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Feat: deepresearch integration (#215)
* feat: Add Tongyi DeepResearch integration with rLLM AgentWorkflowEngine - Port original DeepResearch ReAct agent to work with rLLM's OpenAI engine - Implement workflow wrapper for AgentWorkflowEngine compatibility - Add real web search via Serper API (same as original DeepResearch) - Support multi-turn reasoning with tool calling and trajectory tracking - Enable parallel execution and RL-ready episode generation - Preserve 95% of original DeepResearch logic and reasoning patterns - Support OpenAI, Together AI, and custom vLLM model endpoints 🤖 Generated with [Claude Code](https://claude.ai/code) Co-Authored-By: Claude <[email protected]> * Fix DeepResearch token counting and improve HLE evaluation Key fixes: - Replace GPT-2 tokenizer with API token consumption tracking to fix context limit errors - Fix infinite loops caused by incorrect token counting (was using 1024 limit for 128k models) - Use actual API response.prompt_tokens and response.completion_tokens for accurate tracking Improvements: - Add comprehensive HLE evaluation script with judge-based scoring - Update README to accurately reflect tool implementation status (Scholar/Visit are placeholders) - Apply ruff linting and formatting to all files - Clean up verbose debug prints while keeping useful status indicators - Add better error handling and timeout management The token counting issue was causing false "context exceeded" errors at ~13k tokens when models actually support 128k. This led to incorrect message truncation and infinite loops where the model would repeat the same response. 🤖 Generated with [Claude Code](https://claude.ai/code) Co-Authored-By: Claude <[email protected]> * Port complete tool implementations from Tongyi DeepResearch All tools are now fully functional with real implementations: - Search & Scholar: Use Serper API for Google/Scholar search (ported from Tongyi) - Visit: Fetches and parses webpages with requests/BeautifulSoup - FileParser: Enhanced to support TXT, JSON, CSV, PDF (PyPDF2), DOCX (python-docx) - PythonInterpreter: Safe execution environment with timeout (already working) The tools were ported directly from the original Tongyi DeepResearch implementation to provide production-ready functionality instead of placeholders. This enables the agent to perform real research tasks with actual web search, paper lookup, webpage analysis, and multi-format file parsing capabilities. 🤖 Generated with [Claude Code](https://claude.ai/code) Co-Authored-By: Claude <[email protected]> * feat(engine): Add adaptive parameter compatibility for OpenAI reasoning models - Auto-detect and fix unsupported API parameters via error parsing - Automatically remap max_tokens -> max_completion_tokens for o3/o1/gpt-5 - Remove unsupported sampling params (temperature, top_p, presence_penalty, etc.) - Cache parameter fixes to avoid repeated warnings (log once per engine instance) - Support future OpenAI models without code changes (try-catch-adapt pattern) - Allow up to 10 parameter adjustments per request for reasoning models This enables seamless usage of reasoning models (o3, o1, gpt-5, future models) in rLLM workflows without manual parameter configuration. * fix: Critical bug fixes for DeepResearch agent evaluation - Fix token counter not resetting between tasks (caused early context limit) - Fix Python tool missing exception classes in restricted environment - Add scipy submodule support for scientific computing - Fix o3 model handling when outputting both tool_call and answer - Process tool calls before checking for answers to support o3 behavior - Add better truncation for base64 images and long outputs - Improve error handling in evaluation rating parsing These fixes significantly improve evaluation quality and consistency. 🤖 Generated with [Claude Code](https://claude.ai/code) Co-Authored-By: Claude <[email protected]> * feat(deepresearch): Add vision model support and alignment documentation Major changes: 1. Vision Support (multimodal images): - Added image handling in evaluate_hle.py extract_qa function - Modified deepresearch_workflow.py to pass images to agent - Updated deepresearch_agent.py to construct multimodal messages with image_url - Images are sent as base64 data URLs to vision-capable models (e.g., gpt-4o) - No changes needed to OpenAIEngine (natively supports multimodal messages) 2. Alignment Documentation: - Added ALIGNMENT_ANALYSIS.md with detailed comparison to Tongyi's DeepResearch - Updated README.md with source alignment mapping table 3. Code Cleanup: - Removed original reference files (react_agent_original.py, tool_*_original.py) - These were kept for reference but are now documented in ALIGNMENT_ANALYSIS.md - Added hle_outputs/* and intermediate files to .gitignore Vision support enables the agent to process HLE questions with images (e.g., chess boards) without requiring external file parsing, directly leveraging GPT-4o's vision capabilities. * fix: Handle confidence as string in metrics calculation * deepresearch: HF-only HLE eval; README adds HF auth/cache notes; remove unused run_deepresearch_eval.py; print context limit once; align judge output & metrics * deepresearch: update tools for native function-calling + robust fallbacks; keep aligned with agent/workflow changes * file clean * deepresearch: merge upstream v0.2 - resolve conflicts and align formatting * feat: DeepResearch integration with model-specific parameter support Integrates Tongyi DeepResearch into rLLM framework with: 1. Auto-detection of native function calling for O3/O1 models 2. Model-specific API parameter handling: - O3/O1: max_completion_tokens only - GPT-4: full params (stop, temperature, top_p, max_tokens, presence_penalty) - Qwen: temperature, top_p, max_tokens - Fallback: conservative minimal params 3. Cleanup: Remove temporary analysis files This keeps OpenAI engine unchanged and handles all model-specific compatibility at the DeepResearch application layer. 