|
| 1 | +RCSB Symmetry |
| 2 | +------------- |
| 3 | + |
| 4 | +## CE-Symm 2.1.0 (symmetry-2.1.0) |
| 5 | + |
| 6 | +Released 9 January 2019. |
| 7 | + |
| 8 | +Includes both CE-Symm and QuatSymm. |
| 9 | + |
| 10 | +This version requires Java 8 or newer. |
| 11 | + |
| 12 | +New features: |
| 13 | + |
| 14 | +- Use BioJava 5.2.0, which brings lots of improvements: |
| 15 | + - Support Java 8-11 (#97) |
| 16 | + - Improved structure parsing (e.g. better symmetry operator support, mmCIF & MMTF parsing, better distinction between asymm_id and auth_id for identifying chains, etc) |
| 17 | + - Newer Jmol version |
| 18 | +- Better documentation (#96) |
| 19 | +- Separate QuatSymm package |
| 20 | + |
| 21 | + |
| 22 | +## CE-Symm 2.0.0 (symmetry-2.0.0) |
| 23 | + |
| 24 | +Released 3 July 2018 after a long period of beta release candidates. |
| 25 | + |
| 26 | +This version requires Java 7-8. |
| 27 | + |
| 28 | +New features: |
| 29 | + |
| 30 | +- Multiple alignment between all repeats of the protein |
| 31 | +- Detection of multiple axes of symmetry (both dihedral point groups and hierarchical symmetry) |
| 32 | +- Detection and visualization of point groups |
| 33 | +- Better symmetry detection |
| 34 | +- Monte-Carlo alignment optimization |
| 35 | +- GUI/visualization improvements |
| 36 | +- Major command line option changes |
| 37 | +- Based on BioJava 4.2.12 |
| 38 | + - Diverse input formats (pdb, mmcif, local & remote files, chain & residue selections) |
| 39 | + - Numerous bug fixes & improvements |
| 40 | + |
| 41 | + |
| 42 | +## CE-Symm 1.0.0 (symmetry-tools-1.0.0) |
| 43 | + |
| 44 | +Released 18 August 2014 |
| 45 | + |
| 46 | +This is the initial release of the CE-Symm tool. It corresponds to the version |
| 47 | +used in Myers-Turnbull (2014). |
| 48 | + |
| 49 | +This version runs on Java 6-8. |
| 50 | + |
| 51 | +Note that the git history at this time is convoluted due to the merging of |
| 52 | +several projects. The similarly-named symmetry-1.0.0 tag contains only |
| 53 | +quaternary symmetry code, rather than CE-Symm. Further reorganizations followed |
| 54 | +the migration of stable quaternary symmetry and ce-symm code into BioJava. |
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