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CHANGELOG.md

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Changelog

All notable changes to this project will be documented in this file.

The format is based on Keep a Changelog and this project adheres to Semantic Versioning.

Unreleased

0.5.0 - 2020-02-18

Created VariantCallFormat.jl package, based on GeneticVariation.jl.

Added

  • Added Project.toml.

Changed

  • Removed functionality not related to VCF/BCF file IO.
  • Removed several dependencies.
  • Fixed hasinfo(record, key) bug

0.4.0 - 2018-11-22

Added

  • ⬆️ Support for julia v0.7 / v1.0

Changed

  • Fixed an issue with parsing VCF files from recent GATK releases.

Removed

  • ❗ Dropped support for julia v0.6 and v0.7

0.3.2 - 2018-07-25

Added

  • Project files: HUMANS.md & CHANGELOG.md

Changed

  • Fixed an error in the BCF.n_samples getter method that was causing it to return incorrect values.
  • Updated to README.md to latest style.

0.3.1 - 2017-10-10

Added

  • Method computing the average number of mutations, that should have gone into version 0.3.0.

0.3.0 - 2017-10-05

Added

  • Number of segregating sites method.
  • Methods for computing allele frequencies and nucleotide diversity from sequences.

Changed

  • Documentation updated.
  • API changes to dN/dS methods.

0.2.0 - 2017-07-31

Added

  • MASH distances.
  • NG86 method of dN/dS computation.
  • Proportion distance.

Removed

  • ❗ Dropped support for julia v0.5.

0.1.0 - 2017-06-23

Initial release, split from Bio.jl.