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gdcParseMetadata() returns no output #19

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qiongl-CTDS opened this issue Mar 30, 2022 · 1 comment
Open

gdcParseMetadata() returns no output #19

qiongl-CTDS opened this issue Mar 30, 2022 · 1 comment

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@qiongl-CTDS
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qiongl-CTDS commented Mar 30, 2022

I was trying to follow the instruction by running the step of paring metadata of RNA files of TCGA-CHOL project. And it returned no output. However, the query of miRNAs one worked.

> metaMatrix.RNA <- gdcParseMetadata(project.id = 'TCGA-CHOL',
                                   data.type  = 'RNAseq', 
                                   write.meta = FALSE)
> metaMatrix.RNA
 [1] file_name              file_id                patient               
 [4] sample                 submitter_id           entity_submitter_id   
 [7] sample_type            gender                 age_at_diagnosis      
[10] tumor_stage            tumor_grade            days_to_death         
[13] days_to_last_follow_up vital_status           project_id            
<0 rows> (or 0-length row.names)

Can you please look into this issue? Thanks!

@404563471
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I used the latest version package 1.20.0 and it worked.

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