From 5e614257b311743588ac2ecd68248f2be094f4f8 Mon Sep 17 00:00:00 2001 From: Stefano Zamboni <39366866+SteZamboni@users.noreply.github.com> Date: Thu, 17 Oct 2024 16:22:12 +0200 Subject: [PATCH] feat: add percentages dto and endpoint (#177) * feat: added last_n percentages endpoint and percentages DTO * feat: merged main into branch * feat: alembic migration * feat: updated fastapi * feat: fixed orderby and limit and alembic --- api/alembic/env.py | 14 +- .../dccb82489f4d_add_percentage_column.py | 30 + api/app/db/dao/model_dao.py | 34 +- api/app/db/database.py | 4 +- .../tables/current_dataset_metrics_table.py | 1 + api/app/models/metrics/percentages_dto.py | 61 + api/app/models/model_dto.py | 4 + api/app/routes/model_route.py | 4 + api/app/services/model_service.py | 16 + api/poetry.lock | 1687 +++++++---------- api/pyproject.toml | 7 +- api/tests/commons/db_mock.py | 22 + api/tests/dao/model_dao_test.py | 32 + api/tests/routes/model_route_test.py | 26 + api/tests/services/model_service_test.py | 31 + spark/jobs/current_job.py | 1 + 16 files changed, 944 insertions(+), 1030 deletions(-) create mode 100644 api/alembic/versions/dccb82489f4d_add_percentage_column.py create mode 100644 api/app/models/metrics/percentages_dto.py diff --git a/api/alembic/env.py b/api/alembic/env.py index 2f9c06f2..67be389e 100644 --- a/api/alembic/env.py +++ b/api/alembic/env.py @@ -70,9 +70,12 @@ def run_migrations_offline() -> None: include_name=include_name ) + # Here we need to enforce public if schema target_metadata.schema is None, which is default schema (public for postgres) for alembic + target_schema = 'public' if target_metadata.schema is None else target_metadata.schema + with context.begin_transaction(): - context.execute(f'create schema if not exists "{target_metadata.schema}";') - context.execute(f'set search_path to "{target_metadata.schema}"') + context.execute(f'create schema if not exists "{target_schema}";') + context.execute(f'set search_path to "{target_schema}"') context.run_migrations() @@ -99,9 +102,12 @@ def run_migrations_online() -> None: include_name=include_name ) + # Here we need to enforce public if schema target_metadata.schema is None, which is default schema (public for postgres) for alembic + target_schema = 'public' if target_metadata.schema is None else target_metadata.schema + with context.begin_transaction(): - context.execute(f'create schema if not exists "{target_metadata.schema}";') - context.execute(f'set search_path to "{target_metadata.schema}"') + context.execute(f'create schema if not exists "{target_schema}";') + context.execute(f'set search_path to "{target_schema}"') context.run_migrations() diff --git a/api/alembic/versions/dccb82489f4d_add_percentage_column.py b/api/alembic/versions/dccb82489f4d_add_percentage_column.py new file mode 100644 index 00000000..e53efcac --- /dev/null +++ b/api/alembic/versions/dccb82489f4d_add_percentage_column.py @@ -0,0 +1,30 @@ +"""add percentage column + +Revision ID: dccb82489f4d +Revises: 6edab3f23907 +Create Date: 2024-10-17 09:03:48.063883 + +""" +from typing import Sequence, Union, Text + +from alembic import op +import sqlalchemy as sa +from app.db.tables.commons.json_encoded_dict import JSONEncodedDict + +# revision identifiers, used by Alembic. +revision: str = 'dccb82489f4d' +down_revision: Union[str, None] = '6edab3f23907' +branch_labels: Union[str, Sequence[str], None] = None +depends_on: Union[str, Sequence[str], None] = None + + +def upgrade() -> None: + # ### commands auto generated by Alembic - please adjust! ### + op.add_column('current_dataset_metrics', sa.Column('PERCENTAGES', JSONEncodedDict(astext_type=Text()), nullable=True)) + # ### end Alembic commands ### + + +def downgrade() -> None: + # ### commands auto generated by Alembic - please adjust! ### + op.drop_column('current_dataset_metrics', 'PERCENTAGES') + # ### end