 SSH1 AC125257.1 DNMBP ADGRF2 COL6A1 CAPRIN2 GHRLOS MICU3 MIDN WNT2B DOCK5 AC245041.1 RASEF SLC41A1 LPP ETS1 PLCXD2 LTBP2 IGF1R SYDE2 DTWD2 ZMAT3 USP53 SACS SBF2 A4GALT USP32P1 HMGA2 NAV1 NAV2 GPCPD1 ETV6 CEP170P1 ELF1 IL6 SFPQ RASA2 COL7A1 ATP13A3 MIR1244-2 PLEC AC091144.2 AC004918.5 AC005839.1 KDM5B TTC26 ZNF197 TNFAIP3 LINC02062 RPAP1 TNFAIP2 TENT4B NR2C2 AC087501.4 RAI1 FAM83H PDLIM4 FAM83F IRAK2 SNAPC3 GRK5 LRP5L C14ORF28 AC016831.6 AC048341.1 EYA4 AC104162.2 KCTD1 MIR193BHG EHMT2-AS1 FNDC3B USF3 AC016831.1 TBX18 IRGQ TIAM2 PALLD REST GFOD1 AC111000.2 AL445686.1 RBM43 ZNF815P KRAS NAA16 TRIB1 PCDHGB5 C2ORF69 TUFT1 THBS1 AP000769.5 CBL BICRA FBXL21P OGFRL1 PRRG4 GNA12 PCED1B DIP2A DIP2B TP73-AS1 ABCD1 CYTH1 DUS4L
Down-regulated by SARS-CoV-1 in Calu-3 4hr from GSE148729 MX1 RPL24 PIH1D1 RPL23 FRS3 CIDECP1 H3P6 PSMC4 SARNP IDNK PSMC2 C19ORF48 ADPRS RPL27 DUS3L CPVL RPL29 SF3B5 RPLP0P6 SNORA9 GHITM ABRACL EXOSC10 TFPT KNSTRN C19ORF53 AL050309.1 RPL18 FDFT1 F8A1 CFAP53 RPL41 AL121594.1 WDR54 TMA7 LOC101927572 H1-2 H1-1 H1-4 H1-3 GJB1 FAM111B H1-5 PKIB TCN1 H2AC21 PSME2 SNORA74A AC106795.1 SNORA47 VAMP5 CHST4 CFB ANAPC13 LINP1 RPL31 RPL4 RPL30 DANCR RPL35 POP5 RPL34 MRPL17 MRPL18 MICOS13 H2AC17 RPL7 LRPAP1 AC010323.1 H2AC12 ADH5 C12ORF57 H2AC14 C19ORF33 GRPEL1 RPSAP58 STMN1 H2AC11 HMOX2 RPL36 RPL38 ANXA1 ANXA2 CENPX ANXA3 TPI1 TMCO1 TIMM23 NUTF2 MRPL27 MRPL24 CDC6 SIRT4 ADH5P4 ATP5MPL ADK TIMM13 PQBP1 OAZ1 MED19 MRPL43 MRPL40 TK1 KRT8P10 LIN52 ELOVL1 SERPINB2 TIMMDC1 DYNLL1 CDKN2D RNLS PET100 RN7SL4P HSBP1 MRPL47 FAM104B TUBB4B COX6B1 RNASE1 TMEM59 PSMA6 RPL4P4 AC034236.1 PSMA5 SNX17 PSMA2 MRPL50 NUCB2 LAMTOR5 SNORA84 SCARNA13 SFTA2 NDUFA12 NDUFA13 TUBA1A MRPL57 MRPL55 PSMB7 FCGRT UBL5 PSMB6 PSMB3 RPL10AP6 H3C12 H3C13 H3C10 RPL23AP42 ELOB MDH1 METTL7B AGR2 RACK1 TMEM14A TMEM14B BID HLA-DMA TMEM14C RPS8 PRRX1 AC092718.4 STX8 RPS7 YIF1A RBX1 HAT1 PSAT1 ADM5 UQCRQ ANKRD22 SNRPG C8ORF31 DHCR7 SNRNP25 AL031777.2 COPS9 HDDC2 POGLUT2 VTCN1 GTF2B NDUFC2-KCTD14 LAPTM4A RPS5 SPP1 NIFK-AS1 AC099336.2 NOP16 GLMP ARPC5 FANCE LSM4 LSM3 AC027309.2 TMEM11 PUDP H4C12 H4C11 COX7CP1 ERH BCAT2 NOP10 RPS10P3 PIN1 RSL24D1 GMNN RNF181 PHB ARL2 ARL3 SAT1 HNMT UQCRH UROD NELFE TMSB10 GPX1 RFC4 AL158801.6 GPX2 RPL13A PSMC1P1 CD24P4 CYB5A AP000311.1 NPC2 CDK5 DCTPP1 MTFR2 TMBIM6 ZNF513 CYP51A1P1 NDUFB7 NDUFB1 BRK1 ORC6 MDK PSAP RPS23P8 SERF2 BCAS2 AL355075.4 NOP58 RNF25 NDUFA6 CCDC58 NDUFA4 TSTD1 RPL35A NDUFA2 ELOA-AS1 RPL23A LAGE3 P2RX4 OCIAD2 UBA52 SMIM22 SMIM26 EEF1A1P6 ATRAID RN7SL3 RN7SL1 RN7SL2 MIEN1 FBXO4 MIR3651 AC073548.1 EEF1B2P3 ATP6V1E1 ECH1 ARL14 AC011448.1 TM4SF4 SLPI AC005833.1 MT1G KIF20A SUCLG1 MT1E MT1F AC116533.1 WBP1 HSP90AA2P RN7SL832P PLEKHB1 BOLA2-SMG1P6 UQCR10 UQCR11 DPCD UBE2L3 MRM3 SNRPD2 EXOSC9 EXOSC4 B2M ATP6V1E2 KRT223P H4C9 MIA COMMD4 PLAAT4 TMSB4XP8 SNHG5 COMMD5 IL17RB COMMD6 RPS26 RPS29 RPS28 SCARNA7 RPS21 CYSTM1 ITM2A RPS23 APOBEC3A RPS25 BEX3 CHCHD2P2 TPI1P1 TXN MGST3 IFIT5 MGST1 ZBED5-AS1 IFIT2 IFIT1 RPS16 RPS15 ZNHIT3 NEDD8-MDP1 RPS19 TSPAN8 ARL6IP5 RPS10 H4C3 FAM53A H4C2 RPS11 H4C4 DECR1 RPS14 RPS13 CDT1 CCDC115 KRT14 ATP5F1E NME1 PDZK1IP1 DERA CLDN10 ID1 ID3 ANXA2P2 AKR1B10 STK32A-AS1 EEF1E1 RANP1 ATPAF2 ATP5ME ATP5MD COX7C SLC44A4 MRPS14 RPS3AP6 AL161756.1 MRPS11 AC012085.1 KRT23 ZCCHC17 KRT20 RPL13P12 SNX2 SMYD2 CTSH H3C4 CLIC1 H3C8 H3C7 AC097625.2 GAD1 MRPS21 ORMDL2 AL645922.1 AC108673.3 H4-16 BRMS1 AC246787.1 NDUFAB1 ATP5PO RAMP1 MAPRE2 CD63 AC010132.3 COX5B ERG28 AL009179.1 NUBP2 ATP5F1A NANS RPL18A RPPH1 ATP5F1C HYAL2 AC073896.1 SDF2 GINS2 H2BC8 H2BC6 H2BC7 UQCC2 H2BC4 ARHGEF39 SDHB SPINK1 TMEM134 DPM3 EEF1A1 UBE2T POLE3 FAU SELENOW RPP25 UBE2N RPL26L1 PCNA RIPOR3 CHRNA5 NAPA COX6A1 AURKB SCEL KIF5C PTTG1 EMC3 EMC4 AC005258.1 ROMO1 FDPS DDX58 H2AC7 H2AC8 H2AC6 TMEM9 CT83 GEMIN6 BLVRB BLVRA TXN2 ALG1L ATP5MC3 SLC2A6 AC010342.1 CCNB2 CCNB1 RGS2 UBB ATP6V1F PARVB RPS3A OAS1 COQ9 H2BC18 H2BC13 H2BC10 AL392086.2 H2BC11 NDUFS5 NDUFS2 PAOX CUEDC2 AL035458.2 PMF1 CKS1B CBY1 DBI EMG1 CA2 AL031729.1 RPL7AP6 TMEM208 BUD23 SOD1 UQCRHL THAP7 HSH2D TAF9 SLIRP PFDN2 PFDN6 CFAP20 CD163L1 SLC22A18AS CRYZ IL1RL2 TCHP ARHGDIB AC008966.1 CHCHD2 IFT57 SUMO1P3
Up-regulated by SARS-CoV-1 in Calu-3 from GSE148729 MX1 MX2 AFAP1 WDR74 PSMB9 CPEB2 ABCA12 TEP1 CYP1A1 CPEB4 CPEB3 IDO1 HCP5 LINC02701 OPTN ATF3 MTMR3 ZNF274 SAMD9 AP5Z1 BACH2 CH25H APOL6 IFNL1 IFNL3 IFNL2 FLRT3 GPBP1 PPP4R4 SNORA73A GBP1 CYP1B1 SNORA73B GBP3 PPARGC1A APOL2 GBP2 APOL1 IFNL4 GBP5 APOL4 GBP4 EPSTI1 ZNF267 APOL3 BATF2 FZD4 DNAH17 PLK3 ABCA5 KLF10 INO80 AC007952.4 MOV10 ABTB2 ATG2B SNORA74A SNORA48 SNORA49 PRKD2 CFAP54 CFB CFH ITSN2 BAZ2B C3 RNF213 NUB1 ZC3H12A ZC3H12C PIP5K1A NKX3-1 IER2 IER5 DUSP5 AC107959.3 PNPT1 JUN DUSP1 SNORA70 CCL20 IL10RA TET2 SAMD4A DUSP8 RNU2-2P ITPKC CYLD ZEB2 REL SNORA68 ACHE SNORA63 ZNF473 ARL14EPL ZC3HAV1 ADM MEG8 MEG9 SERPINA6 BBC3 TRIM5 RIPK2 SNORA57 BRD2 ZNF462 STAT1 STAT2 MBD1 TMEM62 FOS DHRS2 SERPINB9 AL669918.1 FOSB PELI1 ZNF217 ZNF335 ZNF697 FRYL SETD5 RNU4-2 LCAL1 RNU4-1 COL11A2 OGFR TMEM140 FSTL3 LYST SCARNA16 PTGS2 IFIH1 PSMB8 NAMPT SMCHD1 RICTOR SNORA71A IKBKE JAK2 ZNF441 TAP2 TAP1 TICAM1 NEAT1 CXCL10 CXCL11 CLUHP3 TRAFD1 ZNF436 SQSTM1 ZNF433 PPP1R15B COL16A1 CCNT2 CSF2 CSF1 PPP1R15A AHR TNF TANK ZBTB20 FAM214A FOXO1 RNU12 ZFP36 RNF19B LAMP3 HLA-DOB MAP3K8 SH2B3 MB21D2 SLC15A3 FST TRAF1 TNFRSF10B NFKB1 NFKB2 MAFF RCAN1 MYD88 NT5C3A MAFG XAF1 SP140L BIRC3 MAP3K13 ANKRD33B KMT2E CD274 AL136295.5 ANKRD12 KMT2C SAT1 MIR3609 STK10 ABL2 CEP350 TNFRSF9 PIM1 PIM3 SEMA7A KSR1 DTX3L EIF2AK2 MICAL3 EIF2AK3 Z93241.1 ARL4A TRIM56 NFAT5 WHAMM GMPR RASGRF2 C3ORF52 NLRC5 UBR1 DUSP16 DUSP10 DNAJB4 ZNF627 FNIP1 PLEKHG3 STYK1 KLF4 AC010733.2 KLF6 DNAJA4 TXNIP TRIM38 SHFL AC140912.1 SEMA3A MIR155HG AKAP8L SYNE1 DDX60L PPM1K ITGAM HDAC9 RN7SL3 DHX58 CCL5 TRIM25 TLK2 TRIM26 CCL2 TRIM21 AC073109.1 TRIM22 SLC25A25 SP110 IFRD1 LRRN3 ACTN2 EGOT ARL14 RSAD2 MMD2 PLEKHA4 MED13L AC083837.1 PML NEURL3 LAP3 XRN1 IFI27 TRIM14 UHRF1BP1 DCP1A EPHA4 IFITM2 IFITM3 SP100 IFITM1 MYCBP2 STX19 TRANK1 UBE2L6 HERC6 HERC5 NUAK2 IFI16 NOCT SLC12A7 CCNL1 E2F7 N4BP1 EGR1 EGR2 HLA-J TNFSF15 ARRDC3 ARRDC4 AC093010.3 TENT5A PLAAT4 IGF2 HLA-B OVOL1 HLA-H IFI44 HLA-E PARP14 HLA-F PARP12 PARP10 SCARNA5 SCARNA6 PLPP3 NPFFR2 OXTR PIEZO1 JMJD1C IFI35 IFIT5 IKZF2 WFDC5 IKZF3 IFIT2 NBPF26 MIR3142HG IFIT1 ICAM1 MED12L IFIT3 MT2A HELZ2 HIVEP2 EPC1 SNHG20 HIVEP1 TNFSF10 TP53BP2 LGALS9 SYNPO HLA-V AASS AF117829.1 TSC22D2 CCDC117 NCOA7 BTN3A1 NMI LIF IL1A BST2 CEACAM1 THEMIS2 IGHE GLCCI1 AL021578.1 TLR3 CSRNP1 ADRB2 CX3CL1 DUOX1 SBNO2 MAP4K3 IL32 ANO9 PARP8 PARP9 PER1 NEDD4 B3GNT5 CMPK2 ERRFI1 PTGER4 PCLO SIPA1L2 RSRC2 IFNB1 THSD7A FILIP1L TBC1D22B REV3L ZBP1 GDF15 ARID3B ERN1 IFI44L ZNFX1 FAS DENND4A AMOTL2 OTUD1 DCLRE1C RIPOR2 PRDM4 SLFN5 SLC1A3 ARID4B SAMD9L RELB GRIP2 SH3TC1 CMTR1 AC132217.2 TGIF2 DDX58 INHBA AC105105.4 TDRD7 ISG15 SMAD7 KMO GEM ISG20 EFNA1 MXD1 LINC00944 CREB5 ZCCHC2 RTL9 PLAU SLC2A6 RASGRP3 ETS2 DAPP1 DDX60 RASGRP1 PDZD2 SNORD17 SNIP1 SNORD13 PMAIP1 SNORD10 CYP2J2 USP25 TIPARP VDR RUBCN HSPA6 SMURF1 NFKBIZ NAV2 ARAP2 OAS1 GPCPD1 CLK4 ETV7 AFDN CLK1 IRF1 NFKBIA BMP2 IL6 OAS2 OAS3 COL7A1 IRF9 IRF7 AC139491.2 LPIN2 NFKBIE USP36 CXCL8 LINC02068 CXCL9 UBA7 HSPB8 TNFAIP3 SNORD3D CXCL2 CXCL1 TNFAIP2 SNORD3C ADAR CXCL3 CHD2 SNORD3A HRH1 RASGEF1B IRAK2 SCN3A KDM6A KDM6B IL15RA KDM2A PLAUR WARS1 SOD2 AC124319.3 HSH2D DDIT3 PTX3 B4GALT5 AC019117.4 RTP4 ZNF292 USP18 NR3C1 RND1 OASL SAMHD1 FLCN RBM5 TOGARAM1
Down-regulated by SARS-CoV-1 in Calu-3 from GSE148729 ENDOG HOMER2 DNAAF3 AHNAK2 PIH1D1 EID1 SCD MARCKS GPR160 VIM UQCRC1 TES PDXK PGAP3 AHNAK RPL13 NCAPG CLDN3 PPOX ASAH1 DPYSL2 PLCE1 SPOCK2 S100A10 RPL18 FDFT1 GTSE1 FZD2 CHST9 GPLD1 PRR11 RPL41 PLK1 ATP6AP2 ACTL6A TMA7 TEX15 AIF1L DHFR GJB1 VAMP8 PRXL2A SAPCD2 BIN1 TCN1 PPT1 SSPN HOXB8 HOXB7 RPL3 CDCA3 ANAPC16 RPL30 CFI TTYH3 TFRC ENO1 MRPL13 HACD3 H2AC12 PRDX3 PRDX5 ALCAM STMN1 PRDX2 SCP2 PDGFD NYNRIN H2AC11 KCNMB4 PRKACB PROM1 SRP9 IKBIP GSTM3 ANXA2 TPI1 ANXA4 JUP EMP2 IFT122 C1ORF21 LYZ LRRC20 CENPF INF2 FXYD3 C4ORF3 PAH PXMP4 PIGK CDKN3 SERPINA4 ABHD2 DMAC1 RASAL1 TMEM160 IQGAP3 OAZ1 AL450405.1 MRPL33 SERPINA5 SKA2 ACAT2 LDHB LDHA SH3BGRL2 TK1 PRR34-AS1 MBNL3 ODAM MGMT SEPTIN2 ELMOD2 PET100 HSBP1 NFIA CIT COX6B1 SEPTIN9 TMEM59 RNF128 SDHAF4 NCAPD2 OAT NDUFA13 ATL3 CENPA TUBA1A TMSB4X LMAN2 FCGRT FAM102B NUF2 METTL7A ANXA9 TSPO MDH1 AGR2 TP53I11 FADS1 GSN SH3GLB2 TPM4 TFPI2 SEMA4G TUBA4A OLFM4 UQCRQ S100A6 FKBP8 SNRPG SNRPE CNIH4 ROR1 MAD2L1 NHP2 MIR210HG VTCN1 HR PARK7 HMCES HMGN5 RAB26 MACROD2 SC5D TPM1 ZNF428 SPP1 RPS3 HMGN3 SLC16A5 ATP9A IFTAP BNIP3L ARPC5 LSM5 LSM4 LSM3 GGCT AC027309.2 REEP4 BIRC5 BCAT2 SYAP1 MYOM1 NOTCH3 UQCRB EIF4EBP1 AK4 MSI2 TM7SF2 GOLIM4 UQCRH STK11 MPC2 APMAP PMEPA1 UROD THEM6 NEK2 PLS1 ROS1 PLS3 AP2M1 COA3 UNC45A GPX4 MSL3 NEB DHCR24 CYB5A MGAM2 CPD DCTPP1 TMBIM6 ACO1 SERINC5 ST6GALNAC1 NDUFB7 NDUFB6 SHMT1 NDUFB3 NDUFB2 KLC4 PSAP DSEL SPR PGK1 CCDC34 BCAS1 ACP1 LINC02532 NDUFA6 NDUFA4 TSTD1 SPAG5 NAGA NDUFA1 PRC1 TPD52L1 IMPDH1 SYT11 LINC01559 EEF1A1P5 PRPS2 ARHGAP11A SRI ETFB AC010197.2 TSPAN13 ATRAID PBXIP1 USH1C GM2A SLC25A20 POLR2J POLR2L PGM1 H2AZ2 BRI3BP H2AZ1 ECH1 SLC12A2 TM4SF4 AC104532.1 CYP2U1 ANP32E KIF20A OBSL1 PFN2 PLEKHB1 UQCR11 STX10 CARHSP1 AQP1 BSG YBX1P10 NIPAL3 AC245033.1 AC245033.4 MIF COX7A2L TMSB4XP6 VAT1 RPL39L ALDH7A1 RPS28 TNNT1 SDC1 TAGLN2 RTL8B RPS21 RPS20 ITM2A RPS23 ITM2C RPS25 CFTR BEX3 ARL6IP1 ACSM3 TXN MGST3 TXNDC12 PTTG1IP LGALS4 RPS15 COMMD9 LGALS3 RPS17 NEDD8-MDP1 KLHDC7A AL121753.2 TSPAN8 KIAA0930 TSPAN6 PDK1 TSPAN1 PDK2 ARSD CCDC115 YBX1P1 QARS1 GNG12 ATP5F1E NME1 VAV3 CLDN10 KRT19 ANXA2P2 UFC1 COPG2 CD24 COL18A1 ATP5ME SLC44A4 DTYMK COX7B RPS3AP6 MAOB CETN2 MOGAT1 TOP2A PPCS CTSV ANKRD9 SEC14L2 SEC61G MLEC GNPNAT1 CTSH AC020907.6 PHGDH LMCD1 CTSD ATP5MG SRP9P1 SORT1 ATP5PD RPA3 RAB11A PGRMC1 SVIP APRT RAB11B AC009779.4 SPC24 NDUFAB1 PLA2R1 CD46 SPC25 DYNC2I2 AHCY CD63 NUDT3 GPALPP1 NUCKS1 CRIP2 GYS1 NUBP2 AC068580.4 NUDT5 CST3 RPS7P1 AC005943.1 CD59 RARRES1 CA12 CA11 GABRP G6PD CAVIN1 UBE2C LIG1 LMO4 APLP2 RPGRIP1L SGO2 EEF1A1 TMEM258 TMEM139 KIF4A PRR15L PPIH YPEL5 ALDH16A1 FAIM CAPS GALNT12 NDUFB11 AURKA SELENOF ATP1A1 NDRG1 PERP PTTG1 DNAJC22 HCFC1R1 ROMO1 MYH10 NDUFV1 TBC1D16 LNPK FDPS NIBAN2 IDH1 IDH2 CYBA TBCA DARS2 AP000350.4 ACSF2 NMRAL1 NAALADL2 AC026403.1 CCNA2 FGFR3 COX17 COX16 LTBP1 COX7A2 SCGN CCNB2 EBP CCNB1 FAM162A ACAA2 FAM81A COX11 SUN2 CBX6 CBX5 CBX3 CMTM6 SLC52A3 GALNT1 ETV1 RPS3A PPP2R5D TMEM213 RBL2 NDUFS5 MNS1 GPSM2 IDI1 RTN3 BAIAP2-DT HMGB3 SLC3A1 HMGB1 DBI LASP1 UPK1B TMEM205 ERBB2 YWHAQ VILL ANXA13 AC024293.1 ANXA11 LMBRD2 TRAPPC6A LOC105375224 CAT CCDC171 AC243919.1 CCDC167 STEAP4 DDC THRA YBX1 MSMO1 CRYZ NT5DC2 ALDH2 ARHGDIB POLD2 PALMD
Up-regulated by SARS-CoV-2 in Calu-3 4hr from GSE148729 POLR2J2 HOMER2 AL008721.2 UBE2MP1 AHNAK2 MRTFB RFX1 MRTFA NUP210 LRRC37A ISL2 KIAA1217 CAPN15 NUP98 AC135050.6 AL451064.2 TEP1 POLR3H ASB1 PRR7-AS1 ATF3 MTMR3 ZNF275 MAML1 SPG7 SNX33 HERC2P9 ACCS IFNL1 DCAF1 FBXL20 IFNL2 LURAP1L CAPNS1 ZNF561-AS1 PPARGC1B LINC00511 EBLN3P FZD1 ABCA3 JAG1 ZBTB7A ZNF264 ZNF142 ATP6AP1 FZD8 PLK3 MARS2 MTHFR PHKA1 GARS-DT FERMT1 ZSCAN16-AS1 HSPG2 FASN ZNF37A CHST3 ZNF257 PADI1 AC011476.3 PDGFB GATA6 MYSM1 ELK3 LARP1 PPP4C PCNX2 PCNX3 JUNB ZNF248 AL591848.4 JUN CROCCP3 SEC16A ASH1L JOSD1 SLC7A5 MBLAC2 ABCC10 TTLL4 AGO4 MTF1 BHLHE40 AGO2 RAPGEF6 IL18BP ZNF112 ZNF594 SNORA60 ZNF592 KCNC4 RASAL2 NKILA GJC1 AC010326.5 GPRASP1 AC037459.2 HMGXB3 ZNF587 AL161431.1 AL353625.1 MBD6 ZNF462 SCAF1 SERPINB8 GTF2H4 AC004076.2 ADAM19 AC073957.3 NFIC MAP1B ANGPTL4 AL162615.1 ZNF217 HSD17B7P2 SETD5 STAG3L1 ZNF573 TUT7 CDKN1A SMG1 PRKAG2 POLRMTP1 NDST2 C18ORF25 MPRIP ANKRD50 GPR135 ZNF566 ZNF324 ZSWIM3 DIO3OS ZNF202 AC024580.2 ZNF562 ZBTB18 SEC24B BRPF3 AL132656.4 SEMA4D BTBD7 HIPK2 ATP11A TICAM1 NEAT1 LRCH1 SKI LRFN3 CNOT6 MMP25-AS1 C1ORF116 ZNF318 SLC25A30 ZNF316 SLC25A37 FAM71F2 ZNF672 ROCK1 ZBTB24 EGFR SLC9A1 SH3BP5-AS1 AL162171.3 ITPRIPL2 HAS2 HAS3 MAP3K9 SIAE IGFBP4 SLC25A51 DYRK1B GPR75 LTO1 PPTC7 PIAS2 FRMD6 MAP3K10 MALAT1 MAFK AC027514.1 EIF4G3 PFKFB3 DIDO1 CUL9 CEMIP CD274 KMT2A KMT2D KMT2C AL353150.1 OSBP BTBD3 ZNF526 PLXNA1 SEMA7A ZNF764 ZKSCAN2 AL356124.2 FUS KCNJ11 STARD7-AS1 KSR2 ITGA2 KCNJ15 DDHD2 DMRTA1 FAM27E3 AC106798.1 NES AC018809.2 TRIM56 AHDC1 IREB2 AC005534.1 NFAT5 CELF1 ONECUT3 RASGRF2 PTPN21 ITPR3 UBR3 FOXK1 BICD2 ADAMTS15 ZNF749 AL160006.1 MDN1 AC067968.1 DSP NCKAP5L AC111170.4 RALGAPA2 KCNH8 AC080023.2 KHNYN MYO10 FBXL18 KIAA1549L KIAA0232 AC009078.3 KLF4 AC020658.6 AC092828.1 MFSD14C KLF7 MCM3AP KLF6 TSPAN14 ZNF618 AC107021.2 NPIPB4 KCTD19 AL118505.1 MYO1G LINC00342 RPL32P3 DYSF DNHD1 LENG8 PPM1L AC027031.2 RESF1 CACNG8 KIAA1549 AL928654.4 ERC1 NPIPA1 KLRA1P MLXIP CDON LINC02035 ARL10 IL1R1 AC002480.2 WASH9P MGA RUNX1 NBEAL2 AC020916.1 UBAP1L AC022167.1 ALPK3 UHRF1BP1 BCORL1 TRIM11 MINCR CCDC69 CERK AC067931.1 AC007128.1 AC007128.2 HERC2 DHX34 CSNK1D CFAP251 DHX37 SUSD6 CCN2 EGR1 TMEM184A INSR CCDC9B AC106820.4 INTS1 SATB1-AS1 NUAK1 AL117336.2 CDCP1 WNK1 INTS5 RCOR1 AC004233.2 NBPF20 DCUN1D2 LGALSL GBA2 GOLGA3 SLC2A3P1 ZNF805 MICAL2 HIVEP1 C22ORF46 TNS4 ATP6V0A1 ZNF587B ZHX3 TMEM150C RPL41P5 AMPD2 LIF NBPF14 PTPRE FUBP3 CAMK4 AL021578.1 MEGF8 LINC01139 CSRNP1 TRAM2 MOGAT1 AC102953.2 SOCS3 NEU3 SLC22A14 AC103746.1 CTSK SOCS7 LRRFIP1P1 ZNF585A LMLN GBF1 DOHH DLC1 NBR2 CTAGE15 ERRFI1 AC092910.3 PRICKLE1 PCLO AKAP13 MIR3680-1 AKAP12 SERTAD2 IFNB1 JHY AC092835.1 AC145098.2 BTNL9 IL4R SDHAP1 ARID3B HUWE1 AP5B1 KLHL21 ANKHD1 TANC2 AC118344.4 UBE2O WDFY3 MYADM AMOTL2 RAI14 ADCY10P1 OTUD4 PPP1R26-AS1 SUPT6H CELSR1 CRTC1 PRAG1 GEMIN4 KLHL36 CELSR3 PSORS1C1 PSORS1C3 TATDN2 PRR14L EP400 DENND5A MORC2 BORCS8 ARHGEF12 CARD10 ZC3H13 ARHGEF18 HNRNPA1P33 RAP1GAP2 HELZ SSH1 AC027290.3 SSH2 DNMBP ADGRF2 TMEM117 CAPRIN2 FGFR1 AL627309.6 DOCK7 MIDN DOCK5 KLHL18 PKD1P6 ETS1 LTBP2 ETS2 IGF1R ARHGAP23 EME2 CAMTA2 SBF2 QSER1 AP002748.4 RUBCN SMURF1 SETD1B NFKBIZ NAV1 ETV6 IFNE HOOK2 RASA3 COL7A1 RBMS2 USP20 PLEC AC004918.5 SHANK2 H6PD USP36 GSK3A TNFAIP3 MTR TENT4A CHD3 HK2 RAI1 FAM83H FAM83G PDLIM4 FAM83F MKNK1 UBE2Q1 KTN1-AS1 SYMPK LONRF2 WNT4 ZNF189 AC016831.6 EYA3 PDPK1 EYA4 KCTD1 FNDC3B USF3 AC016831.1 TBX18 IRGQ SNTB1 TIAM2 RBBP4P2 AL591895.1 GFOD1 AC111000.2 AC092306.1 FAM131B RN7SKP296 POMK AC011503.2 SPRY1 TRIB1 TUFT1 LAMA5 THBS1 ATP2A2 CBL FLCN GNA12 DIP2A DIP2B CCDC163
Down-regulated by SARS-CoV-2 in Calu-3 4hr from GSE148729 MED4 RPL24 DEK FRS3 HSPE1 PSMB9 SYTL3 EID1 H3P6 FEZ1 SARNP PSMC2 TMEM126B TBPL1 HNRNPC RPL24P4 POLR3K VPS28 SF3B5 PON2 ABRACL RNF5 TFPT SRP72 GPBP1 SNCG RPL35P1 PRSS3 RPL18 S100A11 DNAH14 NAA50 RPL41 ATP6AP2 AL121594.1 WDR54 TMA7 GPN3 H1-2 NUDT16L1 GJB1 ACE2 H1-5 VAMP8 PKIB TCN1 H2AC21 PSME2 PRR13 CFB ANAPC13 RPL30 CFH SCOC RPL35 POP5 RPL34 MRPL18 LIPA BLOC1S5 C12ORF57 PRDX3 PRDX5 H2AC15 CFAP298-TCP10L STMN1 H2AC11 RPL37 AGMO TIMM17A AC005083.1 AMZ2 SNORA32 SRP9 BTF3 ANXA1 RARA-AS1 CENPX ANXA3 TMCO1 TIMM23 LYZ SIRT4 CENPE C4ORF3 HLA-DQB1 ADH5P4 CENPQ ERGIC2 DMAC1 AP001816.1 OAZ1 LRRC31 TRMT112 RAD51AP1 RIPK2 TIMP1 TIMMDC1 DYNLL1 PET100 HSBP1 RPS28P7 MRPL47 MZT1 TMEM60 RNASE1 TMEM59 TMEM156 PSMA7 PSMA5 PSMA2 MRPL50 PSMA3 TIPRL NUCB2 TMEM229B LAMTOR5 ZNF576 NDUFA12 NDUFA13 GSTP1 TUBA1A PPP1R2 TMSB4X PSMB8 PSMB6 PSMB3 RPL10AP6 H3C12 H3C13 H3C10 RPL23AP42 MDH1 TMEM38B AGR2 TMEM14B HLA-DMA TMEM14C CD164 TFPI2 AGT RBX1 TUBA4A HAT1 UQCRQ PDCD5 SRSF3 ANKRD22 SNRPG COPS9 SNRPE ELL2P1 MAD2L1 C11ORF58 FKBP3 VTCN1 FAXC UBE2D3 UBE2D1 CREBL2 CLU NDUFC2-KCTD14 LAPTM4A RIDA RBBP9 SAP18 SPP1 HMGN3 AC099336.2 FANCL ZCRB1 BNIP3L LRRC40 ARPC5 LSM5 LSM3 DUSP23 TMEM11 PUDP DRAP1 COX7CP1 RLN2 NOP10 RSL24D1 GMNN TPMT RNF181 COX6A1P2 ARL3 AK6 SAT1 UQCRH AL021546.1 UROD STYX TMSB10 GPX2 GLYATL2 VBP1 AC099661.1 LANCL1 TPRKB PSMC1P1 NDUFC2 NDUFC1 LOC107984142 CDK7 DNAJC8 CDK5 SYF2 ECHDC1 CDK1 ENY2 NDUFB9 NDUFB7 NDUFB6 NDUFB5 NDUFB3 NDUFB1 ZMPSTE24 MDK PSAP SPR SLCO1B3 CAPZB SERF2 CCDC34 BCAS2 COA6 NDUFA8 NDUFA6 AC008750.8 NDUFA5 SPAG7 CCDC58 TSTD1 RPL35A NDUFA2 LAGE3 RAB10 RNU5B-1 EIF3K OCIAD2 SMIM20 SMIM22 MMADHC EIF3E PPM1N ETFA TSPAN13 HIRIP3 SUMO2 POLR2F AC073548.1 SMIM30 SEC11C FBXO8 POLR2K SSB H2AZ1 ECH1 ARL14 AC011448.1 TM4SF4 PPA1 PEX13 NEIL3 PPA2 SLPI SUB1 MT1E RETREG1 MT1F AC116533.1 IFITM1 RN7SL832P PLEKHB1 UQCR10 CCNC PYURF MAGOH RPL36AL C1GALT1C1 SNRPD2 YBX1P10 EXOSC9 APBB1 TIPIN C3ORF14 FIS1 MANF CMC1 COMMD4 COMMD1 PLAAT4 HLA-B TMSB4XP8 SNHG6 COMMD8 COX7A2L HLA-E COMMD6 RPS26 MYL12A PLPP5 NDUFAF4 FBXL3 CYSTM1 ITM2A RPS23 RPS25 IFI27L2 SYNJ2BP-COX16 BEX3 CHCHD2P2 ARL6IP1 TXN MGST3 TXNDC12 MRPL1 MRPL9 NEDD8-MDP1 TSPAN8 ARL6IP6 ARL6IP5 H4C3 TNFSF10 H4C2 SEC62 SPA17 LINC01144 LINC01023 GABBR1 CCDC115 KRT14 CRIPT ATP5F1E PDZK1IP1 CLDN10 FRG1 CCNG1 ANXA2P2 AKR1B10 STK32A-AS1 TOMM5 CD24 ATP5MD COX7C SLC44A4 COX7B ZCCHC10 NEDD8 KHK ZCCHC17 CX3CL1 IER3IP1 CTSS SH3BGRL SNX3 MAGT1 SEC61G CTSH TMED7 LRRCC1 MPZL2 ATP5PD AC097625.2 MRPS21 CACYBP RPA3 MRPS22 AL645922.1 AC009403.1 PGRMC1 SVIP AC246787.1 SAA2 SAA1 CSTB AKR1B1 DIRAS3 DERL2 COX5B SPAG16 SERP1 AC134682.1 METTL5 BCAP29 SDF2 CIAO2A CD74 H2BC6 RPL36A-HNRNPH2 H2BC4 APLP2 H2BC5 SDHD SPINK1 AL138752.2 SELENOT UBE2T TMX1 CDK2AP1 CCDC152 YPEL5 MPHOSPH6 FAIM STEAP1 UBE2N RPL26L1 PCNA CHRNA5 BCCIP SELENOF NDRG2 SELENOK COX6A1 AURKB ZNF85 PTTG1 AC005258.1 ROMO1 AC124045.1 EPHX1 VTA1 BRD7P2 TBCA GATA6-AS1 CT83 UBA3 AC078927.1 MUC20 CHMP5 TXN2 EIF2S2P4 COX17 COX16 CCDC126 ATP5MC3 DPY30 SRP14 DNPH1 HIGD1A RNF5P1 RDM1 CCNB1 ZMAT2 CLTRN UBD CHMP1B FDCSP ATP6V1F GGT1 MMP7 CBX3 OAS1 IQCK HIGD2A IFT43 NDUFS6 AL445685.3 NDUFS5 H2BC12 NDUFS2 CYCS MNS1 MIR1244-1 NAA38 CUEDC2 IDI1 AL035458.2 PSMD10 CKS1B DBI HMGB2 SNORD3C CA2 RPL7AP6 RWDD1 THAP2 UQCRHL TRAPPC6A COX20P1 SLIRP PFDN2 SSBP1 PFDN4 ST13P3 AURKAIP1 ITGB3BP YBX1 AC087500.1 MSMO1 CRYZ MAT2B ARHGDIB OTUD6B-AS1 IFT57 RBM34
Up-regulated by SARS-CoV-2 in Calu-3 24hr from GSE148729 MX1 MX2 AFAP1 DICER1 FRS2 PSMB9 RUFY4 TEP1 CYP1A1 CPEB3 IDO1 HCP5 LINC02701 OPTN SNORA21 ATF3 SAMD9 RNU1-67P SYNPO2 BACH2 CH25H APOL6 IFNL1 IFNL3 IFNL2 PPP4R4 SNORA73A GBP1 SNORA73B GBP3 HES4 APOL2 ST3GAL2 APOL1 SNORA12 IFNL4 GBP5 APOL4 GBP4 EPSTI1 APOL3 BATF2 JUND FZD4 DNAH17 PLK3 H1-0 MOV10 LGMN SNORA74A SNORA48 SLC5A4-AS1 SNAI1 PRKD2 CFAP54 CFAP57 CFB SNORD3B-2 CFH BAZ2B TAPBPL IL4I1 RNF213 NUB1 ZC3H12C NKX3-1 PLCG2 IER5 DUSP5 AC107959.3 PNPT1 JUN GSDMB AC107959.1 DUSP1 SNORA70 CCL20 SEC16B NR2F1-AS1 IL10RA TET2 RNU2-2P CYLD ZEB2 REL AC005070.3 AL645929.3 ACHE SNORA63 ZC3HAV1 ADM ENDOD1 AREG KIAA0040 BBC3 TRIM5 RIPK2 SERPINB2 STAT1 STAT2 G0S2 TMEM62 FOS STING1 SERPINB9 AL669918.1 FOSB PELI1 HBEGF ZNF697 HSD17B7P2 AL591222.1 RNU4-2 RNU4-1 COL11A2 SERPINB10 OGFR TMEM140 PTGS2 IFIH1 PSMB8 GCNT4 SNORA71A JAK2 ZNF200 ZNF442 ZNF441 TAP2 TAP1 NEAT1 MOB3C CXCL10 CXCL11 CLUHP3 TRAFD1 LY6E COL16A1 CSF1 PPP1R15A TNF AC025580.2 ZBTB20 FOXO1 JAKMIP3 BCL2L14 ZFP36 RNF19B RAB24 UBN2 LAMP3 PAXIP1-AS2 GRB10 HLA-DOB MAP3K8 H2BU1 MB21D2 SLC15A3 TRPC4 BTN2A2 IGFBP4 FST TRAF1 TNFRSF10B MAFA NFKB2 MAFF RCAN1 MYD88 NT5C3A FSCN1 XAF1 SP140L BIRC3 ANKRD33B CD274 CNP KMT2C SAT1 STK10 TAAR3P ABL2 TRIM69 PLXNA2 TNFRSF9 SEMA7A ANGPT2 KSR1 DTX3L ASNS HLA-DRA OR52K3P TRIM56 NFE2L3 GMPR NLRC5 DUSP16 C15ORF48 DNAJB4 PHACTR4 ZNF503 CIITA PATL1 SPAG9 ERAP1 ERAP2 AL109918.1 KLF4 PATL2 KLF6 MFSD14A TXNIP TRIM38 SHFL PIK3AP1 AC022506.1 BLZF1 RNVU1-31 CEBPB SEMA3A MDGA1 C1R TRIM31 MIR155HG UNC93B1 SEMA3D SYNE1 DDX60L PPM1K AMBRA1 ITGAM HDAC9 RN7SL3 TNFSF13B DHX58 CCL5 TRIM26 TRIM21 TRIM22 SP110 AC002480.1 ACTN2 HCG27 EGOT ARL14 RSAD2 MMD2 PLEKHA4 AC083837.1 PML NEURL3 LAP3 XRN1 IFI27 HIP1R TRIM14 UHRF1BP1 DCP1A EPHA4 IFITM2 IFITM3 LRP2 SP100 IFITM1 MYCBP2 AC022034.1 NOD1 TRANK1 UBE2L6 C4A PSMB10 HERC6 HERC5 NUAK2 IFI16 NOCT AC015688.4 RNVU1-28 CHAC1 SLC12A7 B2M CCNL1 N4BP1 EGR1 HLA-K EGR2 APOBEC3G HLA-J TNFSF15 GADD45B ARRDC3 HLA-C HLA-A TENT5A PLAAT4 IGF2 HLA-B HLA-H IFI44 SNHG3 HLA-E SRPK2 EXT1 PARP14 HLA-F PARP12 ARC PARP10 SCARNA5 SCARNA6 RAET1L IFI35 IFIT5 WFDC5 IKZF3 IFIT2 IFIT1 ICAM1 MED12L IFIT3 MT2A HELZ2 HIVEP2 EPC1 TNFSF10 IL12A LGALS9 ZBED5 HLA-V AF117829.1 GABBR1 BTN3A2 NCOA7 BTN3A1 NMI BTN3A3 IL1A BST2 CEACAM1 THEMIS2 GLCCI1 AL021578.1 H2AW TLR3 CSRNP1 CD40 CITED2 SECTM1 NEDD9 ADRB2 P3R3URF-PIK3R3 CX3CL1 CTSS SOCS3 DUOX1 SOCS1 DND1 AC018644.1 IL32 GCH1 AL645922.1 PA2G4P4 PARP9 PER1 NEDD4 CMPK2 PTGER4 HERPUD1 PCLO RANBP3L SIPA1L2 RSRC2 IFNB1 CD55 ZBP1 CD74 GDF15 ARHGEF38 GCA CPSF1P1 LIFR PDGFRL IFI44L ZNFX1 FAP FAS OTUD1 CD68 PSMB8-AS1 TYMP RIPOR2 CD83 SLFN5 SLC1A3 IFI6 SAMD9L RELB GRIP2 WIF1 CSKMT SLIT2 AC132217.2 DDX58 INHBA TDRD7 ISG15 AC027290.2 ISG20 MXD1 LINC00944 CREB5 IL7R RTL9 RASGRP3 ETS2 NR4A1 DAPP1 DDX60 KCNV1 SYDE1 PODXL PDZD2 SNORD17 CLTRN UBD SNIP1 ZNF385C PMAIP1 SNORD10 MLKL CYP2J2 TIPARP SMURF1 NFKBIZ NAV2 IRF1-AS1 ETV3 OAS1 GPCPD1 NAMPTP1 ETV7 IRF1 NFKBIA H2BC14 BMP2 IL6 OAS2 OAS3 IRF9 IRF7 NFKBIE TTC26 CXCL8 LINC02068 CXCL9 UBA7 HSPB8 TNFAIP3 PIK3R3 CXCL2 TNFAIP2 ADAR CHD2 SNORD3A TTC28 FUT4 HRH1 RASGEF1B IRAK2 DIAPH2-AS1 RPS6KC1 SCN3A CASP1 AC109326.1 KDM6A KDM6B IL15RA VTRNA1-3 ZNF300P1 FNDC3A PLAUR WARS1 SOD2 HSH2D ACKR4 SPRY2 AC015849.1 PTX3 B4GALT5 CRYZL2P-SEC16B RTP4 USP18 NR3C1 RND1 OASL SAMHD1 AL138787.2 CHSY3 KYNU CASC19
