NAMESPACE

# Generated by roxygen2: do not edit by hand

export(annotateGRanges)
export(annotatePlot)
export(calculateMethSiteTranscriptCors)
export(calculateRegionMethylationTranscriptCors)
export(calculateSmoothedMethodicalScores)
export(correct_correlation_pvalues)
export(createRandomRegions)
export(expand_granges)
export(extractGRangesMethSiteValues)
export(extractMethSitesFromGenome)
export(findTMRs)
export(kallistoIndex)
export(kallistoQuantify)
export(liftoverMethRSE)
export(makeMethRSEFromArrayFiles)
export(makeMethRSEFromBedgraphs)
export(maskRangesInRSE)
export(methrixToRSE)
export(plotMethSiteCorCoefs)
export(plotMethodicalScores)
export(plotMethylationValues)
export(plotTMRs)
export(rangesRelativeToTSS)
export(rapidCorTest)
export(sampleMethSites)
export(strandedDistance)
export(sumTranscriptValuesForGenes)
export(summarizeRegionMethylation)
import(ExperimentHub)
import(GenomicRanges)
import(R.utils)
import(SummarizedExperiment)
import(ggplot2)