Alembic commands ### diff --git a/api/app/db/dao/model_dao.py b/api/app/db/dao/model_dao.py index 7eaa56bc..d0d69838 100644 --- a/api/app/db/dao/model_dao.py +++ b/api/app/db/dao/model_dao.py @@ -6,10 +6,12 @@ from fastapi_pagination import Page, Params from fastapi_pagination.ext.sqlalchemy import paginate import sqlalchemy -from sqlalchemy import asc, desc +from sqlalchemy import asc, desc, func from sqlalchemy.future import select as future_select from app.db.database import Database +from app.db.tables.current_dataset_metrics_table import CurrentDatasetMetrics +from app.db.tables.current_dataset_table import CurrentDataset from app.db.tables.model_table import Model from app.models.model_order import OrderType @@ -57,6 +59,36 @@ def get_all( with self.db.begin_session() as session: return session.query(Model).where(Model.deleted.is_(False)) + def get_last_n_percentages(self, n_models): + with self.db.begin_session() as session: + subq = ( + session.query( + CurrentDataset.model_uuid, + func.max(CurrentDataset.date).label('maxdate'), + ) + .group_by(CurrentDataset.model_uuid) + .subquery() + ) + return ( + session.query(Model, CurrentDatasetMetrics) + .join( + CurrentDataset, + CurrentDataset.model_uuid == Model.uuid, + ) + .join( + subq, + (CurrentDataset.model_uuid == subq.c.model_uuid) + & (CurrentDataset.date == subq.c.maxdate), + ) + .join( + CurrentDatasetMetrics, + CurrentDatasetMetrics.current_uuid == CurrentDataset.uuid, + ) + .order_by(Model.updated_at.desc()) + .limit(n_models) + .all() + ) + def get_all_paginated( self, params: Params = Params(), diff --git a/api/app/db/database.py b/api/app/db/database.py index 73dbb7bf..e1549b9c 100644 --- a/api/app/db/database.py +++ b/api/app/db/database.py @@ -27,13 +27,13 @@ class Reflected(DeferredReflection): # https://github.com/sqlalchemy/alembic/discussions/1351 # If the schema is the default, Alembic needs None otherwise migrations are messed up -schema_name = ( +fixed_schema = ( None if get_config().db_config.db_schema == 'public' else get_config().db_config.db_schema ) BaseTable = declarative_base( - metadata=MetaData(schema=schema_name, naming_convention=naming_convention) + metadata=MetaData(schema=fixed_schema, naming_convention=naming_convention) ) diff --git a/api/app/db/tables/current_dataset_metrics_table.py b/api/app/db/tables/current_dataset_metrics_table.py index 4958872f..4d8fd25a 100644 --- a/api/app/db/tables/current_dataset_metrics_table.py +++ b/api/app/db/tables/current_dataset_metrics_table.py @@ -27,3 +27,4 @@ class CurrentDatasetMetrics(Reflected, BaseTable, BaseDAO): data_quality = Column('DATA_QUALITY', JSONEncodedDict, nullable=True) drift = Column('DRIFT', JSONEncodedDict, nullable=True) statistics = Column('STATISTICS', JSONEncodedDict, nullable=True) + percentages = Column('PERCENTAGES', JSONEncodedDict, nullable=True) diff --git a/api/app/models/metrics/percentages_dto.py b/api/app/models/metrics/percentages_dto.py new file mode 100644 index 00000000..e30a0786 --- /dev/null +++ b/api/app/models/metrics/percentages_dto.py @@ -0,0 +1,61 @@ +from typing import Dict, List, Optional + +from pydantic import BaseModel, ConfigDict +from pydantic.alias_generators import to_camel + +from app.models.job_status import JobStatus + + +class DetailPercentage(BaseModel): + feature_name: str + score: float + + +class MetricPercentage(BaseModel): + value: float + details: List[Optional[DetailPercentage]] = None + + +class Percentages(BaseModel): + data_quality: MetricPercentage + model_quality: MetricPercentage + drift: MetricPercentage + + model_config = ConfigDict( + populate_by_name=True, alias_generator=to_camel, protected_namespaces=() + ) + + +class PercentagesDTO(BaseModel): + job_status: JobStatus + percentages: Optional[Percentages] + + model_config = ConfigDict( + arbitrary_types_allowed=True, + populate_by_name=True, + alias_generator=to_camel, + ) + + @staticmethod + def from_dict( + job_status: JobStatus, + percentages_data: Optional[Dict], + ) -> 'PercentagesDTO': + """Create a PercentagesDTO from a dictionary of data.""" + percentages = PercentagesDTO._create_percentages( + percentages_data=percentages_data + ) + + return percentages_data( + job_status=job_status, + percentages=percentages, + ) + + @staticmethod + def _create_percentages( + percentages_data: Optional[Dict], + ) -> Optional[Percentages]: + """Create a specific percentages instance from a dictionary of data.""" + if not percentages_data: + return None + return Percentages(**percentages_data) diff --git a/api/app/models/model_dto.py b/api/app/models/model_dto.py index 2229cf8b..0d174552 100644 --- a/api/app/models/model_dto.py +++ b/api/app/models/model_dto.py @@ -11,6 +11,7 @@ from app.db.dao.reference_dataset_dao import ReferenceDataset from app.models.inferred_schema_dto import FieldType, SupportedTypes from app.models.job_status import JobStatus +from app.models.metrics.percentages_dto import Percentages from app.models.utils import is_none, is_number, is_number_or_string, is_optional_float @@ -216,6 +217,7 @@ class ModelOut(BaseModel): latest_current_uuid: Optional[UUID] latest_reference_job_status: JobStatus latest_current_job_status: JobStatus + percentages: Optional[Percentages] model_config = ConfigDict( populate_by_name=True, alias_generator=to_camel, protected_namespaces=() @@ -226,6 +228,7 @@ def from_model( model: Model, latest_reference_dataset: Optional[ReferenceDataset] = None, latest_current_dataset: Optional[CurrentDataset] = None, + percentages: Optional[Percentages] = None, ): latest_reference_uuid = ( latest_reference_dataset.uuid if latest_reference_dataset else None @@ -264,4 +267,5 @@ def from_model( latest_current_uuid=latest_current_uuid, latest_reference_job_status=latest_reference_job_status, latest_current_job_status=latest_current_job_status, + percentages=percentages, ) diff --git a/api/app/routes/model_route.py b/api/app/routes/model_route.py index 26d0c429..a75e14d4 100644 --- a/api/app/routes/model_route.py +++ b/api/app/routes/model_route.py @@ -35,6 +35,10 @@ def get_all_models_paginated( def get_all_models(): return model_service.get_all_models() + @router.get('/last_n', status_code=200, response_model=List[ModelOut]) + def get_last_n_models(n_models: int): + return model_service.get_last_n_models_percentages(n_models) + @router.post('', status_code=201, response_model=ModelOut) def create_model(model_in: ModelIn): model = model_service.create_model(model_in) diff --git a/api/app/services/model_service.py b/api/app/services/model_service.py index c79b6c91..371f5f29 100644 --- a/api/app/services/model_service.py +++ b/api/app/services/model_service.py @@ -85,6 +85,22 @@ def get_all_models( model_out_list.append(model_out) return model_out_list + def get_last_n_models_percentages(self, n_models) -> List[ModelOut]: + models = self.model_dao.get_last_n_percentages(n_models) + model_out_list_tmp = [] + for model, metrics in models: + latest_reference_dataset, latest_current_dataset = self.get_latest_datasets( + model.uuid + ) + model_out = ModelOut.from_model( + model=model, + latest_reference_dataset=latest_reference_dataset, + latest_current_dataset=latest_current_dataset, + percentages=metrics.percentages, + ) + model_out_list_tmp.append(model_out) + return model_out_list_tmp + def get_all_models_paginated( self, params: Params = Params(), diff --git a/api/poetry.lock b/api/poetry.lock index 911a4fd8..032397dd 100644 --- a/api/poetry.lock +++ b/api/poetry.lock @@ -2,13 +2,13 @@ [[package]] name = "alembic" -version = "1.13.2" +version = "1.13.3" description = "A database migration tool for SQLAlchemy." optional = false python-versions = ">=3.8" files = [ - {file = "alembic-1.13.2-py3-none-any.whl", hash = "sha256:6b8733129a6224a9a711e17c99b08462dbf7cc9670ba8f2e2ae9af860ceb1953"}, - {file = "alembic-1.13.2.tar.gz", hash = "sha256:1ff0ae32975f4fd96028c39ed9bb3c867fe3af956bd7bb37343b54c9fe7445ef"}, + {file = 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+[tool.pytest.ini_options] +pythonpath = "api" + [tool.ruff] exclude = [".venv", "alembic"] required-version = ">=0.3.5" diff --git a/api/tests/commons/db_mock.py b/api/tests/commons/db_mock.py index 39c57da3..e6b02d30 100644 --- a/api/tests/commons/db_mock.py +++ b/api/tests/commons/db_mock.py @@ -504,6 +504,26 @@ def get_sample_current_dataset( ] } +percentages_dict = { + 'data_quality': { + 'value': 1.0, + 'details': [ + {'feature_name': 'num1', 'score': 0.0}, + {'feature_name': 'num2', 'score': 0.0}, + {'feature_name': 'cat1', 'score': 0.0}, + {'feature_name': 'cat2', 'score': 0.0}, + ], + }, + 'model_quality': {'value': -1, 'details': []}, + 'drift': { + 'value': 0.5, + 'details': [ + {'feature_name': 'num1', 'score': 1.0}, + {'feature_name': 'num2', 'score': 1.0}, + ], + }, +} + def get_sample_reference_metrics( reference_uuid: uuid.UUID = REFERENCE_UUID, @@ -525,6 +545,7 @@ def get_sample_current_metrics( data_quality: Dict = classification_data_quality_dict, statistics: Dict = statistics_dict, drift: Dict = drift_dict, + percentages: Dict = percentages_dict, ) -> CurrentDatasetMetrics: return CurrentDatasetMetrics( current_uuid=current_uuid, @@ -532,4 +553,5 @@ def get_sample_current_metrics( statistics=statistics, data_quality=data_quality, drift=drift, + percentages=percentages, ) diff --git a/api/tests/dao/model_dao_test.py b/api/tests/dao/model_dao_test.py index f388f052..78ab2b46 100644 --- a/api/tests/dao/model_dao_test.py +++ b/api/tests/dao/model_dao_test.py @@ -1,5 +1,7 @@ import uuid +from app.db.dao.current_dataset_dao import CurrentDatasetDAO +from app.db.dao.current_dataset_metrics_dao import CurrentDatasetMetricsDAO from app.db.dao.model_dao import ModelDAO from app.models.model_order import OrderType from tests.commons import db_mock @@ -11,6 +13,8 @@ class ModelDAOTest(DatabaseIntegration): def setUpClass(cls): super().setUpClass() cls.model_dao = ModelDAO(cls.db) + cls.metrics_dao = CurrentDatasetMetricsDAO(cls.db) + cls.dataset_dao = CurrentDatasetDAO(cls.db) def test_insert(self): model = db_mock.get_sample_model() @@ -68,3 +72,31 @@ def test_get_all_paginated_ordered(self): models = self.model_dao.get_all_paginated(order=OrderType.DESC, sort='name') assert models.items[0].name == model3.name assert len(models.items) == 3 + + def test_get_last_n_percentages(self): + self.model_dao.insert(db_mock.get_sample_model()) + current = db_mock.get_sample_current_dataset() + self.dataset_dao.insert_current_dataset(current) + metrics = db_mock.get_sample_current_metrics(current_uuid=current.uuid) + self.metrics_dao.insert_current_dataset_metrics(metrics) + model1_uuid = uuid.uuid4() + current1_uuid = uuid.uuid4() + model1 = db_mock.get_sample_model(id=2, uuid=model1_uuid, name='first_model') + self.model_dao.insert(model1) + current1 = db_mock.get_sample_current_dataset( + uuid=current1_uuid, model_uuid=model1_uuid + ) + self.dataset_dao.insert_current_dataset(current1) + metrics1 = db_mock.get_sample_current_metrics(current_uuid=current1_uuid) + self.metrics_dao.insert_current_dataset_metrics(metrics1) + current2_uuid = uuid.uuid4() + current2 = db_mock.get_sample_current_dataset( + uuid=current2_uuid, model_uuid=model1_uuid + ) + self.dataset_dao.insert_current_dataset(current2) + metrics2 = db_mock.get_sample_current_metrics(current_uuid=current2_uuid) + self.metrics_dao.insert_current_dataset_metrics(metrics2) + models = self.model_dao.get_last_n_percentages(2) + + assert models[0][1].current_uuid == current2.uuid + assert models[1][1].current_uuid == current.uuid diff --git a/api/tests/routes/model_route_test.py