Down-regulated by SARS-CoV-2 in Calu-3 24hr from GSE148729 HOMER2 AHNAK2 IFT80 EID1 SCD MARCKS DEPDC1B GPR160 GPR161 VIM GPD1L CYFIP2 PDXK PGAP3 AHNAK NCAPG HNRNPR ASAH1 SPDEF DPYSL2 KNSTRN DPYSL3 PLCE1 SPOCK2 SAMD1 EXPH5 SNCA FDFT1 LINC01963 CHST9 ICMT PRR11 PLK1 ERLIN2 TMA7 TEX15 AIF1L DHFR PBX1 GJB1 SQLE VANGL1 HOGA1 PRXL2A SAPCD2 TCN1 PLBD1 NOSTRIN SSPN SFXN3 TRHDE-AS1 HACD2 CDCA3 CFI TFRC CDCA7 TMEM181 PRKDC HACD3 MYLK C5 PRDX5 ALCAM STMN1 PRDX2 SCP2 PDGFD PRKAR2A NYNRIN KCNMB4 ARPIN MMUT PRKACB SRP9 IKBIP ANXA4 ANXA5 EMP2 IFT122 PRSS12 MRPL24 SUMF1 LYZ TMCO3 LRRC20 CENPE CENPF CENPI C4ORF3 PAH VMA21 PXMP4 AGO1 PAM ATP5MPL CDKN3 GPI SERPINA3 SERPINA4 PARPBP KCNC4 ABHD2 DMAC1 TRIM2 IQGAP3 NKILA FAM149A ACAT2 ERMP1 LDHA SH3BGRL2 PBK HAVCR1 MBNL3 PPARA ODAM SEPTIN2 CRYZL2P NFIA CIT FARP1 SEPTIN9 TMEM59 DHRS7 RNF128 SLC39A10 NCAPD2 LAMTOR5 AC000120.3 RPLP0 ADAM22 CENPA TUBA1A LMAN1 NSDHL METTL7A TCTN1 ANXA9 RNF130 MDH1 APPL2 FADS1 SRD5A3 USP5 SEMA4G PPP1CB CDC25C MORF4L1 OLFM4 TNIK DHCR7 COPS9 ROR1 DSC3 VTCN1 SLC25A40 CTNND2 PROS1 CREBL2 SC5D TPM1 SLC16A7 CHP1 SPP1 HMGN3 ATP9A KPNA2 CCDC18 SWAP70 ODF2 BNIP3L ARPC5 NBEA LSM3 GGCT SCCPDH BIRC5 PCYOX1 TMEM19 IFNAR1 PFKFB3 MYOM1 NOTCH3 SLC26A2 INSIG1 AK4 MSI2 HNMT TM7SF2 GOLIM4 UQCRH MPC2 PMEPA1 UROD SESN3 HMGB1P5 NEK2 HMGB1P6 PLS1 ROS1 RAB4A AP2M1 COA3 TNFRSF19 MORF4L1P1 NEB DHCR24 BICC1 CYB5A CPD EFHC1 TMBIM6 ACO1 SFT2D2 SERINC5 MIPEP NDUFB6 GLO1 SHMT1 HMMR KLC4 PMVK DSEL CCDC85C CAPZB ACP6 PGK1 LBR CCDC34 BCAS1 TRIQK MMAB CYP51A1 SPAG5 MBOAT2 SYT16 PRC1 TSN CTDSPL TPD52L1 ASPM MYORG MYO1C VPS41 SYT12 CD109 EEF1A1P5 UGT2B7 ITGB1 ARHGAP11A ITGB6 SEMA3E SRI ETFB ARRB2 KIAA0100 PIK3C2B ATRAID CXXC5 PBXIP1 USH1C GM2A RNPEP ITGAV VPS35 DCAF11 CACNG4 SLC25A23 H2AZ2 DYNC2H1 BRI3BP H2AZ1 ECH1 SLC12A2 TM4SF4 DHX40 TTC39C AC104532.1 NIN ANP32E KIF20A OBSL1 CERK PLEKHB1 CARHSP1 SEPHS1 PIMREG RACGAP1 NIPAL3 IARS2 E2F8 XRCC5 ST6GAL1 CMBL VAT1 TPX2 ALDH7A1 TNNT1 GNPAT SDC1 TAGLN2 TLCD4 ITM2A RPS25 CFTR PDE1C ARL6IP1 ANP32A MGST2 PTTG1IP HTATSF1 LGALS4 COMMD9 DMBX1 KLHDC7A TSPAN8 ARL6IP5 TSPAN6 PDK1 SPA17 ARSD STRBP MLF1 GNG12 VAV3 PTPRF CLDN10 ANXA2P2 VWA2 DEPDC1 COPG2 AKR1B10 TLR5 ARHGEF9 CD24 PTPRU TOP2B PTPRS SLC44A4 TRAM1 DTYMK MAOB TOP2A KLK6 KIF15 KIF14 PCSK9 KIF12 CD99L2 ACACA NNT HLTF MAP4 ERI3 MLEC GNPNAT1 TNFAIP8L1 CTSH KIF1C MAP3K20 LMCD1 CTSD SORT1 MME SCD5 ATP5PB TTC3 AKR1C3 SORBS2 PGRMC1 PLA2R1 CD46 SPC25 MEGF6 NUDT3 NUCKS1 CRIP2 AC068580.4 AL049839.2 NUSAP1 CD59 RARRES1 RALBP1 G6PD LMO4 APLP2 SPINK1 AC005332.6 SGO2 EEF1A1 TBL1XR1 CYP24A1 BUB1B KIF4A ANKS6 SPNS2 TGFBI CAPS GALNT12 HFE AURKA HDLBP ATP1A1 NDRG2 GALNT10 CAPN5 HSD17B2 PERP PTTG1 DNAJC22 GPC4 CAPN2 MYH10 REPS2 LNPK FDPS IDH1 SREBF2 SLC30A9 HGD IDH2 TMEM230 DARS2 ACSF2 NAALADL2 ALDH3A2 CHMP3 FGFR3 MXD4 LPP TRHDE AC087721.2 CCNB2 EBP CCNB1 ACAA2 HADH PAIP2B COX11 HGSNAT ABCC4 SUN2 CBX6 CMTM4 CBX5 GGH CMTM6 CAV1 GALNT1 DNM1 TMEM213 RCN2 RBL2 MYH9 MNS1 CCDC191 BMPR1B GPSM2 IDI1 RTN3 HMGB3 SLC3A1 LMNB1 HMGB1 SLC40A1 DBI HS2ST1 LASP1 UPK1B SARAF VILL MBTPS1 ANXA13 PPP2R3A LSS FAM168A TRAPPC6A CAT TBC1D5 MVD GALM RERG CCDC167 ABCD3 STEAP4 TMEM41B PALM3 USP13 YBX1 HMGCR MSMO1 NCMAP CRYZ NT5DC2 OXCT1 ARHGDIB POLD2 PALMD MAPK3 GET1
Up-regulated by MHV-A59 in murine liver 3d from GSE146074 GBP7 GBP6 GBP9 H2-AA PSMB9 PSMC6 PSMC4 PSMC5 PSMC2 PSMC3 VIM PSMC1 HNRNPC IGTP RAN HNRNPU ACNAT2 CLDN2 TM9SF4 RNASET2B PSMD7 PSMD6 PSMD3 PSMD4 CAPNS1 PSMD1 PSMD2 S100A10 GBP3 ST3GAL1 GBP2 S100A11 GBP4 H2-D1 ABCA1 ATP6AP1 RMDN3 CLPX MOV10 SLC6A6 NPLOC4 EIF6 SERPING1 PLBD1 LGMN PSME2 PPT1 HYOU1 PSME1 CFB PID1 C4BP GLDC CFH TAPBPL RAPH1 GVIN1 HPX C2 TSKU C3 RNF213 SCPEP1 PLAC8 C9 HMOX1 SERPINH1 JUNB TRP53INP1 SDF2L1 GSTM4 LYN GSDMD GSTM3 GSTM2 ANXA2 GSTM1 ANXA5 H3F3B CP TUBB2A VWA5A COL3A1 BHMT MMP19 MRAP GM4951 GAS6 GSTM6 IL18BP ARF4 ABHD4 RPN1 SERPINA10 ARPC1B ZC3HAV1 LITAF SERPINA7 LDHD SH3BGRL3 STAP2 STAT1 STAT2 STAT3 MOCOS LAPTM5 RNASE4 LRG1 TUBB4B PSMA6 MS4A6C PSMA7 COL4A1 PSMA4 PSMA5 PSMA2 COL4A2 PSMA1 ARF6 APCS GRN OGFR GSTP1 SNX10 PSMB7 IFIH1 TMSB4X PSMB8 PSMB5 PSMB6 TUBA1B PSMB3 NAMPT PSMB1 PSMB2 ANXA7 TSPO SLC16A1 GSR USP5 TPM4 TPM3 TAP2 SERPINA3N TAP1 PNRC1 NSFL1C CXCL10 MORF4L2 FCGR4 PLOD1 LY6A MAPKAPK2 TRAFD1 LY6E LY6D HC IL6ST SQSTM1 SEC24D S100A9 S100A8 H2-K1 HP PROS1 GM4070 CLU HSP90B1 LAPTM4A TUBB5 FLNA CFL1 IK MAP2K1 M6PR ARPC5 PGD HOPX DDOST LCN2 XAF1 H2-AB1 IFNAR2 LRRC59 CD274 CPB2 CD151 SAT1 SERPINA3F SERPINA3G ESD G3BP2 TMSB10 IL13RA1 ACTR3 UGT2B35 ACTR2 UGT2B34 REXO2 HSP90AA1 DTX3L AMBP TXNRD1 RAD23B TNFRSF1A AHSA1 CES1B NPC2 LCP1 IFI27L2B IFI27L2A SHC1 UBR4 TARS APIP PSAP CAPZB LBP EMILIN1 MCL1 SLC13A3 ERAP1 SLC25A17 PKM CDC34 ANG EIF3D PIK3AP1 ITGB2 TRIM30A CRP SRXN1 WDR1 APOL9B UNC93B1 APOL9A HSP90AB1 H2-Q7 TCIRG1 H2-Q6 U2AF1 H2-Q4 CCL9 PTER RNPEP DHX58 UBQLN1 CCL2 WFDC21 ACTN4 ENTPD5 RSAD2 KRT8 PPA1 MARCO ALDOA_1 KARS IFI27 TLN1 PFN1 CALM1 IFITM2 ITIH4 IFITM3 ITIH3 FGL1 FGL2 SLC35B1 TIFA GLRX UBE2L6 PSMB10 LY6C2 PNP HERC6 ACTB C4B B2M CYP2C70 XBP1 TMED9 H2-EB1 ST6GAL1 MANF IRGM2 IRGM1 PRG4 IFI47 UGT1A6A UGT1A6B IFI44 PARP14 PARP12 TAGLN2 CD302 ITM2C ATP6V1B2 LST1 LPGAT1 SPARC ACSM1 IFI35 CYP3A13 IFIT2 IFIT1 ICAM1 IFIT3 HELZ2 LGALS3 GM49342 APON TREX1 APOF LGALS9 OASL1 LGALS8 OASL2 CTSB SEC13 PTGES3 NMI BST2 UGDH KRT18 COPG1 TAX1BP1 CLPTM1L CRELD2 CALR AARS RAB5C CLIC4 CTSZ OAS1A C8A C8B TOR1AIP2 OAS1G TOR1AIP1 CTSS STIP1 SNX2 CTSO RAP1B SLC22A18 CTSL HTATIP2 QSOX1 FCER1G UBXN4 TMED7 CTSD CLIC1 CTSC TGTP1 CCT3 CD53 CAP1 ATP6V1G1 CD52 TGTP2 DBNL TMEM176A GBF1 TMEM176B PARP9 SPCS2 SAA2 CMPK2 SAA3 SAA1 EPPK1 CD47 DNASE1L3 VMP1 ORM2 C1QA CSTB ORM1 RAB7 CD5L ORM3 GNAI2 XDH CIAO2A ZBP1 CD74 C1RA IFI204 MPEG1 SHISA5 ATP1B3 TYROBP ZNFX1 AXL SELENOT SELENOS DNAJB11 TGFBI IFIT3B CAPZA1 CHMP4B SEPT2_1 CD68 GRINA SLFN2 SAA4 SLFN4 ZFP36L1 RRBP1 IFI211 SAMD9L SELENOK CNDP2 TBRG1 C1S1 COTL1 HIST1H2AB PDIA4 PDIA3 IIGP1 DDX58 CYBA TDRD7 ISG15 SDCBP PDIA6 PDIA5 CAPRIN1 OSTC CDHR5 RSRP1 BLVRB TXN1 ISYNA1 VCP COPB2 LGALS3BP ACTG1 SPPL2A SLC41A2 PSEN2 TGM2 NARS HSPA5 MSN MT1 MT2 TAPBP CALHM6 IRF1 DAP ACOX2 MYH9 IRF7 PSMD11 PSMD13 NNMT CXCL9 PSMD12 YWHAB PSMD14 UBA7 HSPB8 SLC3A1 CXCL1 AGPAT2 PLD4 DPP3 LASP1 ADGRE1 DPP9 CASP7 AOX1 SARAF GM43302 FGA FGB HIST1H2AP LSR YWHAZ ALDH1A7 GBP10 ALDH1A1 HIST1H2BG VDAC3 HIST1H2BB STEAP4 H2-T23 DDC RTP4 H2-T22 MVP ATP2A2 USP18 SAMHD1 ARHGDIA KYNU BPNT1 COLGALT1
Down-regulated by MHV-A59 in murine liver 3d from GSE146074 GAMT STARD4 IAH1 STARD5 STARD7 DHDH EVA1A METTL7A1 TEF RBP4 ACOT3 UQCRC1 RPL28 ENPEP MT-ND5 MT-ND6 MT-CO1 RETSAT HPGD MT-CO2 SZRD1 MT-ND3 ABAT MT-ND1 MT-ND2 UGP2 GATD3A SERPINF1 S100A13 RPL14 SULT2A8 RABAC1 ASPDH ABCA3 GABARAPL1 RPL41 ABCA6 STARD10 NR1D1 NR1D2 PTP4A2 EHD3 HOGA1 CYP2A4 PRXL2C HPD PRKD3 MT-CO3 AMY1 PHB2 RPL32 ATP5C1 LIPC MRPL14 MRPL12 RPL8 PRDX4 CYP2B9 GCSH PRDX6 RPL36 AGMO RPL39 MMUT SLC19A2 XYLB RDX PDHA1 BBOX1 TCP1 MRPL28 AGTR1A SIRT3 GPRC5C KAT2B ADI1 DPYD BHLHE40 PAH KLKB1 MGLL TMEM106B NR1I3 ECHS1 OAZ1 SLC7A2 MRPL34 SERPINA6 SERPINA1B SERPINA1D SERPINA1A RPS27A HSD11B1 ELOVL2 PPARA ELOVL5 AHSG PKLR GSTO1 ACOT12 ACOT13 NR1H4 FMO3 AGMAT F5 DHRS4 BAAT OAF TMEM56 BDH1 ETNK2 HADHA LPCAT3 RGN CYP2E1 SLC29A1 LAMTOR4 GCHFR FABP1 NDUFA13 DPYS NDUFA10 PIGR AFM FCGRT NDST1 MRC1 AIFM1 MLYCD SLC17A2 DEPTOR MFSD4B1 FADS2 FADS1 TLE5 BCHE SLC16A2 RPS8 NNT_1 ABCA8A RPSA FAM91A1 CXCL12 PINK1 UQCRQ ADTRP UOX CLEC4G RAB1B SLC27A2 IGFALS HJURP PAPSS2 DDRGK1 CYP2D10 PIPOX SPP2 SC5D CHP1 WDTC1 SLC25A47 IGFBP2 GOT2 PCYT2 IGFBP4 EEF2 CYP4F15 CYP2D26 METTL26 SLCO1A4 REEP6 CYP2D22 NOP10 SLC27A5 AC118710.1 AK2 GSTT3 AK4 GSTT2 GSTT1 TM7SF2 FBXO21 UQCRH SLCO2B1 RAB43 AMDHD1 MPC1 MPC2 HYI EIF4EBP2 UGT3A2 UGT3A1 SLC38A4 SLC38A3 HMGCS2 APOA2 INMT TPRKB NDUFC2 APOA5 NPC1 SORD NIPSNAP1 MUP3 CYB5A CES2A CUL4A CES1D PCCB CES1E CES1F RPL37A ALB ECHDC2 DCTPP1 TMBIM6 EIF4B NDUFB9 FECH NDUFB8 COL14A1 NDUFB6 NDUFB5 ATP5K ATP5D APH1A SLCO1B2 PLTP ATP5B ALAD CES2E ATP5E COX4I1 RDH16 UGT2A3 SLC37A4 HGFAC CPT1A IDH3G NDUFA6 UGT1A1 NDUFA4 RPL35A APOC4 NDUFA1 CTDSP1 APOC1 SUCLA2 TST APOC2 SLC25A11 SLC25A10 ALDH9A1 SLC25A13 AGXT EIF4A2 SLC47A1 RNF13 DMGDH FURIN ETFA ETFB RPL10A HSD17B11 TSPAN12 BPHL FTCD TTR HECTD1 SCRN2 GM2A SLC25A20 UGT1A5 ARL5A UGT1A9 IDH3B PEX19 1810058I24RIK KYAT1 ECH1 ACSL1 TTC39C GSTZ1 SOAT2 CYP2A22 HIST1H4H ULK1 SUCLG1 KYAT3 RETREG2 PBLD1 PBLD2 EPAS1 PANK1 CCNI SLC46A1 AQP9 UQCR10 CISD1 UQCR11 ITIH2 AQP1 COX8A TMEM50A ATP5O_2 MIF CYP3A25 COX7A2L MSRA POR RPS28 AKR1C14 RPS21 PLPP3 GCDH RPS25 PEMT TMEM183A FAAH HDAC11 ACSM3 ECI1 ECI2 CYP3A11 RPS16 RPS15 RPS17 PDK1 ACAD11 DECR1 NADK2 PDK2 DECR2 ACAD8 SLC10A1 NME3 COX6C CYP2C29 CLDN12 ALDH6A1 PTPRD CYP2C23 PTPRB CFHR2 ALDOB VWA8 ATP5MD NRN1 COX7B TMPRSS6 ACY3 CCDC107 CROT PCSK6 C8G CYP2C38 CAR5A CYP2C37 CYP2B13 NAT8F1 SCAP KIF1C SPTBN2 MMD VKORC1 GCH1 GCGR MT-ATP8 RDH16F2 SLC22A26 NEDD4 GCAT_1 MT-CYTB NRP1 ECM1 AHCY RDH9 ZDHHC9 PTMS ERG28 HERPUD1 GYS2 MT-ATP6 ACADM ACADL STBD1 CYP2A12 STAB2 CYP2C50 ACADS ABCG8 CAR3 PRLR SDHD TIMM8A1 SDHA SELENOP DPM3 ALDH4A1 SELENOO GPD1 GM4756 WBP1L OTC ABCG5 IVNS1ABP KLB NDUFB11 NDUFB10 RGS16 PEBP1 HSD17B6 ACAA1B NDRG2 COX6A1 GULO RXRA RELN CCND1 PERP DNAJC22 C1RL EMC6 CAR8 NDUFV3 NDUFV1 TTC38 IDH2 EPHX2 HBB-BT PROC ALDH3A2 H1F0 FMC1 DDAH1 SLC2A2 FCNA AKR7A5 EBP CYC1 ACAA2 HADH CMTM8 BCKDHA CYP4A10 ABCC6 CYP4A14 ABHD14B PRODH2 COQ9 EPN1 PPP2R5A HIGD2A GALK1 LPIN1 ACOX1 PEX6 NDUFS2 NDUFS1 LPIN2 GRSF1 ABCB4 ABCB6 PROZ ETFDH EHHADH HMGB1 HBA-A2 2310039H08RIK DBP GHR RPL10-PS3 AFMID HIST1H1E GGACT GRCC10 H2AFZ SUOX USF2 PPDPF SARDH CHDH GALM ABCD3 ACADVL POLDIP2 PCTP ATP5G3 ATP5G2 CRYZ HMGCL RPS4X DDT CHCHD3 RMND5A GM5617 GNA12 BNIP3 VSIG4 CHCHD2
Up-regulated by MHV-A59 in murine liver 5d from GSE146074 GBP7 GBP6 GBP9 GBP8 MX1 PSMB9 COL1A2 PSMC6 PSMC4 PSMC5 PSMC2 CD9 PSMC3 VIM IGTP RAN HNRNPU RNASET2A ACNAT2 ASAH1 RNASET2B RNF114 PSMD6 PSMD4 CAPNS1 S100A10 GBP3 GBP2 GBP5 S100A11 GBP4 H2-D1 ATP6AP1 CLPX MOV10 EIF6 LGMN PSME2 PSME1 CFB C4BP LILR4B TAPBPL GVIN1 HIF1A PLA2G7 CFP HPX C2 TSKU RNF213 PLAC8 PRDX5 HMOX1 SERPINH1 JUNB TRP53INP1 LYN GSDMD PNPT1 JUN ANXA2 ANXA5 H3F3B CP TUBB2A COL3A1 IL18BP ARF4 SERPINA10 ARPC1B IQGAP1 LITAF SERPINA7 HIST2H2AA2 MS4A4C CSRP1 SH3BGRL3 SSR2 HIST2H3C2 TIMP1 DYNLL1 STAT1 STAT2 STAT3 MOCOS LAPTM5 BGN LRG1 SERPINB9 TUBB4B PSMA6 MS4A6C PSMA7 MS4A6B FABP4 COL4A1 PSMA4 PSMA5 PSMA2 COL4A2 PSMA1 HCLS1 LAMTOR5 ARF6 APCS CCL12 GRN HEXA CDKN1A OGFR GSTP1 SNX10 MS4A6D IFIH1 TMSB4X PSMB8 PSMB5 PSMB3 NAMPT PSMB4 PSMB1 PSMB2 ANXA7 TSPO SLC39A1 SLC16A1 GSR TPM4 TPM3 TAP2 SERPINA3N TAP1 PNRC1 CXCL10 FCGR1 MORF4L2 FCGR4 FCGR3 LY6A MAPKAPK2 TRAFD1 LY6E S100A6 LY6D SNRPF S100A4 SQSTM1 PTPN6 S100A9 S100A8 H2-K1 HP PROS1 GM4070 LAPTM4A TUBB5 RNF19B FLNA CFL1 SPP1 SLC15A3 MAP2K1 M6PR ARPC5 PGD MYD88 ARPC3 ARPC4 ARPC2 MED21 IL4RA LCN2 XAF1 TRIM12A IFNAR2 LRRC59 CD274 CPB2 CD151 CORO1A SAT1 CORO1B SERPINA3F SERPINA3G G3BP2 EFHD2 PIM1 IGFBP7 TMSB10 ACTR3 ACTR2 HSP90AA1 DTX3L EIF2AK2 AMBP RAD23B TNFRSF1A AHSA1 NPC2 LCP1 TMBIM4 IFI27L2B IFI27L2A APIP PSAP CAPZB MCL1 MARCKSL1 GZMB GZMA DNAJA2 PKM CDC34 P2RX4 PIK3AP1 ITGB2 TRIM30A CEBPB ITGB1 SRXN1 WDR1 APOL9B UNC93B1 APOL9A TRIM30D H2-Q7 TCIRG1 H2-Q6 H2-Q4 SUMO2 CCL7 RNPEP CCL6 DHX58 CCL4 CCL2 UPP1 POLR2K POLR2L RSAD2 KRT8 PPA1 ACOD1 HIST1H4A MARCO ALDOA_1 IFI27 HIST1H4J GM49339 TLN1 CALM3 PFN1 CALM1 EIF1A IFITM2 IFITM3 ITIH3 IFITM1 FGL1 FGL2 TIFA MNDAL UBE2L6 PIRB MYL12B PSMB10 LY6C2 MAGOH PNP HERC6 ACTB B2M WFDC17 XBP1 TMED9 SLC11A1 IRGM2 IRGM1 PRG4 IFI47 IFI44 VASP PARP14 PARP12 MYL12A PARP10 VNN3 TAGLN2 ITM2C PLA1A ATP6V1B2 LST1 IL1RN SPARC IFI35 IFIT2 IFIT1 ICAM1 IFIT3 HELZ2 LGALS3 GM49342 HIST1H3B LGALS1 HIST1H3G TREX1 CD14 LGALS9 HIST1H3C OASL1 OASL2 HIST1H3F CTSB WARS NMI RHOG RHOB RHOC BST2 PTPRC PTMA THEMIS2 KRT18 TAX1BP1 CRELD2 RAB5C CLIC4 SDC3 SLC35F5 CTSZ OAS1A PHF11B OAS1G TOR1AIP1 CTSS PHF11D STIP1 SOCS3 SNX5 RAP1B SEC61B CD38 GM10800 FCER1G CTSD CLIC1 CTSC TGTP1 CCT3 CD53 CAP1 ATP6V1G1 CD52 CCT2 TGTP2 DBNL TMEM176A RANBP1 TMEM176B HCK PARP9 HIST2H3B SPCS2 SAA2 CMPK2 SAA3 SAA1 7-SEP CHIL3 CD47 DYNC1H1 VMP1 C1QC C1QB ORM2 C1QA CSTB ORM1 GBA CAPG CRIP1 AIF1 ORM3 GNAI2 SERP1 XDH CIAO2A IFI209 ZBP1 C1RA IFI205 IFI204 MPEG1 SHISA5 ATP1B3 TYROBP VCAM1 ZNFX1 CAPZA2 TGFBI IFIT3B CAPZA1 SELENOW CHMP4B SEPT2_1 CD68 GRINA SLFN2 SAA4 SLFN5 SLFN4 RRBP1 IFI211 SAMD9L CNDP2 TBRG1 COTL1 HIST1H2AE HIST1H2AG HIST1H2AB HIST1H2AD IIGP1 ATP6V0C DDX58 OST4 BUD31 CYBB CYBA ISG15 SDCBP SEM1 OSTC CHMP5 TXN1 LGALS3BP ACTG1 DDX60 TGM2 UBB UBD NARS SIRPA MLKL SRGN HSPA5 MSN MT1 MT2 HMGA1 TAPBP CALHM6 IRF1 NFKBIA OAS3 IRF8 MYH9 IRF9 IRF7 PSMD13 CXCL9 NID1 PSMD14 UBA7 HSPB8 SLC3A1 CXCL1 TNFAIP2 NT5C3 PLD4 HK3 GM43302 HIST1H1A HIST1H1B YWHAH HIST1H1C FGB HIST1H2AP YWHAZ SOD2 GBP10 HIST1H2BG VDAC3 HIST1H2BC HIST1H2BB STEAP4 H2-T23 RTP4 H2-T22 PLEK HIST1H2BK HIST1H2BJ HIST1H2BM MVP DDX24 USP18 SAMHD1 ARHGDIA ARHGDIB NOS2
Down-regulated by MHV-A59 in murine liver 5d from GSE146074 SDR42E1 GAMT STARD4 IAH1 STARD7 GLYCTK DHDH EVA1A UPB1 METTL7A1 CCS TEF RBP4 MTHFD1 UQCRC2 CYP1A2 ACOT3 UQCRC1 MT-ND5 MT-ND6 MT-CO1 RETSAT HPGD MT-CO2 ATP5A1 MT-ND3 ABAT MT-ND4 TOB1 MT-ND1 MT-ND2 UGP2 GATD3A SERPINF1 SULT2A8 ASPDH ABCA6 STARD10 NR1D1 6-MAR NR1D2 KLF15 GJB1 EHD3 CYP2A5 HOGA1 CYP2A4 HPD PRKD3 MT-CO3 GNE AMY1 OGDH PHB2 MUP22 MT-ND4L ATP5C1 LIPC PRDX4 CYB5R3 ADH5 CYP2B9 SULT1A1 GCSH PRDX6 TDO2 ADH1 MMUT XYLB LYPLA1 RDX PDHA1 BBOX1 MRPL28 AGTR1A SIRT3 ADI1 DPYD PXMP2 BHLHE40 PAH KLKB1 MGLL TMEM106B ADK NR1I3 IQGAP2 GPT ADIPOR2 ECHS1 OAZ1 SLC7A2 SERPINA6 SERPINA1B SERPINA1D TTPA HSD11B1 ELOVL2 PPARA ELOVL5 CLUH PKLR GSTO1 SQOR ACOT12 ACOT13 NR1H4 FMO3 DHRS1 GNMT AGMAT F5 BAAT OAF ABCB11 TMEM56 BDH1 ETNK2 IVD AADAC LPCAT3 CYP2E1 SLC29A1 GCHFR FABP1 OAT SERPINC1 DPYS NDUFA10 AFM PYGL ASGR1 ASGR2 MCEE NDST1 AIFM1 MDH1 SLC17A2 DEPTOR MFSD4B1 FADS2 FADS1 SEC24A TLE5 BCHE SLC16A2 ATP11C SEMA4G NNT_1 ABCA8A AGT YIF1A CXCL12 PDCD4 UOX SLC27A2 AKR1D1 IGFALS PAPSS2 CYP2D10 PIPOX SPP2 SC5D PMPCB CHP1 WDTC1 IGFBP2 SLC38A2 GOT2 PCYT2 IGFBP4 EEF2 CYP4F13 CYP4F15 CYP2D26 METTL26 SLCO1A4 REEP6 CYP2D22 MLXIPL PCYOX1 NIT2 SLC27A5 AC118710.1 PECR AK2 AK3 GSTT3 GSTT2 GSTT1 UQCRH SLCO2B1 AMDHD1 MPC1 MPC2 HYI UROD EIF4EBP2 HACL1 UGT3A1 SLC38A4 SLC38A3 GPX1 CYB5B HMGCS2 APOA2 INMT TPRKB APOA5 NPC1 SORD NIPSNAP1 CYB5A CES2A CUL4A PCCB CES1E ALB ECHDC2 ECHDC3 DCTPP1 TMBIM6 ACO1 EIF4B SLC25A1 NDUFB9 NDUFB5 SHMT2 SHMT1 ATP5D PLTP FGGY ATP5B ALAD TKFC COX4I1 ME1 RDH16 UGT2A3 SLC37A4 HGFAC NDUFA9 CPT1A IDH3G UGT1A1 AMT APOC4 CTDSP1 SUCLA2 TST APOC3 SLC25A10 ALDH9A1 SLC25A13 AGXT EIF4A2 SLC47A1 RNF13 DMGDH FURIN ECE1 ETFA ETFB UROC1 HSD17B11 TSPAN12 HSD17B10 BPHL FTCD TTR GM2A UGT1A5 UPP2 SLC25A23 IDH3B KYAT1 ECH1 ACSL1 CIDEB PEX16 GSTZ1 ASS1 CYP2C69 CYP2C68 LACTB2 CYP2A22 NSMF SUCLG1 KYAT3 ALDH8A1 RETREG2 PBLD1 PBLD2 PANK1 CCNI AQP9 CISD3 CISD1 UQCR11 HS6ST1 ITIH2 AQP1 SEPHS2 TMEM50A ATP5O_2 CYP3A25 SLC6A12 CMBL MSRA AKR1C12 POR AKR1C14 TLCD2 PLPP3 GCDH PEMT TMEM183A FAAH ECI1 CYP3A11 PTTG1IP ACSM5 CYP4V3 PCBP2 ASL ACAD11 NADK2 PDK2 DECR2 AASS ACAD8 SLC10A1 MTSS1 COX6C CYP2C29 PTPRF ALDH6A1 HAL CYP2C23 CFHR2 TECR ALDOB VWA8 NRN1 TMPRSS6 MAOB ACY3 CCDC107 KHK PCSK6 C8G CYP2C38 CAR5A CYP2C37 SEC14L2 CYP2B13 NAT8F1 SCAP KIF1C PCK1 VKORC1 GCH1 GCGR AKR1C6 CYP8B1 MT-ATP8 RDH16F2 NEDD4 GCAT_1 MT-CYTB NRP1 ECM1 AHCY RDH9 MIA2 ZDHHC9 PTMS NUDT7 ERG28 GYS2 MT-ATP6 STBD1 CYP2A12 CYP2C54 STAB2 CYP2C50 ACADS G6PC CAR3 PRLR PHYH HSD3B3 RARRES2 SDHD SDHB FAH SDHA SELENOP DPM3 ALDH4A1 GPD1 GSTA3 WBP1L SIDT2 OTC ABCG5 NDUFB10 RGS16 HAAO HSD17B6 ACAA1B NDRG2 GULO RXRA HSD17B2 PERP CAR8 NDUFV1 IDH1 MGAM ACBD5 GCKR TTC36 HGD IDH2 EPHX2 MPST HBB-BS HBB-BT ACSF2 PROC ALDH3A2 PRPF8 H1F0 FMC1 DDAH1 HAMP2 SLC2A2 AKR7A5 EBP CYC1 ACAA2 HADH PRODH CMTM8 BCKDHA PAICS ABCC2 MUP11 CYP4A10 ABCC6 CYP4A14 ABHD14B PRODH2 COQ9 EPN1 PPP2R5A HIGD2A GALK1 LPIN1 CPS1 ACOX1 NDUFS2 NDUFS1 LPIN2 ABCB6 HBA-A1 PROZ ETFDH EHHADH HBA-A2 2310039H08RIK DBP GHR AOX3 MKNK2 ISOC1 HIBCH GRCC10 DCXR SUOX USF2 CAT MAT1A PPDPF SARDH CHDH VDAC1 GALM ABCD3 POLDIP2 PCTP ATP5G1 HMGCL DDT RMND5A CBS GNA12 BNIP3 SCARB1
Up-regulated by MHV-A59 in murine spleen 3d from GSE146074 GBP7 GBP6 GBP9 FNBP4 GBP8 MX1 RPL21 RPL24 RPL23 DEK NUP210 HSPE1 COL1A1 VIM RPL26 HNRNPF RPL28 IGTP RPL27 RPL29 CYFIP2 CGGBP1 SF3B3 RPL11 RPL12 ATP5A1 SZRD1 RNF114 GPBP1 2610507B11RIK AKT1 RPL14 PSMD2 RPL19 SF3B1 GBP3 GBP2 GBP4 EPSTI1 H2-D1 DAXX PRKCD BAZ1B PRRC2C FAM111A BIN2 LGMN PSME2 HYOU1 PSME1 FERMT3 CFB SET RPL6 RPL31 RPL4 RPL32 RPL34 ENO1 GNS SMC4 RPL9 GVIN1 CFP C3 LARP1 RNF213 PLAC8 RPL36 RPL39 PLCG2 LYN BTF3 GSDMD FCRL1 SSR3 IL10RA PAX5 TCP1 COL3A1 ARF5 ARPC1B ZC3HAV1 CLTC IQGAP1 MS4A4C LDHA CSRP1 SH3BGRL3 MBNL1 STAT1 MDH2 STAT2 BGN TUBB4B COX6B1 PSMA7 MS4A6B COL4A1 MYBBP1A ETNK1 PSMA1 HCLS1 GRN RPLP0 SMG1 OGFR TUT4 PSMB8 PSMB6 TUBA1B SMCHD1 SETD2 PTPN1 CD164 TPM4 TPM3 RPS7 POU2AF1 TAP2 TAP1 HNRNPAB PNRC2 IFIT1BL1 CXCL13 LY6A MAPKAPK2 TRAFD1 KAT6A LY6E NCF1 PHIP TRIM34A PTPN6 FKBP4 SNRPB S100A9 ROCK1 SLA H2-K1 GM4070 BZW1 HSP90B1 LAPTM4A TUBB5 LAMP1 CFL1 IK MAP2K1 M6PR MOB1A ARPC2 NCL EIF4G1 BIRC6 TRIM12A RSL24D1 EIF4G2 CD274 CNP H2-M3 SAT1 CORO1B SERPINA3G TPR EIF2S3X PAPOLA BTLA PPP1R12A ACTR2 EIF5A HSP90AA1 DTX3L EIF2AK2 PA2G4 NPC2 LCP1 PPP1R12C SERINC3 IFI27L2A SLC25A3 NUFIP2 NDUFB7 LYZ2 LRRK2 PTPN22 UBR4 NLRC5 ITPR1 ATP5B PSAP ATP5H PGK1 TNFRSF14 EIF3A CR2 ATRX RPL35A RPL23A PTBP3 PKM DNAJA1 MYO1F EVI2B EIF3M IMPDH2 P4HB EVL CLEC2D PIK3AP1 SLC25A5 EIF3E EIF3B GAPDH NOP56 EIF3C ITGB2 TRIM30A NRROS EIF4A1 WDR1 UNC93B1 HSP90AB1 TRIM30D H2-Q7 TCIRG1 H2-Q5 H2-Q6 U2AF1 H2-Q4 ITGAL COCH FYB SUMO2 SUMO1 DHX58 TRIM25 HNRNPA3 RPL7A IDH3B HNRNPA1 SSB SP110 RSAD2 PML CCT6A XRN2 ALDOA_1 TLN1 PFN1 CALM1 MTPN IFITM3 SP100 MYCBP2 IL2RG MNDAL PSMB10 LY6C2 HERC6 ACTB C4B B2M CCNL1 XBP1 TMED9 TALDO1 IRGM2 IRGM1 IFI47 VASP PARP14 RPS27 BC005537 STAG2 BANK1 WNK1 RPL27A TAGLN2 RPS20 RPS23 ITM2B RPS25 RPS24 SPARC VARS ANP32B ARL6IP1 IFI35 IFIT2 IFIT1 IFIT3 CD79B HELZ2 RPS18 RPS17 HIST1H3B FTH1 HIST1H3C OASL1 RPS11 OASL2 CTSB RHOA PTGES3 AKR1A1 NME2 BST2 PTPRC PTMA THEMIS2 CALR DAZAP2 TRAM1 CLIC4 DHX9 SDC3 SDC4 TOP2A CTSZ CSDE1 CTSS ILRUN STIP1 SNX5 HINT1 RAP1A SNX2 RAP1B CNTRL CD38 TMED2 FCER1G SPTBN1 GM49369 CTSD CLIC1 CTSC CCT4 CCT3 CD53 CAP1 ATP6V1G1 RANBP2 NPM1 CD52 CCT2 TGTP2 HCK PARP9 HIST2H3B HNRNPA2B1 CANX TRIP12 HDGF 7-SEP CD47 DYNC1H1 SUPT16 C1QC C1QB C1QA COX5A GDI2 TNFRSF13C CD5L NUCKS1 MKI67 AIF1 CST3 SERP1 SCD1 CCT8 CCT7 FILIP1L CCT5 IFI209 ZBP1 IFI206 IFI203 IFI204 MPEG1 SHISA5 SDHD TYROBP LAX1 GM11808 ZNFX1 PPIA ARHGAP30 SELENOT CAPZA2 TGFBI IFIT3B CAPZA1 CHMP4B PPIB SLFN8 SLFN2 SLFN5 SLFN4 GIMAP4 IFI213 RRBP1 GIMAP6 ATP1A1 SAMD9L FBL ZFP36L2 TMEM123 PCNP DOCK10 CCND2 KIF5B SLFN1 HIST1H2AB PDIA4 PDIA3 IIGP1 DDX58 NONO DSTN CYBB CYBA ISG15 PDIA6 SEM1 SELL UBA1 MFGE8 TXN1 FCMR VCP ACTG1 ARHGAP17 TGM2 UBC UBB SIRPA ZC3H15 USP25 HSPA9 SRGN HSPA5 HSPA8 MSN ARAP1 HSPA4 NAP1L1 TAPBP IRF1 OAS2 OAS3 EEF1G IRF8 IRF7 DOCK2 MS4A1 YWHAG UBA7 HMGB2 ADAR PLD4 HK3 CASP8 PSME2B RPL10-PS3 HIST1H1E SP140 BLNK ZC3H7A 9930111J21RIK1 HIST1H1A HIST1H1B 9930111J21RIK2 GM2000 D8ERTD738E H2AFZ SSRP1 YWHAZ USF1 HIST1H2BB H2-T24 H2-T23 H2-T22 PLEK HIST1H2BK MVP DDX24 YBX1 DDX21 HSPD1 USP18 SAMHD1 GPI1 MAT2A SEC61A1 ARHGDIB GNA13 IGLC2
Down-regulated by MHV-A59 in murine spleen 3d from GSE146074 FNBP1 RPL22 H2-AA GTPBP2 HNRNPM CD2 MYL6 HNRNPK HNRNPL MARCKS DDX39B RBCK1 HNRNPC RPL22L1 MT-ND5 MT-ND6 MT-CO1 AHNAK MT-CO2 RPL13 ARPC5L MT-ND3 MT-ND4 ADCY7 MT-ND1 DCAF7 MT-ND2 FAM120A NXF1 FAM168B MTA2 PABPN1 PIP4K2A RPL15 STAT6 RPL17 RPL18 SF3B2 JUND PRPF38B RPL41 EDEM1 PRKCB PRRC2A EIF1 PTP4A2 RPS27RT EIF5 SETX PRKAR1A PSME3 MT-CO3 SF1 PRR13 CHST3 ATF4 RPL5 CDC42SE2 CDC42SE1 TRIR PHB2 RPL3 RPL30 MT-ND4L ITSN2 BAZ2A RPL7 ELK4 RPL8 PPP4C SPIB HMOX1 RPL37 RPL38 TRP53INP1 H3F3A ATPIF1 ANXA6 ASH1L MRPL24 CS GLUD1 APBB1IP ITPKB RAPGEF1 CRLF3 DENND1C WDR26 BTG2 GRAMD1A BTG1 ARF1 CLTA RASAL3 OAZ1 HIST2H2AA2 SIGLECG CCL21A RPS27A BRD2 IFNGR1 CSNK2A1 LAPTM5 PKN1 PTPRCAP ARF6 RPLP2 TCF25 RPLP1 TCF20 VSIR TMSB4X ING4 FGFR1OP2 RACK1 JAK1 TMEM14C TLE5 MAP3K1 USP7 RPS8 IST1 RPS9 RPS6 PRPF4B HIPK1 PNRC1 RPSA PPP1CA NRBP1 MORF4L1 SRSF3 FKBP8 LY6D PDCD4 SRSF5 S100A4 SRSF6 SRSF7 UTRN PPP1R15B DGKD ODC1 SRRT SRSF1 DGKA ZFP207 SRSF2 UCP2 AUP1 CLU ACAP1 FGD2 PPP1CC ABLIM1 NSD1 H2-DMB2 H2-DMB1 FLNA SH3BP5 RPS5 RPS2 RPS3 SPOP SWAP70 PNISR BNIP3L CYB561A3 ARPC5 EEF2 MAFB NFKB1 NFKB2 MAN1A ARPC4 IL4RA FCER2A H2-AB1 CSF1R BLK KMT2E NOTCH2 MAZ KMT2D FAM107B TMEM131L HVCN1 CORO1A ARHGAP4 UQCRH STK10 SNN HNRNPDL TXNDC5 EIF4EBP2 ANKRD11 IGFBP7 TMSB10 RBM12B2 GPX1 ACTR3 ITGA4 GPX4 RPL13A OGA SON CD24A DNAJC7 RPL37A TMBIM6 LAT EIF4B CELF1 ATP5L ITPR3 BRK1 LBH SPN PPP6R1 ATP5E CAPZB RPL36A ACP5 COX4I1 EIF4H B4GALNT1 H2-OB WASF2 CIITA MCL1 SORL1 CDC42 KLF2 LCK MYO1C RPS3A1 EIF3K TXNIP EIF3H ANAPC5 EIF3F NOP53 SMAP2 MYO1G TPT1 RNF10 ITGB1 EIF4A2 ALAS2 LSP1 AKAP8L PIK3CD LENG8 U2AF2 ARRB2 LRMP RPL10A TSPAN13 HECTD1 POLR2A GM2A UBTF TRIM28 CSK ITGB7 HNRNPA0 PLEKHA2 HIST1H4M CNBP ACTN1 1-SEP SRRM2 MARCO OTULIN HIST1H4H CALM3 HIST1H4F STX16 CCNI STXBP2 AKAP8 PNN RPL36AL BSG CCNL2 H2-EB1 TENT5C COX7A2L WAPL FCHSD2 CCDC88C CCDC88B RPS26 RPS29 PIK3R1 GRAP GRB2 EZR ITM2C JPT1 MACF1 NUMA1 JMJD1C IKZF1 RPS16 INPP5D GOLGA4 RPS15 CD79A HIST1H3A RPS19 SNRNP70 PCBP2 DHX15 CD19 DHX16 RCC2 KIF21B GLUL APOE HIST1H3I RPS10 ZFP740 RPS14 RPS13 VAV1 VAV2 SLTM PABPC1 GRIPAP1 MZB1 SLC44A2 ARHGEF1 LIMD2 LIMD1 JCHAIN UGCG SAFB2 MLEC EPS15 CTSH GM10800 CD37 GM10801 MAP4K2 MAP4K1 DBNL SYK PARP1 ERBIN ZDHHC18 MYO9B MT-ATP8 HNRNPUL1 ESYT1 HNRNPH1 HNRNPUL2 STK17B MT-CYTB SIPA1 SELPLG TRAF3IP3 RAB7 GDI1 CTNNB1 GNAI2 AKAP13 MT-ATP6 FTL1 RPL18A CXCR4 RAC2 SPTAN1 CD55 TBC1D10C ANKRD13A CD74 CD72 ZFC3H1 ATP1B3 HUWE1 VCAM1 SDHA GM10718 SELENOP EEF1A1 DOK3 AXL EHBP1L1 FAU SELENOW WDFY4 BRWD1 IVNS1ABP GM21738 RIPOR2 GIMAP1 CD81 GIMAP3 ARID4A ZFP36L1 MRFAP1 SLC1A5 GM38394 GIMAP8 ARHGAP45 PTPA TAF1D GM10721 S1PR1 GPBP1L1 ATP6V0B ARHGEF18 HBB-BS HBB-BT CCNB1IP1 DIAPH1 LSM14A PRPF8 RSRP1 AKNA DDX6 COPA DDX5 DOCK8 ETS1 PPP1R9B ARHGAP15 UBE2D2A FCNA GM16286 EEF1B2 CNN2 SBF1 SUN2 CBX3 CMTM6 EPN1 PPP2R5A DNM2 CLK4 SAFB CLK1 NFKBIA IRF2 RASA3 PARVG MYH9 NDUFS2 MAN2B1 RBM25 NFKBIE LUC7L3 HP1BP3 KDM5C GPSM3 DDX3X YWHAB HBA-A1 SLC40A1 CHD4 HBA-A2 CHD3 CHD2 STK4 GRK2 EMG1 GRK6 MKNK2 ADGRE5 SARAF YWHAH HIST1H1C RBM39 ATF7IP CDK11B HIST1H2AP DDX17 H2AFY SOD1 FMNL1 DDIT4 LTB ACIN1 PFDN5 DDX23 ATP2A3 EHMT2 ATP5G3 CBL CYTH4 RBM5 RPS4X ARHGDIA RBM3 TRA2A PTK2B CHCHD2 RBM6 CYTH1