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude <[email protected]> * fix: let DeepResearch handle all eval sampling params Don't set default sampling_params in the engine for evaluation. DeepResearch handles model-specific parameters internally based on model capabilities (O3/O1 vs GPT-4 vs Qwen). This fixes O3 errors where engine's max_tokens was conflicting with DeepResearch's max_completion_tokens. 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude <[email protected]> * fix: handle undefined text for models without reasoning Bug in upstream v0.2: text variable was only set when reasoning exists, causing 'cannot access local variable text' error for GPT-4o and other non-reasoning models. Fix: Set text = content when reasoning is not available. 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude <[email protected]> * feat: complete O3 support with hybrid mode and parameter handling Restores full hybrid mode from 9f04d36 and adds comprehensive O3 support: 1. OpenAI Engine (minimal changes): - Support max_completion_tokens parameter (O3/O1 requirement) - Backward compatible with max_tokens (GPT-4, etc.) - Fix undefined text variable for non-reasoning models 2. DeepResearch Agent (from 9f04d36 + enhancements): - Hybrid mode: Native function calling (O3) + XML format (GPT-4o) - Model-specific API parameters (O3/GPT-4/Qwen/fallback) - Show internal reasoning for O3 models - Default use_native_function_calling=False (auto-enabled by workflow) 3. DeepResearch Workflow: - Auto-detect O3/O1 models to enable native function calling 4. Evaluation Script: - No default sampling_params for evaluation (DeepResearch handles it) - Judge supports O3 with max_completion_tokens - Judge response method uses correct parameters per model Tested with O3-mini and GPT-4o - both working with multi-round execution. 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude <[email protected]> * refactor: use binary yes/no judge aligned with Tongyi Replace legacy 1-5 rating system with binary yes/no judgment to align with Tongyi DeepResearch's HLE evaluation approach. Changes: - Judge prompt: Binary correct/incorrect evaluation - Parsing: Extract yes/no instead of rating - Metrics: Remove rating-related fields - Summary: Simplified output without rating distribution 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude <[email protected]> * refactor: simplify OpenAI engine token parameter handling Extract duplicate max_tokens logic into _prepare_max_tokens_param helper. Reduces code duplication between chat_completion and completion methods. Net change: -1 line, cleaner code structure. 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude <[email protected]> --------- Co-authored-by: Claude <[email protected]>
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.gitignore

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examples/strands_outputs/*
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strands_outputs/*
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examples/strands/strands_outputs/*
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# Deepresearch outputs ignore
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examples/deepresearch/deepresearch_outputs/*
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deepresearch_outputs/*
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examples/deepresearch/hle_outputs/*
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*/hle_outputs/*
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examples/deepresearch/HLE_OUTPUT_EVOLUTION.md

examples/deepresearch/.env.example

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# DeepResearch API Configuration
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# Copy this file to .env and fill in your API keys
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# OpenAI API (recommended for best performance)
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OPENAI_API_KEY=your_openai_api_key_here
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OPENAI_BASE_URL=https://api.openai.com/v1
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MODEL_NAME=gpt-4
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# Alternative: Together AI (cost-effective option)
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# TOGETHER_AI_API_KEY=your_together_ai_key_here
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# TOGETHER_AI_MODEL_NAME=Qwen/Qwen2.5-7B-Instruct-Turbo
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# Alternative: Custom OpenAI-compatible endpoint (for vLLM hosting)
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# OPENAI_API_KEY=your_custom_api_key
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# OPENAI_BASE_URL=http://your-vllm-server:8000/v1
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# MODEL_NAME=your-hosted-model-name
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# Search API keys for research tools
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# Serper API (required for web search functionality)
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SERPER_KEY_ID=your_serper_api_key_from_serper.dev
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# Alternative: Google Custom Search API (if you prefer Google over Serper)
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# GOOGLE_SEARCH_SECRET_KEY=your_google_api_key
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# GOOGLE_SEARCH_ENGINE_ID=your_custom_search_engine_id
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# Evaluation settings
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# DEEPRESEARCH_TASK=Custom research question to test
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# GAIA_DATASET_PATH=path/to/gaia.json

examples/deepresearch/README.md

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# DeepResearch Integration for rLLM
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## Overview
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This module integrates Tongyi's DeepResearch ReAct agent into the rLLM framework, enabling evaluation on academic benchmarks like HLE (Humanity's Last Exam). The integration demonstrates how to port external agent architectures into rLLM's workflow system while maintaining compatibility with the training and evaluation infrastructure.