b/api/tests/routes/model_route_test.py index 94bee31f..5e7dae12 100644 --- a/api/tests/routes/model_route_test.py +++ b/api/tests/routes/model_route_test.py @@ -120,6 +120,32 @@ def test_get_all_models_paginated(self): params=Params(page=1, size=50), order=OrderType.ASC, sort=None ) + def test_get_last_n_models(self): + model0 = db_mock.get_sample_model() + current0 = db_mock.get_sample_current_dataset() + metrics0 = db_mock.get_sample_current_metrics(current_uuid=current0.uuid) + model1_uuid = uuid.uuid4() + model1 = db_mock.get_sample_model(id=2, uuid=model1_uuid, name='first_model') + current1_uuid = uuid.uuid4() + current1 = db_mock.get_sample_current_dataset( + uuid=current1_uuid, model_uuid=model1_uuid + ) + metrics1 = db_mock.get_sample_current_metrics(current_uuid=current1.uuid) + + sample_models_out = [ + ModelOut.from_model(model0, percentages=metrics0.percentages), + ModelOut.from_model(model1, percentages=metrics1.percentages), + ] + + self.model_service.get_last_n_models_percentages = MagicMock( + return_value=sample_models_out + ) + + res = self.client.get(f'{self.prefix}/last_n', params={'n_models': 2}) + assert res.status_code == 200 + assert jsonable_encoder(sample_models_out) == res.json() + self.model_service.get_last_n_models_percentages.assert_called_once_with(2) + def test_exception_handler_model_internal_error(self): model_in = db_mock.get_sample_model_in() self.model_service.create_model = MagicMock( diff --git a/api/tests/services/model_service_test.py b/api/tests/services/model_service_test.py index f0be09fe..04c246b3 100644 --- a/api/tests/services/model_service_test.py +++ b/api/tests/services/model_service_test.py @@ -6,6 +6,7 @@ import pytest from app.db.dao.current_dataset_dao import CurrentDatasetDAO +from app.db.dao.current_dataset_metrics_dao import CurrentDatasetMetricsDAO from app.db.dao.model_dao import ModelDAO from app.db.dao.reference_dataset_dao import ReferenceDatasetDAO from app.models.exceptions import ModelError, ModelNotFoundError @@ -26,6 +27,9 @@ def setUpClass(cls): reference_dataset_dao=cls.rd_dao, current_dataset_dao=cls.cd_dao, ) + cls.current_metrics_dao: CurrentDatasetMetricsDAO = MagicMock( + spec_set=CurrentDatasetMetricsDAO + ) cls.mocks = [cls.model_dao, cls.rd_dao, cls.cd_dao] def test_create_model_ok(self): @@ -181,5 +185,32 @@ def test_get_all_models_ok(self): assert result[1].name == 'model2' assert result[2].name == 'model3' + def test_get_last_n_models_percentages(self): + model0 = db_mock.get_sample_model() + current0 = db_mock.get_sample_current_dataset() + metrics0 = db_mock.get_sample_current_metrics(current_uuid=current0.uuid) + model1_uuid = uuid.uuid4() + model1 = db_mock.get_sample_model(id=2, uuid=model1_uuid, name='first_model') + current1_uuid = uuid.uuid4() + current1 = db_mock.get_sample_current_dataset( + uuid=current1_uuid, model_uuid=model1_uuid + ) + metrics1 = db_mock.get_sample_current_metrics(current_uuid=current1.uuid) + + sample = [(model1, metrics1), (model0, metrics0)] + + self.model_dao.get_last_n_percentages = MagicMock(return_value=sample) + self.rd_dao.get_latest_reference_dataset_by_model_uuid = MagicMock( + return_value=None + ) + self.cd_dao.get_latest_current_dataset_by_model_uuid = MagicMock( + return_value=None + ) + + result = self.model_service.get_last_n_models_percentages(2) + assert result[0].name == model1.name + assert result[1].name == model0.name + assert result[1].updated_at < result[0].updated_at + model_uuid = db_mock.MODEL_UUID diff --git a/spark/jobs/current_job.py b/spark/jobs/current_job.py index f0957770..02b37d73 100644 --- a/spark/jobs/current_job.py +++ b/spark/jobs/current_job.py @@ -167,6 +167,7 @@ def main( StructField("DATA_QUALITY", StringType(), True), StructField("MODEL_QUALITY", StringType(), True), StructField("DRIFT", StringType(), True), + StructField("PERCENTAGES", StringType(), True), ] )