Up-regulated by MHV-A59 in murine spleen 5d from GSE146074 GBP7 GBP6 GBP9 GBP8 RPL21 RPL24 HSPE1 PSMB9 PSMC4 PSMC3 VIM UQCRC2 RPL26 HNRNPF UQCRC1 RPL28 IGTP RPL27 RPL29 RAN RPL11 MT-CO1 RPL10 MT-CO2 RPL13 RPL12 ATP5A1 MT-ND4 MT-ND1 MT-ND2 PSMD3 PSMD4 RPL15 AP2S1 RPL14 PSMD2 S100A10 GBP3 RALY GBP2 RPL18 GBP5 S100A11 GBP4 H2-D1 NAPSA RPL41 SERPING1 LGMN PSME2 HYOU1 MT-CO3 PSME1 FERMT3 CFB RPL6 GABARAP RPL31 RPL30 RPL32 RPL34 ATP5C1 ENO1 GVIN1 CFP RPL8 C3 RNF213 PLAC8 PRDX5 PRDX1 HMOX1 RPL37 RPL36 RPL39 SDF2L1 NUDC BTF3 ANXA2 TPI1 H3F3A ANXA5 TCP1 TIMM23 CS ARF1 RPN1 RPN2 ARPC1B HIST2H2AC RPS27L HIST2H2AA2 MS4A4C HIST2H2AA1 LDHA SH3BGRL3 HIST2H3C2 RPS15A STAT1 MDH2 STAT2 PGAM1 BGN TUBB4B COX6B1 PSMA6 MS4A6C PSMA7 DDB1 COL4A1 PSMA4 PSMA5 MYBBP1A MRPL52 PSMA1 PLIN2 TKT MSRB1 GRN RPLP0 HEXA GSTP1 PSMB7 PSMB8 PSMB5 TUBA1C PSMB6 TUBA1B PSMB3 PSMB4 PSMB2 ELOB TSPO TMEM14C GSR POU2AF1 TAP1 HNRNPAB RPSA PPP1CA CXCL10 FCGR4 FCGR3 CXCL13 LY6A TRAFD1 LY6E LY6D PF4 SQSTM1 PTPN6 FKBP4 SNRPB S100A9 NHP2 S100A8 ODC1 H2-K1 HP GM4070 CLU HSP90B1 TUBB5 LAMP1 CFL1 RBBP7 HMGN2 KPNA2 GM10053 M6PR PGD DDOST ARPC3 ARPC2 LCN2 H2-AB1 CSF1R UQCRB CORO1A CORO1B SERPINA3F SERPINA3G TXNDC5 IGFBP7 AP2M1 GPX3 EIF5A HSP90AA1 PA2G4 EDF1 AHSA1 NPC2 LCP1 RPL37A MCM5 MCM2 IFI27L2A NDUFB9 SLC25A3 NDUFB7 SHMT2 RETNLG LYZ2 ATP5L ATP5K PTBP1 ATP5B PSAP CAPZB COX4I1 PGK1 GZMB NDUFA4 GZMA RPL35A NDUFA2 RPL23A PKM EIF3L IMPDH2 NGP P4HB EIF3I EIF3G UBA52 EIF3D SLC25A5 EIF3B GAPDH EIF3C ITGB2 TRIM30A EIF4A1 WDR1 HSP90AB1 H2-Q7 U2AF1 COCH GANAB SUMO2 SEC11C RPL7A IDH3B ACTN4 HIST1H4M HIST1H4N PPA1 PPP2R1A PML CCT6A HIST1H4A HIST1H4B HIST1H4C LAP3 ALDOA_1 KARS SLPI HIST1H4H HIST1H4J HIST1H4K HIST1H4D TLN1 PFN1 HIST1H4F CALM1 IFITM2 IFITM3 FGL2 IL2RG LY6C1 PSMB10 LY6C2 ACTB C4B RPL36AL BSG B2M WFDC17 COX8A XBP1 TMED9 TALDO1 MIF IRGM2 IRGM1 IFI47 PARP14 RPS27 RPS26 RPS29 RPS28 RPL27A TAGLN2 RPS21 RPS20 ITM2B RPS25 SPARC ARL6IP1 IFI35 PCBP1 ICAM1 IFIT3 CD79A HIST1H3A LGALS3 RPS18 GM49342 RPS17 HIST1H3B LGALS1 PCBP2 FTH1 HIST1H3G TREX1 HIST1H3H HIST1H3I RPS10 RPS12 LGALS9 HIST1H3C RPS11 HIST1H3D OASL2 HIST1H3E RPS13 HIST1H3F CTSB SEC13 PTGES3 AKR1A1 NME2 BST2 PTMA THEMIS2 CRELD2 CALR MZB1 RAB5C TMED10 DAZAP2 TOP2A CTSZ OAS1A CTSS STIP1 HINT1 RAP1B C1QBP SEC61B PHGDH FCER1G GM49369 CTSD CLIC1 CAMP CTSC CCT4 TGTP1 CCT3 CD53 CAP1 ATP6V1G1 CD52 TGTP2 RANBP1 HCK MT-ATP8 HIST2H3B MT-CYTB CD48 CHIL3 C1QC C1QB SELPLG AHCY C1QA COX5A CSTB CD5L AKR1B3 CRIP1 COX5B GNAI2 CST3 MT-ATP6 RPL18A RAC2 CCT8 CCT7 CCT5 ZBP1 IFI204 MPEG1 SDHD TYROBP VCAM1 SDHB GM11808 PPIA UBE2S TGFBI CAPZA1 CHMP4B PPIB PCNA PLVAP SLFN4 IFI211 ATP1A1 CNDP2 FBL COX6A1 HIST1H2AF COTL1 HIST1H2AE HIST1H2AH HIST1H2AG HIST1H2AB HIST1H2AD PDIA4 PDIA3 IIGP1 ATP6V0C HIST2H2BB CYBB CYBA ISG15 SDCBP PDIA6 PRPF8 SEM1 OSTC GNB2 CHMP2A UBA1 MFGE8 TXN1 FCMR COPA VCP COPB2 LGALS3BP ACTG1 TGM2 UBC UBB HSPA9 SRGN HSPA5 HSPA8 HMGA1 ATP5F1 IRF1 OAS3 IRF7 COPE YWHAE LMNB1 HMGB2 PLD4 HK3 SYNGR2 RPL10-PS3 HIST1H1E HIST1H1A HIST1H1B HIST1H1C GM2000 D8ERTD738E HIST1H2AN RRM2 HIST1H2AP H2AFZ H2AFX HIST1H2AK SSRP1 SOD1 HIST1H2BG HIST1H2BF VDAC2 HIST1H2BH HIST1H2BC HIST1H2BB HIST1H2BN H2-T23 H2-T22 HIST1H2BK HIST1H2BJ HIST1H2BM HIST1H2BL YBX1 HSPD1 ATP5G3 USP18 GPI1 SEC61A1 ARHGDIB IGLC2 CHCHD2
Down-regulated by MHV-A59 in murine spleen 5d from GSE146074 DEK LNPEP H2-AA COL1A2 HNRNPM CD2 COL1A1 HNRNPK HNRNPL MARCKS DDX39B HNRNPC RPL22L1 CYFIP2 SF3B3 MT-ND6 AHNAK HNRNPU ARPC5L EWSR1 MT-ND3 ADCY7 DCAF7 FAM120A NXF1 FAM168B MTA2 PABPN1 STAT6 RPL17 SF3B1 SF3B2 JUND PRPF38B PRKCD EDEM1 NCKAP1L PRKCB BAZ1B PRRC2A EIF1 PRRC2C PTP4A2 RPS27RT EIF5 FAM111A BIN2 PRKAR1A PSME3 PRR13 CHST3 ATF4 RPL5 CDC42SE2 CDC42SE1 TRIR RPL3 RPL4 RPL35 RRP1 BAZ2A SMC4 RPL9 RPL7 ELK4 PPP4C SPIB PLCG2 TRP53INP1 LYN SSR3 ATPIF1 H3F3B IL10RA ANXA6 PAX5 APBB1IP COL3A1 ITPKB RAPGEF1 CRLF3 ARF5 WDR26 BTG2 GRAMD1A BTG1 ZC3HAV1 CLTA IQGAP1 RASAL3 OAZ1 SIGLECG CSRP1 CCL21A RPS27A MBNL1 BRD2 IFNGR1 LAPTM5 ETNK1 PKN1 HCLS1 PTPRCAP ARF6 SMG1 TCF25 TUT4 VSIR TMSB4X FGFR1OP2 SETD2 JAK1 PTPN1 MAP3K1 USP7 RPS9 TPM4 TPM3 RPS6 TAP2 HIPK1 PNRC1 PNRC2 MORF4L1 MAPKAPK2 KAT6A SRSF3 FKBP8 PDCD4 SRSF5 S100A4 NCF1 SRSF6 SRSF7 TRIM34A TARDBP UTRN PPP1R15B ROCK1 DGKD SRRT SLA SRSF1 DGKA ZFP207 SRSF2 UCP2 AUP1 ACAP1 BZW1 PPP1CC ABLIM1 NSD1 H2-DMB2 H2-DMB1 SLC39A7 SH3BP5 RPS5 RPS3 SPOP SWAP70 PNISR BNIP3L CYB561A3 ARPC5 EEF2 MAFB NFKB1 MOB1A MAN1A ARPC4 NCL FCER2A TRIM12A EIF4G2 BLK NOTCH2 MAZ H2-M3 KMT2D AK2 FAM107B TMEM131L HVCN1 SAT1 ARHGAP4 UQCRH STK10 SNN TPR EIF2S3X EIF4EBP2 ANKRD11 PAPOLA BTLA TMSB10 ACTR3 ACTR2 ITGA4 GPX4 RPL13A OGA SON CD24A DNAJC7 OGT TMBIM6 SERINC3 LAT EIF4B LRRK2 UBR4 BRK1 LBH SPN PPP6R1 ATP5E EIF4H B4GALNT1 H2-OB CIITA MCL1 EIF3A CR2 SORL1 PTBP3 CDC42 KLF2 KPNB1 LCK MYO1C RPS3A1 TXNIP EIF3H ANAPC5 EIF3F EVL CLEC2D NOP53 SMAP2 EIF3E MYO1G NOP56 TPT1 RNF10 ITGB1 EIF4A2 ALAS2 UNC93B1 LSP1 H2-Q5 H2-Q6 PIK3CD LENG8 U2AF2 ARRB2 LRMP H2-Q4 TSPAN13 ITGAL FYB HECTD1 POLR2A SUMO1 TRIM28 CSK ITGB7 HNRNPA3 HNRNPA0 HNRNPA1 SSB SP110 PLEKHA2 CNBP ACTN1 1-SEP SRRM2 XRN2 CALM3 SP100 CCNI MYCBP2 AKAP8 MNDAL CCNL2 H2-EB1 TENT5C COX7A2L VASP FCHSD2 CCDC88C BC005537 BANK1 WNK1 PIK3R1 GRAP GRB2 EZR ITM2C RPS24 JPT1 MACF1 VARS ANP32B RTCB NUMA1 IKZF1 IKZF3 INPP5D CD79B RPS19 SNRNP70 DHX15 CD19 RCC2 KIF21B GLUL ZFP740 RPS14 RHOA APOBEC3 TSC22D3 VAV1 PTPRC KLHL6 TAX1BP1 PABPC1 CD22 TRAM1 CLIC4 DHX9 SLC44A2 ARHGEF1 SDC3 SDC4 CSDE1 LIMD2 LIMD1 SNX5 RAP1A MLEC CTSH GM10800 CD37 GM10801 SPTBN1 MAP4K2 RANBP2 MAP4K1 DBNL SYK PARP1 ERBIN ZDHHC18 HNRNPUL1 HNRNPA2B1 ESYT1 HNRNPH1 HNRNPUL2 STK17B HDGF CD47 SIPA1 DYNC1H1 TRAF3IP3 GDI2 TNFRSF13C RAB7 GDI1 CTNNB1 NUCKS1 MKI67 AKAP13 SERP1 FTL1 CXCR4 SCD1 SPTAN1 CD55 TBC1D10C CD74 IFI203 SHISA5 ATP1B3 HUWE1 LAX1 SELENOP EEF1A1 DOK3 ARHGAP30 AXL SELENOT FAU SELENOW WDFY4 IVNS1ABP GM21738 RIPOR2 SLFN2 GIMAP1 CD81 GIMAP3 ZFP36L1 MRFAP1 GIMAP4 RRBP1 GIMAP6 SAMD9L GIMAP8 ZFP36L2 TMEM123 ARHGAP45 PTPA DOCK10 CCND2 S1PR1 GPBP1L1 SASH3 ATP6V0B NONO ARHGEF18 DSTN HBB-BS HBB-BT DIAPH1 LSM14A GNB1 SELL RSRP1 AKNA DDX6 DDX5 DOCK8 ETS1 PPP1R9B GM16286 EEF1B2 SBF1 SUN2 CBX3 CMTM6 MSN ARAP1 NAP1L1 EPN1 PPP2R5A CLK1 NFKBIA SFPQ RASA3 PARVG EEF1G MYH9 NDUFS2 MAN2B1 DOCK2 NFKBIE MS4A1 LUC7L2 YWHAG GPSM3 DDX3X YWHAB UBA7 HBA-A1 SLC40A1 CHD4 HBA-A2 CHD3 CHD2 STK4 GRK2 EMG1 PSME2B GRK6 MKNK2 ADGRE5 SARAF BLNK 9930111J21RIK2 RBM39 DDX17 H2AFY YWHAZ FMNL1 DDIT4 LTB ACIN1 H2-T24 ATP2A3 EHMT2 CBL CYTH4 RBM5 RPS4X RBM3 TRA2A MAT2A PTK2B CYTH1
Up-regulated by SARS-CoV-2 0.2 MOI in A549 transduced with ACE2 vector from GSE147507 MED1 B3GALNT2 TYW5 PRKXP1 NGDN ZNF281 MED9 KIAA1586 FRS2 NECAP1 CPEB2 MEX3C MARCKS RFX7 TEF SNORA28 ZC3H11A CPEB4 LINC00641 CHIC1 ATF3 PGAP1 CHIC2 AP5Z1 IER5L LOC284454 RNF6 TOB1 GPATCH8 GPBP1 TGS1 HOXA3 CEP95 HES1 PPARGC1A FBRS SAMD11 ZNF267 TSPYL4 JUND PRPF38A FZD5 KLF10 INO80 NR1D1 ZNF12 ELL2 HCFC2 COL2A1 HIF1A-AS2 SNORA48 CHST2 VAMP2 HBP1 PTP4A1 PRR14 CFB CFI CEP85L BCL10 WDR43 ZNF24 SMC4 MYSM1 RBPJ C3 ZC3H12A TBK1 GRPEL2 ZC3H12C ADNP2 IER2 JUNB IER5 ZBTB7B IER3 ZNF121 ZNF484 TRMT10C JUN EXOC8 CARD9 CCL20 TET3 TET2 BRAF CP FAM126B CD200R1 C6ORF62 DUSP8 CYLD BHLHE40 BHLHE41 PIGA REL MITD1 C5ORF51 ACHE ZNF596 SNORA63 WDR26 BTG2 BTG1 ZNF518B AEBP2 SLC7A2 MYNN BBC3 MED13 TIGD1 BRD4 YTHDF2 ANKRD49 YTHDF3 STAT1 FOS AEN NOC3L ZNF57 SCAF4 GPR142 FOSB SNX16 ZNF217 LAMTOR3 RLIM ZNF337 CACTIN SRFBP1 HSD17B7P2 ZNF211 SCARNA15 CDKN1B ZNF451 PTGS2 ING3 NAMPT SMCHD1 FGFR1OP2 ZNF567 SETD2 ZSWIM6 ZNF324 THAP9-AS1 RAB2B FBXW7 BRPF1 AOC3 ZBTB11 ZBTB10 PNRC1 TICAM1 NEAT1 PNRC2 CNOT6 ADM5 CLUHP3 DMTF1 CNOT4 ZNF317 SNRNP27 PHIP ZNF557 ZNF436 SRSF6 ZNF555 PPP1R15B ZNF430 CCNT2 CSF1 CCNT1 ODC1 SRSF1 PPP1R15A ZBTB21 TNF RCHY1 ZFP37 ZFP36 RBBP6 RAB24 MAP3K9 MAP3K8 LINC00115 HMGN2 IGFBP1 FST VEZF1 FRMD4B DYRK1A PPTC7 FOXN2 NFKB1 NFKB2 MAFF ARMCX5 MED26 ARMCX3 MDM4 ERF MALAT1 MAFK ZNF776 ZNF654 MDM2 INO80D DIDO1 EID2B C11ORF96 ZNF770 ANKRD12 RLF ZKSCAN8 ABL2 CEP350 PIM1 PIM3 ZNF764 DR1 APAF1 LOC644656 MSL2 WRAP53 SP3 ZNF639 BCL3 TRIM59 SNAP25 DLX2 NFAT5 PLEKHF2 CELF1 ZC3H4 UBR5 DUSP16 BRE-AS1 ZNF627 LBP ZNF503 SKIL MCL1 FNIP1 MBIP LINC00472 PLEKHG2 FEM1C LYSMD3 TP53INP1 ZBTB34 KLF5 ASPM PPM1D CTDSP2 ESF1 ZNF614 BDP1 CEBPB RNF11 CCDC71L C1R NXT2 CEBPD ZBTB48 C1S ZBTB43 HDAC9 SIN3A TLK2 ZNF845 CCL2 YAF2 ARL5B RMRP C3ORF38 SLC12A6 ARL14 YOD1 EREG MAPK8IP2 ASS1 NEURL3 IL23A LACC1 KIF20B ZNF711 BCORL1 HIST1H4E ZNF830 PNN UHMK1 CRKL STRIP2 PARD6B SLC12A7 CCNL1 NTNG2 EGR1 SNHG1 SIAH1 EGR2 ZRANB2 GADD45B GADD45A ARRDC3 EAF1 RASSF8 RASSF9 HLA-B TOPORS HLA-F ARC SNHG10 INTS6 SIM2 RBAK PPP1R18 SLC45A4 CREBRF JMJD1C DCUN1D3 ZBTB1 THUMPD1 ICAM5 THUMPD2 ZBTB6 ZBTB5 EDA2R IKZF5 ICAM1 EPM2AIP1 ZNF805 MIER3 MIER1 HIVEP2 EPC1 PDK4 HIVEP1 PPP1R10 RIMKLB ARGLU1 ZBED5 FOXD3 TSC22D2 RBM12B HIST3H2A RAP2B DEPDC7 ID1 ID3 CCNG1 SDE2 CSRNP1 USPL1 FOXC2 FOXC1 ZCCHC10 SDC4 EVPL TOR1AIP2 SOCS3 SOCS4 PRX PCF11 ERI2 NFIL3 SOCS5 SUZ12 PER3 PRPF39 PER1 B3GNT5 HNRNPH3 CDK5R1 FOXA2 RSF1 SERTAD2 RSRC2 SERTAD3 ICOSLG GDF15 ZFC3H1 ZNF77 ZNF79 TUG1 GRHL1 GPRIN3 ARHGAP30 RBM48 CD83 CRTC2 MIR3191 ARID4B KIAA2026 ATAD2B STRN3 RELB ZNF8 PURB RASD1 TAF1D EFNB1 SPTSSA GPBP1L1 HIST1H2AC TGIF2 UTP15 TTC32 SLC30A1 SELE HIST2H2BF HIST2H2BE GEM NR4A3 EFNA1 ZNF92 MXD1 H1F0 TAB3 USP42 ACBD3 ZCCHC3 NR4A1 VCPIP1 TGM2 UAP1L1 SNIP1 PMAIP1 ARID2 POU2F1 TIPARP POU2F2 IRF2BP2 NFKBIZ ETV3 YY1AP1 NBEAP1 GPCPD1 TCTE3 CLK4 NFKBIB CLK1 IRF1 NFKBIA IRF9 PAXBP1 NFKBIE NFKBID USP36 USP37 NNMT MAST4 TNFAIP8 ZNF195 CHD9 TNFAIP3 PLD6 CXCL2 CXCL1 CXCL3 CHD2 CHD1 IRF2BPL CXCL5 DBP CA2 H2AFJ PDE4B FBXL19-AS1 H1FX FGA KDM6A KDM6B RBM39 FGB WTAP FGG TAF13 HIST1H2AI ZNF184 PDE4D HIST1H2AK THAP1 THAP2 IRGQ UFM1 DDIT4 LTB SPRY4 DDIT3 SPRY1 MIR5047 USP15 ZNF292 KANSL1 ACAN FLCN EVA1C SIX4 SMNDC1
Down-regulated by SARS-CoV-2 0.2 MOI in A549 transduced with ACE2 vector from GSE147507 SND1 UNC13D DKK3 MYL6 SCD VIM GPD1L UQCRC1 CDA PLCD3 SF3B5 AHNAK SERPINE1 ADCY5 GHITM ADCY9 ASNA1 DPYSL5 MICALL1 PSMD4 CAPNS1 ANO10 PSMD2 S100A16 S100A10 RPL18 FDFT1 S100A11 NEBL ATP6AP1 EDEM2 PRKCA EHD1 SLC6A6 EHD2 HSPG2 EIF6 TCN2 PRKAR1B FASN PRR13 OGDH TDRKH ITSN1 ENO1 GNS PRKDC LIPC LRPAP1 MYLK LIPA ABR ADH5 PRDX3 EPB41L1 ALCAM EPB41L2 PRDX1 LIPH MYO18A SFN SERPINH1 PRKACA NUDC CTC1 ANXA1 ANXA2 ANXA3 TPI1 JUP FUCA2 MYOF ANXA6 CGN WNT9A EMP3 TMEM43 MRPL27 MRPL24 TUBB2A GPRC5A GIPC1 ADI1 ERGIC1 GRAMD1B FLII ABHD4 RPN2 ABHD2 PEA15 NOC4L OAZ1 GLG1 ACAT2 FAM171A1 LDHB ERMP1 CSRP1 TK1 SH3BGRL3 RSU1 TIMP2 AP1M2 GPR39 MDH2 GSTO1 PET100 LDOC1 TUBB4B TUBB4A TMEM59 COL4A1 GATM COL4A2 MAP1B PLP2 COL4A6 MYRF PIGS NDUFA13 PYGB GSTP1 PRSS23 TUBA1A PSMB7 LMAN2 UBL5 PSMB5 NDST1 NSDHL PSMB6 TUBA1B PSMB3 PSMB1 UCN2 PSMB2 LOC100129034 ANXA9 ANKRD52 TSPO MDH1 AGR2 TMEM14B JAK1 FADS2 GSN SLC16A2 S100A3 GSR USP5 RPS9 GPT2 PPP1CA TUBA4A NSFL1C PINK1 COPS6 C1ORF116 PLOD1 TRAFD1 UQCRQ ZYX S100A6 ADAM9 DHCR7 ALDH1L2 TNC CLU CDH4 RUVBL2 KIAA0754 TPM1 FLNA CFL1 FLNB ACSS1 MPDU1 CPA4 TRAPPC1 IGFBP6 ATP8B1 PHKB SLC9A3R1 ACLY GGCX TBXAS1 DRAP1 FSCN1 PEF1 CDC42EP1 NOP10 RNF167 NRSN2 RAB3B PFKFB4 INSIG1 PHB SLC38A10 ARHGAP1 OLFML2A CORO1C TM7SF2 PCDHAC1 SLCO2B1 ABHD12 GLIPR1 APMAP ANKRD10 PLXNA2 IGFBP7 PLS3 AP2M1 GPX3 COA3 EIF5A HMGCS1 ITGA3 AMBP TXNRD1 GFPT2 ELAC2 DHCR24 TPCN1 G6PC3 PCCB NPC2 CPE DSG2 NES ACO2 ITGA6 TMBIM6 CPM MIPEP MCFD2 NDUFB8 FAM114A1 NDUFB2 RAP1GAP LBH PSAP CAPZB PGK1 BCAS1 TRIM45 NDUFA9 IDH3G CYP51A1 MBOAT7 NDUFA4 NDUFA2 TPD52L2 SORL1 CPPED1 PKM TSPAN15 MYO1C DAD1 EIF3K OCIAD2 PFKP BECN1 WDR4 DNHD1 ECE1 ETFA ETFB GANAB STK32B CACNG4 PTPRN2 ATP6V1E1 ACTN4 KRT4 ENTPD6 ECH1 ACTN1 TM4SF4 KRT7 PPP2R1A MRPS18A PSG4 SMARCA2 FRAS1 PSG5 TRIM16 TLN1 PFN1 APP TAGLN LRP1 HM13 UQCR10 MST1R ACTB BSG SNRPD2 NIPAL3 DAG1 EXOSC1 TMED9 ALG8 HSPA12A ANK1 VAT1 RPS26 NCEH1 SPATS2L TAGLN2 CYSTM1 EZR OXTR ECI2 MGST3 LMAN2L LGALS1 RPS19 MICAL2 NFU1 WARS KLHL4 NME1 RHOC PTPRF CEACAM1 KRT19 P4HA2 CEACAM6 KRT15 TECR ANXA2P2 AKR1B10 CALR ALDOA AARS COL18A1 NEDD8 KRT20 ACTR1A ACACA MAGT1 MAP4 PITRM1 ANKRD1 CTSD CAP2 CAP1 PARP4 SVIL ATP6V0E1 BCAP31 SORT1 PRMT2 AP2B1 RPA1 ANO6 LIMA1 FKBP1A CTTN MAPRE2 DYNC1H1 CD44 NRP2 AHCY MAMLD1 CD63 GFM2 PAPLN AKR1B1 AP2A2 FCGBP NUBP2 CST2 CST1 CTNNA1 CD59 SPTAN1 KLHDC3 SCARA3 G6PD APLP2 SDHA ALDH4A1 EEF1A1 COL5A2 AXL AMOTL1 SPNS2 CD68 RPL26L1 CD82 CD81 GALNT18 SLC1A4 PEBP1 ATP1A1 ATP2C1 CNDP2 LOXL2 NDRG1 COX6A1 EFTUD2 LMNA NT5E DOCK10 PPME1 CCND1 GPC1 EMC3 COTL1 BANF1 CAPN1 CAPN2 FDPS SREBF1 SREBF2 EPHX1 CYBA DARS2 PDIA6 COL6A1 PROCR TRNP1 DDAH1 MATN2 GNAS UBA1 CDH17 MFGE8 MICU1 FBN1 BLVRB VIL1 VCL PXN CCDC127 SLC41A3 SH3KBP1 SRP14 LTBP1 RASGRP3 CNN2 EBP UBB FAM162A TMEM109 ACAA2 IL6R SUN2 GALNT5 LAMB3 MSN CAV1 LAMB2 HMGA1 LAMB1 DNM1 TGFBR2 VCAN LPIN1 ACOX3 BMP1 NDUFS8 MYH9 RTN3 RTN4 ILK LAMC1 LAMC2 NID2 DPP3 DPP4 PLD3 SYNGR2 LASP1 UPK1B PDLIM7 ZNF185 GLP2R ANXA11 LSS SLIRP MVD OTUB2 NXN KRT81 KRT80 DDC ACADVL PRKCSH LAMA3 YBX1 THBS1 MSMO1 KRT86 CYTH3 ADD1 RPS4X ALDH1B1 NRCAM
Up-regulated by SARS-CoV-2 2 MOI in A549 transduced with ACE2 vector from GSE147507 MED1 B3GALNT2 MX1 PRKXP1 ZNF281 ZNF160 MED9 FRS2 NECAP1 MEX3C ZC3H11A RPL22L1 CPEB4 LINC00641 ATF3 CHIC2 SAMD9 LOC284454 RNF6 GPATCH8 APOL6 GTPBP1 PPP4R2 SCAF8 GPBP1 PPP4R4 ZSCAN12 NRBF2 SPOCK2 HES1 ALOXE3 ZNF267 KLF11 BATF2 PHC3 ZNF143 PRPF38B DNAH17 KLF10 DNTTIP2 NR1D1 C12ORF50 VPS37B ZNF12 ZNF14 HCFC2 COL2A1 ABTB2 FOSL1 SETX PLSCR1 VAMP2 HBP1 EZH1 ATF4 FERMT3 PRR14 ITSN2 BCL10 IL20RB NEDD4L ZNF24 MYSM1 RBPJ ZC3H12A TBK1 ZC3H12C NKX3-1 ADNP2 IER2 JUNB IER5 IER3 C5ORF56 PNPT1 ZNF484 JUN DUSP1 CCL20 SPHK1 TET3 TET2 ZNF34 CD200R1 DUSP8 CYLD ZEB2 BHLHE40 BHLHE41 PIGA REL MITD1 C5ORF51 BTG2 YTHDC1 BTG1 ELL AEBP2 MYNN BBC3 MED13 CASP10 ZNF107 ANKRD49 ZNF462 STAT2 UTP3 FOS AEN ZNF674-AS1 NOC3L ZNF57 MRPL44 SCAF4 FOSB LAMTOR3 RLIM ZNF337 GZF1 SRFBP1 SETD5 ZNF211 CDKN1B OGFR GUCA1B PTGS2 IFIH1 SMCHD1 RICTOR ZNF567 THAP9-AS1 SEMA4B FBXW7 PHLDA1 ZBTB17 ZBTB10 PNRC1 RAB30 TICAM1 NEAT1 HIC2 CLEC4E ADM5 SLC9A8 CLUHP3 DMTF1 CNOT4 KAT6A ZNF317 RNF185 ZNF436 PPIL4 ZNF555 FAM8A1 PPP1R15B CCNT2 CCNT1 ODC1 PPP1R15A GTF2B ZBTB21 TANK HOTAIRM1 GOLGA7B ZFP36 RBBP6 RNF19B NPTX1 C11ORF68 MAP3K8 LINC00115 MB21D2 PNISR BTN2A1 TRAF1 VEZF1 PPTC7 FOXN2 NFKB1 NFKB2 MAFF MED26 ARMCX3 MAFG MDM4 MALAT1 ZNF778 BIRC2 ZNF654 BIRC3 INO80D DIDO1 ANKRD33B CD274 ANKRD12 RLF SALL1 ABL2 CEP350 TNFRSF9 PIM1 PIM3 ZNF764 MOAP1 ZNF641 LOC644656 MSL1 MSL2 WRAP53 ARL4D SON NRG4 ZNF639 BCL3 NFE2L2 NSRP1 NFAT5 PLEKHF2 CELF1 ZC3H4 CBWD2 NLRC5 DUSP16 BRE-AS1 PTBP2 DUSP10 ZNRD1 ZNF627 DRD1 SKIL IP6K2 MCL1 FNIP1 LINC00472 REC8 PATL1 PLEKHG2 FOXJ3 KLF4 ASXL1 KLF7 PPM1D KLF6 CTDSP2 ESF1 TRIM38 CEBPB ZBTB43 DDX60L PPM1K SLC25A28 REPIN1 PSD3 P2RX5-TAX1BP3 TRIM25 TLK2 CCL2 TRIM21 ZNF721 C3ORF35 ARL5B C3ORF38 SP110 IFRD1 SFMBT2 ARL14 YOD1 EREG SMARCA4 PML XRN1 IFI27 EIF1B DCP1A HIST1H4E ZNF830 SP100 IFITM1 TRANK1 CDKN2AIP PNN CRKL HERC5 ELMSAN1 IFI16 NIPAL4 SLC12A7 CCNL1 EGR1 SNHG1 APOBEC3F GADD45A ARRDC3 EAF1 RASSF8 HLA-B IFI44 PARP14 HLA-F PARP12 ARC SNHG15 PARP10 SNHG12 SNHG10 INTS6 ANKRD18A RBAK CSTF3 CREBRF ZBTB2 JMJD1C IFIT5 ICAM5 THUMPD2 IFIT2 IFIT1 IKZF5 ICAM1 IFIT3 EPM2AIP1 HELZ2 ZNF805 MIER1 HIVEP2 EPC1 HIVEP1 SOX9 PPP1R10 IL11 ZRSR2 LIF NBPF10 IL1A LOC648987 RAP2B THEMIS2 STK40 CSRNP1 USPL1 FOXC2 SUZ12P1 SDC4 SOCS3 SOCS1 PRX PCF11 NFIL3 UBXN7 PDRG1 PARP9 PER3 PER2 PER1 B3GNT5 CMPK2 HNRNPH3 DIRAS1 RSF1 SERTAD2 RSRC2 SERTAD3 IFNB1 HDX FILIP1L TBC1D22B CD55 GDF15 ZFC3H1 ZNF77 ARID3B TSC1 UBE2B ZNF79 GRHL1 ZNFX1 OTUD1 OTUD3 RBM48 CD83 CRTC2 PRDM4 SFSWAP PRDM1 ZFP36L1 CWC25 ARID4B IFI6 DNAJC27 SAMD9L RELB ZNF7 PURB TAF1D HSF2 TBC1D15 GPBP1L1 MSX2 MORC3 PPP4R1L UTP15 DDX58 USP43 INHBA TDRD7 ISG15 SELE HIST2H2BF HIST2H2BE GEM ISG20 EFNA1 EFNA3 MXD1 CLASRP USP42 TAB2 ZCCHC3 CREB5 ZCCHC2 ETS2 NR4A1 DDX60 TGM2 POGZ COL4A3BP CHMP1B SNIP1 PIBF1 POU2F1 TIPARP RBM15 VDR POU2F2 SMURF1 NFKBIZ NAV2 ETV3 NAV3 OAS1 YY1AP1 GPCPD1 CLK4 NFKBIB CLK1 IRF1 NFKBIA IL6 OAS3 IRF2 IRF7 NFKBIE NFKBID KDM5B USP36 USP37 MCTP1 TNFAIP8 BCL2A1 TNFAIP3 PLD6 CXCL2 CXCL1 CXCL3 CHD2 DBP CASP8 IRAK2 NRIP1 PDE4B BDKRB2 KDM6A KDM6B RBM39 TCF7L2 WTAP HIST1H2AK ZIC5 THAP1 THAP3 WEE1 C19ORF66 LTB CRY1 DDIT3 CCDC174 MIR5047 USP15 ZNF292 RB1CC1 KANSL1 USP18 RND1 OASL FLCN SENP7 SIX4 DIP2C RBM33 CYTH1
Down-regulated by SARS-CoV-2 2 MOI in A549 transduced with ACE2 vector from GSE147507 SND1 NUP210 EML1 SCD LAS1L PSMC5 SERBP1 MTHFD1 GPD1L C19ORF48 TARS2 GHITM TPGS2 ASAH1 ASNA1 DPYSL5 C19ORF53 CAPNS1 FLRT2 STOM S100A10 RPL18 FDFT1 SAMD5 SIGMAR1 ATP6AP2 ATP6AP1 CYP4F3 ERLIN2 HSPG2 EIF6 QARS FASN PPT1 PLBD2 HYOU1 PRR13 FARSA RNH1 TTYH3 ENO1 TMEM97 LRPAP1 ANAPC11 MYLK MRPL12 PRDX4 C12ORF57 PRDX3 C5 PRDX5 ALCAM SCP2 FASTK PRDX1 PDGFD SERPINH1 ANXA1 ANXA2 TPI1 PDHA1 JUP SSR4 ANXA6 TMEM43 MRPL24 SUMF1 WDR34 MRPL23 GIPC1 ADI1 HEATR5A EXOC4 TMEM106B RPN2 IQGAP2 OAZ1 GLG1 ATIC LDHB ERMP1 TK1 PNPO RSU1 AP1M2 WDR18 MDH2 PET100 ADAM12 CNPY2 SLC39A11 ADAM10 SULF2 F5 COX6B1 DHRS4 TUBB4A TMEM59 PSMA7 HADHB GATM FABP5 EBNA1BP2 ADAM15 COL4A2 LAMTOR2 TKT MSRB1 OAT FH NDUFA13 NDUFA10 NDUFA11 GSTP1 NOC2L TMEM141 PRSS23 TUBA1A PIGX LMAN2 UBL5 PSMB5 NSDHL PSMB6 TUBA1B PSMB3 TCTN3 TCTN1 CKB NEFL AGA MDH1 AGR2 TMEM14A P4HTM TMEM14B TMEM14C FADS2 GSR USP5 RPS9 TFPI2 GOLM1 SEMA4G HNRNPAB DCDC2 COPS6 PLOD1 PSAT1 UQCRQ FKBP8 PDCD4 ADAM9 CDKN2AIPNL DSC3 NHP2 GPS1 UCP2 CLU PAPSS2 RUVBL1 LAPTM4B LAMP1 FLNA SPP1 SLC16A3 CDC123 PSKH1 MPDU1 SIAE CPA4 IGFBP6 GOT1 FAM217B PHKB CYP4F11 PGD SLC9A3R1 LSM4 DDOST GGCT SCCPDH TFDP1 REEP5 PITPNM1 FSCN1 PGP PCYOX1 RNASEH2A FTL PHPT1 BCAT1 PIN1 NOTCH3 EIF4EBP1 PHB OLFML2A CORO1B HSPBP1 TM7SF2 TM7SF3 UQCRH MMP24 SLCO2B1 ABHD12 APMAP IGFBP7 PLS3 AP2M1 GPX1 CYB5B COA3 UNC45A GPX2 AMBP LANCL2 TXNRD1 DHCR24 TPCN1 G6PC3 PCCB MCM5 DSG2 SERPINI1 DCTPP1 ACO2 SERINC3 SERINC5 MCFD2 FECH SLC48A1 NDUFB8 GTF3C6 SHMT1 NDUFB2 RAP1GAP ZMPSTE24 TNPO1 PSAP SPR CAPZB PGK1 MMAB NDUFA4 NDUFA2 VPS33A TPD52L1 PFKL TST ASPH EIF3K ANAPC5 SLC25A11 PCOLCE2 SLC25A10 STUB1 SMPDL3B BECN1 SMARCD2 SLC47A1 SEC23A SEMA3E PRPS1 UHRF1 ETFB ATRAID PBXIP1 SGCD GANAB SGCB POLR2E POLR2G POLR2J INSL4 POLR2L ACTN4 KRT4 TRAP1 ECH1 SLC12A2 TM4SF4 SFRP4 GSTZ1 PDCL3 PREB PFN1 CALM1 CMAS CISD3 ANTXR1 EXOSC5 BSG SNRPD2 NIPAL3 DAG1 COX8A TMED9 TNFSF15 ALG8 TALDO1 ALG3 COMMD4 ACADSB COX7A2L RPS26 ALDH7A1 NDUFAF3 SDC1 ITM2C ANP32A MAGED2 TXN MGST3 LMAN2L RPS15 PTDSS1 LGALS1 TSPAN7 TSPAN6 APOH TSPAN3 TSPAN4 PTGES2 AKR1A1 KLHL4 NME1 TPPP3 PRPF19 KITLG RPUSD3 ANXA2P2 PABPC4 CALU AKR1B10 CALR CD24 AARS COL18A1 TMED10 MRPS16 CETN2 MRPS12 SWI5 MRPS11 GPAA1 CD99L2 SLC7A11 PCSK6 PPP3CA NNT UCHL1 SH3BGRL HLTF MLEC TMED2 PHGDH CTSD NQO1 CAP2 TM4SF18 MRPS27 ATP6V0E1 ATP6V0E2 BCAP31 SORT1 RANBP1 CREG1 QPCT AKR1C3 RPA1 THOC3 PGRMC1 APRT FKBP1A TTC8 NDUFAB1 CANX F2RL2 MAPRE2 LLGL2 CD44 AHCY GBA MRPS34 AKR1B1 CRIP1 PEPD CRIP2 SAMM50 THSD7A CCT7 GIT1 KLHDC3 PHYH G6PD EPDR1 APLP2 ALDH4A1 EEF1A1 TP53I3 POLE4 ABCG2 CNTN1 MPI NDUFB10 HSD17B4 PEBP1 ATP1A1 TOMM20 COX6A1 EFTUD2 PPME1 EMC1 CAPN5 GPC1 EMC4 BANF1 CAPN1 NDUFV1 FDPS PDIA4 TRAPPC2L IDH1 EPHX1 OST4 MPST TBCD CYBA INHBB TBCB TMEM230 DARS2 PDIA6 OXA1L ALDH3A2 GCLC TRNP1 ALDH3A1 SRPRB MATN2 CDH17 MFGE8 MXD4 VCP DPY30 CPLX2 CNN3 EBP ALDH3B1 COX15 SVEP1 COX14 ACAA2 HADH GALNT1 PYCR1 PARVA DNM2 TGFBR2 GRHPR VCAN NDUFS8 NDUFS7 NDUFS6 MANSC1 DNASE2 RTN3 CKS1B SLC40A1 HS2ST1 PLD3 SYNGR2 YWHAQ FAHD1 CHID1 MBTPS2 RRM2 ANXA11 SOD1 GLB1 TRAPPC6A CAT ALDH1A1 SLIRP VDAC3 GALM ZP3 AURKAIP1 PRKCSH YBX1 EMC10 PKD2 CRYZ RPS4X NT5DC2 IGFBPL1 ALDH1B1 POLD2 BPNT1 NRCAM
Up-regulated by SARS-CoV-2 in ferret nasal wash from GSE147507 GBP6 SND1 CHGA MX1 NGDN HPCAL1 WDR77 CD2 FAM133B GALNS CD5 DDX39A XPNPEP1 C19ORF44 TMEM79 TEP1 AHNAK AP5Z1 SERPINE1 CLEC10A IER5L AVIL KRTCAP2 NUP85 ABI3BP PSMD1 AP2S1 NUP88 VPS18 BATF2 BATF3 PHC2 DNAH17 LOC101686332 BACE2 FOSL1 SERPING1 LGMN PPT1 PLBD2 HYOU1 CHST2 SIVA1 VAMP5 EZH2 TTYH3 TRIO CTBP1 ITSN1 PLA2G5 GATA3 ENO3 SMC5 LRPAP1 HSPH1 IL4I1 EPB41L2 EPB41L3 SDF2L1 SNORA73 CHKA CARD9 ANXA5 SPHK1 EMP3 GNL1 NFATC1 SIRT4 INF2 MMP14 SIGLEC1 CRLF2 ACHE IL18BP RPN1 C1ORF35 AEBP1 MED16 TIFAB TRMT112 TIMP1 WDR18 CLUH NR1H3 MAP1S GPR31 SLC39A14 MAP1A MYBBP1A ANGPTL6 TSR1 PTPRCAP TKT RPLP2 QPRT AOAH NOC2L FSTL3 MRPL55 7SK FCGRT GPNMB JAK3 CD163 LAG3 BTBD6 OLFM1 CXCL10 LRCH1 UQCRQ ANKRD22 PTPN7 FKBP4 NHP2 MAD2L2 TELOMERASE-VERT IDUA C11ORF71 PLXND1 GLT8D2 PLOD3 METRNL NPAS1 TUBB6 FLNB GRAP2 PMPCA SLC25A48 ATP8B2 GLMP LY86 TVP23A MAFB ADAP2 METTL23 PITPNM2 MED20 GGCX RNASE_MRP ST6GALNAC4 TOX RAD9A BRSK1 PARM1 C1ORF56 HSPBP1 TXNDC5 PLXNA1 EIF2B1 EIF5B RFC2 RAD23A MERTK REXO5 WRAP53 DNAJC1 ZNF516 CD247 KCNK7 SEH1L SH2D2A SHMT1 MSTO1 TREM2 MLLT6 MROH1 PLTP DRAM2 CCDC85B EMILIN2 FNIP2 TRIM46 LIMCH1 CPT1A GADD45GIP1 GZMB GZMA CABLES2 GZMH BCS1L FBXL15 MYO1E P2RX7 PFKL IL2RB ESF1 BPI NOP53 EIF3B NOP56 SRC TSSC4 HDAC1 ECE1 TULP2 TPRN CCL8 CCL5 WDR7 CCL2 FBXO6 CCDC50 ILKAP SLC12A4 CIZ1 PHYKPL MFSD12 SMARCA4 AFG3L2 SERHL2 RIN2 LRP1 LRP5 LRP3 MESD LOC101673948 PSMB10 DHX30 STRIP2 PDCD11 SLAMF9 APBB1 SLAMF8 LONP1 MSR1 INTS1 MIF VAT1 EXT1 PUM3 TTLL12 PTGES 5S_RRNA RGL1 CUTA PIEZO1 PRF1 PCDH19 CD79A LGALS1 ARSI ARL6IP4 TNFSF10 KCNN4 TNS3 TRPM5 TSC22D2 ATP5F1D NME1 MRPS6 SYN1 P4HA2 FAM20C TECR RDH5 CRELD2 U1 MPND U3 H2AW DOT1L ATP5ME TMPRSS9 CTSZ RTF1 CTSW SLC7A10 CD3E STIP1 SOCS1 SH3PXD2B PITRM1 C1QBP CCR7 SNX8 CCR5 MAP4K1 MRPS25 SORBS3 PACS2 APBA3 DNASE1L1 C1QC NRP1 NRP2 C1QB MRPS34 SLC66A1 DERL2 NUCKS1 PEPD REV3L CCT5 TUFM CD72 MPEG1 MATK ATAD3A BATF DPM3 UBXN11 SPNS1 WDFY4 HDGFL2 CD86 RIPOR3 CD81 RRNAD1 RRBP1 TBRG4 LMNA SH3TC1 HSF1 PES1 NLRP1 PCNT MYH11 PDE8A TBC1D17 PDIA4 SLC30A4 DDX56 CCDC137 MPST NKG7 INHBA TBCD ASPSCR1 CYBB ISG20 NAT9 RNASEP_NUC TCF4 SNORD22 LSM14B DOCK7 TXN2 DOCK4 PSEN2 ARHGAP17 TMEM104 UAP1L1 SNORD17 ZCWPW1 SNORD15 VDR ZFHX3 ATP13A2 RBM19 NAV1 GALK1 TMEM214 TNIP3 NDUFS7 RASA3 IFNG IRF8 FAN1 USP35 CGAS CHD3 IRF2BPL HK2 PLD3 DPP7 PDLIM4 SHARPIN GLRX5 SSRP1 ZAP70 FMNL3 PIK3IP1 ALDH1A2 NAA15 LNX2 RGS10 NAXE TAF3 SCARB2 TSEN34 DDX27 PALM3 CAMK2B SLC4A2 OASL SAMHD1 BNIP3 COLGALT1 GUSB
