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Environment setup errors #108

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DhruvaRajwade opened this issue Jul 8, 2024 · 1 comment
Open

Environment setup errors #108

DhruvaRajwade opened this issue Jul 8, 2024 · 1 comment
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@DhruvaRajwade
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Describe the bug
I faced errors when installing the GenSLM package using the pip install git+https://github.com/ramanathanlab/genslm command.

Error 1: The specific version for torch-lightning could not be found. I fixed this by cloning the repo, removing the version for torch-lightning from setup.cfg followed by running pip install .

Error 2: The h5py package threw an error when I tried to import genslm. Reinstalling h5py to the latest version fixed this, and everything else worked after this.

@DhruvaRajwade DhruvaRajwade added the bug Something isn't working label Jul 8, 2024
k90262 added a commit to k90262/genslm that referenced this issue Aug 20, 2024
k90262 added a commit to k90262/genslm that referenced this issue Aug 21, 2024
…(1. used the latest version of h5py 3.11.0, (2. skiped python 3.12, or faced compile issue like compile issue ronaldoussoren/pyobjc#519)
@jonathan-bravo
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I set up a Conda genslm.yaml and makefile here. When you cd into the directory and have conda and make installed, you should just be able to type make and it will set up the genslm conda env, pull genslm, replace the setup.cfg with the updated version, and install genslm. I was able to test this on my M1 macbook pro and the import genslm worked just fine.

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