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Update base-calling model to 5.1.0? #22

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jayhesselberth opened this issue Dec 28, 2024 · 5 comments
Open

Update base-calling model to 5.1.0? #22

jayhesselberth opened this issue Dec 28, 2024 · 5 comments

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@jayhesselberth
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# either a path to a basecalling model to use with dorado or a model selection name to specify model to download and use
base_calling_model: ".test/[email protected]"

We'd want [email protected] from https://github.com/nanoporetech/dorado#rna-models

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@lkwhite

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@lkwhite
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lkwhite commented Jan 2, 2025

I think we should focus on a minimal release of a pipeline using the v5.0 basecalling model for RNA004 and only after submission of this paper re-evaluate how different 5.1 looks on the synthetic data before going on to support something more flexible / robust here.

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