Down-regulated by SARS-CoV-2 in ferret nasal wash from GSE147507 LOC101676428 BTBD10 CAPN14 SLC5A8 SPINT1 CD9 CDA EHF HPGD SERPINE2 PRKAA1 TOB1 TMEM71 MUC1 LSM10 MXI1 SPOCK2 ST3GAL6 S100A16 SF3B1 WLS EXPH5 MUC4 ST3GAL2 PROK2 S100A12 NFE2 NDFIP1 SNUPN PROSER2 GABARAPL2 GABARAPL1 NR1D2 CYP4F8 PBX2 HDHD2 EHD3 PLEKHS1 UCK2 BIN3 BIN2 HECW2 PADI4 HBP1 WDR5B PADI1 MS4A7 BAZ2B SAMSN1 DEDD2 FAM110A CYB5R4 EPB41L1 GJA4 CYP2B6 LIPH MCMBP ANXA1 DUSP1 JUP TMEM40 TMC5 GMIP GPRC5A RNF146 SULT1B1 AFTPH ABCC10 DPYD MYZAP POT1 BTG2 MEFV ABHD5 BTG1 ABHD2 AREG TMEM164 MYO6 RFK TCP11L2 EMB RIPK2 PCMTD1 CGNL1 SERPINB2 MEF2C DGAT2 IFNGR1 ARG2 FOS RNASE6 F3 F5 TMEM154 TMEM59 ADAM19 SLCO4C1 SLCO3A1 TOM1L1 PELI2 HCLS1 PLCB2 SLC29A1 PIGV TUT7 RARG PTAFR MTMR14 SERPINB10 PRKAG2 PIGX RCSD1 CCNDBP1 PTGS1 PTGS2 ANXA9 PGLYRP1 CYP2F1 PAIP2 CSGALNACT2 MAP3K3 S100A2 PLCL2 TMPRSS13 NCCRP1 SDCBP2 C1ORF116 RAB38 JAML ZYX SLC25A33 SLC28A3 TSPAN31 CREBL2 NTPCR FOXO4 CXCL14 C6ORF132 FAM214A FAM117B KIAA0513 CDH1 USP2 WDTC1 ATP8B1 RBPMS FBXO32 CDC42EP3 PDCL RAB5A RAB3D FAM49A TPMT HVCN1 CREM ATP12A STK10 CLEC5A B3GALT2 PLS3 SH2D3C MACC1 BMX MSL1 ESRP1 CPD SERINC2 KCNK1 SLC26A6 KCNK5 ST6GALNAC1 ST6GALNAC2 LRRK2 LMBR1L EFCAB14 TREM1 DUSP14 CD300LB PHACTR4 LBR PHACTR2 CHUK CYP4B1 BPGM KLF5 MYO1F KLF7 RP2 EVI2B PPM1D IMPDH1 ASPH MFSD14A TXNIP MET NECTIN4 CD101 ACPP RNF13 FHL3 SRI LRMP RESF1 CYSRT1 HHEX DCAF11 DCAF12 PGM2 TRIM24 PCDH1 CCNJL ENTPD1 SLC35A5 ACSL3 IL1R2 KRT4 SLC12A2 DHX40 MALL CRISPLD2 SOAT2 SLPI HECA RUBCNL CALM2 EPAS1 WBP2 AQP5 MYL12B RAB11FIP1 CHAC1 STK38L CPNE2 MAL2 LOC101686805 ARFIP1 CPNE3 EGR1 GADD45A TNFSF14 SH2D1B PPBP RAB27A BTC FCHSD1 RNF144A MYO5C SPRTN FBXL3 ITM2B WFDC2 GDE1 PPL GSKIP C7ORF57 RCBTB2 RASSF2 RINL BPIFA1 KAT5 TSPAN1 PDK3 ATP6V0A1 SCN1B STRADA KLHL2 AMPD3 RHOD CNFN IL1A CRNN CCNG2 TFF3 TLR8 TAX1BP3 IL18R1 SGK1 DAZAP2 AHCTF1 LOC101680039 TMPRSS4 MOGAT1 OMA1 TMPRSS2 KRT23 ADRB2 CTSV DUOX2 SEC14L4 PENK STK38 DPH5 TNFAIP8L2 HTATIP2 MAP7 CD37 MPZL2 MPZL3 CAP1 SPRYD7 QPCT PARP8 TJP1 GAN HNRNPH2 CD48 ANKRA2 ECM1 CSTA GBE1 CST6 HERPUD2 VMO1 CXCR4 XDH RAC2 FAM3D METTL9 SPINK5 SPINK7 OSM KLHL24 ATP1B3 UBE2B LMO7 TYROBP GRHL3 ARHGAP24 DOK3 CCPG1 CD300E RELL1 CASS4 MYADM YPEL5 IVNS1ABP YPEL3 RGS18 RIPOR2 RGS14 UBXN2B SCEL PAK1 HSD17B2 PERP MYH14 IDH1 MGAM CAST PRNP TMPRSS11D TMPRSS11E ADGRF1 SELP SELL TSG101 CRISP3 DOCK5 SLC2A1 ARHGEF28 SEL1L3 ARHGAP15 RASGRP4 RGS3 IL18RAP RGS2 HADH MFAP3L MMP8 MMP1 GGH SLC52A3 NFKBIZ ARAP3 GPCPD1 CLK4 ELF3 IRF6 NFKBID R3HDM4 CXCL8 B4GALT4 USP32 HSPB8 AGAP2 HMGB2 AGPAT1 AGPAT2 ADGRE3 GRK6 NRIP1 IRAK3 CASP7 SARAF DAPK2 ANXA11 PLAUR TIAM2 CAT ALDH1A1 ABHD17B ALDH1A3 PITHD1 SHLD2 TAF7 LTF STEAP4 KRT80 TUFT1 THBS1 PPP2R2A NR3C1 ADD3 ENDOU RMND5A ARHGDIB MAPK3 MAPK1 BPNT1
Up-regulated by SARS-CoV-2 in ferret trachea from GSE147507 LUM C5ORF15 TYW3 FRS2 SYTL5 LARP4 SLC5A8 EML6 ABCA12 RFX7 BMT2 YME1L1 PIH1D3 CPEB4 PI4K2B ZNF277 PON3 FRMPD2 NCAPG FNBP1L CLDN1 CD2AP GPR155 PPP4R2 FLRT3 MYB SV2B WDR72 LURAP1L EXPH5 EPSTI1 CHST9 PLK4 VPS13C SLC16A10 NR1D2 CLPX RAD18 CDCA2 PATJ HHLA2 SMC6 PHAX SMC4 ARPP19 SMC5 HACD3 SMC2 DSTYK ALCAM STMN1 SCP2 AP1S3 MTERF1 PRKACB CEP76 ZNF367 CP FAM126A CENPE CENPF SULT1B1 CENPH AGO4 CENPJ PIGN EXOC1 CENPQ ERGIC2 ADGRL3 SKA1 ZC3HAV1 TRIM2 AEBP2 PRDM10 MTDH SKA2 SULT1C4 TMEM168 MECOM MYO6 CASP10 LOC101678990 CEP55 DLGAP5 MBD4 CCDC162P MBNL1 HELLS SLF2 WDR19 UBE4A FMO2 P2RY10 TMEM156 RYBP GATM BDH2 SLCO4C1 AGBL3 HYLS1 SRFBP1 ERO1B ZSWIM2 SERPINB13 ZNF572 SNX13 LOC101688321 HSPA13 NUDT12 IFIH1 RNF138 FAM102B WRN PIP4P2 UBL3 GCNT4 RIOK3 ZNF566 ZNF445 ANKRD29 MAP3K1 MSH2 HIPK1 DCDC2 HIPK3 FOXP2 SLC9A4 CNIH1 ACAP2 SLC9A7 SYPL1 PKP2 DSC1 MAD2L1 RNF32 POGLUT3 UHRF1BP1L DGKB BEST3 JAKMIP2 CEP128 RAB23 RBBP9 STX7 KPNA5 HMGN3 KPNA3 SLC25A46 PMS1 CCDC18 TIA1 GLMN NBEA FOXN2 NDC80 RNF168 DMXL2 C18ORF54 ADSS2 ZNF654 ATP8A1 CBFB CUL5 FMR1 FAM107B CDC14A IPO7 IPO5 OSBPL11 NIPBL BTBD3 NEK2 CEP350 SLC38A9 TXNDC9 TRIM66 ZKSCAN1 TAPT1 RFC4 ITGA2 CDC5L NIPSNAP2 CUL4B CDK8 SP3 MFAP3 PTPN20 DSG2 DSG3 METAP2 SHC4 LRGUK UBR1 FBXO45 ZMPSTE24 ADAMTS14 TNPO1 RDH14 C21ORF91 FNIP2 SKIL FNIP1 STYK1 FEM1B ATRX GZMA ERAP2 SYT16 ASPM ASXL2 C1D EIF3M CD109 TXNIP TRIM37 CAGE1 CCDC60 EIF3E CSNK1G3 NXT2 SEMA3E CCDC47 SEMA3C TTK ZBTB40 PPM1E MTRF1 EFR3A OPA1 NHS MTREX ITGAV CARNMT1 ATP7A OIT3 EIF2A ESCO2 SCAF11 DDIAS SFMBT2 GOLPH3L NEIL3 XRN1 CCP110 CRISPLD1 ANP32E TFAM DNA2 UHRF1BP1 LOC101679377 AHCYL2 LOC101681442 LRP4 AQP4 CHORDC1 MAL2 CPNE3 DENR POF1B B2M N4BP2 YES1 ARRDC3 ST8SIA4 ALG6 ARRDC4 BROX RASSF9 COMMD8 IFI44 BTC OCLN STAG2 GOLGB1 MYO5C ACSM3 TMTC3 MIER3 PPAT MIER1 KIF21A TRPM7 ZBED5 CPLANE1 KLHL4 MLF1 TLR1 PTPRD RAP2C KITLG PDIK1L KLHL8 DMC1 G2E3 DEPDC1 TLR6 SLU7 TLR3 TRAM1 AHCTF1 KIF11 CETN3 INTU TOP2A KIF15 HNF4G NMD3 HEPACAM2 KRT23 TWF1 CTSS ZMYM1 ERI2 ST8SIA6 KIF1B TMED7 GABPA ZYG11B ETAA1 DPY19L4 STK17B XPOT CMPK2 SPAG17 ANKRD13C ZDHHC20 LOC101684774 ROBO1 XPO1 PCM1 SCML2 SPTLC3 TBC1D32 FAM3C MGAT5 KANSL1L RAB8B REV3L GEN1 GINS4 CCDC158 RSBN1 DNAJB14 KLHL24 SGO1 UBE2T FAM161A KIF4A PPIG STAM2 OTUD4 CCDC146 SAMD9L MANEA SCEL KIF5B RGS22 TBC1D15 TMPRSS11A SLC30A4 TTC33 DNAJC12 CKAP2 LAYN SLC30A1 TMPRSS11D SSH2 TDRD1 MDFIC DNAJC10 DDAH1 COL21A1 DDX6 LPL TRHDE DDX60 SYDE2 PPIP5K2 CLSPN DTWD1 QSER1 CNTLN ABCC5 DNAI4 GALNT3 CAV2 USP24 NAP1L1 ARAP2 TGFBR1 ATP13A5 ATP13A3 DIPK2A BMPR1B DNAH5 CXCL9 USP33 MTR C4ORF33 ELAVL4 UPK1B TMEM209 ECT2 USP31 MAN1A1 CCDC186 FAM83B CXADR LGI1 MIGA1 EYA4 POLQ ANGEL2 DCK FNDC3A ANXA10 SHCBP1 SLC4A8 THAP5 REST LNX2 DENND6A RBM46 ABCE1 B4GALT6 ERCC6L RB1CC1 SLC4A5 SLC4A7 SENP7 UFL1 RPS6KA6 KYNU SIX4 TENT2
Down-regulated by SARS-CoV-2 in ferret trachea from GSE147507 CDK18 AFAP1 SOX13 SOX10 DES COL1A1 SLC5A9 ORAI1 DCHS1 MYL9 ASB2 ADCY5 ADCY4 ADARB1 SLC5A2 MRGPRF ARAF SNX31 ADCY8 DLL4 SPDEF CREB3L1 GMDS CHST11 ANKS1A NGFR DMPK MCAM GJB1 PTP4A3 RIPPLY1 SLC6A7 FOSL1 HSPG2 BCAM SERPING1 CHST2 ATG2A HPD MRVI1 PADI2 TTYH3 TTYH2 PDGFB PLA2G5 ENO1 GATA2 ISLR KCNMB1 FAM110D MYO18B ZBTB7C GARNL3 ACE ITPK1 TESC ANXA6 NFAM1 NFATC4 NFATC1 GMIP DUSP7 INF2 NCOR2 MMP14 PXDN GIPC3 RARA HOXD4 HOXD9 LIMS2 BTG2 TINAGL1 ELN RASAL1 AEBP1 PEAR1 SHF CSRP2 CSRP1 COL23A1 BGN CASTOR1 LRG1 HEYL SEPTIN9 COL4A1 ADAM15 COL4A2 NFIC SMOC2 NDUFA4L2 ANGPTL4 FMOD ENG GRN TGFB1I1 PYGM JPH2 GLI1 PTGS1 FADS3 MPRIP GCNT3 RSPO1 SLC17A9 PGLYRP1 RBPMS2 SEMA4A RASL10B CKM TPM2 AGT FOXP4 KIAA1614 OLFM2 PLOD1 DMWD LRFN1 ZYX ROR2 DHCR7 TRABD2B COL16A1 RBPJL CHPF CSF1 PLXND1 RASL11A PLOD3 SH3BP4 FLNA SLC26A10 FLNC GRB10 NKX6-1 SLC25A48 SH2B2 IGFBP2 SEMA6C TMEM132E SEMA6A SEMA6B WFS1 OSBPL5 TMEM120B MAMSTR NFKB2 PITPNM2 FRMD4A ESAM MAP3K11 CDC42EP2 LHX6 CDC42EP1 BCAT2 CD151 OLFML2B HID1 VTN MMP28 PMEPA1 IGFBP7 C1QTNF1 SEMA7A SLC14A1 GPX3 SLC37A2 ITGA5 SH2D3C AVPR2 GPX6 MFAP4 APOA1 SCGB3A1 BCL3 ITGA8 PECAM1 NES ITGA7 CDR2L BCAR1 ST6GALNAC2 USHBP1 TRH RAP1GAP TRIM47 EMILIN2 EMILIN1 ZNF865 CD300LG GAL3ST4 B4GALNT3 PPP1R14A NTRK3 LRRC8A VWF TIE1 KCNK17 CPT1C MYO1F SYT11 KCTD15 PLEKHH3 COL15A1 ZBTB47 ITGB4 DYSF FHL3 PRR5L SEMA3G BARX2 PPM1F TSPAN11 NRGN SYNE3 ADAMTS4 MYBPHL SGCA CSK PGM5 SLC25A23 ADAMTS7 EPHB4 CCNJL SLC12A4 P3H3 MFSD12 VWA5B2 P3H1 SFRP5 AZGP1 CRISPLD2 SOAT2 SERHL2 OBSL1 TLN1 ITIH5 RAMP3 TMEM63C TAGLN LRP1 RASIP1 AQP1 STS DAG1 HMCN2 SRPK3 STAC LMAN1L ARRDC2 PAQR4 IGF2 VASN VASP BPIFB1 BPIFB2 PPP1R1B SMTN WNK2 BPIFB4 FBXL7 NECAB3 DOC2B PDE1C PIEZO1 WFDC1 TXNDC11 TNS1 INPP5A CD79A BPIFA1 TSPAN9 ANPEP KCNN4 SOX8 AGFG2 TNS2 RGMA CLDN10 MAPT CLDN15 ID3 VWA1 FAM20C TFF3 CAMK1 FAM20A CALR RASL12 COL18A1 SPTBN5 RTN4R SDC3 ACACB MEOX1 PRX IL34 ZCCHC24 TMEM176B SUSD2 GAA UBALD1 GFRA3 ANO1 SGSM3 KCNQ4 B3GNT3 TCAP PNPLA2 LOC101673770 ROBO3 IGHM ROBO4 POPDC2 SLC43A3 CRIP2 EGFLAM STBD1 NPY TGFB1 LMO2 PDGFRB SCARA3 OSR1 SHISA4 EEF1A2 COL5A1 COL5A3 MELTF DPEP2 GRINA PNCK GALNT15 PLVAP RIPOR1 PRDM6 GALNT18 FBLN2 MPO NKD1 LOXL1 NDRG2 REM1 LMNA ATOH8 SCUBE1 RASD2 DUOXA2 GPC1 MPZ SLIT3 MYH11 NIBAN2 WSCD1 SLC30A3 ARHGEF15 ARID5A ARHGEF17 NR4A3 SELP COL6A1 GNB3 COL6A2 MATN1 CASQ1 MFGE8 MATN4 DOCK6 PKDCC LTBP3 SLC2A4 PLAU LTBP4 HTRA1 LPO SLC2A6 CACNA1G RASGRP2 CHRDL2 ETS2 NR4A1 ACTG2 RASGRP4 CAMSAP3 CNN1 CHAD A4GALT ADGRG1 MMP7 SUN2 EGFL7 PLA2G2D LAMB2 LAMB1 BMP6 ACTA2 FES TMEM214 GPSM1 NPR1 HSPB7 HSPB8 LMOD1 NCALD SLC3A2 LAMC3 ABCB9 CLEC14A PLD3 HRH2 TMEM204 PDE4A PDLIM7 RHBDF2 NOS3 LGI4 FGR FAM167B CLDN5 LMX1B LTBR ACKR1 COL8A2 LTF CAMK1G SLC4A3 ACTC1 THBS3 CYGB ACAN SPEG CYYR1 SCARB1
Up-regulated by SARS-CoV-2 in intestinal organoids 24hr differentiation from GSE149312 ACOT9 STARD7 HSPA1L C20ORF27 DNAAF5 GDAP1 DKK1 HSPE1 HNRNPM HNRNPL ARMC6 HMBS TOLLIP ARMC7 PSMC5 PSMC2 CD9 RBP1 PSMC3 VIM BAX RPL22L1 FSIP2 HCP5 PLCD3 MT-ND6 POMP RETSAT NPRL3 TSIX GPATCH4 CREB3L1 ASNA1 KRTCAP3 PSMD8 PSMD6 PSMD3 S100A14 AKT2 PSMD2 HES1 S100A10 HOXA6 S100A11 BATF2 WNT10A TSPYL2 NEBL STARD10 C9ORF69 VPS37B LRRC75A-AS1 PRRC2A NUDT16L1 ZNF16 EHD1 SQLE FOSL1 RPS14P3 PRKAR1B FASN SFXN4 PPT1 HYOU1 PSME3 C19ORF24 PID1 RPL5 RNPEPL1 PLEK2 RPL35 POP5 RRP1 POP4 MRPL12 RPL8 MRPL20 FAM134C RAVER1 EPB41L2 BLOC1S3 FASTK PRKAR2A NAPRT RPL39 JUNB IER3 SDF2L1 NUDC FGFBP1 JUP SSR3 H3F3B EMP1 NUTF2 MRPL24 TMC6 SUMF2 GIPC1 FXYD5 PLEKHM2 PIGM ARF5 GRAMD1B ELOF1 ARPC1B AREG OAZ2 STYXL1 BBC3 HSD11B2 TRMT112 LDHB MRPL40 CSRP1 SH3BGRL3 RRS1 SERPINB5 SERPINB2 SF3A3 BRD1 CLUH ZNF580 AES PSMA6 DDB1 RNF126 FABP5 EBNA1BP2 C6ORF47 LINC00506 PSMA3 AGPS PLP2 ZNF579 LAMTOR2 TKT GSTP1 PRKAG1 FSTL3 PRSS23 CENPB SMG6 LMAN2 PSMB6 LOC101927391 PSMB4 ENSA PSMB2 AGR3 AGR2 P4HTM FADS2 S100A2 FBXW8 RPS9 CTNNBIP1 RPS7 FAM118B C1ORF122 YIF1A PPP1CA TUBA4A FBXW2 COPRS OLFM4 RAB35 MAPKAPK3 TUSC1 PKP3 SNRPF ERP29 SNRPE NHP2 RNA45S5 FKBP2 ODC1 SRSF1 LOC102724532 AUP1 C6ORF132 HSP90B1 PYCARD ICT1 CDH1 GTPBP10 FLNA PITX1 RPS2 MISP PHLDA2 ATP9B HMGN2 IGFBP2 TRAPPC3 OSBPL5 C21ORF59 DYRK1B TRAF1 LSM2 TRAPPC9 FTSJ1 LSM6 MED27 FANCE DGKZ FRMD5 DDOST MED25 TMEM11 RAD54L2 ESAM TACSTD2 HSPBP1 BTBD2 ESD ZNF408 SEMA7A SLC38A5 FUS EIF5A HSP90AA1 HMGCS2 HMGCS1 DHCR24 FAM219A TMBIM1 RN7SK ESRP2 ZNF639 RMND1 BCAR1 GTF2A2 ZC3H3 CYR61 DNAJB2 APH1A DUSP10 CAPZB SMARCC1 CPT1A MID1IP1 TSPAN17 KPNB1 VAPB KIAA0586 IMPDH2 ZNF618 BOLA3 CBLL1 NECTIN3 CEBPA SMARCD2 RPL10A SRM TRIM29 BAK1 SNRPB2 TRIM28 CSK SEC11C EPHB2 SNRNP35 HNRNPA1 PCDH1 CD320 ACSL3 SP110 IL1R2 TRAP1 ECH1 IFRD2 ACTN1 KRT8 KRT7 MFSD12 TM4SF1 CD2BP2 TRIM16 PREB TLN2 TMEM63A SPRR3 ZAK IFITM3 STX18 ADH1C CISD3 PSMB10 ACTB SNRPD1 PEG10 ZNF703 POF1B NUS1 TMED9 C9ORF152 SLC34A2 MANF ALG3 IL17RE ZFPM1 SDC1 TAGLN2 NOL11 SPRR1A APOBEC3C VARS HGH1 FCF1 TXN MRPL4 PELO LGALS3 RPS18 RPS19 ZNHIT6 RCC1 CCDC94 STAT5A WARS SLC33A1 PTGES3 TNFRSF12A FUBP1 UGDH KRT19 PRPF19 ID1 KRT18 RPUSD1 KRT17 ID3 CRELD2 CALR LOC101930085 PTPRU DDR1 DHX9 CETN2 CTSZ TWF2 CTSV FXR2 BABAM1 STK38 C1QBP GNPNAT1 TMED3 FADD PHGDH CLIC1 TOR3A NPM1 MRPS23 AP2B1 UBALD1 CREG1 PRMT1 ZDHHC12 APRT THOC7 ANO1 RGP1 MARS SGSM3 CD47 TACC1 APBA3 LLGL2 FOXA3 FKBP11 AHCY TOMM40 PRIM2 GNAI2 GYS1 HERPUD1 SERP1 HYAL2 MGAT3 CCT7 CA12 DIMT1 CDX2 SHISA5 PDAP1 SDHC ATAD3B DOK4 UBE2S DNAJB11 SPNS1 PPIF CDK2AP2 MYADM PPIB RPL26L1 CD82 ATF6B NDRG2 NOL7 LMNA TMEM246 GPC1 BANF1 CAPN1 MORC2 REPS2 GAS2L1 PDIA4 PDIA3 ADPRHL2 DESI1 DSTN MESDC1 ADGRF4 DDAH2 ALDH3A1 SELK NABP2 THOP1 BLVRB CCDC124 CPLX1 VCP RPP30 KLHL11 SLC2A6 ETS1 MYDGF EBP FPGS SBF1 KDM4A ZFHX2 LIMK1 MMP1 HSPA5 CACFD1 MKL2 NAP1L4 PYCR1 SLC52A2 NAP1L1 RPS3A BMP7 NFKBIA AKT1S1 EEF1G PLEC PSMD11 USP36 CXCL8 B4GALT1 PSMD13 DDX49 ESRG PYCRL PSMD14 TNFAIP1 LAMC2 CXCL3 DPP3 SYNGR2 IRAK1 ISOC2 RBM10 H1FX TIMM8B KDM2A FAM98A NAA10 LSS PLA2G16 CLDN4 LTBR RPS6KB2 RBM42 S100P TAF6 SSBP3 OTUB1 AURKAIP1 VAC14 CCDC167 LAMA3 YBX1 DMKN HSPD1 OASL RPS4X ARHGDIA NT5DC2 RPS6KA4 PPP2R1B SEC61A1 POLD2 TRA2B PDE6D
Down-regulated by SARS-CoV-2 in intestinal organoids 24hr differentiation from GSE149312 CDK19 STARD4 SYTL2 ZFYVE26 C9ORF40 SLC5A9 CYP2C9 XPNPEP1 XPNPEP2 ZC3H11A RBP2 CDA C2ORF88 ENPEP MT-ND5 HPGD MT-CO2 SLC5A1 GLS GABPB2 ADCY9 SLC5A3 ABAT PDXP SULT2A1 CD2AP MUC2 PRAP1 CREB3L2 MXI1 CREB3L3 LINC01602 STOM MS4A10 PRR11 DNAH12 FLJ22763 LOC389602 VPS13B VPS13A ELL3 ACE2 SLC6A8 WDR60 TDP2 HOXB5 CFB WDR48 CDCA3 HHLA2 MT-ND4L MS4A8 COPS7B GNS CDKN2B-AS1 TMEM92 SLC6A4 LIPA LYPD8 C6 ZC3H12A STMN1 PROM1 ANKIB1 GSTM4 FUCA1 ACE CCL20 SEC16B LRRC28 A1CF GOLGA2P5 CENPE GLUD1 LOC100506098 CENPF SULT1B1 SLC7A9 ADI1 CENPJ GIPC2 FXYD3 CENPK C4ORF3 CENPN ACHE IL18BP SERPINA1 GPT LDHD LDHA FLVCR2 FLVCR1 ZNF224 ZNF223 FARP2 PKLR DGAT1 IFNGR2 TPK1 SLC39A11 ELOVL7 FMO5 PTGR2 RNASE1 PTGR1 BAAT GUCA2A FABP2 LOC105377924 GATM DHRS9 BDH2 FABP6 RFWD3 HADHA AADAC ETNK1 PLIN2 RNF123 GCHFR OAT SLC28A1 PHLPP2 GRN LRRC19 MT-TV SMG1 PIGR QPRT MT-TT AFP ING2 PIGZ FCGRT FADS6 AP3S1 GPA33 RIOK3 METTL7B SLC17A4 APPL2 GK AOC1 SSUH2 GPT2 CYBRD1 ATP11B NEAT1 ERP27 NAAA DMTF1 PDCD4 SREK1 RNF186 SLC25A37 DGKA C11ORF72 PLOD2 C1ORF115 GGA2 IYD RNF19A USP2 SLC39A4 C11ORF86 SLC15A1 BNIP3L BTN2A1 C3ORF62 TMEM120A MAF LCN2 MALAT1 TPP1 INO80D PFKFB3 SLC26A3 ZNF770 RAB3B CALCOCO1 SLC26A2 FAM13A AK4 SAT2 CYP2C19 SESN3 ANKRD10 PI3 NEK2 CLCA1 HACL1 PLS1 LINC01224 GPX3 MSL1 DAB2 NPC2 IMPAD1 ESPL1 APOA1 CPD ECHDC2 EFHC1 MCM7 TMBIM6 NUMB CPO RETNLB LEAP2 SHMT1 ONECUT2 HMMR PTPN22 CYP3A4 CYP3A5 MDK TKFC LOC100287497 UGT2A3 MDN1 SLC37A4 TRIM40 PLA2G12B DST ATRX UGT2B17 TM6SF2 ATOX1 ASPM AQP7P1 MYO1A SUCLA2 MGAT4A APOC3 LINC01559 SMPDL3A KCTD13 SMIM24 SEC23A TRIM31 PSCA KIAA1551 KIAA0101 TTR CNNM1 PTER SIN3A SLC35A5 ESCO2 CIDEC ACSL5 SLC51A TM4SF5 SLC51B OTOP3 SEPP1 MTURN SFRP5 CYP2U1 TMCC1 GLOD4 GLOD5 ZG16 MT1G SUCLG2 HECA KIF20B BCORL1 SLC46A3 AKAP9 TRANK1 NDNF IL2RG GLRX AQP3 STX12 CPNE2 FER1L4 SLC6A19 COG8 TNFSF15 SMLR1 SLC11A2 ARRDC4 ACADSB ANK3 TUBG2 HLA-G BTD CYP27A1 ACER2 LOC154761 TPX2 VNN1 MEP1B MEP1A ITM2A ITM2B LCORL CES2 MACF1 MAGED2 LGALSL SESTD1 GBA3 GOLGA4 SYNPR ANPEP SI FTH1 RALGPS1 PDK3 APOB APOBEC1 SLC10A2 GAB1 NME4 ZHX1 COX6C VEGFA BMS1P5 PDZK1IP1 CEACAM1 CEACAM7 CCNG2 TFF2 TFF1 ALDOC ALDOB RHOU LOC105375166 SGK1 C17ORF78 GUCY2C LINC01133 CLIC5 HIBADH MAOB PTPRR MTTP MOGAT2 MAOA SLC35F5 SUV39H1 TOP2A TMPRSS2 HNF4G BRCA1 CLYBL MLN KLK7 DUOX2 UGCG AUH ORMDL3 TMED4 TNFAIP8L1 CD36 PCK2 PCK1 TM4SF20 PAG1 CBR1 TMEM176A MME TMEM176B SUSD2 SLC35G1 AKR1C4 ERBIN MLH3 RANBP9 SPCS1 DHRS11 DIRAS2 SLC43A2 GDPD2 GDPD3 ADIRF MKI67 PEPD FCGBP CST3 PGRMC2 ACADM FAM3C NUSAP1 GIT2 RARRES1 G6PC CA13 PHYH NPNT UBE2C KLHL24 BTNL3 MUC3A ARHGAP26 TMEM253 AIG1 GLTPD2 GNPDA1 GPD1 BUB1B GSTA2 GSTA1 CRYL1 ABCG1 TBC1D23 UCA1 ABCG2 YPEL3 PNCK GDA PRDM7 DNAJC25 PBLD FUOM NDRG1 AURKB TBC1D15 PDE8A MGAM LOC101928820 MANBA MUC17 PHGR1 AUTS2 EPHX2 HELZ NAALADL1 TBCK TMEM236 NAT2 CDHR2 MATN2 CDH17 CLRN3 PYROXD1 SPPL2A UVSSA ESPN SLC2A5 TMEM220 EEF2K CCNB2 CCNB1 ADGRG7 CHAD MUC13 PRODH ABCC2 NAT8B ASAH2B CPS1 ALDH18A1 IRF9 SOWAHA ALPI NFKBID KDM5D SLC3A1 ETFDH SLC40A1 HMGB2 HAPLN4 PLD1 U2AF1L4 DPP4 HK2 SCIN CA2 HEBP1 CA1 CA4 ERICH4 BLNK VILL HIST1H1C RRM2 ALOX5AP PPP2R3A TBC1D2 GALC C19ORF66 MYO15B CCDC170 B4GALT6 KDM3A TMEM41B AQP11 PALM3 ZNF292 LAMA1 YBX2 NCMAP SLC4A7 BNIP3 NOS2
Up-regulated by SARS-CoV-2 in intestinal organoids 24hr expansion from GSE149312 UNC13D TEX30 NGDN HUS1 ZNF271P FRS2 BTBD10 DKK1 MED8 HNRNPM OSTM1 PSMC4 PSMC2 FDX1 ETHE1 TMEM126B GPD1L HSPA1A HNRNPF TMEM126A CIAPIN1 FSIP2 MT-TM VPS29 PLCD3 ACOT4 SF3B4 SGMS2 POMP HPGD RALA GHITM C4BPB CLDN1 PSMD9 LSM10 PPP4R1 MTA2 FLRT3 PSMD6 TGS1 PSMD1 NR2C2AP S100A10 S100A11 TNNC1 EPT1 PLK2 DNTTIP2 PHKA1 FAM136A FERMT1 ABTB2 GJB3 PLSCR1 PKIB CRYAB PTP4A1 PID1 LXN MRPL19 MRPL18 MRPL20 HSPH1 PLAC8 ZXDC ADNP2 PIP5K1B TIMM17A JUNB IER5 CEP76 ATG5 FGFBP1 ANXA1 JUN ANXA2 DUSP1 ANXA4 MCRS1 TMCO1 CGN EMP1 TIMM23 SAMD4A C12ORF29 BHLHE41 PIGG ABHD5 YTHDC2 ABHD3 CLTB LRRC1 AREG MRPL33 C12ORF45 HSD11B2 UGT8 MRPL41 RIPK2 SERPINB5 MBNL3 CDKN2B ARG2 ELOVL7 SERPINB8 F3 MRPL47 GTF2H5 SERPINB6 BAAT GUCA2A KIAA0196 FABP2 TOM1L2 LOC105377924 FABP5 PSMA5 EBNA1BP2 KIAA1279 AGPS SMAGP HBEGF ZNF697 LGR4 CCL15 SFTA2 TRUB1 PRKAG2 FSTL1 SMG8 IFIH1 TUBA1C PSMB6 MINOS1 LOC101927391 SULT1E1 RNF139 GCNT3 MIR22HG ANXA9 AGA AGR2 GPAT3 TMEM14A ZMYM6NB RAB2A CORO2A GK TPM4 C1ORF122 LRRC66 DCDC2 MOB3B HAT1 PSAT1 LY6D PKP2 SLC25A33 SNRPG SLC25A32 COPS9 DSC3 ODC1 PPP1R15A GTF2B SRSF2 AHR CLU CTGF PYCARD TUBB3 NBN TPM1 NCDN ASCC3 SLC25A46 PHLDA2 ATP9B MB21D2 TRAPPC3 TRAPPC8 FOXN2 FRMD3 HOPX MYD88 TRAF4 HPSE SP140L MIR31HG SLC26A3 TPMT CUL2 TACSTD2 CYP2C19 HSPBP1 CYP2C18 NHSL1 BAG3 MMP28 MPC1 ZNF649 PLXNA2 TXNDC9 RABGGTB BICC1 MCC MARCH3 RN7SK DNAJC9 SFT2D2 GTF2A2 UFD1L SNAP23 AMD1 NDUFB3 ZMPSTE24 DUSP14 DUSP11 DSEL FUNDC1 ME1 PHACTR2 DNAJB9 BCAS1 SKIL MCL1 COA6 SLC36A1 UGT2B15 NDUFA4 MID1IP1 LYSMD3 KATNA1 DNAJA1 NAGK PPM1D RAB10 BOLA3 TRIM36 SPAG1 RAB18 BLZF1 CCDC71L SEC23B SRI PRR5L HSD17B10 LOC105369340 OPA1 POLR2F PCDH7 SLC25A24 SEC11C POLR2K DCAF13 POLR2L C3ORF38 IL1R2 ARL14 ENTPD7 MRPS18C KRT7 CRNKL1 EREG TM4SF1 SHTN1 IFI27 LACTB2 MT1G RTCA TMCC3 TRIM16 WTH3DI EPHA2 CALM2 CCDC84 MT1E EPAS1 AHCYL2 CCNC MYL12B STX11 NIPAL1 DHX35 OGFOD3 CHAC1 MAL2 TCEB1 CHAC2 C3ORF14 NUS1 EGR1 SURF2 TMED9 GADD45B GADD45A XRCC4 SNHG9 RAB27B ALG2 C8ORF4 OVOL2 WFDC21P COMMD8 TUBG1 ARC NCEH1 PDE12 CRYZL1 DPCR1 FBXL5 CFTR IFI27L2 IL1RN MGST2 MGST3 GSKIP DCUN1D1 TXNDC17 NLN HNRNPLL LGALS3 DHX15 TSPAN8 KIFAP3 TSPAN2 ATP6V1C1 ATP6V0A2 EDN1 AKIRIN1 NCOA7 NMI C10ORF99 KLHL5 IL18 TYK2 KRT10 NME1 RHOB RAP2B KITLG ID1 KRT17 ID3 ID2 AKR1B10 CD24 SGK1 LINC01133 CLIC5 FASTKD1 ZCCHC10 STRAP KRT23 KRT20 KALRN SOCS3 RAP1B YAE1D1 ZMYM4 CTSL DPH3 STK38 NQO1 IL33 PRMT6 SDCBP2-AS1 GCH1 AKR1C2 SACM1L AKR1C1 MRPS21 CACYBP AKR1C3 ANO1 F2RL1 CD47 DFNA5 ANKRD13C AHCY MTRNR2L1 SLC20A2 ARNTL2 CLDN23 PPP2CB CAMK2N1 MFSD2A CD55 RARRES1 HS3ST1 ARHGEF35 LMO4 UBE2A ACYP2 GRHL3 BAMBI FAS CDK2AP1 AMOTL2 DEGS1 ABCG2 STEAP1 UBE2N INPP1 RGS16 LOXL4 BCCIP IFI6 COMT ARHGAP42 TWISTNB FAM177A1 TRAPPC13 ROMO1 BORCS7 PHGR1 NAT1 TMEM230 GEM NR4A2 ADGRF1 PRPF3 NMUR2 USP42 GCLM SELT LINC00941 SRP19 ATP6V1D RPP30 ACTG1 TRIAP1 COX7A2 HIGD1A DTWD2 RGS2 ADGRG6 PMAIP1 MLKL TSFM HSPA6 MMP1 CBX4 CAV2 HSPA8 NCBP1 CAV1 HSPA2 OAS1 PJA1 ATP5F1 SFPQ ITGB1BP1 FAM84B CYCS FAM96A CXCL8 MCUR1 PSMD14 CXCL2 CXCL3 RPF1 FUT4 NT5C2 PDLIM2 CA2 CA1 CASP7 MFSD1 PDLIM5 KDM6A RWDD3 TIMM8B ANXA13 KCTD1 GLRX2 ANXA10 ATP2B1 PALLD ALDH1A1 AIM1 ALDH1A3 NUP35 TAF9 S100P DYNLT1 RBM45 TAF2 TRIB1 ASNSD1 THBS1 SLC22A18AS RND3 CRYZ CLN5 RBM3 RPS6KA1 ABHD16A TRA2B
Down-regulated by SARS-CoV-2 in intestinal organoids 24hr expansion from GSE149312 CDK18 CDK19 CADM4 MGC57346 HPCAL1 RFX2 PRKAB2 GATAD2B MEX3A CAPN12 SCD VOPP1 TNFSF9 LETMD1 CDA CDK16 CYFIP2 PRSS2 ZNF395 SLC5A1 ASCL2 SLC5A3 CLDN2 PDXP GPATCH8 GPR153 MUC1 PRAP1 KIAA1324 KCNQ1OT1 BBX MXI1 PRSS8 PIP4K2B HES6 KLF11 PRR11 ATP6AP1 PMM1 TYSND1 WDR54 PHKA2 PRRC2C PRRC2B GIGYF1 SLC6A6 SLC6A8 HOXB5 VAMP2 LOC100131257 HHLA2 CDCA7 PDGFB BAZ2B TMEM97 ENO2 TMEM92 TRIOBP RRP9 RBPJ TMEM94 CYB5R3 GUCD1 FAM134A NYNRIN LOC729348 FUCA1 GSTM3 COLCA2 TPI1 GSDMA PHF13 TESC ANXA6 TET2 ASH1L TMC4 CENPE CENPF FAM222B CENPH SLCO4A1 FXYD5 BHLHE40 PAM REN EXOC3 DENND1C GABRB2 SERPINA1 BTG2 GRAMD1A IQGAP3 GLG1 NPTN-IT1 LHPP ATXN1 BRD4 BRD3 EGLN3 PPARA DGAT2 PLIN1 CSNK2A1 IFNGR2 RNASE4 DHRS3 FAM213A FARP1 RNASE1 CLIP2 FABP6 SLC39A10 SMOC2 SMOC1 PELI2 ANGPTL4 PIGT SETD5 WDR45B PIGU CDKN1C ERO1A PIGR QPRT TCF20 FGFRL1 IKBKB FCGRT ADRBK2 ADRBK1 PWWP2A C11ORF49 TMEM38A DEPTOR ZSWIM4 RNF43 YIPF3 ANKRD26 PNRC1 NEAT1 C6ORF136 OLFM4 KAT6A ADAM8 RNF186 CRAT MIR210HG NBAS NFIX SLC27A1 IDUA ANKRD37 CCNT1 UCP2 ZBTB22 PLOD2 RBBP4 CEP250 MACROD1 SLC39A8 C11ORF68 SLC16A3 NKTR KCNH2 ATP9A SLC39A4 SLC15A1 SEMA6A OSBPL7 IGFBP4 BNIP3L TMEM120A IGFBP3 DYRK1B KIAA0430 TRAF5 REEP6 MLXIPL LCN2 MALAT1 RAB5B ANKRD34A ZNF652 PFKFB3 PARM1 PFKFB4 CALCOCO1 COL17A1 FAM13A ANKRD12 AK4 RLF SAT1 C6ORF223 C6ORF106 PLXNA3 CEP350 ZNF766 MAP2K6 ZKSCAN1 SYBU TMEM255B DHPS EIF2AK1 MARCH9 NIPSNAP1 TNFRSF1B PCCA BCL6 SERINC2 OGT TMBIM6 SLC26A6 PRR36 NFAT5 GAL3ST1 NLGN2 RETNLB ZC3H6 ITPR2 UBR4 CYP3A5 PSAP TKFC WASF1 CEP290 MDN1 PGPEP1 SLC37A4 C8ORF58 SMARCC2 RNF24 CKAP2L SPAG4 KHNYN RPRD2 LEMD1 ZFP90 CTDSPL LCK SYT13 P2RX4 TXNIP SMPDL3A GAPDH SMIM24 PFKP ZMYND8 HDAC4 MSLN MCM8 MGRN1 ZBTB44 U2AF2 PBXIP1 SYNE2 REPIN1 ZNRF3 CNNM1 POLR2A CNNM2 EPHB3 SLC25A23 BRI3BP SMARCA1 IFITM10 ECH1 UNC93A SRRM1 PML TMCC1 ULK1 GSAP AHCYL1 APP STXBP1 TMEM63A CCNI LRP1 PLEKHB1 NDNF LRP4 PPP1R3B AQP5 STX10 ZNF703 ATXN7L3 N4BP1 INSR SLC11A2 SNHG7 HLA-A HNF1B HSPA12A IL17RE HLA-G TPX2 CDCP1 VNN1 PPP1R1B ADCK3 CYP2S1 WNK2 CCNY MEP1A RGL3 GRB7 APOBEC3C LDLRAD3 ZBTB4 INPP5D GOLGA4 SOX4 SYNPR NUDCD3 LGALS1 ANPEP TSPAN5 HIVEP3 KCNN4 PDK1 TNS4 PDK3 PDK2 CTSA APOBEC1 TSC22D1 TMUB2 NME4 VEGFA PDZK1IP1 VEGFB PTPRF TPPP3 P4HA1 FAM193A P4HA2 CEACAM7 TFF3 TFF2 ALDOC ALDOA AARS LINC01011 DAZAP1 TNFRSF11A HILPDA KLK1 PTPRR MOGAT2 MAOA TOP2A STC2 DUOX2 ZMYM2 ZMYM3 SH3PXD2B SLC22A18 RRAS MLEC QSOX1 TNFAIP8L1 CLIC3 PCK1 PAG1 MPZL3 UBXN6 PALD1 BCAP31 TMEM176A TMEM176B GAA ANO9 THOC2 SORBS1 MLH3 PDP2 SGSM2 HNRNPUL1 KCNQ1 FOXA2 ECM1 FAIM2 MKI67 PTMS FCGBP CXCR4 LOC100506548 ATG9A DENND4C ZFC3H1 KLHL24 HCG8 HUWE1 MUC3A AXL DOK7 TGFBI MPHOSPH8 YPEL5 GRINA YPEL3 CCDC146 ZCCHC7 ARID4A NRM HDLBP LOC113230 FUOM NDRG1 TMEM123 ARHGEF40 NDUFV1 BPTF SREBF2 USP49 ZC3H13 IDH2 TBCD AP4B1 PDIA6 SYT7 EFNA1 EFNA3 H1F0 NPSR1-AS1 COL6A1 FGFR1 CDHR5 DNAL1 FGFR4 NARF ISYNA1 SLC2A1 LGALS3BP ESPN SEZ6L2 PPP1R9B ETS2 IGF1R TMEM107 ANKZF1 ZNF385A BCKDHA POU2F1 SUN2 USP28 USP21 LAMB3 CMTM7 NAV1 ABHD14B HMGA1 DNM1 DNM2 TGFBR3 CLK1 TMEM219 MAN2B1 LUC7L3 KDM5A FAM60A KDM5B SMIM3 ESRG CHD6 PIK3R2 PLD3 DBP SNAPC3 MCF2L MKNK2 CASP2 PDE4C CA9 KDM6B ARID1A TAF1 SNTB1 SBK1 TRAPPC6A DDIT4 INAFM1 TRIB2 TRIB3 HIST1H2BD DHTKD1 KDM3A RERE ACADVL PRKCSH PALM3 ZNF292 EHMT2 YBX2 RPS6KA2 VHL BNIP3 COLGALT2
