Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

ROI localization for spatial information in rsfMRI atlas #26

Open
slieped opened this issue May 13, 2018 · 1 comment
Open

ROI localization for spatial information in rsfMRI atlas #26

slieped opened this issue May 13, 2018 · 1 comment
Labels
answered The question has been answered question Further information is requested

Comments

@slieped
Copy link

slieped commented May 13, 2018

Is it possible to have a correspondance-dictionary between the .csv columns and ROIs localization? I.e column1 is the mean value for a ROI in an area of the prefrontal cortex. Probably the original atlas (or the version inside nilearn) have this information, but it would be nice to have the .nii.gz file to visually exploit spatial localization.
This could be useful to perform seed-analysis, were the seed localization is important. I saw your response in #7 but dont know if it would work (using nilearn's to_filename function). My concern is if the ROI with value 1 will belong to the column 1 of the .csv file.

Thanks for all the help!

@GaelVaroquaux GaelVaroquaux added the question Further information is requested label May 15, 2018
@GaelVaroquaux
Copy link
Collaborator

Code similar to the code provided in #7 should give the basis of what you need.

In general, it is not always possible to have a simple correspondence between a column and a coordinate, because some columns denote distributed networks rather than simply-connected ROIs. However, you can get access to the spatial information by looking at the map.

Also of interest may be the code used to extract the time-series, which can be found in https://github.com/ramp-kits/autism/tree/master/preprocessing

@GaelVaroquaux GaelVaroquaux added the answered The question has been answered label May 15, 2018
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
answered The question has been answered question Further information is requested
Projects
None yet
Development

No branches or pull requests

2 participants