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Error in CheckDots(...) : object 'integrated' not found #1

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jkaiser87 opened this issue Mar 18, 2021 · 2 comments
Open

Error in CheckDots(...) : object 'integrated' not found #1

jkaiser87 opened this issue Mar 18, 2021 · 2 comments

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@jkaiser87
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Hi, I would like to use chooseR for a single cell dataset, but when trying to use it on a Seurat object (SCTransform and PCA performed) I get the following error: "Error in CheckDots(...) : object 'integrated' not found". Is this an issue due to the updated version of Seurat? Is there a way to fix this issue?
Thanks for any input you can provide in advance

@MenonLab
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Hi there, we have fixed a couple of bugs in the code, and forked a new version here: https://github.com/MenonLab/chooseR/
Could you see if the error still persists?

@jkaiser87
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Thank you very much, this new version resolved the issue and I can run the assay now!

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