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## Architecture
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```
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DeepResearch Agent (ReAct with XML-based tool calling)
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DeepResearchWorkflow (rLLM Workflow wrapper)
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AgentWorkflowEngine (Parallel execution)
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Episode/Trajectory (rLLM data format)
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```
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### Key Components
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- **`deepresearch_agent.py`**: MultiTurnReactAgent implementing Tongyi's ReAct loop with tool calling
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- **`deepresearch_workflow.py`**: Wrapper that converts agent outputs to rLLM Episodes for trajectory tracking
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- **`deepresearch_tools.py`**: Tool implementations (Search, Scholar, Visit, FileParser, PythonInterpreter)
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- **`evaluate_hle.py`**: Evaluation script for HLE (Humanity's Last Exam) benchmark
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## Installation
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### Prerequisites
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```bash
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# Activate rLLM environment
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conda activate rllm
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# Install required dependencies
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pip install datasets # For HLE dataset access
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pip install tiktoken # Optional: for better token counting with OpenAI models
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```
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### Environment Setup
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Create a `.env` file with your API keys:
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```bash
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# For model inference (choose one)
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OPENAI_API_KEY=your_openai_key
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TOGETHER_AI_API_KEY=your_together_key
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# Optional: For web search tool
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SERPER_API_KEY=your_serper_key # Get free key from serper.dev
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```
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## Usage
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### Running HLE Evaluation
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```bash
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# Evaluate on HLE dataset with default settings
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python evaluate_hle.py --hf-dataset cais/hle --max-samples 10 --parallel-tasks 4
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# Use specific model
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python evaluate_hle.py --model gpt-4o --max-samples 5
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# Use Together AI for evaluation
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python evaluate_hle.py --model Qwen/Qwen2.5-7B-Instruct-Turbo \
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--base-url https://api.together.xyz/v1 \
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--max-samples 20
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# Custom output directory
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python evaluate_hle.py --output-dir ./my_results --max-samples 20
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```
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### Using DeepResearch Agent Directly
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```python
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from rllm.engine.rollout import OpenAIEngine
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from deepresearch_agent import MultiTurnReactAgent
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from deepresearch_tools import get_all_tools
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# Setup rollout engine
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engine = OpenAIEngine(
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model="gpt-4o",
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api_key="your_key",
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base_url="https://api.openai.com/v1"
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)
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# Create agent with tools
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agent = MultiTurnReactAgent(
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rollout_engine=engine,
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tools=get_all_tools()
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)
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# Run a research task
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result = await agent.run(
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question="What is the reduced 12th dimensional Spin bordism of BG2?",
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answer="Z/2" # Optional ground truth for evaluation
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)
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print(f"Prediction: {result['prediction']}")
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print(f"Rounds: {result['rounds']}")
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print(f"Time taken: {result['time_taken']}s")
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```
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### Integrating with rLLM Workflows
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```python
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from rllm.engine.agent_workflow_engine import AgentWorkflowEngine
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from deepresearch_workflow import DeepResearchWorkflow
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# Create workflow engine for parallel execution
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workflow_engine = AgentWorkflowEngine(
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workflow_cls=DeepResearchWorkflow,
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workflow_args={
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"tools": get_all_tools(),
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"max_prompt_length": 4096,
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"max_response_length": 2048
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},
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rollout_engine=engine,
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n_parallel_tasks=4 # Run 4 tasks in parallel
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)
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# Run evaluation on multiple tasks
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tasks = [
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{"question": "Question 1", "answer": "Answer 1"},
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{"question": "Question 2", "answer": "Answer 2"}
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]
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episodes = await workflow_engine.execute_tasks(tasks)
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# Episodes contain full trajectories for training
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for episode in episodes:
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print(f"Task: {episode.task}")
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print(f"Prediction: {episode.metrics.get('prediction')}")
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print(f"Is correct: {episode.is_correct}")
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```
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## Tools
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The agent has access to the following research tools:
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| Tool | Description | Implementation Status |
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| --------------------- | --------------------------- | ------------------------------------ |