Up-regulated by SARS-CoV-2 in intestinal organoids 60hr differentiation from GSE149312 MX1 ANKFY1 MX2 HN1 GDAP1 POLR3A HMBS SCGB1A1 POLR3D ETHE1 RBP2 VPS25 NHLRC2 ACOT4 VPS28 CYFIP2 STAU2 TSIX GLS C16ORF95 ZMIZ1 KCNQ1OT1 PRSS8 SERPINF1 AKT2 HOXA1 ASPDH APOL2 VPS18 LINC00511 TAF9B EPSTI1 LINC00670 GPLD1 PROSER1 TSPYL2 STARD10 RAB3IP C9ORF69 LRRC75A-AS1 TMEM199 MOV10 ABTB1 PSME2 SSPN PRR13 NOX1 LOC100131257 LINC00543 PADI2 OGDH GABARAP HHLA3 MS4A8 PLA2G7 NUB1 PRDX5 PCNX3 KCNMB4 NKX3-1 LOC729348 LINC00896 PRR26 GSDMD LYPLA2 ACE JUP MMP24-AS1 MRPL28 TMEM173 JOSD2 ISX SLC7A7 NCOR2 CCDC9 PXMP4 ERGIC3 SERPINA3 ZNF593 ZNF471 CLTB NOC4L ECHS1 FAM234A CCDC18-AS1 MED18 SDSL HSD11B2 MRPL41 TIMP4 TIGD1 ZNF584 BRD1 STAT1 STAT3 NR1H3 ACOT11 IFT140 MOCOS GSTO1 SNX24 SLC39A11 FMO4 LOC101928103 BAAT DHRS7 MCF2L-AS1 LINC00506 COL4A2 TAOK2 APEX2 AADAC LINC00504 RLIM FABP1 OAT PIGR PYGB GSTP1 LOC101927021 ABCC13 SCAMP5 SULT1E1 PLAGL2 CHN2 METTL7A ANKRD54 GPAT4 RIOK2 METTL7B TMEM14A ZNF445 ZSWIM4 YIPF1 S100A2 FBXW8 GSS GHET1 TFCP2 TRAFD1 UQCRQ FKBP8 SLC25A37 LINC00368 NBAS RNA45S5 KATNB1 ZBTB21 CXCL14 CXCL17 PAPSS2 C1ORF233 BCL2L14 PYCARD RBBP4 MISP BCL2L15 MPDU1 MAP2K5 MAP2K2 DYRK1B FAM217B M6PR TRAPPC9 C11ORF80 FTSJ3 NFKB1 DGKZ DDOST TFDP2 MLXIPL XAF1 ST6GALNAC4 FTL ZNF652 SLC26A3 AK2 LOC101929486 LOC102724434 CCDC144B CYP2C18 EDC4 TOM1 HACL1 LOC729987 C18ORF61 TAPT1 LINC01420 EIF5A TXNRD2 C18ORF8 ZZEF1 BCL9 G6PC3 SCGB3A1 MTRF1L KCNK6 VPS4A LEAP2 LOC153684 C15ORF48 ATP5D C15ORF39 ORC5 TKFC SPR CAPZB SERF2 ZNF623 IP6K2 ZNF622 ACP2 PGPEP1 SLC37A4 NDUFA9 TRIM41 SMIM19 ASCC2 UGT2B17 AMT FOXJ2 LYSMD2 LOC100419583 ROR1-AS1 LOC101928068 ATOX1 TSPAN17 KLF9 LOC105372751 CLEC2B MYO1A TST ZNF738 MAB21L3 P4HB PABPC1L SLC25A10 CBLL1 CEBPA SRC LINC00342 AMBRA1 TNFSF13B TPRN TRIM29 OPA1 TRIM26 CACNG4 BRI3BP KRT5 SP110 ACTN4 RSAD2 SLC51B MFSD10 SFRP5 PPP1R3D RRAGC IFI27 SLPI CD2BP2 MT1G GUF1 MT1H SIK2 SUCLG1 TRIM10 CALM2 MT1E MT1F IFITM3 ATP6V0D1 IFITM1 ADH1C LRP6 CISD3 AQP3 UBE2L6 C3ORF17 HERC6 STS HERC5 EXOSC6 HERC3 BAIAP2L2 ZNF827 SNRPD1 AAMDC SLC6A19 PAQR8 ARRDC4 LINC01087 COMMD3 ALG3 HLA-B CMBL OCEL1 HLA-F CYP27A1 FCHSD1 PLPP5 CRYZL1 GRWD1 NDUFAF3 TAGLN2 APOBEC3C CES2 FOXE1 MT1X IFIT1 GBA3 IFIT3 LGALS4 MRPL4 MT2A C7ORF50 SI KIAA0930 TREX1 TSPAN6 BLOC1S1-RDH5 ATP6V0A1 SOX6 PSENEN SEC13 TNFRSF12A KRT14 C10ORF99 KRT13 LSAMP AKR1A1 KLHL5 BST1 KRT19 ID1 KRT17 ID3 KLHL8 KRT15 ALDOB CALR MOGAT2 MAOA SDC4 GPAA1 KHK DSN1 MFSD4B CTSL DPH3 SMYD2 SMYD5 DPH7 CBR1 SORT1 SUSD1 SCD5 SUSD2 AKR1C3 ZDHHC12 SORBS2 APRT ANO1 BRMS1 NPDC1 DHRS11 MKI67 CRIP1 PEPD GUK1 POFUT1 DMBT1 TLDC2 SCAPER XDH MGAT3 PRLR OSR2 ALG14 SHISA5 BTNL3 MID1 ZIM2-AS1 IFI44L ZNFX1 ILVBL GPD1 UGDH-AS1 DNAJB11 FAM173A FAS SSU72 GSTA2 GSTA1 CDK2AP2 GOLT1A DPEP1 AMOTL2 PPIC STEAP3 XPR1 CD81 HAAO CIB2 IFI6 FUOM KRT6A CCND3 RAB40C CAPN5 MYH14 BANF1 EMC9 NDUFV1 C17ORF89 ARHGEF11 DENND2D DDX58 EPHX2 HMHA1 ISG15 TBCB USB1 DNAJC19 DIAPH1 HGS ALDH3A1 MATN2 NABP2 ACBD4 CCDC124 TXN2 PXK PODXL2 DDX1 SLC2A2 JADE2 KLHL13 ESPN FAM198B AKR7A3 UBD CHMP1A MAN2A1 ACAA1 HGSNAT ABCC2 TTC14 RHBDD2 SLC52A3 RHBDD1 ABHD14B URB1 EPN1 TAPBP COQ4 TMEM212 BMP3 CLCN5 OAS2 BMP1 CPS1 ACOX2 AKT1S1 SGK223 IRF8 MYH9 NDUFS3 IRF9 PLEC GSK3B ESRG B4GALT2 SLC3A2 MT-TL2 CHD4 AGPAT2 CASP9 CA1 DPP9 C9ORF16 GGACT MIR205HG KDM6B SGTA HSH2D ALDH1A1 PPDPF KANSL3 ABHD17A CPTP TAF6 RBM47 DCTN2 THRA MVP DCTN4 OASL SLC4A7 PDSS2
Down-regulated by SARS-CoV-2 in intestinal organoids 60hr differentiation from GSE149312 B3GALNT2 DEK UPF3A C12ORF75 NECAP1 RUFY1 NISCH SCD CYP2C9 ZC3H11A MTHFD1 TBPL1 HSPA1A NCBP2-AS2 CDA SAMD8 MT-ND5 XYLT1 SERPINE2 PARN RNF7 SLC5A3 MT-ND3 ABAT MT-ND4 UACA MT-ND1 SNX30 GPATCH8 GPR153 PSMD9 PRPSAP1 EPB41L4A-AS1 MXI1 TMEM69 STOM HOXA3 RPL14 CEP95 CHST14 WLS ST3GAL1 RPL18 PKNOX1 ABCA2 ZNF19 PLK1 VPS13D MARS2 KLF10 DNTTIP2 FAM136A THAP10 FA2H FERMT1 MRPL10 SLC6A8 GJB4 TCN1 HOXB5 HOXB4 MT-CO3 H2AFY2 GNE UNC119B CDCA4 DQX1 BCL10 GATA6 MRPL16 SMC2 STMN1 NYNRIN PROM1 GSTM3 CROCCP2 TET3 EMP2 TMEM43 LYZ CENPE LYRM2 CENPF BHLHE40 FXYD3 C4ORF3 ADGRL1 PAM TINAGL1 FAXDC2 CHM ABHD2 MRPL39 RASAL1 SLC7A1 TAF5L LDHA RHPN2 TIMP2 TEAD1 ZNF223 EGLN1 EGLN3 NDE1 KTN1 RNASE4 F3 FAM213B MZT1 RNASE1 LOC105377924 DHRS9 CLIP1 FABP6 LPCAT4 MPLKIP MYRF SLC29A1 WDR45B XXYLT1 ERO1A SETD9 SPIN4 STON2 AFP ING1 CLINT1 TMEM143 PIGZ PRSS22 LOC101927391 GCNT3 OBFC1 STRA13 ANKRD50 ENOPH1 SLC17A5 GSN SEMA4B SLC16A1 CD164 PHLDA1 GK ANKRD26 SSUH2 SPICE1 INIP ATP11A HINFP ACAP2 PSAT1 S100A4 TNIK RNF186 MAD2L1 PLOD2 RBMXL1 BZW1 PPP1CC GGA3 IYD KIAA0753 SC5D SPOP SLC39A4 SLC38A2 BNIP3L C11ORF84 C3ORF62 HPS5 TNFRSF10D C1ORF43 MAFF CACNB3 R3HCC1L PFKFB3 RAB3D CEMIP ZNF770 RAB3B COL17A1 LOC101929128 KMT2B NAB1 INSIG2 FAM13A KMT2D INSIG1 AK4 MYOM3 NPEPPS C6ORF223 ABHD12 ANKRD10 BRIX1 PIM3 SRGAP1 CLCA4 ZNF641 GPX3 LANCL2 ITGA2 RPL13A PTPN11 MSL1 MARCH3 IMPAD1 CPD ECHDC2 CDK2 CDK1 DSG2 ITGA6 TOP1 MMACHC MCM2 NUMB SERINC5 SOS1 MT-CYB GTF2A1 RETNLB FAM114A1 UBR5 FAM109B APIP FBXO45 MLLT6 SAV1 DUSP11 NAE1 SERAC1 BCAS1 MDN1 SMIM13 MARCKSL1 PATL1 COL27A1 OXR1 SEC22A PLEKHG3 UNC5B LRRC8A FEM1C ATRX CABLES2 BOLA1 ASPM PKM EHBP1 SYT13 APOC3 ASPH ANG LINC01559 FXN GAPDH MAK16 ZMYND8 CEBPD TRIM31 HDAC2 FHL2 KIAA0101 LOC644794 CNNM1 PPP1R13L SIN3B ITGAV NCK1 TMEM170A SMARCA1 ARL14 SLC12A2 TM4SF4 CIDEC AP1AR JMJD8 MIS18A TMCC1 ZNF717 CCDC86 KIF20B KYAT3 EPHA2 STX1A LINC01057 SATB1 CCDC68 UMAD1 SLC35B2 GORAB NDNF MST1R MRM2 OLMALINC SEPHS1 ELMSAN1 TGOLN2 APBB3 CCNL2 FER1L4 SNHG1 RABGAP1L TNFSF15 SLC11A2 XRCC4 SNHG8 HLA-G SRPK1 TOPORS ACER2 TPX2 MYO5C ITM2A GRB7 KRT42P TMPO SYNPR PTDSS1 REG4 HIVEP1 FFAR4 TP53BP2 AGFG1 TNS4 CDR2 SPA17 BBS2 SLC10A2 TSC22D1 NME4 KLK10 LHFPL2 KLK11 MRPS6 VEGFA PTMA P4HA1 NMU CEACAM7 CEACAM6 CEACAM5 TFF3 TFF2 TFF1 ALDOC CD24 SLC44A4 HILPDA PTPRR KLK6 PCSK9 BRCA1 NEDD9 CTSV KLK7 DUOX2 COIL AUH PPRC1 GSE1 TNFAIP8L1 LYAR MPZL2 TM4SF20 PARP3 MCCC2 XIAP ESYT2 TRIP10 DIRAS2 AMIGO2 NUBP1 MIA3 ZDHHC8 MT-ATP6 PCM1 EP300 DLAT TLDC1 RAB8B CD55 GDF15 UBE2C UNC5CL TRPV3 HCG8 TMEM131 ATP1B1 AP5B1 GRHL1 MZF1 DKC1 UCA1 DEGS1 BRWD3 UBE2M UBE2N PCNA PNCK ARHGAP39 ARHGAP35 TMEM123 TAF1D COTL1 PCNT AASDHPPT SLC30A7 TGIF1 MUC17 AUTS2 NUP153 ADPRHL1 SYT8 AZIN1 ARHGAP12 CAPRIN1 EFNA1 CREB1 ADGRF1 EFNA3 UBA2 TAB3 NMUR2 GEMIN8 TCF3 FGFR4 OR2A4 UBIAD1 PDS5B PDS5A CCNB1 CHMP1B ZC3H18 USP53 CHAMP1 ARFGEF2 USP25 TIPARP TSFM USP21 ATP13A2 SEPT6 HPDL DNM2 TGFBR3 BMP4 ELF2 RBL2 ASAH2B FAM60A IDI1 USP37 PMF1 DDX3X C2ORF42 DDX47 USP34 ZNF337-AS1 CXCL1 HSPB1 U2AF1L4 HK2 CALB2 BCL7B MCF2L MYEOV C17ORF100 ECT2 CA9 RBM14 TCFL5 TMEM30A HSDL2 DAPK1 RRM1 GLRX3 ANXA10 TBX19 THAP5 MLPH DDIT4 FAM131B DENND6A SPRY2 TRIB2 TRIB3 KDM3A TMEM41B ZNF292 LAMA1 CRYZ PRRG4 NT5DC2 SENP5 HPF1 CLMN VSIG1 NPTN
Up-regulated by SARS-CoV-2 in intestinal organoids 60hr expension from GSE149312 B3GALNT1 TEX30 MX1 PCGF6 MX2 HUS1 WDR75 CD3EAP DKK1 HSPE1 SCAMP3 HNRNPM NUP93 LYRM4-AS1 ARMC5 RBP2 TMEM126B ZSCAN25 POLR3K SF3B4 SAMD9 HERC2P2 NOLC1 EWSR1 C4BPB MT-ND1 SLC5A6 MT-ND2 SPDEF RRN3P1 LSM10 MUC2 MTA2 PSMD1 RRP36 EPSTI1 PLK4 PROSER1 PLK2 FAM136A SLC16A14 ACE2 PLSCR1 JTB LYPD6B PLBD1 PSME2 PPT1 HOXB4 PSME3 SFXN2 EZH2 PTP4A1 ATF5 XKR6 LXN DANCR C5ORF28 ADH6 ADH4 MRPL20 PTPMT1 ALKBH2 FIGNL1 NKX3-1 ADNP2 GSTM4 TCF19 PNPT1 ANXA5 SSR3 TIMM23 CDC6 GPRC5A C16ORF62 SLC7A9 ADI1 GAS7 SNORA63 YTHDC2 CLTB TIMM10 C12ORF45 MRPL40 UGT8 PANX1 TK1 PLLP RRS1 SERPINB5 MBNL3 UTP6 STAT1 ARG2 SLC2A11 GATB MANEAL SLC2A10 ELOVL7 SERPINB8 FAM201A MRPL47 GTF2H5 BAAT GUCA2A KIAA0196 FABP2 LOC105377924 FABP5 EBNA1BP2 MRPL52 KIAA1279 APEX2 AADAC LAMTOR1 NUCB2 HBEGF SFTA2 MRPL55 IFIH1 ARFRP1 TUBA1C TUBA1B TMSB4Y AGR2 GPAT3 PPIL1 C1ORF122 TAP2 MSH2 DCDC2 CXCL10 CXCL11 COPRS MELK HAT1 PSAT1 LY6E SNRPG SLC25A32 PDCD2 TCTA SNRNP25 COPS9 NHP2 POGLUT1 RNF34 ODC1 SRRT GPS2 SRSF1 GPS1 SRSF2 CLU LCLAT1 CXCL16 CTGF LAMP5 BCL2L12 LAMP3 NBN TPM1 CDC123 ATP9B HMGN2 STOX1 KPNA2 NOP14 TRAPPC4 SLC25A51 CYB561A3 B3GALT6 FTSJ3 PGD HOPX NDC80 TFDP1 C18ORF54 PGP XAF1 SP140L SLC27A4 TMEM19 DNMT1 SLC26A3 MAZ GMNN LOC100505938 TACSTD2 C1ORF56 FOXM1 CYP2C19 HSPBP1 CYP2C18 CHAF1B MPC1 THEM4 AP5S1 OIP5 SAC3D1 ZNF880 RFC5 EIF5A HSP90AA1 RFC3 EIF2AK2 GPX8 RN7SK ETF1 MCM6 DCTPP1 DNAJC9 PPP1R12C PSMG1 MTRF1L MCM3 AMD1 DSEL FUNDC1 ZNF746 DNAJB9 SLC36A1 UGT2B15 LYSMD2 EXOG LYSMD4 ATOX1 RAD51 NAGK LOC105370333 BOLA3 ANAPC5 DTL SPAG1 SLC25A12 NOP56 CD101 MTCH2 DDX60L PPM1K ECE2 KIAA0101 FOXRED2 CDC45 EXO1 SGCB PHKG2 PCDH7 WDR7 POLR2G SEC11C DCAF13 TRIM22 POLR2L IDH3A DUT SLC35A4 SP110 IL1R2 RSAD2 ENTPD7 PLEKHA6 KRT8 SLC51B CCAR1 LAP3 ST7 IFI27 CD2BP2 MT1G CCDC82 MT1E MT1F SLC46A3 IFITM3 EI24 IFITM1 CISD2 TRANK1 CISD1 UBE2L6 EXOSC8 HERC6 HERC5 DHX34 CHAC1 EXOSC4 TIPIN ALG8 ALG5 SLC34A2 PAQR4 TANGO2 COMMD4 ALG2 C8ORF4 COMMD7 UCHL3 IFI44 PARP14 PARP12 ARC CNKSR1 MEP1B SNHG11 MYO5C DPCR1 SPRTN IL1RN DCUN1D5 LPAR2 IFI35 IFIT5 TXNDC15 IFIT2 IFIT1 IFIT3 MARC1 MT2A C7ORF50 ANPEP CYP4V2 SNHG20 REG4 CEP170B ZBED5 ATP6V0A2 EDN1 WARS SLC10A2 NMI C10ORF99 IL18 ZWINT MRPS7 NME1 RBM12B RAD51C KRT18 CRELD2 ALDOB AKR1B10 KBTBD8 CD24 SGK1 CLIC5 ZFAND2A MTTP SLC35F6 SUV39H1 C2CD4A YAE1D1 DPH2 ERI3 DPH3 SMYD5 CD36 CTSE SNX7 PRMT6 SDCBP2-AS1 METTL1 STARD3NL METTL4 ZDHHC14 ZDHHC17 PARP9 ALDH5A1 SPCS1 CMPK2 AUNIP OR7E14P CD47 VMP1 FKBP11 FEN1 GFM1 INVS ZDHHC6 MRPS33 PEPD SPTLC3 XPO4 XPO6 HRAS CCT5 RARRES1 SPINK4 LOXL1-AS1 GINS1 SCARA3 RPGRIP1L GRHL3 DPM2 GLTPD2 IFI44L ZNFX1 DOK3 BOP1 TMX4 DKC1 TMEM138 POLE2 DNAJB11 DNAJB12 PPIF HRASLS5 TBC1D24 FAIM STEAP1 PCNA ZWILCH BCCIP IFI6 SAMD9L NOL6 RAE1 KRT6B CADPS2 C17ORF89 PHGR1 DDX58 HGD UTP11 CCDC137 KIF24 ISG15 RNASEH1 QDPR ADGRF1 DNAJC10 PRPF3 SRPRB NABP2 NMUR2 USP42 LINC00941 TRIAP1 TTF2 NR4A1 TMEM220 ZNF252P DDX60 EME1 CLSPN RGS2 MLKL COX11 CYP2J2 HGSNAT HSPA8 NCBP1 OAS1 NFKBIB OAS2 OAS3 ARL2BP RFT1 IRF9 CFAP36 NOP2 HMGB3 SLC3A2 CXCL2 ADAR CXCL3 EMG1 CA2 MKNK1 MARVELD2 MFSD1 LONRF2 FAM83D RBM14 TIMM8B RRM2 H2AFZ DCXR ANXA13 GLRX2 ANXA10 HSH2D PALLD ALDH1A1 C19ORF66 PLA2G10 ACKR4 TCEANC2 ABCE1 OTUB2 USP13 RABEPK PKD2 OASL OXCT1 MAT2A SEC61A1 POLD3 NOS2 NIFK
Down-regulated by SARS-CoV-2 in intestinal organoids 60hr expension from GSE149312 CDK19 FNBP1 HSPA1L GLCE HPCAL1 PRKAB2 MEX3A CAPN12 SCD SPINT2 XPNPEP2 SPINT1 TNFSF9 RBCK1 LETMD1 CDA ZNF395 AHNAK ASCL2 SLC5A3 SSFA2 TOB1 MUC1 EPB41L4A-AS1 PRAP1 GTPBP1 KCNQ1OT1 BBX MXI1 TP53INP2 S100A14 PRSS8 HOXA5 ABCA2 KLF11 PMM1 PHKA2 ELL2 SLC6A6 SLC6A8 WDR60 TCN2 LOC100131257 KDM7A GABARAP WDR48 HHLA2 TFRC BAZ2A PDGFB BAZ2B ENO2 TMEM91 TMEM92 DEDD2 RBPJ TMEM94 GUCD1 KIAA1109 NYNRIN CEP72 ZBTB7B ANKIB1 GSTM3 COLCA2 TPI1 GSDMA IL10RB TET2 TMEM171 TMC4 GPRC5C SLCO4A1 FXYD5 BHLHE40 FXYD3 C4ORF3 ITPKB PAM MYZAP REN SERPINA1 TINAGL1 BTG1 LOC101927009 ADM ADIPOR2 CCDC18-AS1 EPCAM LDHA C16ORF58 EGLN3 PPARA DGAT2 PLIN1 IFNGR2 G0S2 RNASE4 FMO5 DHRS3 FAM213A TMEM59 RYBP RNF128 SMOC2 TAOK3 PELI2 ANGPTL4 PPARG ZNF217 PLIN2 GPR146 PPARD PHF3 MTMR11 WDR45B CDKN1C GRN ERO1A MT-TV CDKN1A PIGR QPRT SPIN4 AOAH TMEM141 SMPD3 FCGRT ADRBK2 TCTN3 ADRBK1 PWWP2A AP3S1 GPA33 TMEM38A GSN SEMA4B CD164 PHLDA1 MAP3K2 AOC1 PNRC1 NEAT1 OLFM2 S100A4 ADAM8 RNF186 CRAT SLC25A36 MIR210HG SLC27A1 ANKRD37 DGKA UCP2 PLOD2 C1ORF115 FRY SH3BP2 SC5D FLNB MACROD1 PAXIP1-AS1 ACSS2 SLC16A3 SLC16A4 ATP9A KCMF1 SLC39A4 C1QL1 SLC38A2 PNISR IGFBP4 BNIP3L TMEM120A IGFBP3 EEF2 PIAS1 FOXN3 MLXIPL TRAF6 LCN2 MALAT1 PFKFB3 RAB3B PFKFB4 CALCOCO1 COL17A1 INSIG2 CLSTN1 FAM13A ANKRD12 INSIG1 AK3 AK4 SAT1 NPEPPS ARHGAP5 PLXNA3 PIM1 PIM3 ZKSCAN1 GPX3 GFPT1 GPX4 TMEM255B MSL1 IMPAD1 BCL6 DSG2 SERINC2 LCOR ITGA6 AHDC1 PRR36 EIF4B GAL3ST1 RETNLB ZC3H6 FAM114A1 PTPN22 CYP3A5 SAV1 C15ORF48 PSAP P2RY2 PGK1 WASF2 PGPEP1 AMN DSP SPAG4 ATRX KHNYN SORL1 LEMD1 P2RX4 TXNIP LINC01559 SMPDL3A SMIM24 PFKP ZMYND8 EIF4A2 MSLN FURIN PSCA ITGB4 FHL2 DNHD1 CXXC5 PBXIP1 CNNM2 ZNF609 ZNF608 IGF2BP2 SLC25A23 SLC35A3 SMARCA1 IFITM10 PLEKHA1 ACTN1 UNC93A ACSL5 MAPK8IP3 SFRP5 SST TMCC1 SUCLG2 GSAP APP WBP2 CCNI LRP1 NDNF LRP4 PPP1R3B AQP1 OLMALINC HERC3 TGOLN2 FAM63B FER1L4 INSR PAQR5 ARRDC3 SLC11A2 ARRDC4 SNHG7 HLA-A PTK6 HSPA12A IL17RE HLA-G ALOX15B VAT1 CYP2S1 CCNY ITM2C GRB7 CREBRF GCC2 C14ORF93 GOLGA4 SOX4 SYNPR LGALS1 RASSF7 HIVEP3 KCNN4 PDK1 PDK3 PDK2 APOBEC1 EDN2 TSC22D1 TSC22D3 KRT12 ZHX1 MRPS6 VEGFA PDZK1IP1 PTPRE PTPRF TOX3 CEACAM1 TPPP3 P4HA1 P4HA2 CLDN15 CEACAM7 CCNG2 CEACAM5 TFF3 ARHGEF2 TFF2 TFF1 ALDOC ALDOA LOC105375166 C17ORF78 CSRNP2 DDR1 HILPDA KLK1 PTPRR MOGAT2 AATK CSDE1 STC2 VLDLR SBNO1 DUOX2 ANKRD9 ZMYM2 UGCG SLC22A18 SH3PXD2A STK38 RRAS QSOX1 NFIL3 CLIC3 PCK1 MPZL2 PAG1 MPZL3 UBXN6 TMEM176A TMEM176B GAA ANO9 NBR1 MT-RNR2 CD46 DBN1 ECM1 GDI1 DIRAS2 GBE1 FAIM2 RSF1 FCGBP SERTAD2 CXCR4 FAM3B LOC100506548 HLA-F-AS1 CA11 DENND4C RSBN1 KLHL24 LIFR MID2 TMEM256 ARHGAP32 AXL COL5A3 YPEL2 CHMP4B UCA1 BRWD3 CD68 YPEL5 YPEL3 CCDC146 PNCK SCNN1A ARID4A NDRG1 TMEM123 RAB40C ASAP1 GAS2L3 CAST SREBF2 MUC17 RAP1GAP2 GATA6-AS1 SYT7 EFNA2 EFNA1 MXD1 NPSR1-AS1 COL6A1 MKRN1 UBE2R2 CDHR5 DNAL1 MUC20 KIAA1191 DOCK6 NARF SLC2A1 LPP ESPN LTBP4 ETS2 FAM174A CAMTA2 USP53 SBF2 ANKZF1 ZFHX2 KDM4B LAMB3 SMURF1 NAV1 DNM2 TAPBP CLK3 CLK1 ELF3 BMP2 RASA4 IRF2 MYH9 ALDH18A1 LOC554223 SHANK2 KDM5B KDM5C SMIM3 ESRG SLC40A1 CHD2 HSPB1 HK2 DBP ERICH2 MKNK2 ERBB3 PDE4C FAM83A CA9 CCDC186 HIST1H1C IGBP1 TCF7L2 SNTB1 TRAPPC6A DDIT4 DDIT3 TRIB3 DNAH1 HIST1H2BD KDM3A RERE PALM3 ZNF292 PPP2R2A MSMO1 KANSL1 ADD3 SENP7 CLMN PCED1B GNA13 MAPK3 BNIP3 POLH
Up-regulated by SARS-CoV-1 in intestinal organoids 24hr from GSE149312 HUS1 ZNF271P BTBD10 DKK1 HNRNPM HNRNPK PSMC4 CD9 FDX1 PSMC3 ETHE1 GPD1L HSPA1A PSMC1 MYL9 FSIP2 MT-TM PLCD3 HSPA1B SF3B4 SGMS2 HPGD RALA ARPC5L EWSR1 GHITM C4BPB ABRACL CLDN1 MT-ND1 MT-ND2 PSMD9 SPDEF MUC2 FLRT3 PSMD6 PSMD3 TGS1 PSMD1 RRP36 S100A16 S100A10 KLF13 TNNC1 EPT1 PLK2 DNTTIP2 EXOC6B ABTB2 SULT2B1 FOSL1 GJB3 SLC6A9 PLSCR1 PKIB PLBD1 PSME3 SSPN CRYAB TMEM9B PADI2 PTP4A1 PID1 LXN CDC42SE1 LYPD3 MRPL20 EPB41L5 PLAC8 LIPH IER2 HMOX2 PIP5K1B AGMO PNO1 FGFBP1 NSUN2 ANXA1 DUSP4 ANXA2 ANXA3 DUSP1 ANXA4 JUP MYOF EMP1 TIMM23 GPRC5A GIPC1 C16ORF62 ADI1 TRMT6 PET117 GRAMD1B ZNF593 ABHD5 ABHD3 CLTB LRRC1 TIMM10 AREG TMEM164 KIAA0040 HSD11B2 CSRP1 RHPN2 FLVCR2 RSU1 PLLP SERPINB5 ARG2 SERPINB8 F3 RABIF MRPL47 SERPINB6 BAAT GUCA2A KIAA0196 FABP2 TOM1L2 LOC105377924 FABP5 PSMA3 KIAA1279 AGPS FOSB AADAC LAMTOR1 HBEGF LGR4 CCL15 LAD1 SFTA2 TMEM54 FSTL3 TMSB4X PSMB5 TUBA1C SULT1E1 MPRIP GCNT3 MIR22HG METTL7B AGR2 GPAT3 TMEM14A ZNF561 CORO2A C1ORF122 TAP2 LRRC66 MOB3B RAB32 RAB35 PKP2 SLC25A32 TCTA SNRNP25 COPS9 DSC2 NIP7 ODC1 PPP1R15A GPS1 CLU ARMCX1 CXCL16 CTGF C1ORF106 ICT1 TPM1 ASCC3 SLC25A46 MISP PHLDA2 SLC16A5 ATP9B MB21D2 TRAPPC3 NOP16 FTSJ1 MED27 SLC9A3R1 FRMD3 HOPX MYD88 TRAF4 PGP SLC27A4 FTL LRRC59 SLC26A3 MAX TPMT FBXO28 TACSTD2 CORO1B CYP2C19 HSPBP1 CYP2C18 NHSL1 MMP28 MPC1 BAG1 REXO2 TXNRD1 BICC1 TMBIM1 MARCH3 DNAJC3 TNFRSF21 RN7SK ESRP2 AAK1 DNAJC9 MTRF1L GTF2A2 UFD1L SNAP23 NDUFB3 C15ORF41 DUSP14 DSEL UBR7 CAPZB PHACTR2 SERAC1 BCAS1 SMIM15 UGT2B15 CHUK DNAJA1 NAGK RAB10 SPAG1 RAB18 PLEKHG1 BLZF1 NECTIN2 CEBPA PRR5L SQRDL LOC105369340 SLC25A20 POLR2G ATP7B UPP1 SEC11C POLR2L IDH3A CCDC51 C3ORF38 ACTN4 ENTPD5 IL1R2 ARL14 ENTPD7 KRT8 KRT7 CTNS EREG MALL LACTB2 SLPI MT1G TMCC3 WTH3DI EPHA2 CALM2 MT1E EPAS1 AHCYL2 ATP6V0D1 TAGLN VIPR1 SLC35B1 MRM2 MYL12B ACTB STRIP2 NIPAL1 C10ORF54 CHAC1 DENR EGR1 GADD45B SLC34A2 XRCC4 RAB27B COMMD2 ALG2 C8ORF4 OVOL2 COMMD7 WFDC21P EXT1 OCLN ARC CNKSR1 BANK1 MYO5C DPCR1 PLPP1 IL1RN SLC35D1 MGST3 PPL GSKIP NLN LGALS4 LGALS3 MICAL2 MIER3 TSPAN8 REG4 CEP170B EDN1 TNFRSF12A NMI C10ORF99 KLHL5 IL18 RHOD KLK10 NME1 RHOB PRPF18 RAP2B KRT19 KITLG ID1 KRT18 KRT17 ID3 ID2 ID4 CRELD2 AKR1B10 ACTR10 CD24 SGK1 GUCY2C LINC01133 CLIC5 FOXC1 DHX9 ZFAND2A SLC35F6 KRT23 KRT20 KALRN SOCS3 YAE1D1 CTSL PRKCDBP CTSE CLIC1 SNX7 NQO1 IL33 AKR1C2 AKR1C1 ORMDL2 AKR1C3 ANO1 MT-RNR1 F2RL1 OR7E14P MAPRE3 FOXA1 GFM1 SLC20A2 ZDHHC6 GDPD3 SLC20A1 PTS CLDN23 SPTLC3 CAMK2N1 SERTAD1 HRAS LCMT2 MFSD2A CD55 CA13 HS3ST1 LMO4 GRHL3 BAMBI DNAJB11 FAS CDK2AP1 AMOTL2 PPIC ABCG2 FAIM LOC102724094 LOXL4 BCCIP EFNB2 RASD1 CAPN1 KRT6B PHGR1 NABP1 NAT1 GEM QDPR ADGRF1 NAT2 TRNP1 PRPF3 NMUR2 USP42 MICU2 GCLM SELT VCL SRP19 VCP WWC1 SH3KBP1 ACTG1 SLC41A2 NR4A1 HIGD1A RGS2 ADGRG6 ALDH3B1 MUC13 ACAA1 HGSNAT HSPA6 MMP1 CBX4 HSPA8 OAS1 ATP5F1 EPN3 NFKBIB ELF4 SFPQ ARL2BP FAM96B CYCS ATG4A VIMP CXCL8 MCUR1 USP38 DDX47 PSMD14 MT-TL1 TNFAIP1 LAMC2 CXCL1 CXCL3 DPP3 FUT4 NT5C2 EMG1 CA2 CA1 IRAK2 MFSD1 TIMM8B RWDD4 NAA10 ANXA13 ANXA11 GLRX2 GLRX3 ANXA10 ATP2B1 YWHAZ TBC1D2 CLDN4 LTBR PALLD ALDH1A1 C19ORF66 AIM1 INAFM2 ALDH1A3 S100P ACKR4 SSBP1 CLOCK RBM45 KRT80 THBS1 SLC22A18AS RND3 CHCHD3 RBM3 MAT2A ABHD16A TDG NIFK
Down-regulated by SARS-CoV-1 in intestinal organoids 24hr from GSE149312 CDK19 HSPA1L GLCE HPCAL1 SOX12 SLC50A1 PRKAB2 GATAD2B MEX3A CAPN12 SCD RFX7 ORAI3 LETMD1 CDA ZNF395 SLC5A1 ASCL2 SLC5A3 GPATCH8 GPR153 MUC1 DPYSL2 EPB41L4A-AS1 PRAP1 KIAA1324 KCNQ1OT1 GMDS BBX MXI1 CREB3L3 PRSS8 HES6 ZNF267 KLF11 PRKCG PMM1 PHKA2 PRRC2B SLC6A6 ZSCAN16-AS1 SLC6A8 WDR60 TCN2 HOXB8 LOC100131257 UNC119B WDR48 HHLA2 TFRC CDCA7 PDGFB GNS TMEM97 ENO2 SMC4 HIF1A TMEM92 RBPJ TMEM94 NYNRIN KCNMB4 PROM1 LOC729348 FUCA1 GSTM3 COLCA2 TPI1 GSDMA TMEM171 LYZ TMC4 CENPE CENPF CENPH SLCO4A1 FXYD5 BHLHE40 C4ORF3 PIGL PCYOX1L REN PAFAH1B3 DENND1C SERPINA1 BTG2 GRAMD1A TINAGL1 BTG1 ADM CCDC18-AS1 ERMP1 LDHA LHPP ATXN1 PCMTD1 EGLN3 PPARA DGAT2 PLIN1 IFNGR2 WDR19 SNX25 RNASE4 DHRS3 FARP1 RNASE1 FABP6 SLC39A10 SMOC2 SMOC1 PELI2 ANGPTL4 PLIN2 LGR5 PHLPP1 CDKN1B WDR45B CDKN1C GRN ERO1A MT-TV PIGR QPRT AOAH FGFRL1 TMEM143 PIGZ LMAN1 FCGRT ADRBK2 ADRBK1 TMEM38A GSN ANKRD26 GPT2 PNRC1 NEAT1 OLFM2 OLFM4 PDCD4 ADAM8 DHCR7 RNF186 CRAT SLC25A36 MIR210HG GOLGA8A NFIX SLC27A1 ROCK1 ANKRD37 UCP2 PLOD2 C1ORF115 FRY FAM117B SH3BP4 RBBP4 CEP250 SC5D PAXIP1-AS1 C11ORF68 SLC16A3 ATP9A SLC39A4 SLC15A1 SLC38A2 SEMA6A PNISR IGFBP4 BNIP3L IGFBP3 KIAA0430 FOXN3 PIAS3 TRAF5 REEP6 MLXIPL LCN2 MALAT1 INO80D PFKFB3 CEMIP PFKFB4 CALCOCO1 COL17A1 KMT2A INSIG2 FAM13A RTKN2 ANKRD12 BOD1L1 PHF21A SLC38A11 AK4 RLF SAT1 C6ORF223 PLXNA3 ZKSCAN1 SYBU AHSA2 MSL2 DBNDD1 BCL6 CPD ZNF511 MCM2 TNRC6B NFAT5 GAL3ST1 ZC3H6 ITPR2 FHIT CYP3A5 C15ORF48 CRHR1-IT1 METTL15 HMBOX1 PSAP TKFC PGK1 CEP295 CEP290 PGPEP1 C8ORF58 RNF24 SPAG4 ATRX KHNYN HAUS4 HAUS6 TM6SF2 SORL1 LEMD1 ASPM LCK PFKL SYT13 P2RX4 MAB21L3 TXNIP ANG LINC01559 SMPDL3A BDP1 GAPDH SMIM24 PFKP ZMYND8 EIF4A2 MSLN ZBTB44 PBXIP1 SYNE2 POLR2A EPHB3 PGM1 PTPRN2 SMARCA1 ECH1 SLC12A2 CIDEC UNC93A ACSL5 SLC51A PML SFRP5 ST5 HIST1H4C TMCC1 PPP1R3E ULK1 GSAP AHCYL1 APP STXBP1 ZAK CCNI LRP1 PLEKHB1 AKAP9 NDNF LRP4 AQP5 IL2RG OLMALINC CYP4X1 B2M SRGAP2B C9ORF152 ARRDC3 SLC11A2 SNHG7 HLA-A HSPA12A HLA-B HLA-G VNN1 PPP1R1B PIK3R1 ADCK3 CYP2S1 GOLGB1 MEP1A CCSER2 GRB7 HDAC11 ECI2 CREBRF GDE1 TMTC2 C14ORF93 INPP5D GOLGA4 SOX4 SYNPR NUDCD3 LGALS1 MARC2 SOX9 TNFSF10 HIVEP3 KCNN4 PDK1 PDK3 PDK2 APOBEC1 EDN2 TSC22D1 TSC22D3 NME4 VEGFA PDZK1IP1 RGMB VEGFB PTMA ALDH6A1 CEACAM1 TPPP3 P4HA1 FAM193A P4HA2 CLDN15 CEACAM7 TFF3 VWA2 TFF2 TFF1 ALDOC ALDOA C17ORF78 TNFRSF11A HILPDA KLK1 PTPRR MOGAT2 KIF14 STC2 VLDLR DUOX2 FXR1 ZMYM3 MLEC QSOX1 TNFAIP8L1 KIF1B NFIL3 CLIC3 PCK1 MPZL2 ASIC1 PAG1 MPZL3 MPP3 PALD1 TMEM176A TMEM176B ANO9 THOC2 SORBS1 PACS1 MLH3 NR6A1 KCNQ1 NBR1 SIPA1 DBN1 FOXA2 ECM1 GBE1 FAIM2 PTMS FCGBP AKAP11 CXCR4 MGAT5 LOC100506548 CA11 CD74 CRTAP ZFC3H1 KLHL24 HCG8 AXL DOK7 TGFBI BRWD3 YPEL5 GRINA IVNS1ABP YPEL3 CCDC146 PNCK ZFP36L1 NRM PCAT6 KIAA2026 LOC113230 NDRG1 GALNT10 TMEM123 TMEM245 ASAP1 GAS2L3 ARHGEF40 KIF22 RAP1GAP2 SYT7 EFNA1 EFNA3 NPSR1-AS1 COL6A1 MKRN1 CDHR5 DNAL1 FGFR4 FGFR2 KIAA1191 ISYNA1 SLC2A1 LGALS3BP ESPN SEZ6L2 PPP1R9B ETS2 IGF1R TMEM107 CAMTA2 USP53 SBF2 ANKZF1 ZNF385A BCKDHA SUN2 USP28 DNM2 TAPBP CLK3 CLK1 RASA1 ELF2 RASA4 ALDH18A1 MAN2B1 LUC7L3 FAM60A SMIM3 ESRG MOSPD3 SLC40A1 HK2 DBP CALB2 MKNK2 CA9 ATF7IP ATP2B4 LOC284023 HSD11B1L SNTB1 PIK3IP1 DDIT4 FAM131B TRIB2 TRIB3 HIST1H2BD DHTKD1 KDM3A PALM3 ZNF292 CCDC28A EHMT2 YBX2 KANSL1 CLMN RPS6KA2 BNIP3 COLGALT2
Up-regulated by SARS-CoV-1 in intestinal organoids 60hr from GSE149312 NGDN HUS1 ZNF271P CD3EAP DKK1 C9ORF40 HNRNPM NUP93 SEPT7P2 PSMC4 PSMC3 RBP2 MTHFD1 TMEM126B MT-TI ACOT7 FSIP2 MT-TM C2ORF88 SF3B4 HPGD NOLC1 C14ORF142 C4BPB GPATCH4 CLDN1 MT-ND1 SLC5A6 MT-ND2 PSMD9 SPDEF NXF1 MUC2 CLP1 PSMD1 TYW1 PSMD2 MUC6 PROSER1 PMM2 EDEM3 PLK2 EXOC6B FAM136A ACE2 FAM111B FAM111A PLSCR1 LYPD6B PLBD1 PPT1 HYOU1 SFXN2 SSPN PTP4A1 ATF5 PID1 IPO13 DANCR CDCA5 MRPL19 WDR43 TAPBPL TMEM98 ADH6 ADH4 MRPL20 GLE1 NETO2 ALKBH2 ADNP2 PNO1 TIMM17A MYBL1 ZNF124 CENPU GSTM4 TCF19 TRMT10C RING1 SSR3 TMCO1 PRSS16 TIMM23 ZNF35 GPRC5A C16ORF62 SLC7A9 ADI1 TRMT6 CENPM ABHD5 YTHDC2 CLTB ENDOD1 TIMM10 IQGAP3 C12ORF45 CSRP1 TK1 FLVCR2 PLLP CEP55 SERPINB5 HELLS TIMMDC1 MBNL3 UTP6 ARG2 DGAT1 MOCOS ELOVL7 AGMAT MRPL47 FAM104B BAAT GUCA2A KIAA0196 LOC105377924 FABP5 EBNA1BP2 FABP6 SDHAF3 KIAA1279 AGPS LAMTOR1 NUCB2 ZNF215 LRRC14 SFTA2 ARFRP1 TUBA1C TUBA1B TMSB4Y SMPD1 MIR22HG RRP15 METTL7B AGR2 GPAT3 SLC17A4 LINC00852 PPIL1 CYBRD1 C1ORF122 MSH2 HNRNPAB DCDC2 MOB3B HAT1 PSAT1 SRSF6 TCTA SNRNP25 COPS9 FKBP4 NHP2 POGLUT1 RNF34 RNASEH2C ODC1 GPS2 SRSF1 GPS1 SRSF2 LCLAT1 RBMXL1 NBN TPM1 USP1 ASCC3 ATP9B HMGN2 STOX1 CYB561A3 PGD FANCE HOPX NDC80 TFDP1 BIRC5 C18ORF54 TROAP PGP IARS SLC27A4 TMEM19 DNMT1 LRRC59 BLM GMNN LOC100505938 IPO4 CREM C1ORF56 FOXM1 CYP2C19 CYP2C18 IPO9 CHAF1B MPC1 THEM4 OIP5 TXNDC9 SRGAP3 EIF2B2 RFC5 REXO2 HSP90AA1 RFC3 GPX8 BICC1 TPCN2 GNL3L RN7SK MCM5 MCM6 DNAJC9 PSMG1 MCM3 GTF2A2 NDUFB9 GTF3C6 SNAP23 AMD1 C15ORF41 PTBP1 METTL13 ATP5B UBR7 DNAJB9 DGCR8 SMIM15 NOP58 SLC36A1 UGT2B15 CHUK AMT KATNA1 BPGM MYO19 ATOX1 CPPED1 DNAJA1 RAB12 NAGK SNRNP40 POLR1A POLR1B APOC3 ANAPC5 DTL SLC25A11 KCTD12 SPAG1 RAB18 NOP56 MTCH2 MCM8 HSP90AB1 KIAA0895L KIAA0101 SRM LOC644794 CDC45 EXO1 WDR7 SEC11C POLR2L IDH3A SLC35A4 IMP3 IMP4 IL1R2 ENTPD7 KRT8 CTNS SLC51B ITGB2-AS1 CRNKL1 CDC20 CCAR1 ST7 TTTY15 MT1G MT1E MT1F EIF5A2 SLC46A3 AHCYL2 ATP6V0D1 EI24 SLC35B1 HM13 TRANK1 CISD1 MRM2 EXOSC8 STRIP1 E2F1 E2F2 CHAC1 DENR TIPIN FKTN SLC6A19 PLA2G4F ALG5 XRCC4 PAQR4 ALG3 COMMD4 ALG2 COMMD7 AIMP2 BANK1 MEP1B MYO5C ADCK1 DPCR1 SPRTN NOL11 ITM2A IL1RN SLC35D1 HGH1 TEX261 NRARP TMPO MARC1 MT2A C7ORF50 ANPEP CYP4V2 MICAL2 REG4 KIF21A CEP170B ATP6V0A2 APOB SLC10A7 WARS SLC10A2 TUBB NCOA5 NMI C10ORF99 ZWINT NME1 RAD51C KITLG KRT18 NAT10 ALDOB AKR1B10 CALR CD24 SGK1 TMEM185B CLIC5 MAOB MTTP MAGEF1 SUV39H1 DPH2 CTSL GNPNAT1 UBXN8 SMYD5 CD36 UTP14A CTSE LYAR PRMT6 SORT1 STARD3NL METTL4 APRT PARP9 SPCS1 PRPF31 TRIP13 AUNIP FKBP11 FEN1 DHRS11 GFM1 PRIM2 ZDHHC6 GDPD3 MKI67 ZDHHC23 ARNTL2 SERTAD4 XPO4 TBC1D30 XPO6 SPTAN1 CD55 REV3L RARRES1 CA13 SPINK4 GINS1 PUS1 ZNF77 CNOT10 GRHL3 TMEM253 DPM2 GLTPD2 DKC1 GPD1 POLE2 DNAJB11 FIZ1 PPIF HRASLS5 RPP25 STEAP1 PCNA ZWILCH LOC100294145 NDUFB10 NOL6 TATDN2 TAF1B MSX2 RAE1 BORCS8 BORCS7 KRT6B PHGR1 DDX56 TBCB NR4A2 ADGRF1 DNAJC10 PRPF4 PRPF3 SRPRB GEMIN6 NMUR2 LOC101927503 SH3KBP1 TRIAP1 NR4A1 TMEM220 ZNF252P BRINP3 CLSPN RGS2 ALDH3B1 MLKL COX11 HGSNAT GALNT7 HSPA8 NCBP1 URB2 SENP1 SFPQ RFT1 NFKBID USP38 AVEN PYCRL PSMD14 NOP2 MAST3 MT-TL1 EMG1 CA2 BCL7C MFSD1 RBM14 TIMM8B RRM2 H2AFZ RRM1 NAA10 ANXA13 GLRX2 ANXA10 ATP2B1 ALDH1A1 PLA2G10 CTBP1-AS2 NUP35 CDIP1 ACKR4 USP14 DDX23 PKD2 IGFBPL1 OXCT1 SEC61A1 POLD3 TRA2B NOS2