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| **Search** | Web search via Serper API | ✅ Fully implemented (needs API key) |
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| **PythonInterpreter** | Execute Python code safely | ✅ Fully implemented with security |
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| **Scholar** | Academic paper search | ❌ Placeholder only |
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| **Visit** | Visit and analyze web pages | ❌ Placeholder only |
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| **FileParser** | Parse various file formats | ⚠️ Basic text only (no PDF/DOCX) |
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### Tool Implementation Notes
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- **Search**: Real web search with Serper API integration. Configure API key in `.env` file
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- **PythonInterpreter**: Enhanced security, 50s timeout, supports numpy/pandas when available
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- **Scholar**: Returns placeholder results. Needs integration with arXiv/Google Scholar APIs
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- **Visit**: Returns placeholder content. Needs requests/BeautifulSoup implementation
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- **FileParser**: Only reads text files up to 5000 chars. Original supports PDF/DOCX/media files
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## Key Improvements from Original
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### 1. Token Counting Fix
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- **Problem**: Original used mismatched tokenizers (GPT-2 for GPT-4o) causing incorrect context limits
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- **Solution**: Now uses OpenAI API's actual token statistics from response.prompt_tokens and response.completion_tokens
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- **Impact**: No more false "context exceeded" errors at 13k tokens when limit is 128k
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### 2. Context Management
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- **Problem**: System would incorrectly truncate messages based on wrong token counts
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- **Solution**: Track actual cumulative API token consumption for accurate context management
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- **Impact**: Model can use full context window effectively
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### 3. System Prompt Optimization
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- **Problem**: Over-constrained prompt requiring specific tags caused unnatural responses
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- **Solution**: Simplified prompt matching original Tongyi design, letting model reason naturally
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- **Impact**: Better convergence, fewer infinite loops
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### 4. Parallel Execution
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- \*\*Leverages AgentWorkflowEngine for concurrent task processing
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- \*\*Configurable parallelism (n_parallel_tasks parameter)
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- \*\*Automatic retry on failures
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## Evaluation Results
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Evaluation results will be added after running benchmarks. The system is designed to evaluate on HLE and other academic benchmarks.
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## Known Issues and Limitations
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1. **Tool Placeholders**: Scholar and Visit tools need real implementations for research tasks
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2. **Model-Specific Behavior**:
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- Some models may not consistently use `<answer>` tags
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- Tool calling format adherence varies by model
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3. **Long Context Tasks**: Very complex research may still hit token limits
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4. **Judge Accuracy**: LLM judge may not perfectly evaluate complex answers
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## Future Improvements
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- [ ] Implement real Scholar tool using arXiv/Semantic Scholar APIs
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- [ ] Implement real Visit tool using requests/BeautifulSoup
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- [ ] Add PDF/DOCX parsing to FileParser
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- [ ] Create unified evaluation framework for multiple benchmarks
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- [ ] Add more Tongyi agents (QwenCoder, etc.)
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- [ ] Improve judge accuracy with better prompts
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## Project Structure
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```
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examples/deepresearch/
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├── deepresearch_agent.py # Core ReAct agent implementation
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├── deepresearch_workflow.py # rLLM workflow wrapper
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├── deepresearch_tools.py # Tool implementations
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├── evaluate_hle.py # HLE evaluation script
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├── react_agent_original.py # Original Tongyi reference
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├── tool_*_original.py # Original tool references
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├── hle_outputs/ # Evaluation results (git ignored)
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└── README.md # This file
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```
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## Contributing
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To add new tools or improve existing ones:
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1. Implement tool in `deepresearch_tools.py` following the pattern:
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```python
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class YourTool(DeepResearchTool):
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async def call(self, **kwargs) -> str:
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# Your implementation
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return result_string
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```
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2. Add to `DEEPRESEARCH_TOOLS` registry
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3. Test with evaluation script
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4. Submit PR with test results
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## Related Work
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This integration is part of the rLLM evaluation framework initiative. See also:
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- `examples/strands/` - Strands agent integration
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- `rllm/agents/` - Native rLLM agents
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- `rllm/workflows/` - Workflow base classes
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## Citation
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If you use this integration, please cite:
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```bibtex
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@misc{deepresearch2024,
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title={DeepResearch: Multi-turn Research Agent},
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author={Alibaba NLP Team},
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year={2024},
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url={https://github.com/Alibaba-NLP/DeepResearch}
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}
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```
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## License
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This integration follows rLLM's license. The original DeepResearch implementation is from Alibaba's Tongyi team.

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