Down-regulated by SARS-CoV-1 in intestinal organoids 60hr from GSE149312 CDK18 FNBP1 HSPA1L GLCE HPCAL1 SOX13 PRKAB2 MEX3A RUFY2 CAPN12 SCD SPINT2 SPINT1 LINC00887 CYP1A1 TNFSF9 RBCK1 LETMD1 CDA ZNF155 ZNF395 MT-ND6 XYLT1 ASCL2 SLC5A3 DCAF5 TOB1 GPR153 EPB41L4A-AS1 PRAP1 ZMIZ1 KCNQ1OT1 LURAP1L BBX MXI1 S100A14 PRSS8 GBP2 HES6 HOXA5 ABCA2 ABCA1 FZD5 PMM1 KLF10 MTHFR NR1D1 PHKA2 NR1D2 EIF1 SLC6A6 SQLE SLC6A8 LOC100131257 KDM7A PRR15 GABARAP WDR48 HHLA2 PDGFB ENO2 TMEM91 TMEM92 DEDD2 RBPJ TMEM94 GUCD1 NYNRIN FLJ23867 JUNB ZBTB7B LOC729348 IER3 COLCA2 GSDMA CCL20 PHF13 IL10RB NFATC4 TET2 TMEM171 LYZ TMC4 SLCO4A1 FXYD5 BHLHE40 FXYD3 C4ORF3 REL PAM REN DENND1C GABRB2 SERPINA1 TINAGL1 BTG1 ADM LITAF ADIPOR2 APOLD1 EPCAM LDHA ATXN1 PCMTD1 EGLN3 PPARA DGAT2 PLIN1 G0S2 KIAA2013 RNASE4 SERPINB9 FAM213A TMEM59 GID8 LINC00506 RNF128 SMOC2 PELI2 ANGPTL4 PPARG ZNF217 PLIN2 GPR146 SLC29A2 TKT ZNF213 WDR45B CDKN1C GRN C11ORF54 ERO1A MT-TV QPRT SPIN4 PHF1 AOAH TMEM141 ING1 LYST PRSS22 FCGRT ADRBK2 AP3S1 GPA33 TMEM38A RIOK3 GSN RNF43 SEMA4B CD164 PHLDA1 TLE2 RPS9 PNRC1 OLFM2 S100A4 ADAM8 RNF186 CRAT SLC25A36 MIR210HG NFIX SLC27A1 ANKRD37 UCP2 PLOD2 FRY SH3BP2 SH3BP1 CDH1 SC5D HAS3 ACSS2 SLC16A3 SLC16A4 ATP9A KCMF1 IGFBP2 C1QL1 SLC38A2 OSBPL7 IGFBP4 BNIP3L IGFBP3 TNFRSF10D FOXN3 MAFF REEP6 MLXIPL LCN2 MALAT1 PFKFB3 CEMIP RAB3B CALCOCO1 COL17A1 CLSTN3 INSIG2 FAM13A INSIG1 C1ORF210 SAT1 NPEPPS PLXNA3 PIM1 PIM3 ZKSCAN1 GFPT1 GPX4 TNFRSF1B TMBIM1 DBNDD1 NPC2 BCL6 DSG2 SERINC2 ITGA6 AHDC1 NFAT5 GAL3ST1 ZC3H6 FAM114A1 PTPN22 CYP3A5 SAV1 BLACAT1 C15ORF48 HMBOX1 PSAP PGK1 WASF2 LINC00675 C8ORF58 DSP OXR1 SPAG4 KHNYN TP53INP1 FBXL16 KLF4 LEMD1 KLF7 MYO1D P2RX4 TXNIP ZNF615 LINC01559 SMPDL3A PFKP ZMYND8 EIF4A2 TRIM31 ITGB4 FHL2 DNHD1 CXXC5 CNNM1 TRIM29 EPHB4 PTPRN2 SLC35A3 ENTPD2 SMARCA1 IFRD1 IFITM10 FBXO2 PLEKHA1 UNC93A ACSL5 TM4SF1 SST TMCC1 SRP14-AS1 ULK1 HECA GSAP APP CMAS CCNI LRP1 LRP4 OLMALINC HERC3 TGOLN2 ZNF703 FAM63B B2M RAB11FIP4 SRGAP2B SIAH1 INSR PAQR5 GADD45A ARRDC3 SLC11A2 ARRDC4 SNHG7 HLA-A PTK6 HSPA12A HLA-B HLA-G ALOX15B HLA-E CYP2S1 CCNY CCSER2 HDAC11 GDE1 MT1X TMTC2 INPP5D SOX4 SYNPR LGALS1 GOLGA2 TSPAN5 HIVEP3 KCNN4 PDK1 SOX7 PDK3 PDK2 APOBEC1 EDN2 TSC22D1 TNFRSF12A TSC22D3 MRPS6 VEGFA PDZK1IP1 RGMB PTPRF TOX3 CEACAM1 TPPP3 P4HA1 P4HA2 CEACAM7 CCNG2 CEACAM5 TFF3 TFF2 ALDOC ALDOA AARS GNRH1 LOC105375166 C17ORF78 TNFRSF11A HILPDA KLK1 PTPRR STC2 VLDLR ANKRD9 ZMYM2 UGCG SLC22A18 IDS RRAS QSOX1 NFIL3 CLIC3 PCK1 MPZL2 PAG1 MPZL3 MPP3 PALD1 TMEM176A TMEM176B PROX1 ANO9 KCNQ1 CLEC4GP1 NBR1 SIPA1 FOXA2 ECM1 CD63 AMIGO2 GBE1 FAIM2 FCGBP SERTAD2 CXCR4 FAM3B CA11 GDF15 DENND4C CDX2 KLHL24 LIFR UBE2B MID2 AIG1 FAM161B CHMP4C UCA1 CD68 YPEL5 YPEL3 CCDC146 PNCK ZFAND1 SCNN1A ZFP36L1 PCAT6 PRKX NDRG1 CMIP TMEM123 ASAP1 DUOXA2 ARHGEF40 SREBF2 USP49 MUC17 RAP1GAP2 ACSF3 SYT7 EFNA1 MXD1 NPSR1-AS1 COL6A1 DNAL1 TSNARE1 FGFR4 DOCK6 SLC2A1 ESPN TTF1 ETS2 CHAD USP53 SBF2 ANKZF1 LAMB3 SMURF1 IFNLR1 ARAP1 DNM2 TAPBP CLK1 RASA1 ELF3 BMP2 RASA4 IRF2 MYH9 IRF6 FAM60A TMEM45B KDM5B KDM5C SMIM3 ESRG RTN2 DDX3Y SLC40A1 HSPB1 HK2 DBP CALB2 SNAPC3 MKNK2 ERBB3 PDE4C CA9 CCDC186 DACT2 IGBP1 TCF7L2 LMTK3 LOC284023 SNTB1 CLDN4 PNKD TRAPPC6A DDIT4 LNX1 DDIT3 TRIB3 RSPH1 HIST1H2BD KDM3A PALM3 ZNF292 CCDC28A PPP2R2A MSMO1 ADD3 SENP7 CD27-AS1 CLMN PCED1B BNIP3 POLL
Genome-wide CRISPR screen reveals host genes that regulate SARS-CoV-2 infection SMAD3 SIAH1 SMAD4 ATRX SMARCE1 DOLK DYRK1A ARID1A PIAS1 SMARCA4 JMJD6 SMARCA5 PIAS2 ACE2 TMX3 RAD54L2 PHIP CABIN1 PHF6 ACVR1B HIRA SH3YL1 CTSL DPF2 PCBD1 KDM6A UBXN7
Up-regulated by cystine and theanine in IAV-infected mouse spleen DEK GTPBP2 ATG12 COL1A1 PSMC6 NECAP2 CCS HMBS PSMC2 VOPP1 PSMC3 ASF1A IGTP CDK16 SCT ATF1 NCAPH EWSR1 GHITM ARAF PPOX MTA2 MYB CLP1 NUP85 MXI1 PSMD4 CAPNS1 ST3GAL5 STOM RALY SNCA FDFT1 ST3GAL4 ELANE CNOT6L NFE2 PLK4 STARD10 KLF10 DNTTIP2 EIF1 COPZ1 FAM220A 1700037H04RIK VAMP8 WDR61 SFXN1 PSME4 PSME3 SIVA1 VAMP5 PRR13 EZH2 ATF4 VAMP4 NMT1 OGDH CDCA4 TFRC ITSN1 CDCA7 CDCA8 MRPL18 F11R MRPL16 SMC4 VPS26A IPO11 SMC2 PRDX3 SCPEP1 PRDX5 STMN1 PRDX2 PLK-PS1 FIGNL1 2310036O22RIK PIP5K1B CYB5R1 GSTM5 CENPV TCF19 ANXA1 SSR3 ATPIF1 MRPL28 TIMM22 JOSD2 CDC6 LRPPRC SLC7A5 FXYD5 INCENP PQLC1 TAL1 MTF2 AGO2 PIGA UBAP1 MGLL CDKN3 SLBP WDR26 BTG2 TINAGL1 ABHD5 GM11336 ADK RPN2 MRPL37 PQBP1 OAZ1 RAD51AP1 PPP2R4 NDNL2 SUDS3 TK1 SSR2 PNPO DLGAP5 CDKN2C CDKN2D NDE1 GM10257 ANKRD46 ADAM10 LRG1 FAM213A MZT2 COX6B2 DDB1 GATM PSMA5 MRPL52 PSMA2 TMEM56 MRPL50 LPCAT3 TOM1L1 SLMAP NUCB1 LAMTOR1 CKS2 UBE2V1 PLIN2 TIMELESS TKT RHAG SLC29A1 MSRB1 SETD8 PIGQ LPCAT1 RHD CENPA TUBA1A CCNDBP1 TUBA1C MINOS1 MRC1 RIOK1 TSPO HS1BP3 PGLYRP1 USP7 USP5 YIPF4 EIF1AX GTF2F1 PNRC2 FBXW2 PPP1CB CDC25C SLC25A39 BYSL HAT1 PSAT1 UQCRQ TUBGCP4 ERP29 FKBP4 S100A9 MAD2L1 ARL8B LY6G NHP2 S100A8 AGRN CSF3R RNASEH2C RNASEH2B ODC1 RNF38 SRRT PPP1R15A GTF2B HP SRSF2 FAM117A FOXO3 TSPAN33 HMGN5 TUBB5 TUBB3 RUVBL2 HARS CSE1L USP1 STX2 KPNA1 HMGN2 KPNA2 EIF2B4 MAP2K3 GM10177 ZCRB1 BNIP3L UROS IBTK LSM4 MOB1A LSM3 TFDP1 LSM8 RGCC NIT1 LSM7 NACA MED20 AMD-PS4 BIRC5 LCN2 TPP1 ERH MAX GMNN UBP1 UQCRH SESN1 IGHG1 MPC2 BAG1 UROD PIM1 SLC38A5 AP2M1 RFC4 HSP90AA1 VBP1 TXNRD2 RFC1 ASNS PA2G4 NDUFC1 RAD23A MARCH5 CYB5A CUL4A NSMCE4A CD24A SYF2 CDK4 MCM4 TRIM59 MCM5 CDK1 ETF1 LOC102641332 MCM7 DNAJC9 TOP1 MCM2 SFT2D1 MCM3 IFI27L2A GLO1 ZC3H3 ATP5L MCM10 ATP5O PPP6C ORC6 DNAJB2 RAD21 DNAJB1 ALAD DNAJB6 CES2G ATP5E LBR EVI5 ACP1 SMIM11 SLC37A4 PLA2G12A SMARCC1 GM15421 NDUFA5 MID1IP1 KLF1 PRC1 BPGM RAD50 KLF3 RANGAP1 ASXL1 SMAP1 CDC34 PFKM NGP ANAPC5 DTL FXN EIF3G GM7367 GAPDH BLZF1 BECN1 EIF4A3 MTCH2 2810417H13RIK ALAS2 CEBPD UHRF1 SRI TTK U2AF1 TSPAN13 MFF PPM1G CD59B CD59A ARRB1 PRADC1 UBQLN1 FBXO9 1810058I24RIK WFDC21 FBXO3 ACSL1 IFRD2 RSAD2 BSDC1 GOLPH3L MRPS18A UBAC1 JMJD6 CDC20 ST5 IFI27 CDC16 ANP32E GM6654 CALM2 EPB41 GM15455 WBP1 CMAS WBP2 EPB42 PLEKHB2 WBP5 CCNF UQCR11 GLRX UBE2L6 APCDD1 AQP1 ITLN1 BC002163 PNP BSG TCEB3 TIPIN BTRC E2F8 IFITM6 LONP1 GADD45B XRCC6 GINM1 CMC4 GADD45A CMC2 TALDO1 IRGM2 IGF1 ANK1 GM37013 ZFPM1 SNW1 WNK1 LOC102641872 SSX2IP ISCA2 ISCA1 ANP32B ANP32A FCF1 MGST3 IFIT1 BRIP1OS TMPO PTDSS2 RPS17 KCNN4 SEC62 HIST1H3D CDR2 RHOA CCR1 CDT1 AKIRIN2 TSC22D1 NCOA4 KIF4 AMPD3 1190002N15RIK PDZK1IP1 ANLN IL1B PABPC4 PABPC1 ACTR10 IGHG GYPA TRAM1 DTYMK KIF11 TOP2A MRPS10 BRCA1 CD3G GM29779 MAP1LC3B AUH MIS18BP1 PDZD11 STK38 PRKCDBP EPS15 CTSG PCK2 CTSE CTSD CAMP RAB6A CCT3 ATP6V1G1 SUZ12 MRPS28 NPM3 FAM46C TMEM176A GCH1 MPP1 MRPS24 CREG1 RPA3 PRMT1 RPA1 NUDT9 HNRNPA2B1 HNRNPUL2 CTTN NDUFAB1 GM9706 MARS SAA3 0610010K14RIK CHIL3 CD47 FYTTD1 VMP1 IGHM FEN1 AHCY PRIM2 CD5L GM15151 NUDT3 MKI67 TRAK2 NUDT4 LOC102641947 ACADL XPO7 BCAP29 GM4246 RAC1 RAC2 NUSAP1 ARIH2 NFYA CCT7 CCT5 LMO2 UBE2H RALBP1 CAR2 CAR1 LIG1 CPSF3 SLC31A1 SDHD UBE2A TYROBP TUG1 DOK1 TBL1XR1 GFI1B UBE2S UBE2T TMX1 UBE2O CAPZA1 PPIF CDK2AP1 ABCG2 GRINA YPEL3 OTUD4 PCNA OTUD5 NDUFB11 NAPA SLFN4 AURKA MPO CPOX TYMS COMT COX6A1 LMNA PCNP CCND1 TAF1D ASAP1 PTTG1 ROMO1 CAPN2 NDUFV2 DCLRE1A PCYT1A SPECC1 SLC30A9 KIF22 BUD31 CKAP2 NASP ISG15 KIF23 LOC102643093 PDIA6 AZIN1 ISG20 CCNA2 GCLC MKRN1 UBE2R2 GNB2 UBA2 TAB3 KIF2C PRTN3 GCLM MXD4 TXN2 TXN1 COX17 DOCK9 SPPL2B HTRA2 PDS5A COX7A2 CCNB2 HELB CCNB1 A4GALT MARK3 RBM17 TSFM POU2F2 CBX5 MT1 PPP2R5C MT2 COQ9 PPP2R5A GRHPR POLA1 POLA2 RBL1 HAGH CARM1 MNS1 SOWAHA NDUFS1 STX5A LPIN2 IFT46 ABCB4 PMF1 PSMD13 STOML2 PSMD12 PSMD14 TBCEL CKS1B HMGB3 LMNB1 HMGB2 CASP8 SEP15 HEBP1 IGKV10-95 GM5879 TOPBP1 MADCAM1 ISOC1 ECT2 1300017J02RIK RBM14 FAHD1 RRM2 RBM38 HSDL2 H2AFZ GM10651 RRM1 NAA10 H2AFX DCK EPOR SOD1 ALDH1A1 PITHD1 SLIRP LTF HIST1H2BC HEMGN USP15 H2-T24 MEA1 USP10 DCTN2 YBX1 SLC4A1 YBX3 HSPD1 USP18 CLCN3 HMGCL C330027C09RIK LYL1 NIFK BUB3 6430706D22RIK BUB1
Down-regulated by cystine and theanine in IAV-infected mouse spleen GBP7 ACOT9 WSB1 MX1 BAD CADM1 MX2 IGHV1-77 UPF3B SCAMP2 CHFR COL1A2 CD2 HNRNPK SDPR CD7 LOC105247328 TOLLIP CD6 ZFP275 ZSCAN26 LEF1 RNF2 RALB H2-BL PDXK AHNAK RNASET2A DLL1 TPGS2 ADCY7 ZMIZ2 AKT1 S100A14 PIP4K2C GBP3 NDFIP1 CREBBP CELA2A H2-D1 KLF13 GM10693 PRKCD IGHV1-54 NR1D1 PRKCB VPS37B NR1D2 NUDT16L1 PBX2 FANCD2OS IGKV16-104 TBL3 BIN1 PRKCQ STRN FERMT3 UNC119B POM121 RNH1 IGHV1-62 COPS7B GNS PRKDC COPS7A ISLR CFP RRP9 FAM134B SPIB FCRLA SOX18 TBK1 FIGNL1 IGH-V3660 TIMM17A PLCG2 IGH-VJ558 LYPLA1 USP9X IGKV17-121 ANXA5 ITPK1 IL10RB SEC16A TCF12 PTCH1 GNL1 IGHV1-37 PAWR POU6F1 LYRM2 ZFP110 GAS6 ARF3 IGHV1-42 RPN2 CLTB BMYC AEBP2 IGKV2-112 MS4A4C MYO6 ZFP362 LOC102641289 TIMP2 GPRASP1 PACSIN1 YTHDF1 MEF2D YTHDF3 PGAM1 GSTO1 TMOD3 WWP2 BGN ARCN1 IGHV1-18 IFI202B TM9SF3 MS4A6C NFIB PLEKHO1 SHKBP1 ANGPTL2 PLCB1 FRYL ZSWIM1 SMG5 LOC665506 CTDP1 PIGR ERO1L TMEM265 IGH-VS107 UBL3 SPIN1 MYEOV2 TMEM38B CCL19 NUDT14 SEMA4A MAP3K3 GH FBXW4 MAP3K1 SEC24C YIPF3 IST1 IGKV14-111 GM11127 USP3 IGK-V1 DOLPP1 SPICE1 SERPINA3N TUBA4A NRBP1 FOXP1 CXCL12 ZFP26 STIM1 LY6A FKBP8 PDCD4 PLXNB2 CHTOP CSF1 DGKA H2-K2 CTGF LAPTM4A RBBP6 CDH1 H2-DMB2 H2-DMB1 STX7 SLC39A7 PHLDA3 5031439G07RIK IGK-V8 MYPOP PCYT2 F2R HPS1 IGFBP5 OSBPL5 IGHV5-15 RBPMS IGFBP3 GTF3A KCNAB2 TRAF3 POLRMT DYRK1A MFHAS1 MYD88 FRMD8 EIF4G1 SLC25A53 MDM4 FCER2A RNF167 EIF4G3 H2-AB1 IGK-V28 MDM2 ZFP106 BLK FTO PARM1 ZFP105 NELFA CBFB NCF4 H2-M3 H2-M2 RORA IGH-V7183 IGHG3 BTBD1 G3BP1 HNRNPDL TXNDC5 PLXNA3 PIM3 IGKV8-24 GPX1 ACTR2 UNC45A RAD23B MARCH7 EPB41L4AOS TNFRSF1B SON LCP1 IMPAD1 CDK4 CPD PIK3C3 TNRC6A VPS4B LMBR1L ITPR2 SPATA6 GM15772 IGKV4-57-1 KLC1 ITPR1 GM2808 KLC4 PSTPIP1 PLRG1 VPS53 TNFRSF18 H2-OA B4GALNT1 LOC105242484 IGKV7-33 SMIM14 ADSL CHUK IMMT AI607873 GFER CIRBP KLF4 KLF9 PKM DNAJA1 LCK EVI2A KLF6 APOC1 EIF3M SNRK TCRB-J P2RX1 TXNIP OCIAD1 KCTD12 RECK SPG21 RNF10 HDAC5 EIF4A2 LSP1 ITGB5 GM38417 CXXC1 IGKV15-103 COCH SLC25A28 CCL5 UBTF TRIM27 ITGAV ITGB7 DCAF12 POLR2J TRIM21 SEC11C PGM2 SLC25A25 SLC12A4 ENTPD4 IL1R2 SFMBT2 ZFP1 CNBP EBF1 ACTN1 MOGS CELA1 PISD SMARCA2 PEX14 TTC39B IGHV10-3 RIN2 TLN1 MTPN SLC23A3 IGKV6-13 IFITM3 IGKV6-15 KDELR2 CCNI LRP1 MYCBP2 SLC35B2 IGKV4-91 STXBP3 LMF1 AKAP8 IL27RA C4A PSMB10 UBAP2L DAG1 APBB3 B2M RAB11FIP5 N4BP1 RABGAP1L AQR XBP1 TMED9 H2-EB1 IGKV4-61 ST6GAL1 ST8SIA4 ERDR1 IGF1 CTPS ARFGAP3 SRPK2 EXT2 RPS27 SPRTN IGKV4-59 LOC102642602 GRB2 DXO RGL2 GCDH ATP6V1B2 GLTP IGKV4-74 MACF1 IGKV4-73 TXK CTR9 TEX261 IFIT2 TXNDC16 GOLGA3 PRRC1 CD79B RASSF2 DGUOK CHTF8 GOLGA5 INPP5B TSPAN9 DPF2 TRP53-PS EPC1 ARL6IP5 RPS10 RPS12 IGKV4-68 GM40892 ATP6V0A2 SCN1B NCOA3 APOBEC1 WARS ZRSR1 FAM32A AP3B1 RENBP GNG12 UBE2G1 VAV1 RAB33B RHOC IGH-V3609N PTPRE LAT2 NR5A1 FUBP1 RHOQ LOC102635048 AU021092 CCNG2 ID2 ARHGEF2 CD27 ARHGEF3 IGHD TLR6 ALDOA IGHG SGK1 GM9840 IGSF8 TOP2B ACVRL1 SLC44A4 CLIC4 RRAD KLK1 ARHGEF1 CETN2 IDE GM16340 CD3E NNT PPP3CC SNX2 HLTF ZMYM4 ANKRD2 TNFAIP8L1 EPS15 PAG1 TOR3A TGTP1 CCT3 CD52 ZFP930 ZFX ITCH SPCS2 ESYT1 TPST1 HNRNPH3 CD48 RAMP2 SIPA1 2010111I01RIK IGHM AW549877 ZFP703 ZFP706 GNAI2 PDCD2L PPP2CB CST3 SERP1 AKAP12 5730408K05RIK CXCR4 CXCR3 SCD1 MGAT1 MAP4K4 CD55 PDGFRB 1700097N02RIK PDGFRA KLK1B21 PTCD2 C1RA CD72 UQCC3 IFI204 TSC2 LIFR VCAM1 WBP11 KLHL21 GDF10 DPM2 CR1L CAPZA2 TRAC KLRD1 UBE2M RGS19 DAP3 ZCCHC7 CD83 TNXB RGS14 SLFN2 GIMAP1 RGS16 ZFP36L1 INPPL1 RRBP1 CIB1 ATAD2B ATP2C1 RELB CWC22 SPTSSA TRP53BP1 EMC6 IGHV8-9 OLFR71 CMTR2 SMAD4 PCID2 BUD31 SLC30A5 HMHA1 CTPS2 CYBB DNAJC15 DDX51 UPK3B GLTSCR2 NAT6 DIAPH1 H2-EA-PS PRPF8 HGS EFNA3 H1F0 SELL COL6A2 TCF7 UBA1 SKIV2L FBN1 IL7R PKDCC GM40498 DDX5 LPL ROGDI HTRA2 LTBP4 ETS1 RASGRP2 ACTG2 TMEM222 RGS3 ZMAT3 UBD SIRPA TCRG-C4 MARK2 POU2F1 MKL1 SPATS2 USP24 NFKBIZ GPCPD1 DNM1 EPN2 TAPBP CLK2 ELF1 CLCN5 IRF5 RCN1 IRF8 MYH9 ZMYND11 MS4A1 FAM60A B4GALT1 CXCL9 D430019H16RIK CHD7 DBP PDLIM4 ADGRE1 TMEM205 CASP3 BLNK TRDC CCDC186 CYTIP PRPS1L3 RBM39 DDX17 HIST1H2AL ARID1A YWHAZ LOC102634459 USF1 ZAP70 ERCC2 DDIT4 SUGT1 ACKR3 NUP107 LTK PRKCSH RPS4L MVP GOSR2 ATP2A3 EHMT2 CLCN4 SAMHD1 SLC4A7 GPI1 ABHD16A SEC61A1 GNA13 PTK2B POLM DIP2B MAPK1 IGLC1
Up-regulated by IAV-infection in mouse spleen GBP7 MX1 MX2 IGHV1-77 DEK XPNPEP1 HMBS IDNK PSMC3 IGTP VPS29 SF3B5 RB1 RALB GHITM PPOX PSMD9 GTPBP1 PSMD5 ZMIZ2 PSMD6 TCOF1 NUP85 PSMD1 ST3GAL5 STOM PIP4K2C GBP3 GBP2 SNCA NFE2 GM10693 DAXX IGHV1-54 RMDN3 D17WSU92E FANCD2OS FAM220A EIF6 SIVA1 EZH2 PHB2 IGHV1-62 TFRC ATP5C1 SMC2 GUCD1 PLAC8 CYB5R4 TBK1 PRDX2 PRDX1 FIGNL1 IGH-V3660 TIMM17A CDK5RAP3 GSTM5 IGH-VJ558 LYPLA2 TPI1 IGKV17-121 MCRS1 ATPIF1 LOC102641294 NUTF2 CDC6 TRMT1 MRPL30 TAL1 GAS5 SLBP ARF5 GM10362 WDR26 GM11336 RPN2 ARPC1B MRPL39 AEBP2 IGKV2-112 MS4A4C RAD51AP1 ATXN2 EIF3J1 RFK SUDS3 TK1 YTHDF1 CDKN2C STAT1 NDE1 CNPY2 ADAM10 FAM213A FDX1L IGHV1-18 IFI202B COX6B2 CKS2 ZFP131 TSR1 0610007P14RIK LAMTOR5 RHAG MSRB1 PLCB1 FRYL SRPR OGFR SETD8 PIGQ RHD ERO1L IFIH1 UBL5 TUBA1C TUBA1B PSMB1 PSMB2 AIFM1 TMEM38B LAG3 USP7 GM11127 SEMA4D USP3 SPICE1 TAP1 TUBA4A FCGR1 LY6A TRAFD1 SRSF3 FKBP8 LY6D PLXNB2 HP SRSF2 H2-K2 D13ERTD608E FAM117A PARK7 NTPCR TUBA3B TSPAN33 CTGF LAPTM4A TUBB5 HARS SLC25A44 KPNA2 MYPOP SLMO2 GM10177 BNIP3L UROS RBPMS M6PR PGD MINPP1 RGCC LSM7 BCL2L1 BIRC5 MAFK RNASEH2A EIF4G3 CERS2 ZFP106 UBP1 AK6 TM7SF3 SERPINA3G IGHG3 UROD STYX NEK2 NFATC2IP CLCA1 IGKV8-24 SLC38A5 RFC4 TXNRD2 ASNS RAD23A FOXL1 MARCH5 CDK8 CD24A CDK4 MCM4 MCM5 CDK1 ETF1 PSMG2 MCM7 PIK3C3 SERINC3 TNRC6A MCM2 SFT2D1 IFI27L2A NDUFB9 NDUFB8 NDUFB6 NDUFB3 ITPR2 ATP5J GM15772 DNAJB2 ALAD CES2G ATP5E CAPZB E4F1 ACP1 LOC102641325 IGKV7-33 PLA2G12A IDH3G ADSL CHUK GZMB KLF1 PRC1 BPGM PKM SMAP1 APOC1 EIF3M TCRB-J EVL ANAPC1 ANK EIF3E RNF10 TRIM30A RNF11 2810428I15RIK EIF4A2 ALAS2 FHL1 UHRF1 GM38417 ETFB COCH SART3 CD59A MIEN1 TRIM25 TRIM27 LRRC8C FBXO9 DCAF12 TRIM21 HNRNPA3 D17H6S56E-5 LOC102642752 SLC25A25 IFRD2 RSAD2 ACTN1 OLFR29-PS1 MEMO1 UBAC1 PEX14 CDC20 PML ASS1 NINJ1 SLPI GM5446 RIN2 SLC23A3 EPB41 IFITM3 SP100 EPB42 CCNF UBE2L6 AQP1 LY6C1 PNP NOCT CPNE1 APBB3 B2M E2F8 N4BP1 SURF4 GADD45A BROX IRGM2 IRGM1 IFI47 ANK1 SNHG5 ZFPM1 RNPS1 SPRTN LOC102641872 IGKV4-59 LOC102642602 SSX2IP RCOR1 BEX4 MACF1 ISCA1 ARL6IP1 FCF1 IFI35 MGST3 TEX261 IFIT2 IFIT1 GSPT1 IFIT3 TMPO PTDSS2 RPS17 INPP5B RPS19 DPF2 FTH1 RCC1 RCC2 RPS10 LGALS9 ATP6V1C1 STAT5A CCR2 CDT1 WARS FAM32A KIF4 GNB2L1 RHOG IGH-V3609N PABPC4 IGHD IGHG GM9840 COX7C GYPA CLIC4 COX7B KIF11 TOP2A GM16340 MRPS11 HINT1 SNX2 HLTF MAP7 EPS15 CTSE TOR3A TGTP1 FAM46C PBRM1 GCH1 KIT TPST1 NBR1 GM9706 CD48 HDGF C1QC IGHM C1QB FEN1 AHCY C1QA TOMM40 MRPS34 CD5L SLC20A1 AP2A2 MKI67 COX5B NUDT4 XPO1 FTL1 CXCR4 XPO7 GM4246 NUSAP1 ANKRD13A CCT5 LMO2 CAR2 PTCD2 CAR1 FBXW11 LIG1 IFI204 PDAP1 ZNFX1 GFI1B POLE3 TRAC RELL1 CHMP4B UBE2M GRINA OTUD4 PCNA DAP3 CD86 ZCCHC6 SLFN3 SLFN2 SLFN4 HSD17B4 INPPL1 TYMS ATP2C1 GALNT11 FBL LMNA CCND3 CWC22 CAPN5 PTTG1 EMC6 EMC8 ABCF1 PCYT1A IIGP1 SPECC1 KIF22 BUD31 CYBB CASK ISG15 DNAJC15 1110008F13RIK CKAP5 AZIN1 ISG20 PRPF8 EFNA3 MKRN1 TCF7 CHMP2A UBA1 GCLM COPB2 SPPL2B LGALS3BP CCNB2 HELB CCNB1 SIRPA PLGRKT GALNT4 HSPA8 USP24 MT2 GPCPD1 TAPBP DDX19A POLA1 ELF1 NUP50 FES IRF9 NDUFS2 MNS1 IRF7 QRICH1 ABCB4 UBA7 HMGB3 HBA-A1 LMNB1 RPAP1 ELAVL1 ADAR 2700029M09RIK PDLIM1 HEBP1 TMEM208 CASP3 RBM14 FAHD1 RRM2 RBM38 H2AFZ RRM1 H2AFX SSRP1 DCK ARID1A GLRX3 EPOR LOC102634459 USF1 ALDH1A1 DDIT4 TOMM70A PFDN6 AURKAIP1 HEMGN H2-T24 PRKCSH RPS4L GOSR2 DDX24 SLC4A1 YBX3 A430005L14RIK USP18 CLCN4 SAMHD1 CYTH3 ADD1 MAT2A ABHD16A CHCHD7 MAPK1 1110001J03RIK SCARB1
Down-regulated by IAV-infection in mouse spleen AP1S1 CADM1 SLC50A1 TEC CD2 COL1A1 CD5 CD4 IFT88 SDPR ZSCAN21 PSMC5 CD9 FDX1 TMEM126A ZFP277 CYFIP2 H2-DMA ARAF TFPI ASAH1 NXF1 PSMD7 KRTCAP2 VPREB3 CAPNS1 PIP4K2A S100A13 HES1 RPL19 ELANE CELA2A H2-D1 ABCA1 GABARAPL1 NAPSA RPL41 PRKCD NR2F2 PRKCB IGKV16-104 VAMP8 GPR182 PRKAR1A PLBD1 VAMP5 ATF4 VAMP4 WDR48 CFH GMFG VPS26B ENO3 HIF1A ISLR C2 RBPJ FAM134B SPIB ZFP385A JUNB PRKACB AMZ2 GM42035 TRP53INP2 BRAP GSTM1 CHKB SSR3 ANXA6 PAX5 TIMM22 CS GLUD1 GIPC1 NCOR2 PIGK CRLF3 BTG1 ARF1 ADK ELN THY1 PQBP1 SERPINA1B SERPINA1C PPP2R4 KLK1B5 SERPINA1A KLK1B1 GAR1 JARID2 TK2 CCL21A CSNK2A2 IFNGR1 PGAM1 ANKRD46 LAPTM5 UBE4B BGN RNASE4 DHRS3 F5 MRPL45 MS4A6C COL4A2 PSMA3 SDHAF1 SLCO3A1 PLIN2 LAMTOR2 PTPRCAP ENG LAMTOR4 OAT PIGS RPLP1 GSTP1 TUBA1A PHF7 MRC1 MPRIP CKB HS1BP3 CCL19 GSN MAP3K1 USP5 YIF1A PNRC2 MORF4L1 CXCL13 MAPKAPK2 SRSF5 ERP29 SQSTM1 FKBP4 SNRPB FKBP3 CTNND1 CRCP SRSF2 CLU FAM105A LAPTM4B ZFP36 RUVBL2 5031439G07RIK LDLR RAB4B ZCRB1 IGFBP5 NEK7 IGFBP3 CD8B1 EEF2 MED27 MOB1A IGK-V21 ARMCX2 LOC105242499 NACA ARPC4 ARPC2 FSCN1 TPP1 IGK-V28 GM8893 BLK PARM1 MAX FAM107B CORO1A SAT1 STK10 IGH-V7183 LOC105244208 BAG6 IGHG3 IGHG1 TXNDC5 ANKRD10 SETDB1 DNMT3A DBNDD2 DNAJC8 IMPAD1 SLC25A4 SEH1L NDUFB7 ZC3H3 ITPR2 ATP5L PTPN22 KLC1 GTF3C1 PPP6C DNAJB6 PGK1 H2-OA B4GALNT1 MDN1 MARCKSL1 SMIM14 LIMCH1 MID1IP1 MYO10 ATOX1 RANGAP1 PKM ASXL1 PFKL VAPB NGP SEC22B SMAP2 EIF3B CEBPA ITGB1 EIF4A1 LSP1 FURIN PTEN U2AF2 IGKV15-103 BPHL ZNRF2 SGCE POLR2A HHEX LOC102642637 GM2A SIN3A UBQLN1 CSK IMP3 SLC12A2 CELA1 PPP2R1A IGLV3 CALM2 TLN1 IFITM2 KDELR1 KDELR2 CCNI PLEKHB2 WBP5 MYL12B NOCT TCEB3 ARFIP2 TBL1X CPNE3 IL17RA STK11IP GADD45B IGF1 MIF4GD ARFGAP2 GM37013 MYL12A STAG2 PPP1R21 PPP1R18 CREBRF INPP5D CD79B CD79A GNG10 CYP4V3 CD19 MBTD1 AGFG1 GOLGA7 BCL2A1A CTSA RHOA AKIRIN2 TSC22D4 MLF2 ITFG1 NME2 LAT2 RHOQ ID3 ALDOA IGHG ARHGEF7 GM9840 RAB5C TRAM1 SLC44A2 KLK1 GGTA1 CSDE1 CD3G BMI1 PPP3CA GM29779 SEC14L1 PDZD11 UIMC1 STK38 CTSH CD37 CCR6 TMED7 CAMP BCAP31 TMEM176A SYK TMEM176B MRPS24 MTSS1L ITCH ZDHHC16 FAM195B GPAM SAA3 0610010K14RIK SIPA1 IGHM RAB7 WAS ZFP706 PTMS GNAI2 GYS1 CST3 ACADL ENPP2 RAC1 SCD1 RAC2 NFYA SCD2 CD55 UBE2H KLK1B21 CD74 2700094K13RIK LMO4 FAH WBP11 TUG1 DPM2 TBL1XR1 MIR142 TRAC SPNS1 PPIF IGKV1-88 MYADM LRP10 CD83 ATF6B CD81 SYPL MPO RELB NDRG1 PCNP TBRG1 BASP1 PURA IGKC ROMO1 S1PR1 COTL1 CAPN2 SLC30A3 SMAD1 DSTN TMEM115 COL6A1 PROCR GNB2 STT3B GNAS UBA2 MFGE8 TXN2 ATP6V1A COPA DDX5 PXK CLEC16A CNN2 PTRF BC094435 GM3511 ACAA2 A4GALT PSPH TSFM POU2F2 CMTM6 CAV1 CMTM7 GALNT1 SEPT4 NFKBIB NFKBIA PEX5 IRF4 THRAP3 PEX6 RBMS1 CYCS STX5A IFT46 GALK2 COPE HP1BP3 RTN3 GPSM3 GSK3A UBA5 AGAP3 DTX1 LOC102643180 LASP1 IGKV10-95 GM5879 IGKV10-96 MADCAM1 ISOC1 BLNK HIST1H1C GRCC10 PDPK1 HIST1H2AL GLRX3 SOD3 USF2 DCN SGPP1 PPDPF VDAC2 LTF HIST1H2BC PRR5 CLK2-SCAMP3 RERE USP10 ATP2A3 GPI1 MAT2B 1700094D03RIK ARHGDIB TRA2B CDIPT MAPK6
Up-regulated due to SARS-CoV-2 infection from a phosphoproteomics study CXCL8 SERPINA1 TSPAN14 AHSG CCL20 CD9 APOH IL-6 CCL2 TNF-ALPHA A2M IL-10
Up-regulated by SARS-CoV-2 infection in Vero E6 from GSE153940 FNBP4 ZNF282 MRTFA WDR74 GATAD2B L1CAM RUFY1 CAPN15 ASB6 RPL27 CDK13 DUS3L OPTN SNORA21 ATF3 MTMR3 ANKLE2 ZNF394 MAML1 IWS1 ADCY7 MTA1 ZMIZ2 MYC ANKS1A VPS18 CREBBP TSPYL4 SNORA52 ZBTB7A PHC2 STARD13 PLK2 KLF10 RMDN3 BACE2 GIGYF2 ABTB2 EHD4 UCK2 TBL2 SNORA48 SNORA46 SNORA47 FARSA CHST3 ATF4 CEP68 PRR14 PID1 ZNF496 TLNRD1 TRIO N RRP9 LARP1 S RNF217 RNF216 ZXDC SNORA37 PLCG1 IER5 IER3 ZNF367 SNORD94 SNORA74 SNORA71 JUN DUSP1 SCARNA22 PHF12 SCARNA20 EPS15L1 SIRT7 DUSP7 WDR33 GPRC5A TADA2B SLCO4A1 BHLHE40 AGO2 PI4KB PLEKHM2 RAPGEF1 SNORA64 SNORA80B ZNF598 SNORA80C SNORA62 GRAMD1A ELL ZC3HAV1 C1ORF35 NOC4L RILPL1 MED17 SNORA5B TRIM4 RHPN2 SNORA57 RRS1 ATXN1 CIC HMGXB3 TEAD4 TPRA1 YTHDF1 MEF2D MBD6 BRD2 BRD1 AEN TTC7B GTF2H4 C12ORF10 DAB2IP SCAF4 CLIP1 ADAM15 EEF1AKMT4 ZNF574 XXYLT1 RPLP2 PHF2 PHF1 LPCAT1 ING1 GRAMD4 GP05 ORF3A UNK RRP12 ZNF205 SEMA4B ZBTB18 SEMA4C MUL1 ZBTB10 TAP1 UCKL1 THNSL2 SLC7A6OS LRFN4 BYSL KAT6A ZNF316 S100A4 PPP1R15B DGKD SRRT PPP1R15A KATNB1 UBN1 FOXO3 BCL2L13 GGA3 RAB20 ZFP36 RAB24 NSD2 KMT5A SH3BP5 STX5 LDLR NOP14 PIAS4 MAP2K3 ATP8B2 AIP TNFRSF10B TRAF2 B3GALT6 HPS6 MED27 NFKB1 NFKB2 MAFF SH3BP5L FRMD6 TRAF4 RAD54L2 CDC42EP3 RNF166 PFKFB3 DIDO1 NOTCH1 NELFA KMT2B IRS2 KMT2D ISG20L2 IPO4 GPATCH2L ARHGAP6 RHOBTB2 ORF7A SESN2 ABL2 ANKRD11 PIM1 PIM3 SEMA7A MAP2K7 SLC38A5 REXO1 PPP1R12A PTPN14 REXO4 TNFRSF1A MSL2 DNAJC4 BCL9 NOA1 BCL3 PSMG3 BCAR1 GTF3C4 ZNRD1 RDH13 ZNF746 RREB1 IP6K1 SMIM12 CEP131 MID1IP1 NFKBIL1 FEM1A NGF ASXL1 KLF7 TSPAN15 PPM1D KLF6 DNAJA3 POLR1E NOP56 TRIM35 ZMYND8 SRC WDR4 SRF PIK3CD NOB1 AMBRA1 SRP SART3 ZNF609 ADAMTS1 HAUS8 TRIM26 SLC25A22 ORF1AB ARL5B ILKAP IMP3 YOD1 PISD PML SNORA17A PC NEURL3 EPHA2 TRIM11 RIN1 AKAP1 PANK2 ATP23 LMF1 CISD3 PPP1R3B LRP8 NUAK2 CPNE2 E2F4 CCN1 AAR2 SURF2 XBP1 ABT1 GADD45B GADD45A TOP3A XRCC1 NUAK1 IFFO2 ARFGAP1 SCARNA6 INTS5 SUGP1 PPP1R18 TXNDC11 GOLGA3 RASSF1 MICAL1 FAM53C KAT8 RPS14 ZBED4 IL11 ITPRID2 TSC22D2 NCOA5 AMPD2 LIF MTSS2 TFAP4 ID1 FAM193A ARHGEF5 U1 STK40 U3 SNORA38B CITED2 TGFA SOCS3 FXR2 SBNO2 PGS1 GSE1 SNX8 LMCD1 SOCS6 MIB2 CARS2 TRIP10 CARS1 SNORA16A PRICKLE2 TRAK1 SPPL3 SH3RF1 AKAP13 SERTAD2 SERTAD3 EP300 XPO6 MARCHF9 TBC1D22B ANKRD13B IL4R KLHL26 ARID3A PPP4R3A KLHL21 PHOSPHO1 MAU2 AMOTL1 UBE2O FAU AMOTL2 RGS19 SFSWAP SNORA10B ARID4B ASAP2 IFI6 YARS2 HIRA PURB MORC2 TGIF2 SPECC1 ADPRHL2 AUTS2 DDX56 ARHGEF17 INHBA TIMM44 SLC30A1 ISG15 SMAD7 ACSF3 TAB1 ARHGEF28 TACO1 CLEC16A ARHGAP17 CAMSAP1 RTL6 CREBZF TMEM222 PODXL SNORD17 SNORD15 PMAIP1 NUC ATP6V1H MARK3 PDZD8 MARK2 ZNF385A KDM4B RBM15 URGCP ZFHX3 SETD1A NFKBIZ AXIN1 TGFBR2 IRF1 NFKBIA NUP50 TNIP2 IRF9 ATG4B NAT8L ABCC1 DDX49 B4GALT2 DIPK1B TGFBRAP1 TNFAIP3 CHD6 SLC3A2 ARHGEF10L TTC28 PDLIM2 TMEM201 AFF1 PDLIM4 GRK6 KDM6B RHBDF2 KDM2A SPEN DAPK3 LMTK2 ARID1A PLAUR THAP3 USF1 IRGQ SNTB1 DDIT4 SPRY2 TRIB1 DDX27 KRT80 RERE TUFT1 WIZ LAMA4 EHMT1 KANSL1 FLCN GNA13 RBM33 POC1A
Down-regulated by SARS-CoV-2 infection in Vero E6 from GSE153940 STARD4 SARNP VPS29 POMP GHITM RNF5 ASAH1 CLDN2 TOB1 PCMT1 GNG4 FAM168B UGP2 TFG SPOCK3 STOM WLS NCSTN NDFIP1 ICMT PMM2 ATP6AP1 WDR54 PDZK1 SLC6A6 VAMP7 SFXN1 LGMN PSME2 PPT1 SFXN3 CRYAB PRR13 VAMP3 UNC119B MRPL15 GNS PRKDC MICOS13 F11R MRPL13 VPS26A BLOC1S5 ADH5 GCSH PRDX3 SCPEP1 ALCAM STMN1 EPB41L3 LTA4H PRKACA GABRA2 TPI1 ANXA5 PLXDC2 LYZ MMP10 VMA21 PXMP4 EXOC5 TMEM106C PIGN TMEM106B ERGIC2 BTG1 SEL1L ACAT1 ADIPOR2 OAZ2 GLG1 MRPL42 MRPL40 EPCAM ERMP1 TIMP2 DLGAP5 TMOD3 ACOT13 KIDINS220 DHRS1 MRPL46 ARCN1 ERP44 TMEM59 DDB1 NUDT21 PSMA5 BDH2 RNF128 PSMA3 AGPS IVD USO1 LAMTOR2 CLDND1 MSRB2 PIGT OAT PIGS PHF6 NDUFA10 HEXB GSTP1 PIGW PSMB6 TCTN2 AIFM1 SRP54 MDH1 PAIP1 SLC39A1 SEC24C S100A3 YIPF4 YIPF5 YIPF6 CYBRD1 MSH2 ATP11A MORF4L2 COPS6 HAT1 SYPL1 FKBP9 C18ORF32 PDCD4 C11ORF58 POGLUT2 ATP10D TSPAN31 NTPCR CASC4 GLT8D1 PAPSS1 CDH6 LAPTM4B CLCC1 LAMP2 PIPOX RBBP9 SRBD1 SLC39A6 SLC39A9 SPP1 RBBP8 RAB29 HMGN3 NEK9 IK BNIP3L NRDC CYB561A3 PGD FBXO32 DDOST GGCX TPP1 NIT2 RNF167 IFNAR1 SYAP1 CALCOCO2 NCF2 GMNN FAM107B MSI2 ARL1 RHOBTB1 EFEMP1 THEM4 G3BP2 EIF2B1 RAB4A IL13RA1 PLS3 CYB5B RFC2 LANCL1 PCCB NPC2 RRM2B MFAP1 SYF2 DSG2 SERPINI1 MCM6 ACO1 SERINC3 MCM3 NDUFB8 GTF3C6 CCDC25 SNAP23 NDUFB5 GLO1 NDUFB2 EFCAB14 ZMPSTE24 PSAP RDH10 B4GALNT2 NDUFA9 SMIM14 NDUFA8 SLC36A4 NDUFA5 NDUFA2 TP53INP1 CIRBP PPM1A UNC50 CD109 OCIAD2 TRIM37 ANAPC5 RAB18 FOLR1 BET1 PRPS2 CCDC47 ETFA ATRAID HSD17B11 TSPAN12 GANAB MIEN1 PTER ADAMTS9 SH3D19 IDH3B H2AZ2 DUT SMARCA1 ASRGL1 PPA2 LACTB2 ANP32E AHCYL1 WBP2 STXBP3 CISD2 DPCD PYURF MAGOH NFS1 PDCD10 SNRPD2 NIPAL3 IARS2 CPNE3 DENR HABP2 COX8A TMED9 APOBEC3G LIX1L CMC4 MIF ACADSB PLAAT3 COMMD7 UCHL5 RPL39L CCDC88A PLPP5 GOLGB1 SPATS2L ITM2B APOBEC3C JPT2 SPARC BEX3 ECI2 TXNDC12 GDE1 DCUN1D1 GNG11 GNG10 ARL6IP5 TSPAN6 GLUL ATP6V1C1 CTSB CTSA PSENEN BBS2 STRADB TSC22D1 AKR1A1 AP3B1 ITFG1 CLDN10 TOP2B TMED10 HIBADH KIF11 CETN2 STRAP CETN3 TMEM185A HNF4G TWF1 PSMC3IP HLTF MAGT1 CTSL HTATIP2 MPZL1 TMED2 DYNC1I2 SNX6 ATP5PF BCAP31 MCCC2 RPA3 MRPS22 AKR1C3 RPA1 PGRMC1 THOC7 FKBP1A DPY19L1 SPCS1 NDUFAB1 PLA2R1 CD46 CD44 CMPK1 AHCY GBA MRS2 ZDHHC6 NUCKS1 COX5B GNAI2 ROBO2 CST3 PGRMC2 SPTLC3 ACADM DNER FAM3C CTNNA1 RALBP1 CA12 PHYH NPNT EPDR1 APLP2 CWC15 UBE2A ATP1B3 DPM3 PPIA TMX4 SELENOT CAPZA2 SCG5 YPEL5 XPR1 ZFAND6 AURKA BCCIP SELENOF ATP1A1 PBLD GALNT11 NDRG1 TMEM123 SLIT2 GPC4 SPTSSA IDH1 EPHX1 CKAP2 PDIA6 DARS1 ALDH3A2 FMC1 MKRN1 STT3B UBA3 DYNLRB2 CDH17 MICU1 CHMP5 TMEM35B SAE1 COPA VCP COX17 COX16 TRIAP1 JADE3 CNN3 COX15 ACAA2 PAIP2B ZNF385B WASHC3 BCKDHB MMP1 CAV2 CMTM6 MSN CBX1 PPP2R5D LAMB1 PEX2 TGFBR1 PJA2 RBKS RCN2 DAP RBL2 ARL2BP NDUFS2 EAPP LPIN2 B4GALT4 SMIM3 TRARG1 PSIP1 SLC3A1 HMGB2 SCIN CASP6 TMEM205 MFSD1 ECT2 DDX18 TIMM8B TMEM30A HSDL2 RRM1 GLB1 CAT SLIRP RBM47 PFDN6 CLUAP1 SCARB2 MSMO1 RBM3 MAT2B NPTN
Up-regulated by SARS-CoV-2 in cardiomyocytes from GSE150392 MX1 RFX3 EVA1A DKK1 AP003396.5 L1CAM SPINT1 ASPHD2 TNFSF4 FNDC11 AGTR1 GTF2IRD1 ATF3 SERPINE1 AC005532.1 C3AR1 ADARB1 SLC5A3 TFPI ADCY7 GNG2 APOL6 SRPX2 PPP4R2 GPBP1 CSPP1 MYC STOM CYP1B1 UBASH3B HES1 GBP3 HOXA5 TIGD3 ZNF143 CNTD2 PRKCD STARD13 PLK3 KLF10 NR1D1 BAZ1A FOSL1 AL049844.1 SNAI1 PRKD2 FERMT3 PTP4A1 GPR180 GPR176 ZC3H12A C9 SOX17 TMEM200A JUNB IER5 SLC19A2 AC015813.2 DUSP6 JUN DUSP4 AC107959.1 DUSP1 CHKA SPHK1 TET3 EMP1 NFATC2 ADAM32 CARD6 DCBLD1 CD200R1 SLC7A5 TTLL8 CRLF1 BHLHE40 AGO2 CENPL BHLHE41 PIGA RAPGEF2 REL ANKS4B ACHE FPR3 THY1 MYCT1 AC092687.3 SERPINB2 BRD2 CDKN2B FOS AEN SLC2A10 AL137026.3 SERPINB8 RFLNA BAAT TMEM158 FOSB SNX16 ANGPTL4 CACTIN ENG LINS1 ERO1A RARG AC116366.2 PTAFR ATL3 PTGS2 LMAN1 MRC1 LINC01823 GPAT3 ZSWIM4 UVRAG TLE3 PHLDA1 AOC3 TLE1 ZBTB17 TFPI2 IPMK SSUH2 TAP1 NCF1 SQSTM1 KCNG1 RNMT CSF1 PPP1R15A LSMEM1 AC025263.2 TNC HR ZBTB21 ATP10A PLOD2 PAPSS2 CDH6 GOLGA7B RBBP6 HAS2 HAS1 NPTX2 LINC01209 SLC16A3 MAP3K8 SH2B3 CPA4 TRAF1 KCNAB1 FOXN2 NFKB2 MAFF MYD88 ACTBL2 LINC01119 SP140L BIRC3 ANKRD33B PFKFB4 KCNE4 CDC14A GPR87 RLF FGF7 TXNDC5 ABL2 PIM1 PIM3 C1QTNF1 AL358777.3 KCNJ6 AL135905.2 AL137129.1 ITGA5 ITGA4 DTX3L TMEM255B GFPT2 ITGA2 NRG3 PTPN14 FOXL1 BICC1 TNFRSF1B ARL4C DAB2 BCL6 BCL3 CPM BCAR3 GAL3ST1 SHMT2 PTBP1 DRAM1 KDSR KRTAP5-2 EMILIN1 FNIP2 SKIL IP6K3 OVGP1 KCNH7 SMOX MYO10 KLF5 KLF4 PTBP3 KLF9 ASXL1 PPM1D AC074091.2 TRIM38 NPIPB9 NPIPB7 NPIPB6 AC090023.1 PRR5L THBD CCL7 NHS CCL2 TRIM22 SLC25A25 IL1R1 IFRD1 AC002480.2 RUNX1 AC117488.1 MFSD12 APLN JMJD6 TM4SF1 MALL CCDC80 CTH TRIM14 SMIM41 EPHA2 TMEM87B SP100 GORAB ARNTL NUAK2 ELMSAN1 CCNL1 SLC12A8 EGR2 GADD45B ARRDC2 PLA2G4C ARRDC3 PLA2G4A PAPPA RAB27B NUAK1 IFI44 HLA-E CDCP1 PARP10 WNK4 INTS6 SPDYA AC073610.2 PTGES GRB7 SLC22A3 AF001550.1 CREBRF ZBTB2 JMJD1C PCDH15 ART4 ICAM1 INSYN2B IFIT3 HELZ2 SNHG26 KCNN1 HIVEP2 ARSI PDK4 HIVEP1 PPP1R10 CD14 IL11 NCOA7 BTN3A1 NXPE2 AC000072.1 VEGFC AMPD2 LIF NBPF10 SLC35E1 PDCD1LG2 OSMR NBPF14 IL1A NBPF19 IL1B TG TOX2 AC133644.3 AP000790.1 FJX1 SGK2 SGK1 CSRNP1 PXT1 TRAM2 USPL1 FAM43A STC1 PTPRN STC2 PCSK9 NEDD9 MEDAG SOCS3 SBNO2 UGCG PCF11 NPC1L1 TNFAIP8L3 PCK1 AC008770.4 IL33 SUSD3 LIMA1 PDP2 NR6A1 PER2 TPST1 PER1 CMPK2 F2RL1 UBE2Q1-AS1 TMEM72-AS1 CD44 CARS1 SELPLG SLC43A3 PTGER2 AMIGO2 TOR4A SLC20A1 SH3RF1 SERTAD4 CXCR1 RSRC2 POFUT2 IFNB1 LMO2 CA12 H2BC8 GDF15 OSM TRPV2 DOK2 IFI44L SPOCD1 DOK5 FAP TGFBI CASS4 PDE7A CD68 ULBP2 GALNT12 GALNT15 SUCNR1 CD83 CRTC2 HFE PVT1 ARID4B SLC1A7 RELB LOXL2 NDRG1 LOXL3 GRIP2 NT5E Z84488.2 MICB SLC30A7 INHBA LAYN AP003108.1 SELE GEM CKAP4 NR4A3 ISG20 NR4A2 LOX TMEM119 TAF4B CDH16 TGIF2-RAB5IF CABP5 ARHGEF28 SLC2A3 SLC2A5 PLAT CSF2RB NR4A1 SLC2A9 RGS4 PDZD2 SNIP1 PMAIP1 MLKL TGM3 HS3ST3B1 SRGN HSPA6 MRGPRX2 BNIP5 NFKBIZ SSTR1 OAS1 ETV4 H2BC18 CLK4 PYY BMP6 CLK1 IRF1 NFKBIA C7ORF61 ELF3 IL6 OAS2 OAS3 AGAP6 IRF8 IRF7 NFKBID BMPR1B CXCL8 SMIM3 TNFAIP3 CXCL2 AC011603.3 CXCL1 CXCL3 CHD2 CHD1 HAPLN3 DBP FAM83G HRH1 IRAK2 LRP5L CASP4 OSTN-AS1 ADGRE5 SNAPC1 CA9 CFAP43 CFAP45 IL15RA PTGIS SPEN TMED7-TICAM2 TPBG PLAUR ANXA10 OOSP3 PDE10A GREM1 AC004083.1 SPRY4 CRY1 DDIT3 LTA INA PTX3 HLF LDB2 MVP RB1CC1 KANSL1 ACVR1C MYRFL CIART SAMHD1 IL1RL1 FLCN SPRED3 SPRED1 CLMP CHSY1 SIX4 ZPLD1
Down-regulated by SARS-CoV-2 in cardiomyocytes from GSE150392 DES MYL7 FAM133A IFT88 MYL2 MYL4 AGTR2 ACOT2 ACOT1 NHLRC3 FILIP1 LINC00648 REC114 MYL9 RHNO1 CPVL ASF1B ASB2 HCN4 LINC00880 LINC00881 PGAP3 CRABP2 NCAPG NCAPH TMEM71 FBXL22 KNSTRN CRACR2B GNG7 AC116351.1 GTSE1 TAF9B AL356123.2 LINC01880 AC092171.5 NEBL PLK1 TNNC1 CRPPA IRX4-AS1 RMDN1 AIF1L SETMAR DHFR PBX1 FERMT1 FAM111B GPR183 PKIA RNF207 LINC00667 MKS1 AC006333.1 CDCA3 SCHIP1 CDCA5 CDCA8 TMEM97 ENO3 PRKAR2B GJA5 PLAC1 MTERF2 PRIMA1 MYBL2 LINC01621 SMCO1 CENPU C11ORF21 PDHA1 RMI2 TESC GABRA4 KIAA1143 CDC6 SIRT3 FXYD1 CENPF GJD2 MMP15 TMSB15A CENPM HRC TMEM106C ANKRD63 MYZAP FXYD6 CDKN3 LIMS2 GPR27 SLC25A21-AS1 AL136171.2 GPR22 DMAC1 ACAT1 HIF3A TMEM163 AP001107.5 SHD LDHD RAD51AP1 C14ORF180 CSRP3 TK1 PBK AC147651.1 CEP55 NINJ2-AS1 DLGAP5 TMOD1 LEFTY2 AL159166.1 ODAM G0S2 PGAM2 GATB STAT4 FMO4 PTGR2 SPSB4 FABP3 GATM PTENP1-AS PLCB2 SMTNL2 DUBR C11ORF52 COL11A2 EFCAB7 AC074387.1 TMEM141 MARCHF11 RCSD1 TMEM143 TMEM144 LRRC10 USP46-AS1 HEY2 SULT1E1 NUF2 PRDM16-DT FPGT-TNNI3K METTL7B NUDT16 TECRL AC068700.1 AP002761.3 ITGA10 AC107068.2 CSPG5 C11ORF74 C11ORF71 FAM47E LSMEM2 AL021392.1 HJURP BZW2 MACROH2A2 TSPAN32 TSEN2 AC018521.5 C1ORF105 CDH3 NTF4 AC020909.2 NIFK-AS1 KCNH2 C1QL1 FANCL GOT1 FRMD3 HOPX NDC80 FRMD5 KIFC1 AC104825.1 ZNF418 BIRC5 TROAP AC008575.1 SLC27A6 AC126773.4 FAM13C PDZRN3-AS1 ZC4H2 HNMT FOXM1 AC068733.3 CHAF1B NEK2 GYG1 OIP5 MARCH11-AS1 TSNAXIP1 SLC38A3 HHATL COA5 AC009133.6 GPX3 PPP1R12B KCNIP2 KCNIP4 NAV2-AS2 REXO5 NSMCE4A SYNPO2L VSTM2L TNMD SLC26A9 MCM5 CDK1 NES ITGA7 TRIM54 TRIM55 LINC02502 TRH C15ORF41 CLCNKB NREP MB XIRP2 DRD1 CCDC34 PHACTR1 SPX PPP1R14C CKAP2L MMAB NICN1 AMT MIR133A1HG PRC1 CIRBP TBX5 HAND1 HAND2 NECTIN1 DTL AC126468.1 SMARCD3 ALAS2 TYRP1 UGT2B28 SLC5A12 FOXRED1 EDNRA CKMT2 CDC45 HAUS8 SCRN3 SGCA TNNI3 TNNI1 ADHFE1 MTUS2 ANKEF1 AC008440.1 LINC01182 MTURN OXCT1-AS1 CDC20 SFRP5 SFRP2 NEIL3 PPP1R3C ULK4 COL9A1 CORO6 CCDC87 KIF20A AL008729.2 AC109583.4 CPNE5 VIPR1 SMPX AC022034.1 STRIP2 Z85996.3 E2F1 AC119427.2 SUSD4 CPNE4 FSD2 PCLAF CALN1 SH3BGR SRPK3 MIR1915HG DTNA FAM78A RPE65 PLPP7 TNNT2 PPP1R1A AC012060.1 PPP1R1C ANKRD18A TLCD4 PTGES3L INKA2 ZBED8 PDE1A SLC35D3 AC092353.2 ACSM5 LGALS3 RASSF4 PDK1 DECR1 PDK2 AC018647.1 APOBEC2 AC097526.1 KLHL3 NME5 MSS51 MLF1 ZWINT SORCS3 AC104971.1 AC010680.4 TRDN-AS1 ALDH6A1 MPPED2 VSNL1 AC010680.1 RTCA-AS1 DEPDC1 ALDOC ATPAF1 AC007009.1 HMGCLL1 CLIC5 MAOB TOP2A FITM1 AP002360.2 CLYBL BABAM2 STK33 MAP3K20 INKA2-AS1 CD36 LRRCC1 SMYD1 CAP2 PRMT6 ATP6V1G2 ATP6V0E2 PARP1 SUSD2 SORBS1 UBE2E1 SORBS2 AL158829.1 ALDH5A1 SPC24 TXLNB AC104083.1 AL392089.1 RAB9B AC242426.2 TCAP TRIP13 SPC25 FEN1 LINC01278 AKR1B1 DIRAS3 AL670729.3 NUCKS1 ICA1 NUDT7 SH3RF2 ATP5F1A DGLUCY ENPP5 NUSAP1 ACADS CORIN GINS2 HFM1 MLIP PHYH GUCY1A1 MOG KLHL23 CNOT11 COLQ EEF1A2 SELENOP SGO1 GPD1 UBE2T POLE2 DOK7 FAM185A YPEL1 KLHDC9 MASP1 AL157702.2 MIR1-1HG-AS1 ATP1A2 COX6A2 TYMS MANEA AURKB CLGN EFNB3 CAPN3 TBX20 RXRG KIF22 SLC30A3 HAND2-AS1 EPHX2 CHCHD10 CKAP2 ADPRHL1 CCNA2 QDPR FGF10 COL21A1 CASQ1 CASQ2 KIF2C FGF13 FGF12 AC092164.1 CCDC121 ROGDI PLCXD3 C17ORF97 SLC2A8 CCNB2 CCNB1 NPPA FPGT STARD4-AS1 AC098595.1 A4GALT HADH SH3GL3 ZNF385B AC087457.1 BCKDHB TRDN CAV3 MYOCD AL031123.1 FGF13-AS1 NAP1L3 NAP1L2 PEX3 BMP7 COQ7 EPN3 BMP5 ACTA1 NDUFS2 ITGB1BP2 AC108472.1 HSPB7 PMEL AC091551.1 LMOD2 HMGB3 HSPB3 HMGB2 ATXN1-AS1 HRH2 UPK1B CPT2 ISOC1 FAM83D RRM2 RBM38 DAPK2 PDE4DIP AL451069.1 PPP2R3B SHCBP1 CAT INAFM2 GALM CAMK2A CAMK2B AQP10 EMC10 LDB3 ACTC1 OXCT1 SPEG MAN1C1 PDE6B AC008966.1 CRYM
Up-regulated by SARS-CoV-2 in A549-ACE2 treated with Terfenadine from GSE154613 CHGB CHGA C2ORF76 POLR2J2 C2ORF74 RPL22 RPL23 BBIP1 UPF3A HN1 C9ORF43 HNRNPM LOC100506054 DYNC1LI2 MYL6 CAPN12 POLR3F TMEM126B RPL26 HSPA1A PSMC1 HNRNPC FLJ39051 RPL22L1 HNRNPD RPL27 OPTN RALB ANKLE2 STAU1 RPL11 RPL12 ARPC5L GPATCH4 HNRNPR TOB2 RPS4Y1 SAMD15 HOXA4 RPL15 RPL17 GBP2 APOL1 MUC6 S100A11 ZBTB7A TSPYL2 RPL41 TMA7 SF3B14 VAMP8 PSME2 VAMP2 SNAI1 H2AFY2 HOXB7 CFB RPL5 RPL6 RPL31 LOC550643 RPL35 UXS1 BCL10 C9ORF78 PHAX TMEM186 RPL23AP82 BLOC1S4 LOC100508120 HOXC6 HOXC5 RPL38 HOXC9 IER3 FGFBP3 SCARNA22 ATPIF1 TIMM21 MRPL22 MAGOHB MIR612 LETM2 NSA2 PIGF LYRM5 ADI1 TMSB15B C4ORF3 MYZAP MITD1 RBM8A RPS27L OAZ2 MED19 MRPL33 TMEM165 TRMT112 NDNL2 PITPNA-AS1 MED10 C6ORF57 GAR1 SNORA57 RRS1 PGAM1 G0S2 EN2 LOC283335 HSBP1 F3 LRG1 FAM104B FAM213A PTGR1 CTSL1 MRPL51 NGFRAP1 PSMA5 SPSB1 EBNA1BP2 TOM1L1 TSR2 PTRH2 LAMTOR2 C16ORF88 NDUFA12 LPCAT1 UBL5 EFCAB2 MYEOV2 ATHL1 PRRX2 RPS8 RASL10B RPS6 TPM2 RPS7 LINC00493 GOLM1 HNRNPAB NEAT1 PNRC2 C6ORF141 FAM227B MORF4L1 CSDA PSAT1 PDCD5 SRSF3 ARL8A SRSF4 SNRNP27 SRSF5 SNRPG CNIH4 VKORC1L1 FKBP2 PPP1R15A TCEAL1 PARK7 TCEAL8 TCEAL4 TCEAL3 SAP18 STX4 DTD1 HMGN3 LINC00476 HMGN1 HMGN2 IGFBP1 NOP16 FAM103A1 SHFM1 IGFBP3 LSM1 LOC643669 LSM6 NFKB1 PGD LSM5 NFKB2 LSM3 MAFF NCL LCN2 PIN4 BRI3 LOC100505817 SAT1 UQCRH VPS72 TNFRSF9 CCDC12 TSNAXIP1 MAP2K7 EIF5B RPL23AP7 GFPT2 C10ORF11 AHSA2 NDUFC1 CYB5A SNORD36A LOC642361 DNAJC8 ITGAE MFAP1 RPL37A FAAH2 EIF4E2 ENY2 GTF2A2 GTF3C6 NDUFB6 NDUFB4 NDUFB3 CELF5 ATP5J NDUFB1 CBWD2 BRK1 NREP APIP CBWD1 C15ORF48 ORC6 C6ORF203 KIAA1644 IP6K2 ACP1 CTNNBL1 COA6 NDUFA8 NDUFA5 GNRHR2 NDUFA4 PLEKHG6 CCDC59 RPL35A NDUFA1 NGF CFDP1 DNAJA2 DNAJA1 RAB13 OCIAD2 SNRPA1 TPT1 LOC100505738 C1R C1S C1ORF131 TMA16 LOC100130776 CACNG8 LINC00338 CCL2 POLR2J SEC11C POLR2K MRPS18C LOC92249 WDYHV1 UBAC2 LAP3 HSBP1L1 ULK4 ANP32E IFITM2 WBP1 KDELR1 LINC00085 WBP5 UQCR10 MST1L UBE2L6 UBE2L3 EXOSC8 MAGOH LOC150381 SNRPD3 CDC26 SNRPD2 SNRPD1 HABP4 LOC100506844 TCEB1 PAQR6 GADD45A PLA2G4C COMMD3 SLC6A12 C8ORF4 SNHG5 SNHG6 UCHL3 RPS27 SNORD104 NDUFAF1 NDUFAF2 CYSTM1 RPS25 BEX4 BEX2 ANP32B ANP32A ICAM1 TXNDC17 NUDCD2 C7ORF55 DZIP1L FTH1 RPS10 TMEM161B-AS1 DECR1 RPS14 ZRSR2 PSENEN FAM32A TSC22D3 NMI RAB33A COX6C VEGFA MRPS5 NME2 NBPF16 PTPRE PTMA IMMP1L RHOV TAX1BP3 SDCCAG8 TOMM7 HOTAIR COX7C MRPS17 DAZAP1 SDC4 STC2 LOC100129858 SOCS3 C10ORF91 SEC61B HTATIP2 QSOX2 FAM192A ASIC3 LYAR EIF5AL1 IL32 RANBP1 C21ORF15 AKR1C1 MRPS21 MRPS22 ZDHHC11 SVIP SPCS2 HNRNPA2B1 HNRNPH1 STAC3 SAA2 HNRNPH3 TCAP MRPS36 TRAF3IP1 DERL2 NUBP1 ICA1 PTMS CAMK2N1 CREG2 RAB8A CA11 UBE2I UNC5CL PDAP1 CWC15 PDGFRL AIG1 NUPR1 DNAJB11 SSU72 CHMP4A COX20 CHRNB1 RPL26L1 MRFAP1 BCCIP CWC25 TOMM22 TMEM242 TAF1D NPHP1 SPTSSA MAPKAPK5-AS1 RPP40 BUD31 TBCE MIR27B TIMM44 TBCA EIF2S2 MESDC2 EFNA1 IFT20 H1F0 LOC100506233 SELK DYNLRB1 CHMP3 SNORD22 LOC100506599 SRP19 DYRK4 COX19 SH3KBP1 RPP30 MRPL45P2 PLAU DPY30 SRP14 ZMAT2 RBMX2 FAM162A GOLGA6L5 LRRFIP2 COX14 CD99 POU2F2 SRGN NCBP2 RPS3A BFAR SENP3 IRF1 NFKBIA LOC100507463 IL6 RCN3 ITGB1BP1 IL8 NDUFS6 NDUFS5 RER1 NDUFS4 ASMTL-AS1 ITGB1BP2 VIMP NNMT PINX1 HSPB6 CKS1B TNFAIP3 PLD6 CXCL2 DBI CXCL1 ERICH1 TNFAIP2 CXCL3 SMIM7 U2AF1L4 CXCL5 LOC646278 SCIN HEBP1 LOC100506123 IRAK2 FGB TAF15 FGG TAF13 GIP SOD2 FAM167B NPHS1 RGS10 DDIT3 S100P SSBP1 ACIN1 DYNLT1 RSPH1 PFDN6 DCTN6 DDX27 MEA1 WHAMMP1 SOWAHD TM2D1 YBX1 DMKN RPS4X CHCHD7 CHCHD1 KLRG1
Down-regulated by SARS-CoV-2 in A549-ACE2 treated with Terfenadine from GSE154613 ZNF165 ZNF281 LOC100289187 SYTL5 DEPDC1B ADPRM NUP98 RFX7 FEZ2 KIAA0368 UQCRC2 GLA NHLRC2 CDK17 NUP205 CYFIP2 MTMR4 GABPB1 SSFA2 SPDEF GNG5 SPOCK3 FAM120C LOC100128288 CEP97 SF3B1 ZNF148 RNF111 ZNF266 ACTL6A VPS13B EXOC6B GPN1 ZNF17 FERMT1 AR HSPG2 LPHN2 FAT3 CEP63 HBP1 VAMP3 ANAPC13 ZNF134 FLG ZNF132 BAZ2B HIF1A WDR47 SMC2 ZXDB FAM134B PCDHA2 PDGFD ZC3H12B FIGNL1 ADNP2 RPL39 PRKACB BARD1 ANXA3 RMI2 LRRC28 TIMM23 GLUD1 CENPF KAT2B AFTPH HEATR5B PQLC3 HEATR5A ARF4 SNORA61 ABHD5 TFCP2L1 CLTC ZNF43 IQGAP3 SPTY2D1 LRRC3 MED13 KIAA1009 LDHB ERMP1 MED14 CEP55 C5ORF42 RNLS 5-MAR WDR19 ELP2 GTF2H5 BAAT KIAA0196 GATM RFWD3 KIAA1279 SRRD DLD ZNF697 CDKL2 ZNF211 HTT SPIN3 ALMS1 FMN2 SMG8 FSTL4 HLA-DMB WRN MINOS1 TCTN3 TMEM47 CARNS1 SBDSP1 MDH1 TMEM14A ANKRD50 TMEM14C PAIP2 ZNF443 ARMCX5-GPRASP2 SEC24B ANKRD28 SRD5A3 ATP11B MSH2 RAB31 CNOT1 TTC30A RNF182 ZNF559 ZNF558 ROR1 UTRN PVRL3 NBAS ZNF551 SLC27A2 ZNF671 TUSC3 CASC5 GPR64 FIGN PYGO1 SLK FLNA RBBP7 MAP3K7 TECTA FANCI TRPC6 FANCM HPS3 PIAS1 PDCD6IP FBXO34 DMXL1 FBXO30 IGSF11 METTL23 METTL25 SYNJ1 ZNF419 BIRC6 ZNF658 ADNP BMP2K CERS2 ZNF773 ZNF530 NOTCH2 ANKRD17 IRS1 ATP8A1 UQCRB IPO7 KRBA2 IPO5 GLIS3 C1ORF50 TPR AMDHD1 MED31 ESD OSBP ABHD10 KIAA0895 BTBD3 SESN3 EIF4EBP2 HACL1 TXNDC9 PLS3 ZNF761 ACTR3 DIS3 PLCH1 APAF1 HMGCS1 LANCL1 TMLHE MSL2 SON SP3 PIK3CA CPD SP9 MCM2 CRYBG3 SLC25A3 FOCAD C15ORF41 GMPS NDUFB2 NPAT RAD21 ATP5B PSTPIP1 PLRG1 LOC643201 KIAA1524 ZNF627 ME2 ME1 NOP58 C8ORF59 SPAG8 OXR1 ASCC1 FEM1B RALGAPA1 PRC1 FBXL17 FBXL14 ZFP90 RAD51 SYT13 ATXN10 POLR1B ZNF616 ZNF614 DTL KDELR3 TRIM32 ZNF611 ANAPC1 MMADHC SLC25A5 MTCH2 FRRS1 MCM8 UHRF2 PRPS1 PTEN KIAA1432 MKI67IP MYLK4 ZNRF2 AP1G1 HECTD1 EFR3A ZNF608 UBQLN2 10-SEP UBQLN1 LRRC8C FBXO9 SPG11 POLR2M TMEM170A ACSL1 NBEAL2 ZW10 SPATA18 APC BRE CDC16 CORO7 TMEM87A RSC1A1 SLC35B4 SLC46A3 CCNI CCNF AKAP6 CDKN2AIP PEX26 UXT ZNF706 ZNF704 IARS2 BSN E2F7 SNHG1 ALG9 ALG8 CMC4 INTS4 SLC11A2 XRCC4 EAF2 BROX PLA2G4A DDIT4L COMMD7 PUM2 ZZZ3 INTS6 ATP6V1B2 FUT10 FAM89A SLC22A3 MGST2 TXN LGALSL GSPT1 DMBX1 C14ORF2 CYP2R1 ARL6IP6 MIR4664 TSPAN3 DIRC2 SEC31A SLC33A1 SLC35E2 NCOA4 STRBP SLC10A4 LINC00174 KLHL2 TFEB SORCS2 ITFG1 RGMB KLHL9 COPG2 MRRF ATPAF1 TLR4 COX7B KIF11 STRAP TMEM185A INTU SLC35F5 SLC44A1 PAK1IP1 KIF15 IDE NMD3 BRCA1 NEDD9 VLDLR RAP1A NNT CCT4 MON2 FAM46A MCCC2 AP2B1 QPCT PROX2 MLH3 ANO6 RANBP6 RTN4IP1 TRIP12 PPYR1 CD46 NUPL1 HEATR2 PRIM1 NUP188 AKAP11 XPO5 CNIH XPO7 SGK196 GCA TRAPPC11 OCRL CNOT10 ATP1B1 TUG1 PCDHA12 EEF1A1 CYP24A1 BUB1B GPRIN2 KIF4A SPINK13 SBDS PCNA DPAGT1 ZFAND5 YARS2 NUP160 NKD1 ATP2C1 PDPR ZNF81 KIAA2018 DCLRE1A USP47 TTC37 SMAD2 STIL DNAJC13 NUP153 SLC30A1 TDRD7 NUP155 UPK3B DARS2 NR4A3 OXA1L CCNA2 TBCK SRPRB GEMIN5 STT3A GEMIN6 TAB2 SELT MATN3 ATP6V1A DDX1 SPPL2A LPP PKD1P1 AKR7A3 RDM1 MAN2A1 HADH USP25 RBM15 C14ORF119 JAGN1 USP24 PPP2R5E NAV3 TGFBR2 ACVR2A PJA2 ELF2 FER NUP54 FAM72A PDE3B LOC440434 NDUFS1 BMPR1A KDM5A KDM5B RTN3 RTN4 AASDH USP32 C9ORF163 PIK3R4 NR2C1 PHTF1 FAM188A UQCRFS1 RPS6KC1 FAM83D RBM14 SNORD31 RBM39 ZNF189 ATF7IP RRM2 CCDC176 DAPK1 RRM1 POLQ ZNF180 FNDC3A FAM179B TBC1D5 NUP35 SLIRP PALM2 VDAC2 RBM45 USP14 AQP11 PCDHGB3 ATP2A2 SLC4A4 NR3C1 ADD3 CRYZ CAND1 SPRED1 RPS6KA6 MAT2A TDG
Up-regulated by SARS-CoV-2 in A549-ACE2 treated with Trifluoperazine from GSE154613 STARD3 HAGHL BTBD19 RPL23 GATAD2A SOX12 HN1 SCRIB GRIN2D C20ORF24 WDR81 ARMC5 HSPA1A RBCK1 RPL28 RPL29 RABL6 SF3B4 AP5Z1 RPL12 TESK1 EWSR1 TPGS1 ZMIZ1 MICALL2 AKT1 CLPTM1 SAMD1 FBRS RPL18 SAMD11 JUND ZBTB7A TSPYL2 DMPK TIGD5 ABCA7 SLC16A13 TMA7 NR2F6 KLF16 HCFC1 GIGYF1 SLC6A6 EHD2 BCAM FASN PLBD2 C19ORF24 PRKD2 SF1 PRR12 FARSA HOXB7 TSTA3 RNH1 MEPCE TTYH3 RPL35 LRPAP1 RPL8 CHTF18 CYB5R3 ALKBH6 RAVER1 FASTK IER2 RPL36 PIP5K1C RPL38 JUNB ZBTB7B IER3 ZNF362 JUP ATPIF1 SPHK2 SSR4 SAMD4B SIRT6 JOSD2 GIPC1 MZT2B MMP15 INF2 NCOR2 MMP17 FXYD5 ZNF358 ZNF598 GRAMD1A ARF1 FLII MFI2 C1ORF35 AKAP17A OAZ1 MED16 BBC3 TRIM8 RHPN1 DLGAP4 CIC BRD4 WDR18 MEF2D MBD6 G0S2 NR1H2 MBD3 LDOC1 TUBB4B SOLH CTSL1 SPSB1 COL4A2 NFIC TAOK2 PTRH1 ZNF219 TSR2 ZNF579 LAMTOR2 PPARD ZNF213 RPLP2 TCF25 RPLP1 NOC2L FSTL3 KRI1 CENPB GLI4 FAM127A ZNF205 TNKS1BP1 ZNF444 ZSWIM4 FBXW5 SEMA4B RNF44 ATHL1 S100A3 RPS8 ZBTB17 TPM2 GTF2F1 CHERP LRFN4 ATXN2L DMWD ZYX ARL8A FKBP8 PLXNB2 LRCH4 SNRPB GHDC AGRN COL16A1 NFIX FKBP2 SRRT PPP1R15A FAM129B PLOD3 ATN1 METRNL ZFP36 DDRGK1 NACC1 TCEAL4 TUBB3 TCEAL3 CEP250 ZNF428 NDOR1 SLC16A3 MAP2K2 TMEM132A IGFBP4 TRAPPC5 EEF2 LSM6 PGD DGKZ DUSP23 MED25 LSM7 PITPNM2 TMEM11 CDC42EP4 DRAP1 EIF4G1 FSCN1 ERF MAFK PIN4 ZNF777 FTL PHLDB3 DNMT1 ZNF775 GLYR1 MAZ SLC38A10 CORO1B HSPBP1 RHOBTB2 STK11 BAG6 BTBD2 ANKRD11 PIM3 C1QTNF1 MEN1 MAP2K7 PRRT2 KSR1 OSGIN1 EDF1 RAD23A REXO4 TNFRSF1A VSTM2L BCL3 PPP1R12C BCAR1 ZC3H4 ZC3H3 MLLT1 PTPN23 FOXK2 FOXK1 ATP5I GTF3C1 PELP1 RHOT2 PPP6R1 ZNF629 DVL1 ZNF865 NCKAP5L COL27A1 SMARCC2 SMOX ADRM1 FBXL19 HDGFRP2 C1ORF86 LENG1 CDC34 RAB13 KCTD13 EIF3G SLC25A6 CSNK1G2 PFKP TPT1 CEBPB SRC PLEKHH3 MGRN1 ITGB4 UHRF1 ECE1 LENG8 POLR2A MIEN1 SLC25A22 CCL2 CSK POLR2J STK32C FLJ22184 CIZ1 ACTN4 KRT8 MFSD12 PEX14 SRRM2 ULK1 FLYWCH2 PFN1 IFITM2 PRCC KDELR1 WBP2 CPNE7 WBP5 LRP5 UQCR11 UBE2L3 BSG SNRPD1 ZNF703 RAB11FIP3 NUMBL INTS1 TALDO1 VASN RPS27 ARFGAP1 MC1R POR CYP2S1 WNK2 PAF1 CES2 PPP1R18 PIEZO1 NUMA1 ZNHIT1 RPS15 C7ORF50 RUSC2 SNRNP70 MICAL1 FTH1 CCDC97 TNRC18 ARL6IP4 RPS14 TSC22D4 CNFN MLF2 NME2 PTMA IMMP1L ID3 CALR MEGF8 COL18A1 UBXN1 RAB5C DAZAP1 FBF1 C17ORF70 SOCS3 SBNO2 SAFB2 SCAND1 KIF1C CTSD C9ORF114 GAA UBALD1 PRMT1 DOHH MYO9B HNRNPUL1 KIF26A PACS2 CTTN PRPF31 APBA2 ENGASE NPDC1 DBN1 TRIP10 CSTB TOR4A NUBP1 AP2A1 PTMS SIPA1L3 MNT SDF4 RAB8A TBC1D22A ANKRD13B TGFB1 CA11 UBE2I G6PD SYCE1L PRAF2 ATAD3A PDAP1 EEF1A2 UBE2S COL5A1 EHBP1L1 SSU72 CDK2AP2 LRP10 ALDH16A1 NOL3 RRBP1 PHRF1 FBL LMNA BAHCC1 GPC1 HSF4 CAPN1 PAK4 ZGPAT PDIA4 MLL2 ATP6V0C MLL4 ARHGEF18 CCDC137 DDX54 MINK1 ASPSCR1 TIMM44 CYBA GLTSCR1 TBCA SUPT5H GLTSCR2 COL6A1 COL6A2 MAP7D1 CHMP2A CLASRP CCDC130 MXD4 CCDC124 MIDN LGALS3BP SEZ6L2 PPP1R9B C17ORF96 TGM2 RGS3 PALM ALDH3B1 ZC3H18 ATP6V1F BCL9L PCSK1N SBF1 CD99 ZFHX2 CBX6 LIMK1 SETD1A MKL1 ARAP1 DNM1 EPN1 MEIS3 DNM2 SAFB NFKBIB CLCN7 NDUFS8 HOOK2 NDUFS7 AKT1S1 NDUFS6 COL7A1 PLEC NAT8L LUC7L2 COPE NNMT AGAP3 DTX2 ERICH1 CHD3 HSPB1 LMNB2 PLD3 RAI1 H2AFJ SNAPC2 MFSD3 BCL7C ISOC2 KDM6B TAF15 LMTK3 LEPREL2 USF2 TRAPPC6A PPDPF RBM42 FAM50A CERCAM ACIN1 SSBP4 PFDN6 DDX27 KRT81 PKD1 PRKCSH LDB1 LAMA5 WIZ YBX1 EHMT2 SLC4A2 ARHGDIA SIX5 PCED1B CYTH2
Down-regulated by SARS-CoV-2 in A549-ACE2 treated with Trifluoperazine from GSE154613 PCGF5 WDR75 DEK IFT80 HSPE1 PRKAB2 SCAMP1 ARMC1 RFX7 FAR1 CHIC1 RNF2 NUP205 CGGBP1 LIN9 PON2 NCAPG GLS SLC5A3 TFPI UACA UGP2 WDR72 SF3B1 NDFIP1 PRKCI FZD3 ATP6AP2 ABCA5 ZNF12 FAM111B EIF5 VAMP7 RAD17 HBP1 VAMP3 ANAPC13 GMFB SNORA40 C5ORF24 ATP5C1 GPR180 EPRS SMC4 ARPP19 RPL7 SMC2 LIPA HSPH1 PPP3R1 ALCAM FIGNL1 RPL39 PRKACB SRP9 LYPLA1 SSR3 LMBR1 C6ORF62 LRPPRC CENPI HEATR5B HEATR5A PAFAH1B1 GAS5 EXOC6 CENPQ C5ORF51 TMEM106B ARF4 CHM CLTC ZNF518A C6ORF170 MTDH MED13 MRPL42 ERMP1 EXTL2 BCLAF1 RFK EMB PBK ZNF107 MIOS CEP55 SLC18A2 CEP57 DLGAP5 FAM160B1 ATAD2 MBNL2 TRNT1 KIAA0196 TM9SF3 TM9SF2 RYBP ABCB10 NUDT21 PSMA4 PSMA2 TMEM56 KIAA1279 AGPS ETNK1 JKAMP TAOK1 DLD CLDND1 LGR4 ATL2 HEXB SNX13 RARS KIAA1033 PIGW HSPA13 TMEM48 IMPA1 WRN MINOS1 RNF139 SMCHD1 TMEM47 MDH1 CHML ANKRD50 SEC24A AGTPBP1 ANKRD28 ZNF680 AGL ATP11B FBXO11 HAT1 UBLCP1 SYPL1 PHIP PVRL3 ARL8B GOLGA8B SLC25A40 TUSC3 FAM35A CASC5 PLOD2 FAM214A RAB23 LAMP2 PTAR1 NBN CSE1L ZUFSP KPNA3 KPNA4 FANCI BIVM SLC38A2 GLMN NEK7 BNIP3L LRRC40 FANCB TVP23B PDCD6IP FOXN2 DMXL1 FBXO30 METTL23 MED21 BIRC6 TMEM19 RSL24D1 LRRC58 UQCRB ANKRD12 FAM107B AK3 LTN1 RLF FGF2 IPO7 IPO5 ARHGAP5 MED31 ESD BTBD1 ZNF529 PAPOLA TXNDC9 ZNF765 PLS3 SLC38A6 ZNF761 ACTR3 DIS3 HMGCS1 LANCL1 NDUFC2 SP3 CDK6 PIK3CB MFAP3 ZNF638 CDK1 CEBPZ SOS2 ARL4A IREB2 CRYBG3 NUFIP2 GLO1 LRRK2 UBR3 NPAT RAD21 ORC5 METTL15 DRAM2 TNPO1 PLRG1 KIAA1524 SLCO1B3 ME2 ME1 SMIM13 C8ORF59 RALGAPA1 ZBTB33 MCOLN3 PTBP3 ATXN10 MGAT4A CD109 ANAPC4 7-MAR MMADHC EIF3E LOC100506710 SEC23A RNF14 UHRF2 NCKAP1 PRPS1 KIAA1551 ETFA PTEN MKI67IP HSD17B12 HSD17B11 PIK3C2A FYB MALT1 AP1G1 EFR3A HECTD2 POLR2B FBXO5 10-SEP PGM3 UBQLN1 ITGAV ARL5A CTNNAL1 SPG11 SLC35A3 SLC35A5 GIN1 SLC35A1 PPA2 LACTB2 CCP110 SUB1 TFAM PRKRA DNA2 CALM1 TRIM13 TMEM87A SLC35B4 CMAS KDELR2 RAD54B UHMK1 UXT C1GALT1C1 DHX36 CDC27 IARS2 CPNE3 B2M FKTN NARG2 TRMT1L ALG8 CMC4 PAQR3 XRCC4 USMG5 SUCO PUM2 ACER3 STAG2 AIMP1 PTPLAD1 DHX29 SSX2IP FBXL5 ITM2B SLC22A3 TXN MGST1 GSPT1 EPM2AIP1 TMPO C14ORF2 DHX15 MBTD1 TSPAN6 TSPAN3 AGFG1 TRPM7 PTGES3 PRPF40A KLHL5 RAP2A ITFG1 ANLN RHOQ RAP2C KITLG POC5 KLHL9 CCNG1 TAX1BP1 ATM G2E3 DEPDC1 EEF1E1 ATR TRAM1 AHCTF1 C2CD5 STRAP PAK1IP1 IDE KIF14 NMD3 BRCA1 TWF1 SLC7A11 SBNO1 SNX5 ZMYM2 SH3BGRL HLTF ERI2 TMED7 RANBP2 SUZ12 C1GALT1 SACM1L FTSJD1 TTC3 CREG1 RAB11A ANO6 MIB1 PPP2CA DPY19L1 SPCS3 NEDD1 DPY19L3 CD47 CD46 LOC201651 MRPS35 AP4E1 TUBD1 NUCKS1 XPO1 XPO4 CNIH BCAP29 CCT8 LOC401397 MAP4K5 GEN1 MMGT1 GCA KLHL28 ARHGAP29 SDHD ATP1B3 TUG1 ALG10 TMX3 CAPZA2 GPD2 DENND4A SBDS BRWD1 MPHOSPH9 BRWD3 PCNA ZFAND6 TOMM20 ATP2C1 MANEA CAPN7 TWISTNB EMC2 PERP KNTC1 USP47 TTC37 SMAD5 CCDC132 DESI2 VTA1 SLC30A6 SLC30A5 DNAJC13 FAM199X DARS2 SDCBP AZIN1 PAN3 TBCK KIF2A DNAJC10 OSTC STT3B CHMP2B TAB2 SELT ATP6V1A GOLT1B COPB1 SPPL2A PPIP5K2 USP53 SACS GALNT7 PAICS TIPARP NCBP1 GALNT1 TTC19 RCN2 ARL2BP ATP13A3 RTN4 TSEN15 DDX3Y YWHAB USP34 RAP1GDS1 UBA6 CHD9 NR2C1 15-SEP RPAP2 SPAST SCFD1 UBE2Q2 YWHAQ MFSD1 UQCRFS1 LOC100507217 ECT2 ZNF189 TMEM30A RRM1 ZNF181 FNDC3A SGPP1 U2SURP KCTD9 VDAC2 MATR3 NUP37 ABCE1 USP14 ASNSD1 ABCD3 HMGCR MSMO1 HSPD1 NR3C1 CAND1 SPRED1 RPS6KA6 MAT2A RPS6KA3 TDG GNA13 POC1B POLI SCYL2
Up-regulated by SARS-CoV-2 in pancreatic organoids from GSE151803 LOC102724124 EVA1A EML3 CFC1 ASPHD2 FEZ1 PCDHB2 TRIP6 GPD1L HSPA1A FLJ45743 VIP PCDHB9 HCP5 ANKLE1 PRSS2 RPL10 SERPINE2 LOC101929748 LOC101928891 FAM169B ADCY8 ACCS ASCL1 APOL6 TFPT LSM12 RPL17 HES1 APOL2 HES6 SAMD11 PLK5 LINC00673 PLK2 CEL HDHD3 RIPPLY3 GJB6 SERPING1 HOXB4 C19ORF25 SIVA1 PSME1 PKIG CFB PID1 CELA3B HPN C1ORF173 GNS TPTE2P1 HPX ANAPC11 C2 C3 HTR7 CYB5R4 ZC3H12A TDO2 BLOC1S3 HMOX1 SFN JUNB PROM1 IER3 PPAPDC1A GSDMD WDR38 RIPK4 ROM1 SPHK1 NFATC4 TACR1 TMEM173 CP JOSD2 LYZ MMP11 TMEM37 MZT2A ECSIT BHLHE40 PLEKHM2 MDFI C11ORF31 SERPINA3 SERPINA1 GRAMD1A SLC18B1 SERPINA11 ADM TMEM163 C12ORF44 SDSL GPR111 LDHA GPR115 TEAD4 CCDC162P MEF2C CDKN2A STAT3 G0S2 DHRS2 SLC8B1 GALNT9-2 NUDT22 SPSB1 SDHAF1 PLEKHO2 LAMTOR4 ANGPTL2 MSRB1 SPEF1 KCNA4 TMEM51 LOC101928111 PRSS22 ADAMTSL2 MIR503HG PSMB8 NAMPT GPNMB TSPO JAK3 CSMD2 SEMA4B SLC39A1 ATHL1 S100A3 CRYBB1 RASL10A TAP2 TAP1 LRRC61 AGT NEAT1 RNF144A-AS1 SLC9A9 SLCO2A1 SNRPB CHRM3 LINC00242 SERTM1 SLC27A1 C11ORF71 CSF1 PROS1 GLT8D2 TNF PLOD2 PAPSS2 RAB20 ITPRIPL1 ABLIM2 LAPTM4B ZFP36 BCL2L12 ABLIM3 CDH3 TUBB3 HAS2 GRAP2 SLC16A3 IGFBP2 LINC01122 CISH FST ADRA2C PTGES2-AS1 MOB2 CDC42EP1 FTL NRSN2 KCNE4 CNP LOC102724312 LOC102723465 CHRD KIAA1751 GPR85 OLFML2B ELFN1 OSBPL10 VTN EFEMP1 ABHD11 RAB42 MMP25 AMDHD2 TRIM69 EFHD2 GYG1 PIM3 BMF OIP5 C1QTNF1 SLC38A4 SEMA7A IL13RA1 PLXNA4 CPA5 KCNJ5 GPX1 ITGA1 GLYATL2 GLYATL1 DTX3L SPACA6P YDJC FOXL1 TNFRSF1A ARL4D BCL6 LOC100129223 MFAP4 FAAH2 BCL3 ECHDC2 KCNK1 CBLN4 TNFRSF25 LINC00324 PLEKHF1 CNTNAP1 TRADD NLRC5 RAP1GAP SPR RDH10 C10ORF10 EMILIN1 ME3 SMOX UNC5A KCNK15 BOLA1 FOXJ1 ADCYAP1 TST TXNIP MTFP1 SLC25A6 FLT1 CEBPD COL15A1 PPM1N ECE1 NOB1 HHEX LOC100130417 CCL2 BAK1 UPP1 IL1R1 PHYKPL FBXO2 KRT8 EBF4 TM4SF1 MTUS1 SST NINJ1 LPAR6 LOC102724800 FLYWCH2 NEIL2 CDO1 IFITM2 IFITM3 LRP4 CBLC HS6ST1 AQP3 UBE2L6 PSMB10 C4B SUSD4 B2M CER1 HABP2 XBP1 GADD45B GADD45G HLA-C HLA-A HLA-B HLA-E MC1R VNN1 VNN2 VNN3 KLHDC8B SMTN PPP1R1A FLJ38668 SNHG11 ADCK4 SPON2 TSHZ3 LOC102723863 IFI30 IKZF4 ICAM1 MT2A SOX1 NKAIN4 LGALS1 RPS19 TNFSF11 ASL FAM65C A2M FFAR2 SIL1 SYNPO SCN1B CCR10 PTGES2 CCDC114 PRPF40B BTN3A3 ZNF503-AS2 C17ORF62 RHOC TLR2 TFAP4 CEACAM1 TPPP3 KRT19 ID1 KRT18 RPUSD1 KRT15 ID2 VWA1 TFF3 CLIC6 C2CD4A C2CD4B TWF2 C8B SOCS3 SBNO2 SOCS1 KCNT2 LOC100287413 SEC61B TM4SF18 TMEM176A SYK GAD1 TMEM176B MIAT ZDHHC12 THOC6 PODN TPST2 B3GNT8 KIF26B B3GNT7 FAM195B TSSK3 FOXA3 IL24 FAM69B CRYBA4 NUBP2 MIR7-3HG CXORF40A RP11-277P12.20 SLC22A31 UBTD1 TGFB1 HSD3B7 NPNT CD72 UNC5CL KLHL25 SPINK1 EEF1A2 ELMO1 CNTN5 PPIB LRP10 ALDH16A1 TYMP MPG SUCNR1 LOXL4 SCN7A C1RL ROMO1 S1PR5 CARD11 TGIF1 PSPN CYBA SSH3 PDIA5 EFNA1 TMEM115 DLGAP1-AS1 SELM CHMP6 C5AR1 CCL4L1 CALCA SLC2A1 LGALS3BP JADE1 COX7A1 ETS2 RP11-538P18.2 TGM2 RGS4 UBB UBD ZNF385D PMAIP1 FLOT1 A4GALT EGFL7 NFKBIZ DTNBP1 IQCD LAMB2 IRF2BP1 MMP9 SSTR5 SEPT4 GALK1 IRF1 NFKBIA IL7 ELF3 RCN3 EEF1D IRF3 MAP6D1 IRF7 RP11-10A14.5 COPE HAPLN1 NNMT ABCB1 UBA7 CXCL2 AGPAT2 HK1 CXCL6 CXCL5 LRRTM1 SYNGR2 CALB2 GDAP1L1 C9ORF16 LRRTM2 AOX1 CA8 SCN3A MAN1A1 WNT4 GALNT9 DACT2 LOC101927777 IL15RA DAPK2 EYA2 NEGR1 MIIP PCOLCE S100B KLHL41 THAP3 SOD2 PLA2G16 PTHLH THAP7 CLDN4 TRAPPC6A C19ORF66 PTX3 AURKAIP1 TRIB1 TSEN34 MVP AQP10 THBS3 RND1 GRM4 POLD4 PRRG4 CBS C19ORF70 LOC100996634 SCN5A ABCD1 MAPK4
Down-regulated by SARS-CoV-2 in pancreatic organoids from GSE151803 CHGB UNC13B CACNA2D2 CACNA2D1 SERPIND1 DICER1 RFX3 BTBD11 LOC101928641 GRIN3A EML5 ASB9 RFX6 NHLRC2 CPEB4 FSIP2 CPEB3 C2ORF72 AHNAK COL12A1 SYNPO2 ADCY2 SLC5A3 PREX2 SPOCK3 ZDBF2 VIM-AS1 PLCE1 ANKS1B GPR158 KLF12 ST18 PHC3 APOOL VPS13D ABCA5 PRKCE VPS13C PRKCA VPS13A KIAA1244 LOC101927331 FAM135B KCNMA1 HECW2 NOSTRIN FAT4 FREM2 DZIP3 KDM7A CEP85L NAPEPLD PKI55 RAPH1 MYSM1 LIPC KIAA1109 RP5-1033H22.2 ZC3H12C PLCG2 GPR179 LMCD1-AS1 DUSP5 COLCA2 DUSP4 SHPRH ZNF483 IL10RA TET1 PAX6 PRSS12 FAM126B RNU2-2P CENPF TTLL7 TTLL6 KAT2B BHMT SLC7A8 HEATR5B FXYD3 PRPH2 FXYD6 RAPGEF4 RAPGEF5 RET KCNC4 CYMP ZNF518A TRIM2 IQGAP2 UGT8 ATXN7 TIMP3 TCP11L1 SLC18A1 C16ORF54 SLC18A2 C5ORF42 WDR17 TMOD2 CDKL5 ZNF462 PPARA STAT4 ADAM12 STXBP5L RNASE1 TRNY PLCB4 ANGPTL7 MAP1B TAOK1 FABP1 PHLPP2 SMG1 GCNT1 KCNA3 TCF24 ADAM23 SLC9C1 SLC8A1 LOC102724230 LYST TMEM144 EEA1 NDST3 GCNT4 NEFM CSMD3 ANKRD29 ZNF441 C3ORF80 PLXNC1 AGL DIO1 MITF DCDC5 GPR50 LOC101927279 IAPP KAT6B OSBP2 DGKG PARK2 PHLDB2 SEMA5A TUBB1 RBM5-AS1 FAM129A ZC3HAV1L CLU LCLAT1 FRY ZBTB20 NPAS4 SLC9A2 FGD4 CYSLTR2 UG0898H09 PTAR1 MACROD2 RP11-242D8.1 STOX2 NKTR C1QL1 TRPC7 C11ORF87 TRPC4 ZNF658B CRNDE ESRRG NBEA C1QL3 MOB1B DMXL2 BIRC6 MAP3K15 DGKI ZNF652 C21ORF62 DPP10 LRRC58 CHODL ATP8A1 BZRAP1-AS1 CLSTN2 KMT2C AK5 MSI2 GPATCH2L RORA ZKSCAN8 SESN3 CEP350 LEPR SRGAP3 MACC1 ADAMTS20 GPR98 NEB USH2A CDC42BPA KY SEZ6L DAB1 LANCL3 NF1 OGT LCOR AAK1 EIF4E3 CRYBG3 NLGN3 C21ORF88 NLGN1 ONECUT2 LOC102724851 UBR3 CYP3A5 ITPR1 UNC80 LOC102724733 ZNF507 PHACTR2 FNIP2 KIAA0319 MDN1 WASF3 LOC728755 MYO16 KCNH7 RALGAPA1 ZBTB38 SPAG5 KIAA1549L KLF2 LOC101928069 MYO1A ASPH ASXL3 KCTD12 PKHD1L1 EGFEM1P BDP1 CD101 SLC47A1 LOC102724873 DDX60L PPM1L SYNE2 THSD4 TTR SGCD PSD3 NHS ITGB8 DYNC2H1 ENTPD3 SFMBT2 PCDH20 SLC12A2 NBEAL1 MALL FRAS1 APC XRN1 CTH MT1G TMCC3 EPHA4 CPNE9 LRP2 ADH1A AKAP9 NDNF HS6ST3 RAB11FIP1 RAB11FIP2 NIPAL1 LOC101060391 PEG10 FAM63B N4BP2 FER1L5 ST6GAL1 RAB39A MYO5A ACADSB ANK2 WNK1 MEP1A VGLL3 MRAP2 LPGAT1 MACF1 SPON1 TMTC1 RCBTB1 LPAR1 GOLGA4 SYNPR APOM SLC9A7P1 ANPEP PDE2A ARSJ PDK4 KIF21A PIEZO2 KCNN3 TSPAN1 ZBED6 TSPAN2 RALGPS2 SOX5 PDK3 APOB GABBR2 LINC01021 RHOH MSS51 MTSS1 ALDH6A1 PTPRD PDIK1L ID4 FAM20A ALDOC MEGF9 AKR1B10 VWA8 PCSK2 CSRNP3 PTPRT SLC44A5 PTGDR2 MAOB STC1 SLC7A14 SCAI TMED8 LINC01004 CGREF1 FAM46A MYO9A MPP7 AC009501.4 KIT TCEA3 NEK10 LPPR5 APBA1 KIAA1958 LPPR1 RYR2 PTGER3 DIRAS2 FHOD3 GDPD2 AIF1 PCLO AC093375.1 EPB41L4B SCML2 AKAP12 RPPH1 EPB41L4A CTNNA3 CORIN REV3L GUCY1A2 PRLR DENND4C OSR2 VWDE LIFR GCG LMO7 TARBP1 ATP1B2 TMEM131 HS3ST5 ARHGAP26 COLQ GPRIN3 PCP4 DOK6 GPD2 STEAP2 GALNT13 CHRNA2 KLB PPP1R26-AS1 KDM1B SLC1A1 PRUNE2 KIAA2026 TMEM245 PCNX SPTSSB MYH10 GAS2L3 CLASP2 ARHGEF12 BPTF TTC37 SLC30A8 ACBD7 CASR EPHX1 SLC30A4 HGF EPHX2 LOC101928704 ARID5B DNAJC13 INHBB SLC30A1 HELZ NR4A3 NR4A2 DIAPH3 TMEM236 TMEM117 MAP7D2 CDH12 COL21A1 GCLM AMPH FBN2 ERO1LB CACNA1A DOCK9 HMP19 LPP PLCXD3 LOC151760 SCGN SYDE2 RGS6 KCNV2 PDZD3 PDZD2 CDH22 COBLL1 STARD4-AS1 UTP20 SACS QSER1 RGS7 BCKDHB ABCC4 ABCC2 ABCC8 USP24 MKL2 NAV2 SYNDIG1L MMRN1 FEV SNORD44 TSGA10 ABCB4 TTC22 USP34 CHD9 NRXN1 NID2 AFF2 DPP4 AFF1 C7ORF76 LONRF2 OPCML DCC FGG PDE4D LGI3 ANXA13 OPRK1 ATP2B4 KCTD3 ATP2B2 ATP2B1 PEAK1 DCX DAAM1 CLOCK LOC101929604 KRT81 LDB2 ACVR1C NR3C1 FAM154B IGFBPL1 FAM178A CLMP RPS6KA3 EPS8L3
Up-regulated by SARS-CoV-2 in liver organoids from GSE151803 MX1 LOC101928527 DEK UPF3B TAAR3 BTBD10 PSMB9 WDR78 GTPBP4 MTAP MARCKS OSTM1 GS1-251I9.4 LINC00649 CLNS1A RABL5 SNORA8 BACH1 TFPI HNRNPR RNF6 UACA APOL6 MSANTD3 TGS1 GBP3 MTA3 APOL2 APOL1 ZNF267 ZNF146 AFAP1L1 DNAH14 RPL41 PLK2 KLF10 DNTTIP2 BAZ1A MINA PHKA1 COQ10B ZSCAN16-AS1 PLSCR1 PLSCR4 MSL3P1 CEP63 PSME1 GNE ZNF136 LYPLAL1 CFB SET CDC42SE1 CFI BCL10 IL10RB-AS1 LOC101929761 MRPL18 ENO1 ALKBH8 HIF1A C3 ZC3H12A LYPD1 IER3 IKBIP TPI1 NSUN3 CCL20 ANXA5 TMEM171 GNL3 DIEXF VWA5A RNF149 TMEM33 BHLHE40 ZNF833P GPR128 CEP41 ZNF597 ACHE ARPC1A SERPINA1 ABHD5 RBM8A LITAF MRPL33 HSPB11 APOLD1 LDHA PANX1 CASP10 C6ORF57 SSR1 SSR2 RIPK2 ZNF222 UTP6 ZNF582 STAT1 IFNGR1 UTP3 KTN1 SERPINB8 LRG1 TMEM154 NUCB2 GOPC PIGR ERO1L HSPA13 IFIH1 PSMB8 ENSA SBDSP1 CHML HLA-DMA IKBKE ZIK1 SRSF12 SLC39A1 ATHL1 SUPT16H S100A3 FKBPL RPS6 TAP2 VRK2 GTF2F2 SLC9B1 PNRC2 SLC9B2 MRTO4 MSH3 MSH6 SRSF3 ZNF438 ZNF559 SNRPG IL6ST PDCD2 MIR210HG ZNF674 TMF1 ODC1 RUVBL1 NRAS STX6 USP1 LEO1 RBBP8 TXNL4B AC093391.2 MAP3K8 MFN1 SLMO1 IGFBP1 SLC38A2 SLC15A3 NEK6 IGFBP3 TTC21A TNFRSF10D LOC101929475 NFKB1 LRRC42 NFKB2 LSM3 NCL MED21 LOC101927060 CDC42EP3 LCN2 SP140L BIRC3 RSL24D1 IFNAR2 FTO N6AMT1 CD274 BLM NAB1 ANKRD12 TSACC FGF2 C1ORF54 LOC102724791 FAM204A LOC158960 APMAP TRIM69 PIM3 TXNDC9 IL13RA1 TRIT1 FUS GFPT1 DIS3 DTX3L TPRKB C15ORF57 DNAJC1 SYF2 FAAH2 BCL3 PSMG1 CDRT1 CPM MCM3 NSRP1 CNTNAP3 MCFD2 SHC2 CBWD5 APIP C15ORF48 KDSR C10ORF10 CEP290 SMIM11 MCL1 CCDC59 ERAP2 BPGM TSN RAB12 DBF4 SYT12 TRIM38 SNRPA1 BLZF1 CRP NCKAP5 TRIM31 SEMA3C SQRDL WDR89 TMA16 ARL13B PGM3 CCL2 TRIM21 CCDC50 TRIM22 PGM2 SSB IL1R1 GIN1 GOLPH3L RECQL PLEKHA4 PPA1 ZW10 PDCL3 NIN NEURL3 TMCC1 LPAR6 CCP110 LACC1 SUB1 ULK4 NEIL2 CCDC82 ALPK1 LUCAT1 LOC101926907 IFITM2 IFITM3 SP100 CPNE8 WBP5 TIFA UBE2L6 IL27RA PSMB10 LOC102723726 IFI16 CHEK2 MTHFD1L TCEB3 E2F3 B2M TIPIN ARSB APOBEC3F XBP1 PLA2G4E SLC35C1 EAF2 RAB27A SUCO C8ORF4 LCA5L SRPK1 HLA-E PARP14 PARP12 CWF19L1 TAGLN2 ACTRT3 RPS25 IL1RN LPGAT1 PWP1 MTRR PPP1R18 ANP32A TSHZ2 FAM89A IFI35 IFIT5 THUMPD1 BRCC3 IFI30 ICAM1 GSPT2 IFIT3 CCDC91 TNFSF11 MIPEPP3 KIF21B WARS BTN3A2 NCOA7 PTGES3 BTN3A1 TUBB NMI OTUD6B KLHL5 BTN3A3 OSMR CLDN12 PTMA POC5 TLR5 EEF1E1 TLR3 SPTBN5 TRAM1 ZCCHC10 HILPDA CETN2 SDC4 ZFAS1 C2CD4A STC1 CX3CL1 CTSS SOCS3 MAP1LC3B SNX7 CAP1 NPM1 IL32 FAM46C TMEM176A MRPS23 RANBP1 PARP1 TMEM176B PROX1 UTP11L PARP9 SPCS3 NEDD1 STK17A CCNE2 TTC5 NUPL1 CMPK1 FKBP14 FAF2 SLC20A1 TUBD1 ZDHHC2 ARNTL2 NANS PCDP1 RAB8B RARRES1 RARRES3 SPINK1 ERN1 TMEM138 UBXN10 LOC101927838 LOC101928927 BRWD3 STEAP1 PCNA RGS19 YAP1 SLFN5 ZFAND1 DNAJC24 MRFAP1 CWC27 ODF2L TAF1A C1RL FOPNL TGIF1 SPATA6L GCKR DESI2 RP6-206I17.2 NABP1 DSTN ARHGEF19 AP4B1 MKLN1-AS SDCBP EFNA1 DLGAP1-AS1 RFXAP PRPF4 OSTC SRPRB ERO1LB SYS1 RASGRP3 ETS2 DDX60 HIGD1A TGM2 SNORD17 UBD GGH PLA2G2A CBX3 GALNT2 MMP3 SPATS2 NFKBIZ FAM86B1 TNIP1 RPS3A PJA1 ETV6 IQCH SENP1 BMP6 SENP2 IRF1 NFKBIA IL7 ELF3 OAS2 IL8 RASA2 TMEM217 H3F3AP4 DNAH5 NNMT TNFAIP8 UBA6 TNFAIP3 CXCL2 NR2C1 CXCL1 TNFAIP2 RPAP2 CXCL3 CXCL6 PITPNC1 IRAK2 CASP7 TMEM206 CASP4 LPXN CASP1 SNAPC1 DDX18 S100PBP IL15RA THAP1 UFM1 CXORF38 RBMX TRIB2 DCTN6 ASNSD1 STEAP4 NUP107 DDX21 YBX3 RND1 OGFRL1 SPRED3 KYNU BMS1 CHSY1 SNORD56 NIFK IFT57 RBM34 RBM7
Down-regulated by SARS-CoV-2 in liver organoids from GSE151803 HEXIM2 GAMT ENDOG HAGHL GLYCTK C12ORF73 PRKAB2 MEX3D COMTD1 TMEM82 SLC5A9 LOC730101 AC074286.1 ARMC5 CYP1A1 UQCRC1 GALT ZNF276 LCAT ABAT TPRG1L GPR153 JHDM1D-AS1 PRAP1 KIAA1324 SNCG FBRS CSRP2BP ABCA2 SIGMAR1 CHST9 LOC101928303 NAPSA TIGD5 ZNF142 PRKCD ZNF383 CYP4F3 NR0B2 PDZK1 NR2F6 NUDT16L1 HCFC1 GJB1 RNF208 CLPP SFXN5 C19ORF24 PRR12 PP13 DOCK9-AS2 PDGFA VPS26B PLA2G6 LOC101928433 ALKBH7 OPLAH SULT1A1 FDXR KCNMB3 SNORA33 ZBTB7B TMEM8B UPF1 SIRT5 JOSD2 TMEM175 C1ORF21 LOC102724562 TMEM37 NCOR2 PQLC2 ADI1 PQLC1 PXMP2 LYRM7 GNPTG PAH CCDC7 ZNF358 GPRC5D ZNF234 FAM86HP ZNF592 FAXDC2 ZNF44 MRPL38 ECHS1 PRDM11 VSIG10L MRPL34 TMEM169 MRPL41 CEMP1 APC2 MEF2C PPARA DGAT2 CLUH DGAT1 MAMDC4 NR1H3 PGAM2 GSTO1 MBD3 SLC39A11 SCAF1 FMO5 GUCA2B KIAA0195 RNF125 NUDT22 SPSB2 MCF2L-AS1 PKN1 ZNF219 PTPRCAP RNF123 OAT NAPRT1 SCARNA12 NOTCH2NL LOC202181 LOC101928595 GLI4 PDF TP53TG1 FADS6 SULT1E1 SMPD1 METTL7A TMEM38A MLYCD SLC17A9 HS1BP3 NUDT16 FBXW5 ANKRD29 AKR1E2 PPP1R16A UCKL1 CHERP FOXP4 YIF1A LOC101927279 SDCBP2 SKI PINK1 DMWD PCNXL3 SLC25A34 CRAT TOR2A SLC27A2 OXNAD1 DGKD AGAP11 LOC101927044 C1ORF115 SLC9A1 RAB26 NRAP MFN2 SH2B1 SLC25A42 ACSS2 SH2B2 SEMA6C ESRRA MYPOP OSBPL7 WFS1 PCYT2 OSBPL5 C1ORF220 RITA1 POLRMT LRRC45 ABHD15 MED26 REEP6 MLXIPL NPHP3-ACAD11 SLC27A4 ZNF775 PIN1 SLC26A1 ZNF512B NELFA KMT2B IRS2 KMT2D INSIG1 FBXO27 C1ORF56 ABHD12 AMDHD2 TCEANC PLXNA2 ZNF768 EVI5L BMF CEBPA-AS1 SLC2A4RG HMGCS2 KCNIP3 NIPSNAP1 ZZEF1 PCCB BCL2 ITGA7 LOC728743 AHDC1 BCAR3 SLC25A1 DAGLA UBR4 FBXO44 CYP3A5 ATP5D KLC4 RDH12 VPS51 ZNF628 C8ORF82 E4F1 UGT2A3 RDH14 NADK CNGA1 MYO16 UGT2B10 FOXJ3 LOC102723775 AKR7L SORL1 FBXL15 SELENBP1 C15ORF37 MGAT4B LOC102723779 QTRT1 RAB17 SLC25A10 CEBPA HDAC6 PLEKHH3 MCMDC2 FRRS1 ARRB2 TTN CECR5 HECTD4 POLR2E PRADC1 DCAF11 SLC25A25 POLR2M SNORD32A ACTN4 ECH1 ADHFE1 LOC92249 CTNS DLEC1 MAPK8IP3 UBAC1 PEX14 FLYWCH1 NSMF TMCC3 ULK1 MXRA8 PEX11G NEIL1 SNORD45C GLS2 WBP1 PANK1 SLC46A1 AQP7 UQCR10 LRP3 UQCR11 AKAP6 FRAT1 C3ORF18 FZR1 HERC2 OGFOD2 LOC102723845 OXER1 FAM63B RAB11FIP3 SRPK3 LOC100506639 CMBL NARFL IL17RC BTD FCHSD1 TMEM220-AS1 POR ARRDC3-AS1 SDC1 MON1A ADCK5 MEP1A GCDH NECAB3 VARS SLC45A1 SLC35D1 ECI1 PIEZO1 NAGPA ZNHIT2 MARC2 ZBED3 HIST1H3H PIEZO2 SCARF1 TNS3 NADK2 PDK2 DECR2 IZUMO4 ZHX3 LINC00174 TMUB1 KRT13 BMS1P2 DERA LAT2 CLDN16 FAM20C RDH5 ALDOC SGK2 MEGF9 RHOU LINC01138 COL18A1 ACY3 CCDC107 KHK PCSK4 SEC14L2 SLC22A17 DND1 DGCR6L TMED4 SCAND1 SCAP CD36 SPTBN2 MAP4K2 CBR1 ATP6V0E2 SDCBP2-AS1 UBALD1 SORBS3 ANO8 MIB2 SGSM2 NUDT8 LBX2-AS1 FAM195A TSSK4 C21ORF2 APBA3 LPPR2 AMIGO1 DHRS11 RP4-756H11.3 SLC43A1 FAM69B C17ORF59 ZDHHC8 COX5B PEPD HYAL1 STBD1 RAC3 ACADS G6PC PHYH FAM3A SDHD TRPV1 KLHL25 RUNDC3B RPP25L BOP1 GLTPD1 FAM161B DOK7 CRYL1 SPNS1 OTC KLHDC9 ABCG2 CRTC1 CCBL1 PEBP1 RFNG ASB13 ARHGAP39 PBLD ARHGAP35 RXRA RAB40C CASKIN2 HIST1H2AE EMC6 TBC1D17 GAS2L1 ZGPAT LYNX1 HGD EPHX2 MPST DOLK LIME1 GLTSCR1 ACSF3 NAT6 NKAPL SELO UBE2Q2P1 CLASRP ACBD4 CARD14 LOC646021 MXD4 FGFR2 VCL CPLX1 RTKN KLHL17 TACO1 ESPN LTBP4 SLC2A8 ACRBP TMEM220 CCNB3 AKR7A3 CYC1 SH3GL1 ACAA1 CYP2J2 LOC100288846 SETD1A ABCC6 IRF2BP1 DAK COQ6 GRHPR CLCN7 MMRN2 NDUFS8 NDUFS7 ACOX2 HAGH PAOX FBP1 LPIN3 AC011747.7 MAST3 SLC3A1 PDLIM2 DPP7 MFSD7 CPT2 FAHD1 POLN DCXR LMTK3 TBC1D2 WEE1 TIAM2 CAT ALDH1A1 RPS6KB2 FMNL1 GNB1L ZNF815P THAP7-AS1 RANGRF DHTKD1 DDC AQP11 PALM3 SLC22A18AS C19ORF73 ENDOV EVA1B PCED1A SNTA1
Up-regulated by SARS-CoV-2 in mouse lung tissue from GSE150847 FNBP4 GBP8 MX1 GM10552 MX2 ZFYVE26 GTPBP2 GDAP10 A430027C01RIK CD4 GM24950 RNF225 TEP1 GLA IGTP IDO1 ZFP276 SERPINE1 GM20489 C3AR1 TSIX GM36931 GM25939 ADCY7 CH25H NXF1 AC123927.3 TMEM67 STOM MS4A14 CT025731.2 NCSTN GBP5 GM43462 BATF2 H2-D1 NAPSA DAXX ABCA7 MCAM ATP6AP1 VPS13D MTHFR F630028O10RIK NR1D1 DHFR MOV10 TLR13 LGMN GM45555 GM11425 ATF6 GM43010 CFB POM121 LILR4B GVIN1 PLA2G7 C2 LIPG RNF213 KLRK1 PLAC8 GM22442 GM31172 IL10RA FN1 TET2 TMEM173 SLC7A5 SLC7A8 SIGLEC1 BC023105 I830077J02RIK HAP1 GM4951 G530011O06RIK GM15929 TMEM106A IL18BP TINAGL1 DENND1A SLC7A1 MS4A4C MS4A4B ELOVL1 P2RY14 GPR35 STAT2 GM10499 GM15821 CD180 GM26716 GM27927 SYVN1 IFI202B MS4A6C GPR141 MS4A6B COL4A1 SLCO3A1 ANGPTL4 GM47657 NCAPD2 SLC29A3 CCL12 GRN SCARNA13 SCARNA10 SARS-COV-2 SMG1 GM22009 KCNA3 MS4A6D IFIH1 GPNMB 9130208D14RIK ZFP142 JAK3 GM45221 GM45223 AREL1 LAG3 GM14636 GM11127 TAP2 C530050E15RIK TAP1 IFIT1BL2 NEAT1 IFIT1BL1 CXCL10 FCGR1 CXCL11 GM44283 LY6A SLC9A8 TRAFD1 GM26857 XIST LY6E PLXNB2 GM6377 LY6I SLC28A2 GM43197 AGRN TRIM34B GM49730 OLFR1396 H2-K1 GM4070 H2-K2 GM23119 ATP10A ACAP1 TANK RNF31 GM26621 SH3BP2 LAMP2 ASCC3 GM26981 ZFP579 ESRRA CERS6 ATP8B4 BE692007 LNCPINT HPSE MALAT1 TPP1 XAF1 GM26992 PFKFB3 NOTCH1 CD274 NOTCH2 H2-M3 KMT2D 9430034N14RIK GM44292 SERPINA3F SLC15A4 SEMA7A FIRRE GM9574 ANGPT2 SETDB2 ITGA5 DTX3L GM7030 ITGA2 KCNJ15 GM24119 DDHD1 H2-T-PS TPCN2 TNFRSF1B ZZEF1 GM1966 GM24357 MFAP3 GM27505 SMCR8 NEMP2 GM23262 RETNLA SIRPB1C SIRPB1A WHAMM PTPN22 UBR4 NLRC5 GM37420 TMEM181B-PS GM28967 CD300LD EVI2 GZMB GZMA SYT15 MCOLN1 P2RX7 GM24497 EVI2A EVI2B P2RX4 GM26316 GM45193 DOP1B TRIM30A NRROS ALAS2 APOL9B APOL9A TRIM30D H2-Q7 TCIRG1 H2-Q5 H2-Q6 H2-Q4 H2-Q2 RESF1 MALT1 CD300LD5 CCL7 DHX58 CCL2 ITGB7 ATP7A SLC12A4 GM37238 RSAD2 GM40645 GM37472 GM37474 PML SRRM2 GM25360 GM49339 ALPK1 G530012D18RIK GM37589 SP100 SLC23A2 MYCBP2 NOD2 IL2RG MNDAL UBE2L6 PIRB LY6C1 GM12185 LY6C2 A130071D04RIK HERC6 C4B GM47260 NOCT SLAMF7 SUSD6 B2M CCNL2 GM5431 A630001G21RIK CCNL1 CCN1 IFITM6 MSR1 TMEM184B GM18853 GM18852 IFI44 PARP14 GM37376 PARP11 PARP12 ZUP1 PARP10 GM8810 IL1RN GM37488 SCARNA2 PRF1 IFIT2 IFIT1 ICAM1 IFIT3 ART3 HELZ2 GM47166 SCARF1 TNFSF10 GM25395 OASL1 APOD OASL2 GM27694 SFTPB LILRB4A LYVE1 A930037H05RIK GM17300 GM37033 BST2 PTPRC CEACAM1 THEMIS2 TLR9 TLR7 GM8995 TLR3 CSRNP1 DOT1L GM38236 GM38357 CD40 KLK1 SDC3 F830112A20RIK SDC4 PHF11A OAS1B PHF11B PTPRJ PHF11C PHF11D SBNO2 GM8989 CCR9 CCR5 C130089K02RIK TOR3A CD53 GM43858 GM38020 5830428M24RIK ARHGAP27OS3 CMPK2 EPPK1 GM27240 GM26035 VMP1 GM26397 CLEC4A1 ROBO4 CLEC4A3 GBA GM18301 GM38372 GM38377 GM47087 XDH GM6545 IFI209 ZBP1 CHRNB2 IFI207 SZT2 IFI208 IFI205 GM43633 GCA ARHGEF37 IFI206 IFI203 GM42549 IFI204 MPEG1 TMEM131 F830016B08RIK ZNFX1 GM37082 GM38050 TGFBI IFIT3B CD69 GM42664 LRP10 GM5960 DCLRE1C CD86 PLVAP SLFN8 APOL10B ITPRIP SLFN2 GM42659 IFI214 SLFN4 IFI213 PVR GM19412 IFI211 GM15056 4932438A13RIK SAMD9L GM28006 TAF1D FAM196B DDX58 CD93 KLRA2 ARID5A HBB-BS INHBB TDRD7 ISG15 PDIA6 ISG20 AC119228.1 AC174471.1 SELL ZCCHC2 H2-Q10 GM20547 LGALS3BP GM37084 ARHGAP17 DDX60 RGS1 GM20661 MLKL AW011738 GM29233 GM20559 ATP13A1 TTC17 TAPBP VCAN CLCN7 OAS2 OAS3 IRF2 IFNG IRF7 DOCK2 MCTP2 1810026B05RIK UBA7 GM22988 TNFAIP3 HBA-A1 SLC3A2 GM16185 HBA-A2 NT5C3 ADAR TAZ PLD4 SLFN10-PS SYNGR2 PSME2B CASP4 NAA25 TMEM209 BDKRB2 ZC3H7A 9930111J21RIK1 9930111J21RIK2 RHBDF2 IL15RA GM44668 FNDC3A SCIMP GM23849 IFI203-PS AIM2 GBP11 B4GALT5 H2-T24 H2-T23 H2-T22 LAMA5 THBS1 HMGCR USP18 DLEU2 GM5970
Down-regulated by SARS-CoV-2 in mouse lung tissue from GSE150847 GM11400 GM33432 EID1 ABCA12 RBP1 TMEM126B GM12735 MT-TI NHLRC2 MYL9 GM10561 FRMPD4 AHNAK HPGD 9330102E08RIK RNF7 ABAT TMEM72 DPYSL5 DPYSL3 ALOX5 GNG7 NXNL2 ALOXE3 SAMD4 MYH7B GM7298 GSTK1 KLF14 GABARAPL1 9530053A07RIK COL25A1 D430041D05RIK THAP12 PTP4A3 STRC KCNMA1 PKIA PRR16 SSPN CRYAB XKR7 RPL31 SCOC HOXD1 CYP2C52-PS LYPD8 ADH7 CYB5R3 ADH1 PCDHA1 NETO1 OLFR1418 STMN2 1810012K08RIK ALX4 RPL36 PCDHA5 LRAT PCDHA3 PCDHA9 HOXC8 PCDHA8 GABRA3 DUSP3 WDR38 GSTM2 GSTM1 RDX TET1 PAX6 DUSP9 GM19165 TMEFF2 GAS1 VMN2R24 MEI1 GAS7 A230005M16RIK MGLL GPR27 KCNC4 HIST2H2AC BMYC IQGAP3 5430419D17RIK HIST2H2AA2 FAM149A TRIM9 FAM171A2 RPS2-PS10 GM44350 PABPC1L2B-PS RPS15A DLGAP3 CCL21A CGNL1 TMOD2 CDKN2C AAED1 G0S2 VMN1R68 GM21149 FMO1 FMO2 F2 FMO5 FAM213B GTF2H5 COX6B2 GID4 CLIP3 LARS2 SMOC2 GM26714 NDUFA4L2 MAP1B SIS CDKL2 MT-TQ RPLP0 MT-TV SPEF1 KCNA2 GPR45 STON1 KCNA6 PYGM TUBA1A GM10260 JPH3 JPH4 AI593442 SLC17A7 GC GM45102 GM43166 EPM2A PRRX2 GM13425 S100A1 SKIDA1 GM48529 C130074G19RIK CRYBB3 GM26619 PNRC1 DISP3 WT1 PINK1 GM26735 CSPG5 PF4 GM47311 MROH2A CHRM1 ACSS3 CREBL2 ATP10B PAPSS1 GM34354 NPAS2 GM10282 PYGO1 CLEC3B GM26861 OLFR427 HMGN5 ABLIM3 GM47305 CHP2 GM47304 SEMA6C OLFR1382 IGFBP5 NEK7 LVRN B3GALT5 LSM2 FOXN4 SCRT2 RCAN2 1700020I14RIK LHX3 ERG GM9866 CNGB1 DPP10 GRIA1 COL17A1 DPT FGF1 LIN7C GLIS1 RHOBTB3 MMP24 PCDHAC1 FGF7 SLCO2B1 GM26883 MPC1 BAG1 NDN PCDHAC2 GM10076 GM9573 HMGCS2 KSR2 GM11168 CDC42BPG INMT APOA4 FOXL1 BICC1 CYB5A SEZ6L DBNDD2 RPL15-PS3 RPL37A APOA1 DLX2 SLC25A4 OLFR1351 KHDRBS3 SHC4 BNC2 SHC2 GLO1 OLFR1116 GM15772 FBXO41 UNC80 MROH5 RPL36A SERF1 ME1 PHACTR2 RN7S6 WASF3 SMIM13 RN7S2 RN7S1 MAGI2 PPP1R14A NTRK2 PPP1R14B NTRK3 KCNK10 GM49794 KCTD10 MYO1A CLCA4B CLEC2H PCOLCE2 INSM2 ZFP651 MYO1H GM26793 PNMAL2 NPCD CX3CR1 TTL TTK OLFR648 ADAMTS5 EDNRB SLITRK4 OLFR763 YAF2 PGM5 OIT3 BEND6 AY702103 5033428I22RIK SLC12A5 DUT IMP3 KRT9 ACSL6 VWA5B2 MTURN DCLK1 GCAT GM49450 PPP1R3C COL9A2 ITGBL1 GM48008 TLN2 CPNE5 TAGLN UQCR10 TRANK1 CYB5D1 PARD6G NTN4 APBB1 GM7611 RPRML SLC12A8 GM26461 WWTR1 AW551984 RASSF8 GM12191 ATP4A GM47295 SNORD100 TLCD1 GM7849 BPIFB4 GM6999 AKR1C14 RTL8B RPS21 RPS23 SIM2 VGLL3 GM47299 SIM1 PTGFR SNORD35B NECAB2 CRHR1 GM17535 EPHA10 HOXA11OS TSHZ2 ARX PCDH15 LGALSL PPL ACSM5 SLC6A21 HTATSF1 SOX4 GM47287 RPS17 DPF1 HIST1H3G HIST1H3D ZFP982 APOB HIST1H3F GM24187 LHFPL5 GM37151 A530084C06RIK RHOD KLHL1 KCNS1 TPPP3 GM49372 GM28439 RGS7BP ALDOB SPTBN4 RNCR4 REG3B CCDC105 KLK6 GRIK4 GM41409 EVPL MEDAG KRT20 CLYBL MAP1LC3A SLC22A16 PRX SH3PXD2A SPRR2A1 SPRR2A2 KIF1C GM29895 SPTBN1 STRA8 IGIP RFTN2 MTSS1L ANO7 VASH1 LBX1 ANO4 KIF26B MT-RNR2 NEDD4 MT-RNR1 CDK5R2 SYNM FAIM2 GM13093 TRAK2 CRIP1 FCGBP CAMK2N1 DMBT1 ENPP3 1700084F23RIK TGFB3 CAVIN2 SCARA5 OSR1 VMN1R85 VMN1R203 PRSS56 POU4F2 PCDHA11 GDF10 GSTA3 JCAD GM27021 ABCG4 CNTN1 TFAP2A MASP1 TMEM59L GM10720 PEBP1 NDRG2 AMOT HOXA11 CLGN RELN RAB40B TCTEX1D1 HIST1H2AF GPC6 DSCAM PPFIA3 REPS2 GM20659 USP46 TBCA NAALADL1 DDAH2 CDHR1 CDHR2 COL6A5 GM29100 VIL1 HTRA3 KLHL13 BHLHE23 ACTG2 EEF1B2 RGS6 ALDH3B3 CNN1 CCNB2 GM29237 ARHGAP20 CCNB1 MUC13 SULT5A1 SH3GL3 ABCC9 DEFA36 ETV1 NAP1L1 USP29 UBE2QL1 BC029722 CKS1B MT-TL2 CHD5 CXCL2 DEFA23 DEFA24 DEFA21 DEFA20 GM49089 RPL10-PS3 DEFA17 AW822073 DACT1 CD209F LMNTD1 GLRX5 GM44669 RPL35A-PS3 DLK1 DCN GAP43 PALLD MYO15B ALDH1A2 GM21541 GM45633 2810032G03RIK A930004D18RIK TCHH ACTC1 HIST1H2BR GRM2 CYGB CRYZ RPS4X NT5DC2 OXCT1